CoV-GLUEGenomeCountriesLineagesMutationsInsertionsDeletionsUpdated:

CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF1ab/nsp3 : CodonNum = 424

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF1ab/nsp3424T424IT1242InonsynaCtaTt237623740.9991583989-3991
ORF1ab/nsp3424T424IT1242InonsynaCTaTC237610.0004208753989-3991
ORF1ab/nsp3424T424IT1242InonsynaCTaTA237610.0004208753989-3991
ORF1ab/nsp3424T424NT1242NnonsynaCtaAt29129113989-3991
ORF1ab/nsp3424T424TT1242TsynacTacC2231500.6726463989-3991
ORF1ab/nsp3424T424TT1242TsynacTacG223620.2780273989-3991
ORF1ab/nsp3424T424TT1242TsynacTacA223110.04932743989-3991
ORF1ab/nsp3424T424AT1242AnonsynActGct929213989-3991
ORF1ab/nsp3424T424delT1242deldelACT---858513989-3991
ORF1ab/nsp3424T424PT1242PnonsynActCct181813989-3991
ORF1ab/nsp3424T424ST1242SnonsynActTct540.83989-3991
ORF1ab/nsp3424T424ST1242SnonsynaCtaGt510.23989-3991
ORF1ab/nsp3424T424del2T1242del2delaCTa--4413989-3991
ORF1ab/nsp3424T424del1T1242del1delacTac-210.53989-3991
ORF1ab/nsp3424T424del1T1242del1delaCta-t210.53989-3991

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF1ab/nsp3424T424IaCtaTt23742376All0.000454
ORF1ab/nsp3424T424IaCTaTA12376All0
ORF1ab/nsp3424T424IaCTaTC12376All0
ORF1ab/nsp3424T424IaCtaTt459460B.1.1.70.000411
ORF1ab/nsp3424T424IaCTaTA1460B.1.1.70.000001
ORF1ab/nsp3424T424NaCtaAt291291All0.000056
ORF1ab/nsp3424T424IaCtaTt241241AY.40.000375
ORF1ab/nsp3424T424TacTacC150223All0.000029
ORF1ab/nsp3424T424TacTacG62223All0.000012
ORF1ab/nsp3424T424TacTacA11223All0.000002
ORF1ab/nsp3424T424IaCtaTt161161B.10.001475
ORF1ab/nsp3424T424NaCtaAt140140B.1.1.70.000125
ORF1ab/nsp3424T424IaCtaTt119119B.1.617.20.000448
ORF1ab/nsp3424T424IaCtaTt100100B.1.1770.001317
ORF1ab/nsp3424T424AActGct9292All0.000018
ORF1ab/nsp3424T424IaCtaTt9192B.1.20.000801
ORF1ab/nsp3424T424IaCTaTC192B.1.20.000009
ORF1ab/nsp3424T424delACT---8585All0.000016
ORF1ab/nsp3424T424IaCtaTt7878B.1.10.001415
ORF1ab/nsp3424T424NaCtaAt6969AY.40.000107
ORF1ab/nsp3424T424IaCtaTt6565AY.430.000288
ORF1ab/nsp3424T424IaCtaTt6161AY.250.000367
ORF1ab/nsp3424T424IaCtaTt5656AY.4.20.001215
ORF1ab/nsp3424T424IaCtaTt5454B.1.258.170.005614
ORF1ab/nsp3424T424TacTacC4748B.1.20.000414
ORF1ab/nsp3424T424TacTacA148B.1.20.000009
ORF1ab/nsp3424T424TacTacC4545AY.240.019397
ORF1ab/nsp3424T424IaCtaTt4444AY.1030.000273
ORF1ab/nsp3424T424IaCtaTt4343AY.440.000262
ORF1ab/nsp3424T424IaCtaTt4242B.1.4270.002121
ORF1ab/nsp3424T424IaCtaTt4040P.20.007465
ORF1ab/nsp3424T424IaCtaTt3939AY.1200.00145
ORF1ab/nsp3424T424IaCtaTt3636B.1.4290.000847
ORF1ab/nsp3424T424IaCtaTt2929B.1.1.4320.036709
ORF1ab/nsp3424T424IaCtaTt2828P.10.000441
ORF1ab/nsp3424T424IaCtaTt2525AY.1020.000663
ORF1ab/nsp3424T424IaCtaTt2525AY.46.60.001805
ORF1ab/nsp3424T424IaCtaTt2424AY.70.004704
ORF1ab/nsp3424T424AActGct2424B.1.1.70.000021
ORF1ab/nsp3424T424IaCtaTt2323B.1.1.480.066092
ORF1ab/nsp3424T424IaCtaTt2121AY.200.000816
ORF1ab/nsp3424T424IaCtaTt2121AY.230.001465
ORF1ab/nsp3424T424TacTacG1620B.1.1.70.000014
ORF1ab/nsp3424T424TacTacC320B.1.1.70.000003
ORF1ab/nsp3424T424TacTacA120B.1.1.70.000001
ORF1ab/nsp3424T424AActGct2020B.1.1600.000624
ORF1ab/nsp3424T424PActCct1818All0.000003
ORF1ab/nsp3424T424delACT---1818B.1.1.70.000016
ORF1ab/nsp3424T424IaCtaTt1818B.1.3510.000535
ORF1ab/nsp3424T424IaCtaTt1616AY.1190.000565
ORF1ab/nsp3424T424IaCtaTt1616AY.260.000453
ORF1ab/nsp3424T424IaCtaTt1515B.1.5260.000353
ORF1ab/nsp3424T424TacTacC1114AY.40.000017
ORF1ab/nsp3424T424TacTacA214AY.40.000003
ORF1ab/nsp3424T424TacTacG114AY.40.000002
ORF1ab/nsp3424T424TacTacG1214B.1.1770.000158
ORF1ab/nsp3424T424TacTacA214B.1.1770.000026
ORF1ab/nsp3424T424IaCtaTt1313AY.390.000321
ORF1ab/nsp3424T424IaCtaTt1313AY.60.000535
ORF1ab/nsp3424T424IaCtaTt1313B.1.1.630.005015
ORF1ab/nsp3424T424NaCtaAt1313B.1.1770.000171
ORF1ab/nsp3424T424TacTacC712B.1.617.20.000026
ORF1ab/nsp3424T424TacTacG512B.1.617.20.000019
ORF1ab/nsp3424T424IaCtaTt1111AY.420.000443
ORF1ab/nsp3424T424IaCtaTt1010AY.30.000099
ORF1ab/nsp3424T424IaCtaTt1010AY.610.001048
ORF1ab/nsp3424T424AActGct1010B.1.5700.029412
ORF1ab/nsp3424T424IaCtaTt99B.1.1.5190.000357
ORF1ab/nsp3424T424IaCtaTt88AY.1000.000368
ORF1ab/nsp3424T424NaCtaAt88AY.1030.00005
ORF1ab/nsp3424T424IaCtaTt88AY.50.000165
ORF1ab/nsp3424T424TacTacC57AY.1210.000677
ORF1ab/nsp3424T424TacTacG27AY.1210.000271
ORF1ab/nsp3424T424IaCtaTt77AY.470.000218
ORF1ab/nsp3424T424IaCtaTt77AY.750.000392
ORF1ab/nsp3424T424PActCct77B.1.3960.00494
ORF1ab/nsp3424T424NaCtaAt77Q.80.001154
ORF1ab/nsp3424T424TacTacG56AY.1030.000031
ORF1ab/nsp3424T424TacTacC16AY.1030.000006
ORF1ab/nsp3424T424IaCtaTt66AY.1130.000854
ORF1ab/nsp3424T424IaCtaTt66AY.3.10.000512
ORF1ab/nsp3424T424IaCtaTt66AY.39.10.000238
ORF1ab/nsp3424T424delACT---66AY.40.000009
ORF1ab/nsp3424T424NaCtaAt66AY.510.005455
ORF1ab/nsp3424T424IaCtaTt66B.1.177.180.006961
ORF1ab/nsp3424T424IaCtaTt66B.1.351.20.001815
ORF1ab/nsp3424T424SActTct45All0.000001
ORF1ab/nsp3424T424SaCtaGt15All0
ORF1ab/nsp3424T424TacTacC35AY.250.000018
ORF1ab/nsp3424T424TacTacG25AY.250.000012
ORF1ab/nsp3424T424IaCtaTt55AY.290.000079
ORF1ab/nsp3424T424TacTacC35AY.430.000013
ORF1ab/nsp3424T424TacTacA15AY.430.000004
ORF1ab/nsp3424T424TacTacG15AY.430.000004
ORF1ab/nsp3424T424NaCtaAt55AZ.20.004105
ORF1ab/nsp3424T424TacTacG25B.10.000018
ORF1ab/nsp3424T424TacTacC25B.10.000018
ORF1ab/nsp3424T424TacTacA15B.10.000009
ORF1ab/nsp3424T424AActGct55B.1.1.4120.038168
ORF1ab/nsp3424T424IaCtaTt55B.1.1.4640.007364
ORF1ab/nsp3424T424IaCtaTt55B.1.1600.000156
ORF1ab/nsp3424T424IaCtaTt55B.1.177.190.007153
ORF1ab/nsp3424T424delACT---55B.1.617.20.000019
ORF1ab/nsp3424T424del2aCTa--44All0.000001
ORF1ab/nsp3424T424IaCtaTt44AY.1060.00134
ORF1ab/nsp3424T424AActGct44AY.320.00213
ORF1ab/nsp3424T424IaCtaTt44AY.340.000388
ORF1ab/nsp3424T424NaCtaAt44AY.430.000018
ORF1ab/nsp3424T424AActGct44AY.440.000024
ORF1ab/nsp3424T424IaCtaTt44AY.460.000416
ORF1ab/nsp3424T424IaCtaTt44AY.46.50.000794
ORF1ab/nsp3424T424IaCtaTt44AY.480.00186
ORF1ab/nsp3424T424IaCtaTt44AY.980.000316
ORF1ab/nsp3424T424IaCtaTt44AY.98.10.000194
ORF1ab/nsp3424T424AActGct44B.1.1.1290.036697
ORF1ab/nsp3424T424IaCtaTt44B.1.1.330.001684
ORF1ab/nsp3424T424IaCtaTt44B.1.1.4310.064516
ORF1ab/nsp3424T424IaCtaTt44B.1.110.20.666667
ORF1ab/nsp3424T424IaCtaTt44B.1.360.000584
ORF1ab/nsp3424T424IaCtaTt44B.1.5170.001708
ORF1ab/nsp3424T424IaCtaTt44B.1.5250.000453
ORF1ab/nsp3424T424IaCtaTt44B.1.5610.001588
ORF1ab/nsp3424T424NaCtaAt44B.1.617.20.000015
ORF1ab/nsp3424T424IaCtaTt33AY.16.10.00141
ORF1ab/nsp3424T424IaCtaTt33AY.190.003421
ORF1ab/nsp3424T424TacTacG23AY.30.00002
ORF1ab/nsp3424T424TacTacC13AY.30.00001
ORF1ab/nsp3424T424IaCtaTt33AY.330.0002
ORF1ab/nsp3424T424NaCtaAt33AY.39.10.000119
ORF1ab/nsp3424T424delACT---33AY.4.50.000322
ORF1ab/nsp3424T424NaCtaAt33AY.440.000018
ORF1ab/nsp3424T424TacTacG23AY.440.000012
ORF1ab/nsp3424T424TacTacC13AY.440.000006
ORF1ab/nsp3424T424IaCtaTt33AY.5.30.001012
ORF1ab/nsp3424T424IaCtaTt33AY.630.001161
ORF1ab/nsp3424T424IaCtaTt33AY.740.000347
ORF1ab/nsp3424T424IaCtaTt33AY.90.000203
ORF1ab/nsp3424T424IaCtaTt33AY.920.000862
ORF1ab/nsp3424T424IaCtaTt33B0.000383
ORF1ab/nsp3424T424delACT---33B.10.000027
ORF1ab/nsp3424T424IaCtaTt33B.1.1.1890.004539
ORF1ab/nsp3424T424IaCtaTt33B.1.177.400.015464
ORF1ab/nsp3424T424IaCtaTt33B.1.177.570.000843
ORF1ab/nsp3424T424delACT---33B.1.20.000026
ORF1ab/nsp3424T424IaCtaTt33B.1.36.170.001482
ORF1ab/nsp3424T424delACT---33B.1.5960.000261
ORF1ab/nsp3424T424IaCtaTt33B.1.5960.000261
ORF1ab/nsp3424T424SActTct23B.1.617.20.000008
ORF1ab/nsp3424T424SaCtaGt13B.1.617.20.000004
ORF1ab/nsp3424T424TacTacG33B.1.6200.002838
ORF1ab/nsp3424T424AActGct33P.10.000047
ORF1ab/nsp3424T424NaCtaAt33P.10.000047
ORF1ab/nsp3424T424del1aCta-t12All0
ORF1ab/nsp3424T424del1acTac-12All0
ORF1ab/nsp3424T424IaCtaTt22AY.1160.000574
ORF1ab/nsp3424T424AActGct22AY.1200.000074
ORF1ab/nsp3424T424IaCtaTt22AY.120.2.10.000997
ORF1ab/nsp3424T424TacTacG22AY.160.000759
ORF1ab/nsp3424T424AActGct22AY.200.000078
ORF1ab/nsp3424T424NaCtaAt22AY.250.000012
ORF1ab/nsp3424T424IaCtaTt22AY.320.001065
ORF1ab/nsp3424T424IaCtaTt22AY.350.000466
ORF1ab/nsp3424T424NaCtaAt22AY.390.000049
ORF1ab/nsp3424T424delACT---22AY.430.000009
ORF1ab/nsp3424T424IaCtaTt22AY.450.000243
ORF1ab/nsp3424T424NaCtaAt22AY.450.000243
ORF1ab/nsp3424T424NaCtaAt22AY.46.20.001271
ORF1ab/nsp3424T424TacTacC22AY.50.000041
ORF1ab/nsp3424T424IaCtaTt22AY.530.000575
ORF1ab/nsp3424T424IaCtaTt22AY.580.001815
ORF1ab/nsp3424T424IaCtaTt22AY.670.000929
ORF1ab/nsp3424T424IaCtaTt22AY.75.10.000361
ORF1ab/nsp3424T424IaCtaTt22AY.9.2.10.003953
ORF1ab/nsp3424T424NaCtaAt22B.10.000018
ORF1ab/nsp3424T424PActCct22B.10.000018
ORF1ab/nsp3424T424NaCtaAt22B.1.10.000036
ORF1ab/nsp3424T424delACT---22B.1.10.000036
ORF1ab/nsp3424T424TacTacC12B.1.10.000018
ORF1ab/nsp3424T424TacTacA12B.1.10.000018
ORF1ab/nsp3424T424delACT---22B.1.1.2220.000408
ORF1ab/nsp3424T424delACT---22B.1.1.2320.00363
ORF1ab/nsp3424T424IaCtaTt22B.1.1.280.000622
ORF1ab/nsp3424T424AActGct22B.1.1.5190.000079
ORF1ab/nsp3424T424NaCtaAt22B.1.1.5190.000079
ORF1ab/nsp3424T424del2aCTa--22B.1.1.70.000002
ORF1ab/nsp3424T424delACT---22B.1.1770.000026
ORF1ab/nsp3424T424PActCct22B.1.20.000018
ORF1ab/nsp3424T424TacTacC22B.1.2430.000139
ORF1ab/nsp3424T424AActGct22B.1.2430.000139
ORF1ab/nsp3424T424IaCtaTt22B.1.2580.000133
ORF1ab/nsp3424T424delACT---22B.1.258.170.000208
ORF1ab/nsp3424T424IaCtaTt22B.1.36.290.001035
ORF1ab/nsp3424T424IaCtaTt22B.1.4280.002041
ORF1ab/nsp3424T424IaCtaTt22B.1.438.10.000215
ORF1ab/nsp3424T424IaCtaTt22B.1.5750.000607
ORF1ab/nsp3424T424IaCtaTt22B.1.6090.000959
ORF1ab/nsp3424T424del2aCTa--22B.1.617.20.000008
ORF1ab/nsp3424T424IaCtaTt22B.1.6210.000177
ORF1ab/nsp3424T424delACT---22B.1.6210.000177
ORF1ab/nsp3424T424IaCtaTt22D.20.00015
ORF1ab/nsp3424T424delACT---22P.10.000032
ORF1ab/nsp3424T424delACT---22P.1.120.000968
ORF1ab/nsp3424T424IaCtaTt22P.1.170.000324
ORF1ab/nsp3424T424IaCtaTt22P.30.00319
ORF1ab/nsp3424T424IaCtaTt22Q.80.00033
ORF1ab/nsp3424T424IaCtaTt11A.10.000282
ORF1ab/nsp3424T424TacTacC11A.2.50.000499
ORF1ab/nsp3424T424IaCtaTt11A.23.10.000704
ORF1ab/nsp3424T424IaCtaTt11A.40.012821
ORF1ab/nsp3424T424TacTacC11AE.80.000489
ORF1ab/nsp3424T424IaCtaTt11AU.30.00211
ORF1ab/nsp3424T424TacTacC11AY.1000.000046
ORF1ab/nsp3424T424NaCtaAt11AY.1020.000027
ORF1ab/nsp3424T424TacTacG11AY.1020.000027
ORF1ab/nsp3424T424IaCtaTt11AY.1050.000643
ORF1ab/nsp3424T424IaCtaTt11AY.1080.001103
ORF1ab/nsp3424T424IaCtaTt11AY.1090.00074
ORF1ab/nsp3424T424IaCtaTt11AY.1110.000183
ORF1ab/nsp3424T424TacTacC11AY.1130.000142
ORF1ab/nsp3424T424IaCtaTt11AY.1140.000231
ORF1ab/nsp3424T424IaCtaTt11AY.1170.000085
ORF1ab/nsp3424T424IaCtaTt11AY.1180.000063
ORF1ab/nsp3424T424delACT---11AY.1190.000035
ORF1ab/nsp3424T424IaCtaTt11AY.1210.000135
ORF1ab/nsp3424T424IaCtaTt11AY.130.000161
ORF1ab/nsp3424T424IaCtaTt11AY.140.000088
ORF1ab/nsp3424T424NaCtaAt11AY.260.000028
ORF1ab/nsp3424T424NaCtaAt11AY.270.000065
ORF1ab/nsp3424T424AActGct11AY.270.000065
ORF1ab/nsp3424T424IaCtaTt11AY.270.000065
ORF1ab/nsp3424T424NaCtaAt11AY.30.00001
ORF1ab/nsp3424T424AActGct11AY.3.10.000085
ORF1ab/nsp3424T424IaCtaTt11AY.34.10.00051
ORF1ab/nsp3424T424TacTacG11AY.34.10.00051
ORF1ab/nsp3424T424delACT---11AY.360.000148
ORF1ab/nsp3424T424PActCct11AY.390.000025
ORF1ab/nsp3424T424IaCtaTt11AY.39.1.10.000725
ORF1ab/nsp3424T424PActCct11AY.40.000002
ORF1ab/nsp3424T424AActGct11AY.40.000002
ORF1ab/nsp3424T424TacTacC11AY.4.20.000022
ORF1ab/nsp3424T424PActCct11AY.46.60.000072
ORF1ab/nsp3424T424delACT---11AY.46.60.000072
ORF1ab/nsp3424T424IaCtaTt11AY.540.000095
ORF1ab/nsp3424T424IaCtaTt11AY.590.00053
ORF1ab/nsp3424T424TacTacC11AY.590.00053
ORF1ab/nsp3424T424TacTacC11AY.60.000041
ORF1ab/nsp3424T424TacTacG11AY.610.000105
ORF1ab/nsp3424T424IaCtaTt11AY.650.000533
ORF1ab/nsp3424T424IaCtaTt11AY.680.000274
ORF1ab/nsp3424T424delACT---11AY.720.001361
ORF1ab/nsp3424T424IaCtaTt11AY.730.000665
ORF1ab/nsp3424T424AActGct11AY.750.000056
ORF1ab/nsp3424T424delACT---11AY.75.10.00018
ORF1ab/nsp3424T424TacTacC11AY.790.001211
ORF1ab/nsp3424T424IaCtaTt11AY.840.000437
ORF1ab/nsp3424T424IaCtaTt11AY.870.000833
ORF1ab/nsp3424T424AActGct11AY.870.000833
ORF1ab/nsp3424T424IaCtaTt11AY.9.10.000084
ORF1ab/nsp3424T424NaCtaAt11AY.98.10.000048
ORF1ab/nsp3424T424delACT---11B0.000128
ORF1ab/nsp3424T424AActGct11B.10.000009
ORF1ab/nsp3424T424AActGct11B.1.10.000018
ORF1ab/nsp3424T424NaCtaAt11B.1.1.10.000327
ORF1ab/nsp3424T424delACT---11B.1.1.10.000327
ORF1ab/nsp3424T424IaCtaTt11B.1.1.1350.004695
ORF1ab/nsp3424T424IaCtaTt11B.1.1.1610.003534
ORF1ab/nsp3424T424delACT---11B.1.1.1920.002309
ORF1ab/nsp3424T424IaCtaTt11B.1.1.2040.00304
ORF1ab/nsp3424T424IaCtaTt11B.1.1.2140.000055
ORF1ab/nsp3424T424NaCtaAt11B.1.1.2530.002506
ORF1ab/nsp3424T424IaCtaTt11B.1.1.260.005236
ORF1ab/nsp3424T424TacTacG11B.1.1.280.000311
ORF1ab/nsp3424T424IaCtaTt11B.1.1.2840.000107
ORF1ab/nsp3424T424delACT---11B.1.1.3010.001179
ORF1ab/nsp3424T424IaCtaTt11B.1.1.3060.000438
ORF1ab/nsp3424T424IaCtaTt11B.1.1.3080.011765
ORF1ab/nsp3424T424IaCtaTt11B.1.1.3180.000302
ORF1ab/nsp3424T424TacTacC11B.1.1.3260.001761
ORF1ab/nsp3424T424PActCct11B.1.1.330.000421
ORF1ab/nsp3424T424delACT---11B.1.1.330.000421
ORF1ab/nsp3424T424delACT---11B.1.1.3370.003597
ORF1ab/nsp3424T424IaCtaTt11B.1.1.3480.000796
ORF1ab/nsp3424T424IaCtaTt11B.1.1.370.000193
ORF1ab/nsp3424T424AActGct11B.1.1.370.000193
ORF1ab/nsp3424T424IaCtaTt11B.1.1.3740.002375
ORF1ab/nsp3424T424IaCtaTt11B.1.1.390.00051
ORF1ab/nsp3424T424IaCtaTt11B.1.1.4160.000905
ORF1ab/nsp3424T424IaCtaTt11B.1.1.500.000679
ORF1ab/nsp3424T424delACT---11B.1.1.5190.00004
ORF1ab/nsp3424T424TacTacC11B.1.1.5190.00004
ORF1ab/nsp3424T424AActGct11B.1.1.540.003021
ORF1ab/nsp3424T424PActCct11B.1.1.70.000001
ORF1ab/nsp3424T424IaCtaTt11B.1.1.700.000341
ORF1ab/nsp3424T424SActTct11B.1.1.80.003584
ORF1ab/nsp3424T424TacTacC11B.1.110.30.000718
ORF1ab/nsp3424T424IaCtaTt11B.1.1130.015625
ORF1ab/nsp3424T424delACT---11B.1.160.320.004292
ORF1ab/nsp3424T424del1acTac-11B.1.1770.000013
ORF1ab/nsp3424T424IaCtaTt11B.1.177.120.000152
ORF1ab/nsp3424T424delACT---11B.1.177.160.000664
ORF1ab/nsp3424T424IaCtaTt11B.1.177.210.000076
ORF1ab/nsp3424T424IaCtaTt11B.1.177.230.003236
ORF1ab/nsp3424T424IaCtaTt11B.1.177.350.000691
ORF1ab/nsp3424T424delACT---11B.1.177.40.000211
ORF1ab/nsp3424T424IaCtaTt11B.1.177.520.001757
ORF1ab/nsp3424T424IaCtaTt11B.1.177.560.000668
ORF1ab/nsp3424T424IaCtaTt11B.1.177.650.000665
ORF1ab/nsp3424T424IaCtaTt11B.1.177.730.000566
ORF1ab/nsp3424T424delACT---11B.1.177.830.001481
ORF1ab/nsp3424T424TacTacC11B.1.177.870.000728
ORF1ab/nsp3424T424AActGct11B.1.20.000009
ORF1ab/nsp3424T424IaCtaTt11B.1.2060.000816
ORF1ab/nsp3424T424IaCtaTt11B.1.2100.002132
ORF1ab/nsp3424T424TacTacG11B.1.214.20.0006
ORF1ab/nsp3424T424delACT---11B.1.2210.000071
ORF1ab/nsp3424T424NaCtaAt11B.1.2220.001692
ORF1ab/nsp3424T424IaCtaTt11B.1.2340.000132
ORF1ab/nsp3424T424IaCtaTt11B.1.2400.000216
ORF1ab/nsp3424T424IaCtaTt11B.1.2430.00007
ORF1ab/nsp3424T424delACT---11B.1.2580.000067
ORF1ab/nsp3424T424IaCtaTt11B.1.258.140.00098
ORF1ab/nsp3424T424delACT---11B.1.258.160.001637
ORF1ab/nsp3424T424IaCtaTt11B.1.3260.007576
ORF1ab/nsp3424T424IaCtaTt11B.1.3380.008621
ORF1ab/nsp3424T424IaCtaTt11B.1.3490.000715
ORF1ab/nsp3424T424delACT---11B.1.360.000146
ORF1ab/nsp3424T424NaCtaAt11B.1.36.10.00114
ORF1ab/nsp3424T424IaCtaTt11B.1.36.160.001425
ORF1ab/nsp3424T424IaCtaTt11B.1.36.220.001208
ORF1ab/nsp3424T424IaCtaTt11B.1.36.390.002217
ORF1ab/nsp3424T424IaCtaTt11B.1.36.80.001
ORF1ab/nsp3424T424IaCtaTt11B.1.3610.001289
ORF1ab/nsp3424T424IaCtaTt11B.1.3890.001002
ORF1ab/nsp3424T424TacTacA11B.1.3960.000706
ORF1ab/nsp3424T424IaCtaTt11B.1.3960.000706
ORF1ab/nsp3424T424IaCtaTt11B.1.3990.001934
ORF1ab/nsp3424T424IaCtaTt11B.1.4000.000429
ORF1ab/nsp3424T424delACT---11B.1.4150.014286
ORF1ab/nsp3424T424TacTacA11B.1.4270.00005
ORF1ab/nsp3424T424delACT---11B.1.4290.000024
ORF1ab/nsp3424T424TacTacC11B.1.4290.000024
ORF1ab/nsp3424T424IaCtaTt11B.1.4590.004082
ORF1ab/nsp3424T424IaCtaTt11B.1.466.20.000391
ORF1ab/nsp3424T424TacTacG11B.1.466.20.000391
ORF1ab/nsp3424T424IaCtaTt11B.1.5100.026316
ORF1ab/nsp3424T424PActCct11B.1.5260.000024
ORF1ab/nsp3424T424delACT---11B.1.5260.000024
ORF1ab/nsp3424T424TacTacG11B.1.5430.01
ORF1ab/nsp3424T424IaCtaTt11B.1.5680.001111
ORF1ab/nsp3424T424IaCtaTt11B.1.5950.000261
ORF1ab/nsp3424T424TacTacC11B.1.5960.000087
ORF1ab/nsp3424T424del1aCta-t11B.1.617.10.000129
ORF1ab/nsp3424T424NaCtaAt11B.1.617.10.000129
ORF1ab/nsp3424T424PActCct11B.1.617.20.000004
ORF1ab/nsp3424T424TacTacC11B.1.619.10.000641
ORF1ab/nsp3424T424IaCtaTt11B.1.619.10.000641
ORF1ab/nsp3424T424IaCtaTt11B.1.6270.00202
ORF1ab/nsp3424T424IaCtaTt11B.1.700.02439
ORF1ab/nsp3424T424IaCtaTt11B.1.90.006173
ORF1ab/nsp3424T424delACT---11B.570.015152
ORF1ab/nsp3424T424NaCtaAt11B.60.00091
ORF1ab/nsp3424T424IaCtaTt11B.60.00091
ORF1ab/nsp3424T424SActTct11B.60.00091
ORF1ab/nsp3424T424TacTacC11B.6.60.000889
ORF1ab/nsp3424T424IaCtaTt11C.370.000116
ORF1ab/nsp3424T424IaCtaTt11N.50.001767
ORF1ab/nsp3424T424IaCtaTt11P.1.140.000048
ORF1ab/nsp3424T424IaCtaTt11Q.10.000126
ORF1ab/nsp3424T424IaCtaTt11Q.40.000455
ORF1ab/nsp3424T424delACT---11R.10.00009
ORF1ab/nsp3424T424NaCtaAt11R.10.00009
ORF1ab/nsp3424T424delACT---11U.30.003861

CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk

CoV-GLUE uses sequence data from GISAID. GISAID data provided via this web application is subject to GISAID's Terms and Conditions.