CoV-GLUEGenomeCountriesLineagesMutationsInsertionsDeletionsUpdated:

CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF1ab/nsp3 : CodonNum = 425

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF1ab/nsp3425L425LL1243LsynctGctA1628994660.5811283992-3994
ORF1ab/nsp3425L425LL1243LsynctGctT1628951840.3182523992-3994
ORF1ab/nsp3425L425LL1243LsynCtgTtg1628916320.100193992-3994
ORF1ab/nsp3425L425LL1243LsynctGctC1628960.0003683473992-3994
ORF1ab/nsp3425L425LL1243LsynCtGTtA1628910.00006139113992-3994
ORF1ab/nsp3425L425QL1243QnonsyncTgcAg22122113992-3994
ORF1ab/nsp3425L425ML1243MnonsynCtgAtg13413413992-3994
ORF1ab/nsp3425L425PL1243PnonsyncTgcCg1141120.9824563992-3994
ORF1ab/nsp3425L425PL1243PnonsyncTGcCA11410.008771933992-3994
ORF1ab/nsp3425L425PL1243PnonsyncTGcCT11410.008771933992-3994
ORF1ab/nsp3425L425delL1243deldelCTG---868613992-3994
ORF1ab/nsp3425L425RL1243RnonsyncTgcGg161613992-3994
ORF1ab/nsp3425L425VL1243VnonsynCtgGtg131313992-3994
ORF1ab/nsp3425L425del2L1243del2delcTGc--2213992-3994
ORF1ab/nsp3425L425del1L1243del1delctGct-1113992-3994
ORF1ab/nsp3425L425XL1243XnonsynCTGTAA1113992-3994
ORF1ab/nsp3425L425FL1243FnonsynCtGTtT1113992-3994
ORF1ab/nsp3425L425SL1243SnonsynCTgTCg1113992-3994
ORF1ab/nsp3425L425HL1243HnonsyncTGcAT1113992-3994
ORF1ab/nsp3425L425IL1243InonsynCtGAtA1113992-3994

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF1ab/nsp3425L425LctGctA946616289All0.00181
ORF1ab/nsp3425L425LctGctT518416289All0.000992
ORF1ab/nsp3425L425LCtgTtg163216289All0.000312
ORF1ab/nsp3425L425LctGctC616289All0.000001
ORF1ab/nsp3425L425LCtGTtA116289All0
ORF1ab/nsp3425L425LctGctA84298430AY.740.974789
ORF1ab/nsp3425L425LCtGTtA18430AY.740.000116
ORF1ab/nsp3425L425LctGctT28903095B.1.1.70.002587
ORF1ab/nsp3425L425LCtgTtg1203095B.1.1.70.000107
ORF1ab/nsp3425L425LctGctA853095B.1.1.70.000076
ORF1ab/nsp3425L425LctGctT956957B.1.1.4200.961771
ORF1ab/nsp3425L425LctGctC1957B.1.1.4200.001006
ORF1ab/nsp3425L425LctGctT425565AY.40.000661
ORF1ab/nsp3425L425LCtgTtg109565AY.40.00017
ORF1ab/nsp3425L425LctGctA31565AY.40.000048
ORF1ab/nsp3425L425LctGctA308308B.1.36.90.990354
ORF1ab/nsp3425L425LCtgTtg283288AY.200.010999
ORF1ab/nsp3425L425LctGctT3288AY.200.000117
ORF1ab/nsp3425L425LctGctA2288AY.200.000078
ORF1ab/nsp3425L425LCtgTtg257271P.10.004049
ORF1ab/nsp3425L425LctGctT12271P.10.000189
ORF1ab/nsp3425L425LctGctA2271P.10.000032
ORF1ab/nsp3425L425QcTgcAg221221All0.000042
ORF1ab/nsp3425L425LctGctT96199B.1.617.20.000361
ORF1ab/nsp3425L425LctGctA56199B.1.617.20.000211
ORF1ab/nsp3425L425LCtgTtg47199B.1.617.20.000177
ORF1ab/nsp3425L425LCtgTtg126159AY.430.000558
ORF1ab/nsp3425L425LctGctT23159AY.430.000102
ORF1ab/nsp3425L425LctGctA9159AY.430.00004
ORF1ab/nsp3425L425LctGctC1159AY.430.000004
ORF1ab/nsp3425L425MCtgAtg134134All0.000026
ORF1ab/nsp3425L425LctGctT88130B.1.10.001596
ORF1ab/nsp3425L425LCtgTtg36130B.1.10.000653
ORF1ab/nsp3425L425LctGctA6130B.1.10.000109
ORF1ab/nsp3425L425LCtgTtg125125B.1.5640.053237
ORF1ab/nsp3425L425LctGctT66118AY.440.000402
ORF1ab/nsp3425L425LCtgTtg37118AY.440.000225
ORF1ab/nsp3425L425LctGctA15118AY.440.000091
ORF1ab/nsp3425L425PcTgcCg112114All0.000021
ORF1ab/nsp3425L425PcTGcCT1114All0
ORF1ab/nsp3425L425PcTGcCA1114All0
ORF1ab/nsp3425L425LctGctA68110B.1.1770.000895
ORF1ab/nsp3425L425LCtgTtg35110B.1.1770.000461
ORF1ab/nsp3425L425LctGctT7110B.1.1770.000092
ORF1ab/nsp3425L425LctGctT85106B.10.000779
ORF1ab/nsp3425L425LCtgTtg12106B.10.00011
ORF1ab/nsp3425L425LctGctA9106B.10.000082
ORF1ab/nsp3425L425QcTgcAg9797B.1.617.20.000365
ORF1ab/nsp3425L425delCTG---8686All0.000016
ORF1ab/nsp3425L425QcTgcAg7070AY.250.000421
ORF1ab/nsp3425L425LCtgTtg6666B.1.1.2910.048998
ORF1ab/nsp3425L425LctGctT6365B.1.438.10.006757
ORF1ab/nsp3425L425LctGctA265B.1.438.10.000215
ORF1ab/nsp3425L425LctGctT2959AY.1020.000769
ORF1ab/nsp3425L425LctGctA2259AY.1020.000583
ORF1ab/nsp3425L425LCtgTtg859AY.1020.000212
ORF1ab/nsp3425L425LctGctA5555AY.120.017383
ORF1ab/nsp3425L425LctGctT2153AY.1030.00013
ORF1ab/nsp3425L425LctGctA2053AY.1030.000124
ORF1ab/nsp3425L425LCtgTtg1253AY.1030.000075
ORF1ab/nsp3425L425LCtgTtg4349AY.30.000428
ORF1ab/nsp3425L425LctGctT449AY.30.00004
ORF1ab/nsp3425L425LctGctA249AY.30.00002
ORF1ab/nsp3425L425LctGctA4348AY.470.001338
ORF1ab/nsp3425L425LCtgTtg448AY.470.000124
ORF1ab/nsp3425L425LctGctT148AY.470.000031
ORF1ab/nsp3425L425LctGctA3939B.1.1200.3
ORF1ab/nsp3425L425LctGctA3737AY.210.070209
ORF1ab/nsp3425L425MCtgAtg3535AY.1200.001301
ORF1ab/nsp3425L425LctGctT2734B.1.20.000238
ORF1ab/nsp3425L425LctGctA534B.1.20.000044
ORF1ab/nsp3425L425LCtgTtg234B.1.20.000018
ORF1ab/nsp3425L425LctGctT2532AY.1000.00115
ORF1ab/nsp3425L425LCtgTtg732AY.1000.000322
ORF1ab/nsp3425L425LctGctA1431AY.250.000084
ORF1ab/nsp3425L425LctGctT831AY.250.000048
ORF1ab/nsp3425L425LCtgTtg831AY.250.000048
ORF1ab/nsp3425L425LctGctC131AY.250.000006
ORF1ab/nsp3425L425LctGctT3030B.1.1.3170.012351
ORF1ab/nsp3425L425PcTgcCg2929B.1.1.70.000026
ORF1ab/nsp3425L425LctGctA2526AY.450.003042
ORF1ab/nsp3425L425LctGctT126AY.450.000122
ORF1ab/nsp3425L425LctGctT1820AY.99.20.001659
ORF1ab/nsp3425L425LCtgTtg220AY.99.20.000184
ORF1ab/nsp3425L425LCtgTtg2020AZ.20.01642
ORF1ab/nsp3425L425LCtgTtg2020B.1.5600.092593
ORF1ab/nsp3425L425delCTG---1919B.1.1.70.000017
ORF1ab/nsp3425L425LctGctT818AY.390.000198
ORF1ab/nsp3425L425LctGctA618AY.390.000148
ORF1ab/nsp3425L425LCtgTtg418AY.390.000099
ORF1ab/nsp3425L425LctGctT1018AY.98.10.000484
ORF1ab/nsp3425L425LCtgTtg818AY.98.10.000387
ORF1ab/nsp3425L425LCtgTtg918B.1.4290.000212
ORF1ab/nsp3425L425LctGctT818B.1.4290.000188
ORF1ab/nsp3425L425LctGctA118B.1.4290.000024
ORF1ab/nsp3425L425LCtgTtg1318P.20.002426
ORF1ab/nsp3425L425LctGctT518P.20.000933
ORF1ab/nsp3425L425LctGctT1317AY.260.000368
ORF1ab/nsp3425L425LCtgTtg317AY.260.000085
ORF1ab/nsp3425L425LctGctA117AY.260.000028
ORF1ab/nsp3425L425LctGctT1017AY.330.000668
ORF1ab/nsp3425L425LctGctA717AY.330.000467
ORF1ab/nsp3425L425MCtgAtg1717AY.440.000103
ORF1ab/nsp3425L425LctGctA817AY.50.000165
ORF1ab/nsp3425L425LctGctT817AY.50.000165
ORF1ab/nsp3425L425LCtgTtg117AY.50.000021
ORF1ab/nsp3425L425LCtgTtg1217B.1.2210.000852
ORF1ab/nsp3425L425LctGctA417B.1.2210.000284
ORF1ab/nsp3425L425LctGctT117B.1.2210.000071
ORF1ab/nsp3425L425RcTgcGg1616All0.000003
ORF1ab/nsp3425L425LctGctT1416AY.420.000563
ORF1ab/nsp3425L425LCtgTtg216AY.420.00008
ORF1ab/nsp3425L425LctGctT916B.1.360.001313
ORF1ab/nsp3425L425LctGctA416B.1.360.000584
ORF1ab/nsp3425L425LCtgTtg316B.1.360.000438
ORF1ab/nsp3425L425LCtgTtg1116B.1.5260.000259
ORF1ab/nsp3425L425LctGctA316B.1.5260.000071
ORF1ab/nsp3425L425LctGctT216B.1.5260.000047
ORF1ab/nsp3425L425LCtgTtg1115B.1.1.5190.000437
ORF1ab/nsp3425L425LctGctT415B.1.1.5190.000159
ORF1ab/nsp3425L425LctGctA715B.1.3510.000208
ORF1ab/nsp3425L425LCtgTtg515B.1.3510.000149
ORF1ab/nsp3425L425LctGctT315B.1.3510.000089
ORF1ab/nsp3425L425LctGctA1314AY.240.005603
ORF1ab/nsp3425L425LCtgTtg114AY.240.000431
ORF1ab/nsp3425L425LctGctT1214B.1.1600.000374
ORF1ab/nsp3425L425LctGctC114B.1.1600.000031
ORF1ab/nsp3425L425LCtgTtg114B.1.1600.000031
ORF1ab/nsp3425L425LctGctA1014B.1.2340.001319
ORF1ab/nsp3425L425LctGctT414B.1.2340.000528
ORF1ab/nsp3425L425VCtgGtg1313All0.000002
ORF1ab/nsp3425L425LctGctT1313AY.1180.000814
ORF1ab/nsp3425L425LctGctT1313AY.7.10.001465
ORF1ab/nsp3425L425PcTgcCg1313P.1.140.000621
ORF1ab/nsp3425L425QcTgcAg1212AY.350.002797
ORF1ab/nsp3425L425MCtgAtg1212AY.40.000019
ORF1ab/nsp3425L425LCtgTtg1111B.1.1.500.007468
ORF1ab/nsp3425L425PcTgcCg1111B.1.1.5190.000437
ORF1ab/nsp3425L425LctGctA1111C.160.011665
ORF1ab/nsp3425L425LctGctA1010AY.5.30.003374
ORF1ab/nsp3425L425LctGctA810B.1.4270.000404
ORF1ab/nsp3425L425LCtgTtg210B.1.4270.000101
ORF1ab/nsp3425L425LctGctA59AY.290.000079
ORF1ab/nsp3425L425LCtgTtg39AY.290.000047
ORF1ab/nsp3425L425LctGctT19AY.290.000016
ORF1ab/nsp3425L425LCtgTtg79B.1.1.2220.001428
ORF1ab/nsp3425L425LctGctT29B.1.1.2220.000408
ORF1ab/nsp3425L425LctGctT99B.1.1.3060.003946
ORF1ab/nsp3425L425LctGctT99B.1.3800.059603
ORF1ab/nsp3425L425LCtgTtg68AY.1130.000854
ORF1ab/nsp3425L425LctGctA28AY.1130.000285
ORF1ab/nsp3425L425LCtgTtg88AY.4.50.00086
ORF1ab/nsp3425L425LctGctA88AZ.40.026846
ORF1ab/nsp3425L425LCtgTtg38P.1.140.000143
ORF1ab/nsp3425L425LctGctT28P.1.140.000096
ORF1ab/nsp3425L425LctGctA28P.1.140.000096
ORF1ab/nsp3425L425LctGctC18P.1.140.000048
ORF1ab/nsp3425L425LCtgTtg47AY.750.000224
ORF1ab/nsp3425L425LctGctT27AY.750.000112
ORF1ab/nsp3425L425LctGctA17AY.750.000056
ORF1ab/nsp3425L425LCtgTtg77B.1.1.4640.010309
ORF1ab/nsp3425L425MCtgAtg77B.1.3510.000208
ORF1ab/nsp3425L425LctGctT57B.1.6090.002397
ORF1ab/nsp3425L425LCtgTtg27B.1.6090.000959
ORF1ab/nsp3425L425delCTG---77B.1.617.20.000026
ORF1ab/nsp3425L425MCtgAtg66AY.230.000418
ORF1ab/nsp3425L425LctGctA36AY.230.000209
ORF1ab/nsp3425L425LctGctT36AY.230.000209
ORF1ab/nsp3425L425delCTG---66AY.40.000009
ORF1ab/nsp3425L425LctGctT66AY.850.002563
ORF1ab/nsp3425L425LctGctA56AY.90.000338
ORF1ab/nsp3425L425LCtgTtg16AY.90.000068
ORF1ab/nsp3425L425QcTgcAg66B.1.1.70.000005
ORF1ab/nsp3425L425LCtgTtg66B.1.2360.01232
ORF1ab/nsp3425L425LCtgTtg56B.1.36.10.005701
ORF1ab/nsp3425L425LctGctA16B.1.36.10.00114
ORF1ab/nsp3425L425LctGctT56C.370.00058
ORF1ab/nsp3425L425LCtgTtg16C.370.000116
ORF1ab/nsp3425L425LctGctT66N.40.025532
ORF1ab/nsp3425L425LctGctA66P.1.160.002245
ORF1ab/nsp3425L425LctGctT35AY.1170.000254
ORF1ab/nsp3425L425LCtgTtg15AY.1170.000085
ORF1ab/nsp3425L425LctGctA15AY.1170.000085
ORF1ab/nsp3425L425PcTgcCg55AY.250.00003
ORF1ab/nsp3425L425LctGctA45AY.590.002119
ORF1ab/nsp3425L425LctGctT15AY.590.00053
ORF1ab/nsp3425L425LCtgTtg35AY.690.00056
ORF1ab/nsp3425L425LctGctT15AY.690.000187
ORF1ab/nsp3425L425LctGctA15AY.690.000187
ORF1ab/nsp3425L425MCtgAtg55B.1.1.10.001633
ORF1ab/nsp3425L425LCtgTtg55B.1.1.3220.04386
ORF1ab/nsp3425L425QcTgcAg55B.1.1600.000156
ORF1ab/nsp3425L425LctGctA55B.1.2110.125
ORF1ab/nsp3425L425PcTgcCg55P.10.000079
ORF1ab/nsp3425L425PcTgcCg44AY.1030.000025
ORF1ab/nsp3425L425QcTgcAg44AY.40.000006
ORF1ab/nsp3425L425PcTgcCg44AY.40.000006
ORF1ab/nsp3425L425LctGctA24AY.4.20.000043
ORF1ab/nsp3425L425LctGctT24AY.4.20.000043
ORF1ab/nsp3425L425LctGctA44AY.620.001743
ORF1ab/nsp3425L425MCtgAtg44AY.9.10.000335
ORF1ab/nsp3425L425delCTG---44B.10.000037
ORF1ab/nsp3425L425LCtgTtg44B.1.1.2140.000222
ORF1ab/nsp3425L425LctGctT34B.1.1.280.000934
ORF1ab/nsp3425L425LCtgTtg14B.1.1.280.000311
ORF1ab/nsp3425L425LctGctT44B.1.1.3180.001207
ORF1ab/nsp3425L425RcTgcGg44B.1.1.70.000004
ORF1ab/nsp3425L425MCtgAtg44B.1.1.70.000004
ORF1ab/nsp3425L425LctGctT34B.1.36.290.001552
ORF1ab/nsp3425L425LCtgTtg14B.1.36.290.000517
ORF1ab/nsp3425L425MCtgAtg44B.1.466.20.001565
ORF1ab/nsp3425L425LctGctA34B.1.5610.001191
ORF1ab/nsp3425L425LCtgTtg14B.1.5610.000397
ORF1ab/nsp3425L425LctGctT24B.1.617.10.000258
ORF1ab/nsp3425L425LCtgTtg24B.1.617.10.000258
ORF1ab/nsp3425L425PcTgcCg44B.1.617.20.000015
ORF1ab/nsp3425L425QcTgcAg44P.1.140.000191
ORF1ab/nsp3425L425LctGctT44Q.80.00066
ORF1ab/nsp3425L425LCtgTtg23A.10.000564
ORF1ab/nsp3425L425LctGctA13A.10.000282
ORF1ab/nsp3425L425LctGctA23AY.1060.00067
ORF1ab/nsp3425L425LctGctT13AY.1060.000335
ORF1ab/nsp3425L425LCtgTtg23AY.1190.000071
ORF1ab/nsp3425L425LctGctT13AY.1190.000035
ORF1ab/nsp3425L425LCtgTtg23AY.130.000322
ORF1ab/nsp3425L425LctGctA13AY.130.000161
ORF1ab/nsp3425L425PcTgcCg33AY.290.000047
ORF1ab/nsp3425L425LctGctT33AY.3.10.000256
ORF1ab/nsp3425L425VCtgGtg33AY.40.000005
ORF1ab/nsp3425L425RcTgcGg33AY.40.000005
ORF1ab/nsp3425L425delCTG---33AY.4.50.000322
ORF1ab/nsp3425L425PcTgcCg33AY.440.000018
ORF1ab/nsp3425L425LCtgTtg33AY.46.20.001906
ORF1ab/nsp3425L425RcTgcGg33AY.470.000093
ORF1ab/nsp3425L425LCtgTtg23AY.540.000191
ORF1ab/nsp3425L425LctGctA13AY.540.000095
ORF1ab/nsp3425L425LctGctA33AY.880.002653
ORF1ab/nsp3425L425PcTgcCg33AY.9.20.00011
ORF1ab/nsp3425L425LCtgTtg23AY.980.000158
ORF1ab/nsp3425L425LctGctT13AY.980.000079
ORF1ab/nsp3425L425LctGctT23B0.000256
ORF1ab/nsp3425L425LCtgTtg13B0.000128
ORF1ab/nsp3425L425MCtgAtg33B.10.000027
ORF1ab/nsp3425L425QcTgcAg33B.10.000027
ORF1ab/nsp3425L425PcTgcCg33B.10.000027
ORF1ab/nsp3425L425PcTgcCg23B.1.10.000036
ORF1ab/nsp3425L425PcTGcCA13B.1.10.000018
ORF1ab/nsp3425L425LctGctT23B.1.1.10.000653
ORF1ab/nsp3425L425LCtgTtg13B.1.1.10.000327
ORF1ab/nsp3425L425LCtgTtg33B.1.1.1210.007282
ORF1ab/nsp3425L425LctGctT33B.1.1.1740.010135
ORF1ab/nsp3425L425MCtgAtg33B.1.1.280.000934
ORF1ab/nsp3425L425QcTgcAg33B.1.1.5190.000119
ORF1ab/nsp3425L425LctGctT33B.1.1.5210.016043
ORF1ab/nsp3425L425delCTG---33B.1.1770.00004
ORF1ab/nsp3425L425PcTgcCg33B.1.1770.00004
ORF1ab/nsp3425L425LctGctT33B.1.177.480.009375
ORF1ab/nsp3425L425LCtgTtg23B.1.3110.000549
ORF1ab/nsp3425L425LctGctT13B.1.3110.000275
ORF1ab/nsp3425L425PcTgcCg33B.1.4360.003086
ORF1ab/nsp3425L425LctGctT33B.1.5170.001281
ORF1ab/nsp3425L425QcTgcAg33B.1.595.20.12
ORF1ab/nsp3425L425delCTG---33B.1.5960.000261
ORF1ab/nsp3425L425LCtgTtg23B.1.6210.000177
ORF1ab/nsp3425L425LctGctT13B.1.6210.000089
ORF1ab/nsp3425L425LCtgTtg33C.360.002732
ORF1ab/nsp3425L425LCtgTtg33N.50.0053
ORF1ab/nsp3425L425MCtgAtg33P.10.000047
ORF1ab/nsp3425L425LCtgTtg23Q.30.00029
ORF1ab/nsp3425L425LctGctA13Q.30.000145
ORF1ab/nsp3425L425PcTgcCg120.055556
ORF1ab/nsp3425L425LCtgTtg120.055556
ORF1ab/nsp3425L425LctGctT120.055556
ORF1ab/nsp3425L425PcTGcCT120.055556
ORF1ab/nsp3425L425del2cTGc--22All0
ORF1ab/nsp3425L425LctGctT22AT.10.010256
ORF1ab/nsp3425L425RcTgcGg22AY.1030.000012
ORF1ab/nsp3425L425LCtgTtg12AY.1050.000643
ORF1ab/nsp3425L425LctGctT12AY.1050.000643
ORF1ab/nsp3425L425LctGctT22AY.1110.000366
ORF1ab/nsp3425L425LCtgTtg22AY.1160.000574
ORF1ab/nsp3425L425LCtgTtg12AY.116.10.000311
ORF1ab/nsp3425L425LctGctT12AY.116.10.000311
ORF1ab/nsp3425L425LCtgTtg12AY.1200.000037
ORF1ab/nsp3425L425LctGctT12AY.1200.000037
ORF1ab/nsp3425L425PcTgcCg22AY.260.000057
ORF1ab/nsp3425L425VCtgGtg22AY.260.000057
ORF1ab/nsp3425L425LctGctA12AY.340.000097
ORF1ab/nsp3425L425LCtgTtg12AY.340.000097
ORF1ab/nsp3425L425MCtgAtg22AY.390.000049
ORF1ab/nsp3425L425VCtgGtg22AY.4.20.000043
ORF1ab/nsp3425L425LctGctT22AY.4.40.000818
ORF1ab/nsp3425L425delCTG---22AY.430.000009
ORF1ab/nsp3425L425LctGctA22AY.480.00093
ORF1ab/nsp3425L425LctGctT22AY.60.000082
ORF1ab/nsp3425L425LctGctA22AY.610.00021
ORF1ab/nsp3425L425LctGctA22AY.670.000929
ORF1ab/nsp3425L425LctGctT22AY.840.000875
ORF1ab/nsp3425L425LctGctT22AY.9.10.000167
ORF1ab/nsp3425L425LctGctT22AY.9.20.000073
ORF1ab/nsp3425L425delCTG---22B.1.10.000036
ORF1ab/nsp3425L425delCTG---22B.1.1.2320.00363
ORF1ab/nsp3425L425LctGctT22B.1.1.250.001137
ORF1ab/nsp3425L425LCtgTtg22B.1.1.30.017391
ORF1ab/nsp3425L425LctGctT22B.1.1.3540.008772
ORF1ab/nsp3425L425LctGctT22B.1.1.390.001019
ORF1ab/nsp3425L425LCtgTtg22B.1.1.5280.009615
ORF1ab/nsp3425L425VCtgGtg22B.1.1.70.000002
ORF1ab/nsp3425L425QcTgcAg22B.1.1.700.000682
ORF1ab/nsp3425L425LctGctT22B.1.1.830.00542
ORF1ab/nsp3425L425LCtgTtg22B.1.1110.00235
ORF1ab/nsp3425L425LCtgTtg22B.1.160.70.004158
ORF1ab/nsp3425L425MCtgAtg22B.1.1770.000026
ORF1ab/nsp3425L425LctGctT22B.1.177.210.000153
ORF1ab/nsp3425L425PcTgcCg22B.1.177.440.001038
ORF1ab/nsp3425L425LctGctT22B.1.177.70.00033
ORF1ab/nsp3425L425delCTG---22B.1.20.000018
ORF1ab/nsp3425L425MCtgAtg22B.1.20.000018
ORF1ab/nsp3425L425LctGctT22B.1.2430.000139
ORF1ab/nsp3425L425delCTG---22B.1.258.170.000208
ORF1ab/nsp3425L425LctGctT22B.1.36.80.002
ORF1ab/nsp3425L425LCtgTtg22B.1.3690.00057
ORF1ab/nsp3425L425LctGctT22B.1.3990.003868
ORF1ab/nsp3425L425MCtgAtg22B.1.4290.000047
ORF1ab/nsp3425L425LCtgTtg22B.1.4970.00063
ORF1ab/nsp3425L425MCtgAtg22B.1.5610.000794
ORF1ab/nsp3425L425MCtgAtg22B.1.617.20.000008
ORF1ab/nsp3425L425delCTG---22B.1.6210.000177
ORF1ab/nsp3425L425LCtgTtg22B.1.6370.000146
ORF1ab/nsp3425L425LctGctA22B.1.9.50.011364
ORF1ab/nsp3425L425LCtgTtg12D.20.000075
ORF1ab/nsp3425L425LctGctT12D.20.000075
ORF1ab/nsp3425L425delCTG---22P.10.000032
ORF1ab/nsp3425L425LctGctA12P.1.10.000318
ORF1ab/nsp3425L425LCtgTtg12P.1.10.000318
ORF1ab/nsp3425L425delCTG---22P.1.120.000968
ORF1ab/nsp3425L425LCtgTtg22P.1.120.000968
ORF1ab/nsp3425L425LCtgTtg11A0.000387
ORF1ab/nsp3425L425MCtgAtg11A0.000387
ORF1ab/nsp3425L425FCtGTtT11All0
ORF1ab/nsp3425L425XCTGTAA11All0
ORF1ab/nsp3425L425del1ctGct-11All0
ORF1ab/nsp3425L425SCTgTCg11All0
ORF1ab/nsp3425L425HcTGcAT11All0
ORF1ab/nsp3425L425ICtGAtA11All0
ORF1ab/nsp3425L425PcTgcCg11AY.1020.000027
ORF1ab/nsp3425L425MCtgAtg11AY.1020.000027
ORF1ab/nsp3425L425MCtgAtg11AY.1030.000006
ORF1ab/nsp3425L425LctGctA11AY.1070.000466
ORF1ab/nsp3425L425QcTgcAg11AY.1080.001103
ORF1ab/nsp3425L425QcTgcAg11AY.1180.000063
ORF1ab/nsp3425L425MCtgAtg11AY.1190.000035
ORF1ab/nsp3425L425delCTG---11AY.1190.000035
ORF1ab/nsp3425L425PcTgcCg11AY.1200.000037
ORF1ab/nsp3425L425QcTgcAg11AY.16.10.00047
ORF1ab/nsp3425L425PcTgcCg11AY.200.000039
ORF1ab/nsp3425L425LCtgTtg11AY.23.10.000417
ORF1ab/nsp3425L425MCtgAtg11AY.250.000006
ORF1ab/nsp3425L425MCtgAtg11AY.270.000065
ORF1ab/nsp3425L425MCtgAtg11AY.30.00001
ORF1ab/nsp3425L425QcTgcAg11AY.30.00001
ORF1ab/nsp3425L425LctGctA11AY.300.000396
ORF1ab/nsp3425L425LctGctA11AY.320.000532
ORF1ab/nsp3425L425MCtgAtg11AY.330.000067
ORF1ab/nsp3425L425LctGctT11AY.34.10.00051
ORF1ab/nsp3425L425delCTG---11AY.360.000148
ORF1ab/nsp3425L425LctGctA11AY.360.000148
ORF1ab/nsp3425L425LctGctA11AY.39.10.00004
ORF1ab/nsp3425L425del2cTGc--11AY.40.000002
ORF1ab/nsp3425L425LctGctA11AY.4.10.000737
ORF1ab/nsp3425L425LctGctA11AY.4.2.10.000149
ORF1ab/nsp3425L425PcTgcCg11AY.420.00004
ORF1ab/nsp3425L425MCtgAtg11AY.430.000004
ORF1ab/nsp3425L425HcTGcAT11AY.440.000006
ORF1ab/nsp3425L425LCtgTtg11AY.460.000104
ORF1ab/nsp3425L425LCtgTtg11AY.46.40.000165
ORF1ab/nsp3425L425LctGctT11AY.46.50.000198
ORF1ab/nsp3425L425delCTG---11AY.46.60.000072
ORF1ab/nsp3425L425LctGctT11AY.46.60.000072
ORF1ab/nsp3425L425QcTgcAg11AY.470.000031
ORF1ab/nsp3425L425LctGctA11AY.520.000814
ORF1ab/nsp3425L425MCtgAtg11AY.520.000814
ORF1ab/nsp3425L425LctGctA11AY.530.000288
ORF1ab/nsp3425L425QcTgcAg11AY.60.000041
ORF1ab/nsp3425L425LctGctT11AY.650.000533
ORF1ab/nsp3425L425LctGctT11AY.680.000274
ORF1ab/nsp3425L425LCtgTtg11AY.700.000209
ORF1ab/nsp3425L425LctGctA11AY.720.001361
ORF1ab/nsp3425L425delCTG---11AY.720.001361
ORF1ab/nsp3425L425LctGctT11AY.730.000665
ORF1ab/nsp3425L425delCTG---11AY.75.10.00018
ORF1ab/nsp3425L425MCtgAtg11AY.9.20.000037
ORF1ab/nsp3425L425LCtgTtg11AY.920.000287
ORF1ab/nsp3425L425LCtgTtg11AY.950.000761
ORF1ab/nsp3425L425QcTgcAg11AY.99.20.000092
ORF1ab/nsp3425L425MCtgAtg11B0.000128
ORF1ab/nsp3425L425FCtGTtT11B.10.000009
ORF1ab/nsp3425L425VCtgGtg11B.10.000009
ORF1ab/nsp3425L425RcTgcGg11B.10.000009
ORF1ab/nsp3425L425VCtgGtg11B.1.10.000018
ORF1ab/nsp3425L425MCtgAtg11B.1.10.000018
ORF1ab/nsp3425L425delCTG---11B.1.1.10.000327
ORF1ab/nsp3425L425LctGctT11B.1.1.100.001115
ORF1ab/nsp3425L425LctGctT11B.1.1.1360.021277
ORF1ab/nsp3425L425LctGctT11B.1.1.1570.000913
ORF1ab/nsp3425L425LctGctT11B.1.1.1610.003534
ORF1ab/nsp3425L425LctGctA11B.1.1.1700.001247
ORF1ab/nsp3425L425LctGctA11B.1.1.1710.003676
ORF1ab/nsp3425L425delCTG---11B.1.1.1920.002309
ORF1ab/nsp3425L425LctGctT11B.1.1.2000.007463
ORF1ab/nsp3425L425LctGctT11B.1.1.2160.00089
ORF1ab/nsp3425L425LCtgTtg11B.1.1.2190.005
ORF1ab/nsp3425L425delCTG---11B.1.1.2220.000204
ORF1ab/nsp3425L425LCtgTtg11B.1.1.2320.001815
ORF1ab/nsp3425L425LctGctT11B.1.1.2540.011236
ORF1ab/nsp3425L425LctGctT11B.1.1.2770.000759
ORF1ab/nsp3425L425LCtgTtg11B.1.1.2840.000107
ORF1ab/nsp3425L425MCtgAtg11B.1.1.2840.000107
ORF1ab/nsp3425L425delCTG---11B.1.1.3010.001179
ORF1ab/nsp3425L425MCtgAtg11B.1.1.3060.000438
ORF1ab/nsp3425L425LctGctT11B.1.1.3070.002532
ORF1ab/nsp3425L425LctGctT11B.1.1.3110.000358
ORF1ab/nsp3425L425QcTgcAg11B.1.1.3160.000925
ORF1ab/nsp3425L425PcTgcCg11B.1.1.3180.000302
ORF1ab/nsp3425L425LCtgTtg11B.1.1.3260.001761
ORF1ab/nsp3425L425delCTG---11B.1.1.330.000421
ORF1ab/nsp3425L425LctGctC11B.1.1.330.000421
ORF1ab/nsp3425L425LctGctT11B.1.1.3480.000796
ORF1ab/nsp3425L425VCtgGtg11B.1.1.3720.000689
ORF1ab/nsp3425L425LctGctT11B.1.1.3720.000689
ORF1ab/nsp3425L425LctGctA11B.1.1.3890.006061
ORF1ab/nsp3425L425LCtgTtg11B.1.1.4160.000905
ORF1ab/nsp3425L425LctGctT11B.1.1.4170.002703
ORF1ab/nsp3425L425LctGctT11B.1.1.4320.001266
ORF1ab/nsp3425L425delCTG---11B.1.1.5190.00004
ORF1ab/nsp3425L425LctGctT11B.1.1.5250.005464
ORF1ab/nsp3425L425LctGctT11B.1.1.560.017857
ORF1ab/nsp3425L425XCTGTAA11B.1.1.70.000001
ORF1ab/nsp3425L425LCtgTtg11B.1.1.700.000341
ORF1ab/nsp3425L425LCtgTtg11B.1.160.310.008065
ORF1ab/nsp3425L425delCTG---11B.1.160.320.004292
ORF1ab/nsp3425L425QcTgcAg11B.1.1770.000013
ORF1ab/nsp3425L425delCTG---11B.1.177.160.000664
ORF1ab/nsp3425L425delCTG---11B.1.177.40.000211
ORF1ab/nsp3425L425del2cTGc--11B.1.177.40.000211
ORF1ab/nsp3425L425LctGctT11B.1.177.650.000665
ORF1ab/nsp3425L425delCTG---11B.1.177.830.001481
ORF1ab/nsp3425L425LCtgTtg11B.1.177.860.000183
ORF1ab/nsp3425L425PcTgcCg11B.1.20.000009
ORF1ab/nsp3425L425QcTgcAg11B.1.20.000009
ORF1ab/nsp3425L425VCtgGtg11B.1.20.000009
ORF1ab/nsp3425L425RcTgcGg11B.1.20.000009
ORF1ab/nsp3425L425RcTgcGg11B.1.214.20.0006
ORF1ab/nsp3425L425delCTG---11B.1.2210.000071
ORF1ab/nsp3425L425PcTgcCg11B.1.2360.002053
ORF1ab/nsp3425L425LCtgTtg11B.1.2400.000216
ORF1ab/nsp3425L425LctGctT11B.1.2580.000067
ORF1ab/nsp3425L425delCTG---11B.1.2580.000067
ORF1ab/nsp3425L425LctGctT11B.1.258.140.00098
ORF1ab/nsp3425L425delCTG---11B.1.258.160.001637
ORF1ab/nsp3425L425LctGctA11B.1.258.170.000104
ORF1ab/nsp3425L425LCtgTtg11B.1.2600.003344
ORF1ab/nsp3425L425LctGctT11B.1.2980.002114
ORF1ab/nsp3425L425LCtgTtg11B.1.3500.002933
ORF1ab/nsp3425L425PcTgcCg11B.1.351.20.000303
ORF1ab/nsp3425L425LCtgTtg11B.1.351.20.000303
ORF1ab/nsp3425L425delCTG---11B.1.360.000146
ORF1ab/nsp3425L425LCtgTtg11B.1.36.160.001425
ORF1ab/nsp3425L425LCtgTtg11B.1.36.210.00216
ORF1ab/nsp3425L425LCtgTtg11B.1.36.220.001208
ORF1ab/nsp3425L425LctGctT11B.1.36.390.002217
ORF1ab/nsp3425L425LctGctT11B.1.3890.001002
ORF1ab/nsp3425L425delCTG---11B.1.4150.014286
ORF1ab/nsp3425L425LctGctA11B.1.4260.001009
ORF1ab/nsp3425L425PcTgcCg11B.1.4270.00005
ORF1ab/nsp3425L425delCTG---11B.1.4290.000024
ORF1ab/nsp3425L425QcTgcAg11B.1.4290.000024
ORF1ab/nsp3425L425LctGctT11B.1.4560.003268
ORF1ab/nsp3425L425LCtgTtg11B.1.466.20.000391
ORF1ab/nsp3425L425QcTgcAg11B.1.5250.000113
ORF1ab/nsp3425L425delCTG---11B.1.5260.000024
ORF1ab/nsp3425L425del1ctGct-11B.1.5260.000024
ORF1ab/nsp3425L425LctGctT11B.1.5380.008065
ORF1ab/nsp3425L425PcTgcCg11B.1.564.10.001577
ORF1ab/nsp3425L425LctGctA11B.1.5690.014493
ORF1ab/nsp3425L425LCtgTtg11B.1.575.10.002439
ORF1ab/nsp3425L425LCtgTtg11B.1.5770.000687
ORF1ab/nsp3425L425LCtgTtg11B.1.5950.000261
ORF1ab/nsp3425L425LCtgTtg11B.1.5960.000087
ORF1ab/nsp3425L425ICtGAtA11B.1.617.10.000129
ORF1ab/nsp3425L425LctGctT11B.1.621.10.000506
ORF1ab/nsp3425L425MCtgAtg11B.1.6230.000536
ORF1ab/nsp3425L425LCtgTtg11B.1.6230.000536
ORF1ab/nsp3425L425MCtgAtg11B.1.6310.003367
ORF1ab/nsp3425L425SCTgTCg11B.1.6370.000073
ORF1ab/nsp3425L425LctGctT11B.400.000364
ORF1ab/nsp3425L425delCTG---11B.570.015152
ORF1ab/nsp3425L425LCtgTtg11B.60.00091
ORF1ab/nsp3425L425LctGctT11B.6.30.026316
ORF1ab/nsp3425L425MCtgAtg11C.360.000911
ORF1ab/nsp3425L425LctGctA11C.36.30.000567
ORF1ab/nsp3425L425MCtgAtg11C.37.10.002618
ORF1ab/nsp3425L425LctGctT11P.1.150.000232
ORF1ab/nsp3425L425LctGctT11P.1.70.000319
ORF1ab/nsp3425L425PcTgcCg11P.20.000187
ORF1ab/nsp3425L425RcTgcGg11Q.30.000145
ORF1ab/nsp3425L425delCTG---11R.10.00009
ORF1ab/nsp3425L425PcTgcCg11R.10.00009
ORF1ab/nsp3425L425LCtgTtg11R.10.00009
ORF1ab/nsp3425L425delCTG---11U.30.003861

CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk

CoV-GLUE uses sequence data from GISAID. GISAID data provided via this web application is subject to GISAID's Terms and Conditions.