CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF1ab/nsp3 : CodonNum = 42

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF1ab/nsp342Y42YY860YsyntaTtaC1213121312843-2845
ORF1ab/nsp342Y42delY860deldelTAT---373712843-2845
ORF1ab/nsp342Y42HY860HnonsynTatCat333312843-2845
ORF1ab/nsp342Y42CY860CnonsyntAttGt252512843-2845
ORF1ab/nsp342Y42LY860LnonsyntATtTA940.4444442843-2845
ORF1ab/nsp342Y42LY860LnonsynTAtCTt930.3333332843-2845
ORF1ab/nsp342Y42LY860LnonsynTATCTA920.2222222843-2845
ORF1ab/nsp342Y42NY860NnonsynTatAat870.8752843-2845
ORF1ab/nsp342Y42NY860NnonsynTaTAaC810.1252843-2845
ORF1ab/nsp342Y42XY860XnonsyntaTtaA7712843-2845
ORF1ab/nsp342Y42FY860FnonsyntAttTt6612843-2845
ORF1ab/nsp342Y42del1Y860del1deltaTta-5512843-2845
ORF1ab/nsp342Y42DY860DnonsynTatGat3312843-2845
ORF1ab/nsp342Y42SY860SnonsyntAttCt3312843-2845
ORF1ab/nsp342Y42PY860PnonsynTAtCCt3312843-2845
ORF1ab/nsp342Y42QY860QnonsynTaTCaA2212843-2845
ORF1ab/nsp342Y42KY860KnonsynTaTAaA2212843-2845
ORF1ab/nsp342Y42VY860VnonsynTATGTA210.52843-2845
ORF1ab/nsp342Y42VY860VnonsynTAtGTt210.52843-2845
ORF1ab/nsp342Y42IY860InonsynTATATA210.52843-2845
ORF1ab/nsp342Y42IY860InonsynTAtATt210.52843-2845
ORF1ab/nsp342Y42EY860EnonsynTaTGaA1112843-2845
ORF1ab/nsp342Y42del2Y860del2delTAt--t1112843-2845

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF1ab/nsp342Y42YtaTtaC12131213All0.000232
ORF1ab/nsp342Y42YtaTtaC426426AY.1030.002645
ORF1ab/nsp342Y42YtaTtaC163163B.10.001493
ORF1ab/nsp342Y42YtaTtaC108108B.1.1.70.000097
ORF1ab/nsp342Y42YtaTtaC9696B.1.4010.786885
ORF1ab/nsp342Y42YtaTtaC8484AY.40.000131
ORF1ab/nsp342Y42YtaTtaC5353B.1.617.20.0002
ORF1ab/nsp342Y42delTAT---3737All0.000007
ORF1ab/nsp342Y42HTatCat3333All0.000006
ORF1ab/nsp342Y42YtaTtaC3232AY.330.002137
ORF1ab/nsp342Y42CtAttGt2525All0.000005
ORF1ab/nsp342Y42YtaTtaC2222B.1.360.00321
ORF1ab/nsp342Y42YtaTtaC2020AY.250.00012
ORF1ab/nsp342Y42YtaTtaC1414AY.440.000085
ORF1ab/nsp342Y42YtaTtaC1414AY.730.009315
ORF1ab/nsp342Y42YtaTtaC1212AY.430.000053
ORF1ab/nsp342Y42YtaTtaC1111B.1.1.250.006254
ORF1ab/nsp342Y42LtATtTA49All0.000001
ORF1ab/nsp342Y42LTAtCTt39All0.000001
ORF1ab/nsp342Y42LTATCTA29All0
ORF1ab/nsp342Y42YtaTtaC99B.1.4000.003861
ORF1ab/nsp342Y42YtaTtaC99B.1.6210.000797
ORF1ab/nsp342Y42NTatAat78All0.000001
ORF1ab/nsp342Y42NTaTAaC18All0
ORF1ab/nsp342Y42YtaTtaC88B.1.1.2140.000444
ORF1ab/nsp342Y42XtaTtaA77All0.000001
ORF1ab/nsp342Y42CtAttGt77AY.690.001307
ORF1ab/nsp342Y42YtaTtaC77B.1.2210.000497
ORF1ab/nsp342Y42YtaTtaC77B.1.258.140.006863
ORF1ab/nsp342Y42FtAttTt66All0.000001
ORF1ab/nsp342Y42YtaTtaC66AY.4.20.00013
ORF1ab/nsp342Y42del1taTta-55All0.000001
ORF1ab/nsp342Y42YtaTtaC55AY.1180.000313
ORF1ab/nsp342Y42YtaTtaC55AY.1190.000177
ORF1ab/nsp342Y42HTatCat55AY.99.20.000461
ORF1ab/nsp342Y42delTAT---55B.10.000046
ORF1ab/nsp342Y42delTAT---55B.1.1.70.000004
ORF1ab/nsp342Y42del1taTta-55B.1.360.00073
ORF1ab/nsp342Y42CtAttGt55B.1.617.20.000019
ORF1ab/nsp342Y42YtaTtaC55P.1.70.001596
ORF1ab/nsp342Y42delTAT---440.222222
ORF1ab/nsp342Y42LtATtTA240.111111
ORF1ab/nsp342Y42LTAtCTt140.055556
ORF1ab/nsp342Y42LTATCTA140.055556
ORF1ab/nsp342Y42YtaTtaC44AY.1210.000541
ORF1ab/nsp342Y42YtaTtaC44B.1.10.000073
ORF1ab/nsp342Y42HTatCat44B.1.1.70.000004
ORF1ab/nsp342Y42LtATtTA24B.1.2210.000142
ORF1ab/nsp342Y42LTAtCTt14B.1.2210.000071
ORF1ab/nsp342Y42LTATCTA14B.1.2210.000071
ORF1ab/nsp342Y42YtaTtaC44B.1.5260.000094
ORF1ab/nsp342Y42HTatCat330.166667
ORF1ab/nsp342Y42XtaTtaA330.166667
ORF1ab/nsp342Y42NTatAat330.166667
ORF1ab/nsp342Y42StAttCt33All0.000001
ORF1ab/nsp342Y42DTatGat33All0.000001
ORF1ab/nsp342Y42PTAtCCt33All0.000001
ORF1ab/nsp342Y42YtaTtaC33AY.60.000123
ORF1ab/nsp342Y42YtaTtaC33AY.670.001393
ORF1ab/nsp342Y42YtaTtaC33AY.9.20.00011
ORF1ab/nsp342Y42YtaTtaC33AY.99.20.000276
ORF1ab/nsp342Y42delTAT---33B.1.1.330.001263
ORF1ab/nsp342Y42YtaTtaC33B.1.1.330.001263
ORF1ab/nsp342Y42delTAT---33B.1.1.3480.002389
ORF1ab/nsp342Y42CtAttGt33B.1.1.70.000003
ORF1ab/nsp342Y42YtaTtaC33B.1.466.20.001174
ORF1ab/nsp342Y42YtaTtaC33B.1.617.10.000387
ORF1ab/nsp342Y42YtaTtaC33P.10.000047
ORF1ab/nsp342Y42PTAtCCt220.111111
ORF1ab/nsp342Y42StAttCt220.111111
ORF1ab/nsp342Y42FtAttTt220.111111
ORF1ab/nsp342Y42KTaTAaA220.111111
ORF1ab/nsp342Y42ITATATA120.055556
ORF1ab/nsp342Y42ITAtATt120.055556
ORF1ab/nsp342Y42KTaTAaA22All0
ORF1ab/nsp342Y42QTaTCaA22All0
ORF1ab/nsp342Y42VTAtGTt12All0
ORF1ab/nsp342Y42VTATGTA12All0
ORF1ab/nsp342Y42ITATATA12All0
ORF1ab/nsp342Y42ITAtATt12All0
ORF1ab/nsp342Y42YtaTtaC22AY.1020.000053
ORF1ab/nsp342Y42YtaTtaC22AY.1130.000285
ORF1ab/nsp342Y42CtAttGt22AY.1190.000071
ORF1ab/nsp342Y42YtaTtaC22AY.1200.000074
ORF1ab/nsp342Y42YtaTtaC22AY.140.000176
ORF1ab/nsp342Y42YtaTtaC22AY.200.000078
ORF1ab/nsp342Y42HTatCat22AY.250.000012
ORF1ab/nsp342Y42YtaTtaC22AY.3.10.000171
ORF1ab/nsp342Y42HTatCat22AY.4.20.000043
ORF1ab/nsp342Y42HTatCat22AY.440.000012
ORF1ab/nsp342Y42YtaTtaC22AY.540.000191
ORF1ab/nsp342Y42YtaTtaC22AY.98.10.000097
ORF1ab/nsp342Y42YtaTtaC22B.1.1.2220.000408
ORF1ab/nsp342Y42YtaTtaC22B.1.1.2910.001485
ORF1ab/nsp342Y42YtaTtaC22B.1.1.3180.000604
ORF1ab/nsp342Y42HTatCat22B.1.1.3480.001592
ORF1ab/nsp342Y42YtaTtaC22B.1.1600.000062
ORF1ab/nsp342Y42YtaTtaC22B.1.1770.000026
ORF1ab/nsp342Y42HTatCat22B.1.20.000018
ORF1ab/nsp342Y42YtaTtaC22B.1.20.000018
ORF1ab/nsp342Y42FtAttTt22B.1.2210.000142
ORF1ab/nsp342Y42XtaTtaA22B.1.2210.000142
ORF1ab/nsp342Y42VTAtGTt12B.1.2210.000071
ORF1ab/nsp342Y42VTATGTA12B.1.2210.000071
ORF1ab/nsp342Y42YtaTtaC22B.1.3510.000059
ORF1ab/nsp342Y42delTAT---22B.1.4240.016129
ORF1ab/nsp342Y42YtaTtaC22B.1.4290.000047
ORF1ab/nsp342Y42delTAT---22B.1.4290.000047
ORF1ab/nsp342Y42delTAT---22N.60.014184
ORF1ab/nsp342Y42delTAT---22P.10.000032
ORF1ab/nsp342Y42YtaTtaC22P.20.000373
ORF1ab/nsp342Y42QTaTCaA110.055556
ORF1ab/nsp342Y42YtaTtaC11A.20.000662
ORF1ab/nsp342Y42NTatAat11A.2.40.003367
ORF1ab/nsp342Y42YtaTtaC11A.2.50.000499
ORF1ab/nsp342Y42CtAttGt11A.30.002096
ORF1ab/nsp342Y42YtaTtaC11A.50.001923
ORF1ab/nsp342Y42ETaTGaA11All0
ORF1ab/nsp342Y42del2TAt--t11All0
ORF1ab/nsp342Y42HTatCat11AY.1030.000006
ORF1ab/nsp342Y42YtaTtaC11AY.1040.001984
ORF1ab/nsp342Y42HTatCat11AY.120.000316
ORF1ab/nsp342Y42YtaTtaC11AY.120.10.000321
ORF1ab/nsp342Y42YtaTtaC11AY.130.000161
ORF1ab/nsp342Y42HTatCat11AY.230.00007
ORF1ab/nsp342Y42CtAttGt11AY.250.000006
ORF1ab/nsp342Y42HTatCat11AY.260.000028
ORF1ab/nsp342Y42YtaTtaC11AY.290.000016
ORF1ab/nsp342Y42HTatCat11AY.30.00001
ORF1ab/nsp342Y42CtAttGt11AY.40.000002
ORF1ab/nsp342Y42CtAttGt11AY.430.000004
ORF1ab/nsp342Y42CtAttGt11AY.46.60.000072
ORF1ab/nsp342Y42HTatCat11AY.470.000031
ORF1ab/nsp342Y42delTAT---11AY.60.000041
ORF1ab/nsp342Y42StAttCt11AY.670.000464
ORF1ab/nsp342Y42YtaTtaC11AY.70.000196
ORF1ab/nsp342Y42YtaTtaC11AY.740.000116
ORF1ab/nsp342Y42FtAttTt11AY.750.000056
ORF1ab/nsp342Y42YtaTtaC11AY.770.001127
ORF1ab/nsp342Y42YtaTtaC11AY.90.000068
ORF1ab/nsp342Y42delTAT---11AY.9.20.000037
ORF1ab/nsp342Y42YtaTtaC11AY.990.001049
ORF1ab/nsp342Y42NTatAat11B.10.000009
ORF1ab/nsp342Y42del2TAt--t11B.10.000009
ORF1ab/nsp342Y42XtaTtaA11B.1.10.000018
ORF1ab/nsp342Y42delTAT---11B.1.10.000018
ORF1ab/nsp342Y42NTatAat11B.1.10.000018
ORF1ab/nsp342Y42HTatCat11B.1.1.2140.000055
ORF1ab/nsp342Y42YtaTtaC11B.1.1.3260.001761
ORF1ab/nsp342Y42delTAT---11B.1.1.4160.000905
ORF1ab/nsp342Y42NTatAat11B.1.1.500.000679
ORF1ab/nsp342Y42YtaTtaC11B.1.1.5230.001563
ORF1ab/nsp342Y42DTatGat11B.1.1.70.000001
ORF1ab/nsp342Y42delTAT---11B.1.1.700.000341
ORF1ab/nsp342Y42FtAttTt11B.1.1600.000031
ORF1ab/nsp342Y42YtaTtaC11B.1.1690.014925
ORF1ab/nsp342Y42DTatGat11B.1.1770.000013
ORF1ab/nsp342Y42YtaTtaC11B.1.177.50.001242
ORF1ab/nsp342Y42delTAT---11B.1.177.510.004566
ORF1ab/nsp342Y42PTAtCCt11B.1.20.000009
ORF1ab/nsp342Y42delTAT---11B.1.20.000009
ORF1ab/nsp342Y42CtAttGt11B.1.20.000009
ORF1ab/nsp342Y42XtaTtaA11B.1.20.000009
ORF1ab/nsp342Y42QTaTCaA11B.1.2210.000071
ORF1ab/nsp342Y42DTatGat11B.1.2210.000071
ORF1ab/nsp342Y42HTatCat11B.1.2210.000071
ORF1ab/nsp342Y42ETaTGaA11B.1.2210.000071
ORF1ab/nsp342Y42YtaTtaC11B.1.221.30.000833
ORF1ab/nsp342Y42YtaTtaC11B.1.2430.00007
ORF1ab/nsp342Y42YtaTtaC11B.1.2580.000067
ORF1ab/nsp342Y42HTatCat11B.1.3110.000275
ORF1ab/nsp342Y42YtaTtaC11B.1.3480.018182
ORF1ab/nsp342Y42YtaTtaC11B.1.36.290.000517
ORF1ab/nsp342Y42YtaTtaC11B.1.36.360.000602
ORF1ab/nsp342Y42NTaTAaC11B.1.3750.00082
ORF1ab/nsp342Y42CtAttGt11B.1.4290.000024
ORF1ab/nsp342Y42CtAttGt11B.1.5260.000024
ORF1ab/nsp342Y42YtaTtaC11B.1.5510.00129
ORF1ab/nsp342Y42delTAT---11B.1.5610.000397
ORF1ab/nsp342Y42YtaTtaC11B.1.6090.000479
ORF1ab/nsp342Y42HTatCat11B.1.617.20.000004
ORF1ab/nsp342Y42LTAtCTt11B.1.617.20.000004
ORF1ab/nsp342Y42HTatCat11B.1.6210.000089
ORF1ab/nsp342Y42YtaTtaC11B.390.002331
ORF1ab/nsp342Y42delTAT---11B.570.015152
ORF1ab/nsp342Y42YtaTtaC11C.350.000774
ORF1ab/nsp342Y42YtaTtaC11N.90.005952