CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF1ab/nsp3 : CodonNum = 415

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF1ab/nsp3415K415KK1233KsynaaAaaG1908190813962-3964
ORF1ab/nsp3415K415RK1233RnonsynaAaaGa26226213962-3964
ORF1ab/nsp3415K415QK1233QnonsynAaaCaa15015013962-3964
ORF1ab/nsp3415K415EK1233EnonsynAaaGaa13813813962-3964
ORF1ab/nsp3415K415NK1233NnonsynaaAaaC134910.6791053962-3964
ORF1ab/nsp3415K415NK1233NnonsynaaAaaT134430.3208963962-3964
ORF1ab/nsp3415K415delK1233deldelAAA---858513962-3964
ORF1ab/nsp3415K415TK1233TnonsynaAaaCa35250.7142863962-3964
ORF1ab/nsp3415K415TK1233TnonsynaAAaCG35100.2857143962-3964
ORF1ab/nsp3415K415del1K1233del1delAaa-aa12100.8333333962-3964
ORF1ab/nsp3415K415del1K1233del1delAaA-aW1210.08333333962-3964
ORF1ab/nsp3415K415del1K1233del1delAAa-Ta1210.08333333962-3964
ORF1ab/nsp3415K415IK1233InonsynaAaaTa101013962-3964
ORF1ab/nsp3415K415XK1233XnonsynAaaTaa3313962-3964
ORF1ab/nsp3415K415del2K1233del2delAAa--a2213962-3964

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF1ab/nsp3415K415KaaAaaG19081908All0.000365
ORF1ab/nsp3415K415KaaAaaG16941694AY.1200.062981
ORF1ab/nsp3415K415RaAaaGa262262All0.00005
ORF1ab/nsp3415K415QAaaCaa150150All0.000029
ORF1ab/nsp3415K415EAaaGaa138138All0.000026
ORF1ab/nsp3415K415NaaAaaC91134All0.000017
ORF1ab/nsp3415K415NaaAaaT43134All0.000008
ORF1ab/nsp3415K415QAaaCaa126126AY.50.002602
ORF1ab/nsp3415K415EAaaGaa9090B.1.20.000792
ORF1ab/nsp3415K415delAAA---8585All0.000016
ORF1ab/nsp3415K415RaAaaGa8181B.1.1.70.000073
ORF1ab/nsp3415K415KaaAaaG6262B.1.20.000546
ORF1ab/nsp3415K415RaAaaGa5959AY.1190.002083
ORF1ab/nsp3415K415KaaAaaG5151B.1.1.70.000046
ORF1ab/nsp3415K415RaAaaGa4646B.1.160.210.938776
ORF1ab/nsp3415K415NaaAaaC3939B.1.10.000707
ORF1ab/nsp3415K415TaAaaCa2535All0.000005
ORF1ab/nsp3415K415TaAAaCG1035All0.000002
ORF1ab/nsp3415K415NaaAaaT2527AY.40.000039
ORF1ab/nsp3415K415NaaAaaC227AY.40.000003
ORF1ab/nsp3415K415RaAaaGa2424B.10.00022
ORF1ab/nsp3415K415KaaAaaG1717B.10.000156
ORF1ab/nsp3415K415TaAaaCa1616B.1.1.5190.000635
ORF1ab/nsp3415K415RaAaaGa1313B.1.3400.055794
ORF1ab/nsp3415K415del1Aaa-aa1012All0.000002
ORF1ab/nsp3415K415del1AAa-Ta112All0
ORF1ab/nsp3415K415del1AaA-aW112All0
ORF1ab/nsp3415K415NaaAaaC1111B.1.1.70.00001
ORF1ab/nsp3415K415IaAaaTa1010All0.000002
ORF1ab/nsp3415K415TaAAaCG1010AY.1200.000372
ORF1ab/nsp3415K415KaaAaaG1010AY.4.20.000217
ORF1ab/nsp3415K415delAAA---1010B.1.1.70.000009
ORF1ab/nsp3415K415EAaaGaa99AY.430.00004
ORF1ab/nsp3415K415EAaaGaa99AY.440.000055
ORF1ab/nsp3415K415NaaAaaC99B.1.5820.004416
ORF1ab/nsp3415K415KaaAaaG88AY.120.20.010283
ORF1ab/nsp3415K415KaaAaaG88B.1.617.20.00003
ORF1ab/nsp3415K415EAaaGaa88B.1.617.20.00003
ORF1ab/nsp3415K415QAaaCaa88B.1.617.20.00003
ORF1ab/nsp3415K415KaaAaaG77AY.40.000011
ORF1ab/nsp3415K415RaAaaGa77B.1.617.20.000026
ORF1ab/nsp3415K415NaaAaaT77C.370.000812
ORF1ab/nsp3415K415IaAaaTa66AY.40.000009
ORF1ab/nsp3415K415delAAA---66AY.40.000009
ORF1ab/nsp3415K415del1Aaa-aa46B.10.000037
ORF1ab/nsp3415K415del1AAa-Ta16B.10.000009
ORF1ab/nsp3415K415del1AaA-aW16B.10.000009
ORF1ab/nsp3415K415RaAaaGa66B.1.20.000053
ORF1ab/nsp3415K415QAaaCaa55AY.1110.000916
ORF1ab/nsp3415K415delAAA---55AY.540.000477
ORF1ab/nsp3415K415RaAaaGa55B.1.10.000091
ORF1ab/nsp3415K415KaaAaaG55B.1.1770.000066
ORF1ab/nsp3415K415NaaAaaC55B.1.177.870.003639
ORF1ab/nsp3415K415NaaAaaC44AY.250.000024
ORF1ab/nsp3415K415delAAA---44AY.30.00004
ORF1ab/nsp3415K415RaAaaGa44AY.40.000006
ORF1ab/nsp3415K415delAAA---44B.1.20.000035
ORF1ab/nsp3415K415delAAA---44B.1.5960.000349
ORF1ab/nsp3415K415EAaaGaa44B.1.617.10.000516
ORF1ab/nsp3415K415delAAA---44P.10.000063
ORF1ab/nsp3415K415XAaaTaa33All0.000001
ORF1ab/nsp3415K415NaaAaaC33AY.10.001187
ORF1ab/nsp3415K415QAaaCaa33AY.1030.000019
ORF1ab/nsp3415K415QAaaCaa33B.1.1.70.000003
ORF1ab/nsp3415K415EAaaGaa33B.1.1.70.000003
ORF1ab/nsp3415K415NaaAaaC33B.1.4360.003086
ORF1ab/nsp3415K415delAAA---33B.1.617.20.000011
ORF1ab/nsp3415K415KaaAaaG33P.10.000047
ORF1ab/nsp3415K415KaaAaaG22A.2.5.20.003145
ORF1ab/nsp3415K415del2AAa--a22All0
ORF1ab/nsp3415K415KaaAaaG22AY.1020.000053
ORF1ab/nsp3415K415KaaAaaG22AY.1140.000462
ORF1ab/nsp3415K415KaaAaaG22AY.1180.000125
ORF1ab/nsp3415K415NaaAaaT22AY.1200.000074
ORF1ab/nsp3415K415RaAaaGa22AY.250.000012
ORF1ab/nsp3415K415delAAA---22AY.4.50.000215
ORF1ab/nsp3415K415delAAA---22AY.430.000009
ORF1ab/nsp3415K415TaAaaCa22AY.440.000012
ORF1ab/nsp3415K415RaAaaGa22AY.480.00093
ORF1ab/nsp3415K415KaaAaaG22AY.50.000041
ORF1ab/nsp3415K415delAAA---22B.10.000018
ORF1ab/nsp3415K415NaaAaaT22B.10.000018
ORF1ab/nsp3415K415delAAA---22B.1.10.000036
ORF1ab/nsp3415K415EAaaGaa22B.1.10.000036
ORF1ab/nsp3415K415IaAaaTa22B.1.1.70.000002
ORF1ab/nsp3415K415RaAaaGa22B.1.1600.000062
ORF1ab/nsp3415K415delAAA---22B.1.1770.000026
ORF1ab/nsp3415K415delAAA---22B.1.177.40.000422
ORF1ab/nsp3415K415NaaAaaT22B.1.20.000018
ORF1ab/nsp3415K415TaAaaCa22B.1.20.000018
ORF1ab/nsp3415K415delAAA---22B.1.258.170.000208
ORF1ab/nsp3415K415RaAaaGa22B.1.4290.000047
ORF1ab/nsp3415K415delAAA---22B.1.5260.000047
ORF1ab/nsp3415K415NaaAaaC22B.1.5550.044444
ORF1ab/nsp3415K415KaaAaaG22B.1.5960.000174
ORF1ab/nsp3415K415delAAA---22B.1.6210.000177
ORF1ab/nsp3415K415del1Aaa-aa22B.1.6270.00404
ORF1ab/nsp3415K415KaaAaaG22C.90.060606
ORF1ab/nsp3415K415delAAA---22P.1.120.000968
ORF1ab/nsp3415K415delAAA---11A0.000387
ORF1ab/nsp3415K415NaaAaaC11A0.000387
ORF1ab/nsp3415K415del1Aaa-aa11A0.000387
ORF1ab/nsp3415K415IaAaaTa11AY.1020.000027
ORF1ab/nsp3415K415NaaAaaC11AY.1020.000027
ORF1ab/nsp3415K415TaAaaCa11AY.1020.000027
ORF1ab/nsp3415K415KaaAaaG11AY.1030.000006
ORF1ab/nsp3415K415RaAaaGa11AY.1030.000006
ORF1ab/nsp3415K415EAaaGaa11AY.1190.000035
ORF1ab/nsp3415K415EAaaGaa11AY.120.10.000321
ORF1ab/nsp3415K415KaaAaaG11AY.200.000039
ORF1ab/nsp3415K415NaaAaaT11AY.220.002092
ORF1ab/nsp3415K415NaaAaaC11AY.230.00007
ORF1ab/nsp3415K415EAaaGaa11AY.250.000006
ORF1ab/nsp3415K415KaaAaaG11AY.260.000028
ORF1ab/nsp3415K415NaaAaaC11AY.290.000016
ORF1ab/nsp3415K415KaaAaaG11AY.30.00001
ORF1ab/nsp3415K415delAAA---11AY.3.10.000085
ORF1ab/nsp3415K415KaaAaaG11AY.300.000396
ORF1ab/nsp3415K415EAaaGaa11AY.330.000067
ORF1ab/nsp3415K415KaaAaaG11AY.330.000067
ORF1ab/nsp3415K415KaaAaaG11AY.360.000148
ORF1ab/nsp3415K415delAAA---11AY.360.000148
ORF1ab/nsp3415K415NaaAaaT11AY.370.000316
ORF1ab/nsp3415K415EAaaGaa11AY.390.000025
ORF1ab/nsp3415K415EAaaGaa11AY.40.000002
ORF1ab/nsp3415K415XAaaTaa11AY.40.000002
ORF1ab/nsp3415K415KaaAaaG11AY.420.00004
ORF1ab/nsp3415K415RaAaaGa11AY.430.000004
ORF1ab/nsp3415K415KaaAaaG11AY.430.000004
ORF1ab/nsp3415K415QAaaCaa11AY.430.000004
ORF1ab/nsp3415K415NaaAaaT11AY.440.000006
ORF1ab/nsp3415K415QAaaCaa11AY.440.000006
ORF1ab/nsp3415K415KaaAaaG11AY.440.000006
ORF1ab/nsp3415K415RaAaaGa11AY.440.000006
ORF1ab/nsp3415K415KaaAaaG11AY.460.000104
ORF1ab/nsp3415K415delAAA---11AY.46.20.000635
ORF1ab/nsp3415K415RaAaaGa11AY.470.000031
ORF1ab/nsp3415K415EAaaGaa11AY.50.000021
ORF1ab/nsp3415K415QAaaCaa11AY.5.40.000277
ORF1ab/nsp3415K415EAaaGaa11AY.500.000799
ORF1ab/nsp3415K415KaaAaaG11AY.70.000196
ORF1ab/nsp3415K415KaaAaaG11AY.750.000056
ORF1ab/nsp3415K415delAAA---11AY.75.10.00018
ORF1ab/nsp3415K415NaaAaaC11AY.80.000606
ORF1ab/nsp3415K415EAaaGaa11AY.90.000068
ORF1ab/nsp3415K415KaaAaaG11AY.9.20.000037
ORF1ab/nsp3415K415EAaaGaa11AY.9.20.000037
ORF1ab/nsp3415K415KaaAaaG11AY.980.000079
ORF1ab/nsp3415K415TaAaaCa11B.1.10.000018
ORF1ab/nsp3415K415del1Aaa-aa11B.1.10.000018
ORF1ab/nsp3415K415delAAA---11B.1.1.10.000327
ORF1ab/nsp3415K415delAAA---11B.1.1.1920.002309
ORF1ab/nsp3415K415KaaAaaG11B.1.1.2160.00089
ORF1ab/nsp3415K415delAAA---11B.1.1.2220.000204
ORF1ab/nsp3415K415QAaaCaa11B.1.1.2440.015385
ORF1ab/nsp3415K415delAAA---11B.1.1.3010.001179
ORF1ab/nsp3415K415delAAA---11B.1.1.3160.000925
ORF1ab/nsp3415K415delAAA---11B.1.1.330.000421
ORF1ab/nsp3415K415delAAA---11B.1.1.3370.003597
ORF1ab/nsp3415K415KaaAaaG11B.1.1.3710.010417
ORF1ab/nsp3415K415EAaaGaa11B.1.1.390.00051
ORF1ab/nsp3415K415delAAA---11B.1.1.5190.00004
ORF1ab/nsp3415K415del2AAa--a11B.1.1.70.000001
ORF1ab/nsp3415K415TaAaaCa11B.1.1.70.000001
ORF1ab/nsp3415K415XAaaTaa11B.1.1280.000635
ORF1ab/nsp3415K415NaaAaaC11B.1.1600.000031
ORF1ab/nsp3415K415KaaAaaG11B.1.160.120.00641
ORF1ab/nsp3415K415EAaaGaa11B.1.160.260.002421
ORF1ab/nsp3415K415NaaAaaC11B.1.1770.000013
ORF1ab/nsp3415K415RaAaaGa11B.1.177.100.000878
ORF1ab/nsp3415K415delAAA---11B.1.177.160.000664
ORF1ab/nsp3415K415NaaAaaC11B.1.177.810.000189
ORF1ab/nsp3415K415QAaaCaa11B.1.20.000009
ORF1ab/nsp3415K415del1Aaa-aa11B.1.20.000009
ORF1ab/nsp3415K415del2AAa--a11B.1.20.000009
ORF1ab/nsp3415K415RaAaaGa11B.1.2210.000071
ORF1ab/nsp3415K415delAAA---11B.1.2210.000071
ORF1ab/nsp3415K415KaaAaaG11B.1.2210.000071
ORF1ab/nsp3415K415TaAaaCa11B.1.2210.000071
ORF1ab/nsp3415K415EAaaGaa11B.1.2430.00007
ORF1ab/nsp3415K415NaaAaaC11B.1.2430.00007
ORF1ab/nsp3415K415NaaAaaC11B.1.2580.000067
ORF1ab/nsp3415K415KaaAaaG11B.1.3240.001605
ORF1ab/nsp3415K415KaaAaaG11B.1.3510.00003
ORF1ab/nsp3415K415TaAaaCa11B.1.360.000146
ORF1ab/nsp3415K415delAAA---11B.1.360.000146
ORF1ab/nsp3415K415delAAA---11B.1.36.160.001425
ORF1ab/nsp3415K415NaaAaaC11B.1.3670.000792
ORF1ab/nsp3415K415delAAA---11B.1.4270.00005
ORF1ab/nsp3415K415delAAA---11B.1.4290.000024
ORF1ab/nsp3415K415KaaAaaG11B.1.4620.007246
ORF1ab/nsp3415K415NaaAaaC11B.1.466.20.000391
ORF1ab/nsp3415K415KaaAaaG11B.1.5250.000113
ORF1ab/nsp3415K415RaAaaGa11B.1.5260.000024
ORF1ab/nsp3415K415KaaAaaG11B.1.5610.000397
ORF1ab/nsp3415K415delAAA---11B.1.5950.000261
ORF1ab/nsp3415K415NaaAaaT11B.1.617.20.000004
ORF1ab/nsp3415K415del1Aaa-aa11B.1.617.20.000004
ORF1ab/nsp3415K415NaaAaaC11B.1.6230.000536
ORF1ab/nsp3415K415KaaAaaG11B.1.6250.002353
ORF1ab/nsp3415K415KaaAaaG11B.1.940.027027
ORF1ab/nsp3415K415delAAA---11B.570.015152
ORF1ab/nsp3415K415KaaAaaG11B.610.005747
ORF1ab/nsp3415K415KaaAaaG11D.20.000075
ORF1ab/nsp3415K415KaaAaaG11N.50.001767
ORF1ab/nsp3415K415RaAaaGa11N.50.001767
ORF1ab/nsp3415K415delAAA---11N.60.007092
ORF1ab/nsp3415K415XAaaTaa11P.10.000016
ORF1ab/nsp3415K415IaAaaTa11P.10.000016
ORF1ab/nsp3415K415NaaAaaT11P.1.10.000318
ORF1ab/nsp3415K415delAAA---11P.1.140.000048
ORF1ab/nsp3415K415RaAaaGa11Q.70.001111
ORF1ab/nsp3415K415delAAA---11R.10.00009
ORF1ab/nsp3415K415delAAA---11U.30.003861