CoV-GLUEGenomeCountriesLineagesMutationsInsertionsDeletionsUpdated:

CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF1ab/nsp3 : CodonNum = 414 & Codon = atT

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF1ab/nsp3414I414II1232IsynatCatT1002896830.9655963959-3961

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF1ab/nsp3414I414IatCatT968310028All0.001852
ORF1ab/nsp3414I414IatCatT32703270B.1.1.3180.986723
ORF1ab/nsp3414I414IatCatT12151215AZ.20.997537
ORF1ab/nsp3414I414IatCatT11501150AZ.10.997398
ORF1ab/nsp3414I414IatCatT982990AY.40.001528
ORF1ab/nsp3414I414IatCatT657657AZ.30.99848
ORF1ab/nsp3414I414IatCatT215335B.1.1.70.000192
ORF1ab/nsp3414I414IatCatT297297AZ.40.996644
ORF1ab/nsp3414I414IatCatT285285AZ.51
ORF1ab/nsp3414I414IatCatT185219B.1.617.20.000697
ORF1ab/nsp3414I414IatCatT124124AY.1200.00461
ORF1ab/nsp3414I414IatCatT121121AZ.2.10.98374
ORF1ab/nsp3414I414IatCatT119119AZ.61
ORF1ab/nsp3414I414IatCatT114114B.1.3510.003389
ORF1ab/nsp3414I414IatCatT9494B.1.1.250.053439
ORF1ab/nsp3414I414IatCatT5970AY.430.000261
ORF1ab/nsp3414I414IatCatT667AY.470.000187
ORF1ab/nsp3414I414IatCatT4164AY.440.00025
ORF1ab/nsp3414I414IatCatT5254AY.30.000517
ORF1ab/nsp3414I414IatCatT4145AY.250.000247
ORF1ab/nsp3414I414IatCatT3744P.10.000583
ORF1ab/nsp3414I414IatCatT3040B.10.000275
ORF1ab/nsp3414I414IatCatT3233B.1.1.5190.001271
ORF1ab/nsp3414I414IatCatT3333B.1.5960.002876
ORF1ab/nsp3414I414IatCatT2929AY.800.032731
ORF1ab/nsp3414I414IatCatT2929B.1.2400.006251
ORF1ab/nsp3414I414IatCatT2626AY.260.000736
ORF1ab/nsp3414I414IatCatT2325B.1.10.000417
ORF1ab/nsp3414I414IatCatT1923AY.1030.000118
ORF1ab/nsp3414I414IatCatT2323P.1.140.001099
ORF1ab/nsp3414I414IatCatT1919B.1.1600.000593
ORF1ab/nsp3414I414IatCatT1818B.1.177.600.003932
ORF1ab/nsp3414I414IatCatT1414B.1.4290.000329
ORF1ab/nsp3414I414IatCatT1313B.1.1.2530.032581
ORF1ab/nsp3414I414IatCatT1313B.1.1770.000171
ORF1ab/nsp3414I414IatCatT1113B.1.20.000097
ORF1ab/nsp3414I414IatCatT910B.1.4270.000454
ORF1ab/nsp3414I414IatCatT1010C.10.023923
ORF1ab/nsp3414I414IatCatT99B.1.5260.000212
ORF1ab/nsp3414I414IatCatT88AY.4.2.10.001192
ORF1ab/nsp3414I414IatCatT68B.1.2340.000792
ORF1ab/nsp3414I414IatCatT88B.1.6141
ORF1ab/nsp3414I414IatCatT77AT.10.035897
ORF1ab/nsp3414I414IatCatT57AY.1000.00023
ORF1ab/nsp3414I414IatCatT57AY.4.20.000108
ORF1ab/nsp3414I414IatCatT27AY.450.000243
ORF1ab/nsp3414I414IatCatT77B.1.6370.000512
ORF1ab/nsp3414I414IatCatT77C.36.30.003971
ORF1ab/nsp3414I414IatCatT66AY.39.10.000238
ORF1ab/nsp3414I414IatCatT66AY.4.50.000645
ORF1ab/nsp3414I414IatCatT66AY.750.000336
ORF1ab/nsp3414I414IatCatT66B.1.2580.000399
ORF1ab/nsp3414I414IatCatT66B.1.5250.000679
ORF1ab/nsp3414I414IatCatT55AY.1190.000177
ORF1ab/nsp3414I414IatCatT55AY.700.001043
ORF1ab/nsp3414I414IatCatT35AY.9.20.00011
ORF1ab/nsp3414I414IatCatT55AY.980.000395
ORF1ab/nsp3414I414IatCatT55AY.98.10.000242
ORF1ab/nsp3414I414IatCatT55B.1.1.370.000964
ORF1ab/nsp3414I414IatCatT55B.1.4970.001574
ORF1ab/nsp3414I414IatCatT34AY.1170.000254
ORF1ab/nsp3414I414IatCatT44AY.420.000161
ORF1ab/nsp3414I414IatCatT44AY.50.000083
ORF1ab/nsp3414I414IatCatT34B0.000383
ORF1ab/nsp3414I414IatCatT44B.1.1.330.001684
ORF1ab/nsp3414I414IatCatT44B.1.2430.000278
ORF1ab/nsp3414I414IatCatT44B.1.5610.001588
ORF1ab/nsp3414I414IatCatT44B.1.617.10.000516
ORF1ab/nsp3414I414IatCatT33AY.230.000209
ORF1ab/nsp3414I414IatCatT33AY.540.000286
ORF1ab/nsp3414I414IatCatT33AY.60.000123
ORF1ab/nsp3414I414IatCatT33AY.720.004082
ORF1ab/nsp3414I414IatCatT33AY.90.000203
ORF1ab/nsp3414I414IatCatT33B.1.1.1330.025424
ORF1ab/nsp3414I414IatCatT33B.1.5760.00272
ORF1ab/nsp3414I414IatCatT33C.140.012987
ORF1ab/nsp3414I414IatCatT33C.370.000348
ORF1ab/nsp3414I414IatCatT33Q.80.000495
ORF1ab/nsp3414I414IatCatT22AY.1020.000053
ORF1ab/nsp3414I414IatCatT22AY.1180.000125
ORF1ab/nsp3414I414IatCatT12AY.290.000016
ORF1ab/nsp3414I414IatCatT22AY.390.000049
ORF1ab/nsp3414I414IatCatT22AY.46.10.002053
ORF1ab/nsp3414I414IatCatT22AY.46.40.000329
ORF1ab/nsp3414I414IatCatT22AY.75.10.000361
ORF1ab/nsp3414I414IatCatT22AY.840.000875
ORF1ab/nsp3414I414IatCatT22AY.900.001369
ORF1ab/nsp3414I414IatCatT12B.1.1.2220.000204
ORF1ab/nsp3414I414IatCatT22B.1.1.280.000622
ORF1ab/nsp3414I414IatCatT22B.1.2100.004264
ORF1ab/nsp3414I414IatCatT22B.1.258.140.001961
ORF1ab/nsp3414I414IatCatT22B.1.6210.000177
ORF1ab/nsp3414I414IatCatT22D.20.00015
ORF1ab/nsp3414I414IatCatT12P.20.000187
ORF1ab/nsp3414I414IatCatT22R.10.00018
ORF1ab/nsp3414I414IatCatT11A.20.000662
ORF1ab/nsp3414I414IatCatT11A.2.50.000499
ORF1ab/nsp3414I414IatCatT11AY.1010.00049
ORF1ab/nsp3414I414IatCatT11AY.1050.000643
ORF1ab/nsp3414I414IatCatT11AY.1160.000287
ORF1ab/nsp3414I414IatCatT11AY.120.000316
ORF1ab/nsp3414I414IatCatT11AY.160.00038
ORF1ab/nsp3414I414IatCatT11AY.200.000039
ORF1ab/nsp3414I414IatCatT11AY.360.000148
ORF1ab/nsp3414I414IatCatT11AY.46.60.000072
ORF1ab/nsp3414I414IatCatT11AY.620.000436
ORF1ab/nsp3414I414IatCatT11B.1.1.10.000327
ORF1ab/nsp3414I414IatCatT11B.1.1.1420.017544
ORF1ab/nsp3414I414IatCatT11B.1.1.1580.012195
ORF1ab/nsp3414I414IatCatT11B.1.1.2850.006536
ORF1ab/nsp3414I414IatCatT11B.1.1.2910.000742
ORF1ab/nsp3414I414IatCatT11B.1.1.2940.001266
ORF1ab/nsp3414I414IatCatT11B.1.1.3170.000412
ORF1ab/nsp3414I414IatCatT11B.1.1.3260.001761
ORF1ab/nsp3414I414IatCatT11B.1.1.3290.003846
ORF1ab/nsp3414I414IatCatT11B.1.1.3480.000796
ORF1ab/nsp3414I414IatCatT11B.1.1.4090.002833
ORF1ab/nsp3414I414IatCatT11B.1.1.4190.007407
ORF1ab/nsp3414I414IatCatT11B.1.1.80.003584
ORF1ab/nsp3414I414IatCatT11B.1.110.30.000718
ORF1ab/nsp3414I414IatCatT11B.1.160.140.002119
ORF1ab/nsp3414I414IatCatT11B.1.1700.00431
ORF1ab/nsp3414I414IatCatT11B.1.177.20.004545
ORF1ab/nsp3414I414IatCatT11B.1.177.210.000076
ORF1ab/nsp3414I414IatCatT11B.1.177.70.000165
ORF1ab/nsp3414I414IatCatT11B.1.2210.000071
ORF1ab/nsp3414I414IatCatT11B.1.3490.000715
ORF1ab/nsp3414I414IatCatT11B.1.362.20.004717
ORF1ab/nsp3414I414IatCatT11B.1.3670.000792
ORF1ab/nsp3414I414IatCatT11B.1.3690.000285
ORF1ab/nsp3414I414IatCatT11B.1.3750.00082
ORF1ab/nsp3414I414IatCatT11B.1.466.20.000391
ORF1ab/nsp3414I414IatCatT11B.1.5030.002488
ORF1ab/nsp3414I414IatCatT11B.1.5380.008065
ORF1ab/nsp3414I414IatCatT11B.1.5460.003704
ORF1ab/nsp3414I414IatCatT11B.1.5510.00129
ORF1ab/nsp3414I414IatCatT11B.1.564.10.001577
ORF1ab/nsp3414I414IatCatT11B.1.5690.014493
ORF1ab/nsp3414I414IatCatT11B.400.000364
ORF1ab/nsp3414I414IatCatT11B.60.00091
ORF1ab/nsp3414I414IatCatT11C.260.007353
ORF1ab/nsp3414I414IatCatT11P.1.120.000484
ORF1ab/nsp3414I414IatCatT11P.1.170.000162
ORF1ab/nsp3414I414IatCatT11P.1.70.000319
ORF1ab/nsp3414I414IatCatT11Q.30.000145

CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk

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