CoV-GLUE | Mutations | Mutation
Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):
ORF | CodonNum | Mut | ORF1abMut | MutType | RefCodon | MutCodon | AACount | CodonCount | CodonProp | Genome Position |
ORF1ab/nsp3 | 410 | D410G | D1228G | nonsyn | gAt | gGt | 70817 | 70817 | 1 | 3947-3949 |
Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):
ORF | CodonNum | Mut | RefCodon | MutCodon | CodonCount | AACount | Lineage | LineageCodonProp |
ORF1ab/nsp3 | 410 | D410G | gAt | gGt | 70817 | 70817 | All | 0.013545 |
ORF1ab/nsp3 | 410 | D410G | gAt | gGt | 68896 | 68896 | AY.25 | 0.414397 |
ORF1ab/nsp3 | 410 | D410G | gAt | gGt | 440 | 440 | B.1.1.7 | 0.000394 |
ORF1ab/nsp3 | 410 | D410G | gAt | gGt | 385 | 385 | B.1.617.2 | 0.00145 |
ORF1ab/nsp3 | 410 | D410G | gAt | gGt | 149 | 149 | AY.113 | 0.021216 |
ORF1ab/nsp3 | 410 | D410G | gAt | gGt | 148 | 148 | AY.39 | 0.003657 |
ORF1ab/nsp3 | 410 | D410G | gAt | gGt | 85 | 85 | AY.44 | 0.000517 |
ORF1ab/nsp3 | 410 | D410G | gAt | gGt | 78 | 78 | AY.120 | 0.0029 |
ORF1ab/nsp3 | 410 | D410G | gAt | gGt | 71 | 71 | AY.4 | 0.000111 |
ORF1ab/nsp3 | 410 | D410G | gAt | gGt | 51 | 51 | AY.117 | 0.00431 |
ORF1ab/nsp3 | 410 | D410G | gAt | gGt | 43 | 43 | AY.43 | 0.000191 |
ORF1ab/nsp3 | 410 | D410G | gAt | gGt | 34 | 34 | AY.103 | 0.000211 |
ORF1ab/nsp3 | 410 | D410G | gAt | gGt | 33 | 33 | AY.26 | 0.000934 |
ORF1ab/nsp3 | 410 | D410G | gAt | gGt | 33 | 33 | AY.47 | 0.001026 |
ORF1ab/nsp3 | 410 | D410G | gAt | gGt | 31 | 31 | AY.92 | 0.008905 |
ORF1ab/nsp3 | 410 | D410G | gAt | gGt | 30 | 30 | B | 0.003834 |
ORF1ab/nsp3 | 410 | D410G | gAt | gGt | 24 | 24 | AY.119 | 0.000847 |
ORF1ab/nsp3 | 410 | D410G | gAt | gGt | 22 | 22 | AY.23 | 0.001534 |
ORF1ab/nsp3 | 410 | D410G | gAt | gGt | 20 | 20 | AY.3 | 0.000199 |
ORF1ab/nsp3 | 410 | D410G | gAt | gGt | 16 | 16 | AY.46 | 0.001665 |
ORF1ab/nsp3 | 410 | D410G | gAt | gGt | 14 | 14 | AY.46.6 | 0.001011 |
ORF1ab/nsp3 | 410 | D410G | gAt | gGt | 13 | 13 | B.1 | 0.000119 |
ORF1ab/nsp3 | 410 | D410G | gAt | gGt | 13 | 13 | B.1.1.28 | 0.004046 |
ORF1ab/nsp3 | 410 | D410G | gAt | gGt | 10 | 10 | AY.102 | 0.000265 |
ORF1ab/nsp3 | 410 | D410G | gAt | gGt | 9 | 9 | AY.45 | 0.001095 |
ORF1ab/nsp3 | 410 | D410G | gAt | gGt | 9 | 9 | AY.75 | 0.000504 |
ORF1ab/nsp3 | 410 | D410G | gAt | gGt | 9 | 9 | AY.98 | 0.000711 |
ORF1ab/nsp3 | 410 | D410G | gAt | gGt | 8 | 8 | AY.46.4 | 0.001316 |
ORF1ab/nsp3 | 410 | D410G | gAt | gGt | 7 | 7 | AY.5 | 0.000145 |
ORF1ab/nsp3 | 410 | D410G | gAt | gGt | 6 | 6 | AY.20 | 0.000233 |
ORF1ab/nsp3 | 410 | D410G | gAt | gGt | 6 | 6 | P.1 | 0.000095 |
ORF1ab/nsp3 | 410 | D410G | gAt | gGt | 5 | 5 | AY.109 | 0.003698 |
ORF1ab/nsp3 | 410 | D410G | gAt | gGt | 5 | 5 | AY.82 | 0.006784 |
ORF1ab/nsp3 | 410 | D410G | gAt | gGt | 5 | 5 | B.1.177 | 0.000066 |
ORF1ab/nsp3 | 410 | D410G | gAt | gGt | 4 | 4 | AY.101 | 0.001962 |
ORF1ab/nsp3 | 410 | D410G | gAt | gGt | 4 | 4 | AY.108 | 0.00441 |
ORF1ab/nsp3 | 410 | D410G | gAt | gGt | 4 | 4 | AY.9.2 | 0.000147 |
ORF1ab/nsp3 | 410 | D410G | gAt | gGt | 4 | 4 | B.1.1.153 | 0.004381 |
ORF1ab/nsp3 | 410 | D410G | gAt | gGt | 3 | 3 | AY.12 | 0.000948 |
ORF1ab/nsp3 | 410 | D410G | gAt | gGt | 3 | 3 | AY.34.1 | 0.00153 |
ORF1ab/nsp3 | 410 | D410G | gAt | gGt | 3 | 3 | AY.46.1 | 0.00308 |
ORF1ab/nsp3 | 410 | D410G | gAt | gGt | 3 | 3 | AY.61 | 0.000314 |
ORF1ab/nsp3 | 410 | D410G | gAt | gGt | 3 | 3 | AY.62 | 0.001307 |
ORF1ab/nsp3 | 410 | D410G | gAt | gGt | 3 | 3 | AY.99.2 | 0.000276 |
ORF1ab/nsp3 | 410 | D410G | gAt | gGt | 2 | 2 | AU.3 | 0.004219 |
ORF1ab/nsp3 | 410 | D410G | gAt | gGt | 2 | 2 | AY.114 | 0.000462 |
ORF1ab/nsp3 | 410 | D410G | gAt | gGt | 2 | 2 | AY.118 | 0.000125 |
ORF1ab/nsp3 | 410 | D410G | gAt | gGt | 2 | 2 | AY.14 | 0.000176 |
ORF1ab/nsp3 | 410 | D410G | gAt | gGt | 2 | 2 | AY.17 | 0.016393 |
ORF1ab/nsp3 | 410 | D410G | gAt | gGt | 2 | 2 | AY.27 | 0.000129 |
ORF1ab/nsp3 | 410 | D410G | gAt | gGt | 2 | 2 | AY.33 | 0.000134 |
ORF1ab/nsp3 | 410 | D410G | gAt | gGt | 2 | 2 | AY.5.3 | 0.000675 |
ORF1ab/nsp3 | 410 | D410G | gAt | gGt | 2 | 2 | AY.54 | 0.000191 |
ORF1ab/nsp3 | 410 | D410G | gAt | gGt | 2 | 2 | AY.58 | 0.001815 |
ORF1ab/nsp3 | 410 | D410G | gAt | gGt | 2 | 2 | AY.67 | 0.000929 |
ORF1ab/nsp3 | 410 | D410G | gAt | gGt | 2 | 2 | AY.75.1 | 0.000361 |
ORF1ab/nsp3 | 410 | D410G | gAt | gGt | 2 | 2 | AY.77 | 0.002255 |
ORF1ab/nsp3 | 410 | D410G | gAt | gGt | 2 | 2 | AY.9.1 | 0.000167 |
ORF1ab/nsp3 | 410 | D410G | gAt | gGt | 2 | 2 | AY.95 | 0.001522 |
ORF1ab/nsp3 | 410 | D410G | gAt | gGt | 2 | 2 | AY.99 | 0.002099 |
ORF1ab/nsp3 | 410 | D410G | gAt | gGt | 2 | 2 | B.1.1.214 | 0.000111 |
ORF1ab/nsp3 | 410 | D410G | gAt | gGt | 2 | 2 | B.1.36 | 0.000292 |
ORF1ab/nsp3 | 410 | D410G | gAt | gGt | 2 | 2 | B.1.36.8 | 0.002 |
ORF1ab/nsp3 | 410 | D410G | gAt | gGt | 2 | 2 | P.1.14 | 0.000096 |
ORF1ab/nsp3 | 410 | D410G | gAt | gGt | 1 | 1 | A.2.5.3 | 0.010309 |
ORF1ab/nsp3 | 410 | D410G | gAt | gGt | 1 | 1 | AY.116.1 | 0.000311 |
ORF1ab/nsp3 | 410 | D410G | gAt | gGt | 1 | 1 | AY.13 | 0.000161 |
ORF1ab/nsp3 | 410 | D410G | gAt | gGt | 1 | 1 | AY.29 | 0.000016 |
ORF1ab/nsp3 | 410 | D410G | gAt | gGt | 1 | 1 | AY.30 | 0.000396 |
ORF1ab/nsp3 | 410 | D410G | gAt | gGt | 1 | 1 | AY.32 | 0.000532 |
ORF1ab/nsp3 | 410 | D410G | gAt | gGt | 1 | 1 | AY.4.4 | 0.000409 |
ORF1ab/nsp3 | 410 | D410G | gAt | gGt | 1 | 1 | AY.4.5 | 0.000107 |
ORF1ab/nsp3 | 410 | D410G | gAt | gGt | 1 | 1 | AY.41 | 0.000294 |
ORF1ab/nsp3 | 410 | D410G | gAt | gGt | 1 | 1 | AY.46.2 | 0.000635 |
ORF1ab/nsp3 | 410 | D410G | gAt | gGt | 1 | 1 | AY.52 | 0.000814 |
ORF1ab/nsp3 | 410 | D410G | gAt | gGt | 1 | 1 | AY.6 | 0.000041 |
ORF1ab/nsp3 | 410 | D410G | gAt | gGt | 1 | 1 | AY.7.1 | 0.000113 |
ORF1ab/nsp3 | 410 | D410G | gAt | gGt | 1 | 1 | AY.91 | 0.00073 |
ORF1ab/nsp3 | 410 | D410G | gAt | gGt | 1 | 1 | AY.93 | 0.000273 |
ORF1ab/nsp3 | 410 | D410G | gAt | gGt | 1 | 1 | AY.96 | 0.002075 |
ORF1ab/nsp3 | 410 | D410G | gAt | gGt | 1 | 1 | AY.98.1 | 0.000048 |
ORF1ab/nsp3 | 410 | D410G | gAt | gGt | 1 | 1 | B.1.1.128 | 0.007092 |
ORF1ab/nsp3 | 410 | D410G | gAt | gGt | 1 | 1 | B.1.1.141 | 0.002012 |
ORF1ab/nsp3 | 410 | D410G | gAt | gGt | 1 | 1 | B.1.1.170 | 0.001247 |
ORF1ab/nsp3 | 410 | D410G | gAt | gGt | 1 | 1 | B.1.1.434 | 0.000349 |
ORF1ab/nsp3 | 410 | D410G | gAt | gGt | 1 | 1 | B.1.2 | 0.000009 |
ORF1ab/nsp3 | 410 | D410G | gAt | gGt | 1 | 1 | B.1.258 | 0.000067 |
ORF1ab/nsp3 | 410 | D410G | gAt | gGt | 1 | 1 | B.1.335 | 0.010309 |
ORF1ab/nsp3 | 410 | D410G | gAt | gGt | 1 | 1 | B.1.351 | 0.00003 |
ORF1ab/nsp3 | 410 | D410G | gAt | gGt | 1 | 1 | B.1.398 | 0.002976 |
ORF1ab/nsp3 | 410 | D410G | gAt | gGt | 1 | 1 | B.1.497 | 0.000315 |
ORF1ab/nsp3 | 410 | D410G | gAt | gGt | 1 | 1 | B.1.621 | 0.000089 |
ORF1ab/nsp3 | 410 | D410G | gAt | gGt | 1 | 1 | B.37 | 0.028571 |
ORF1ab/nsp3 | 410 | D410G | gAt | gGt | 1 | 1 | P.1.1 | 0.000318 |
ORF1ab/nsp3 | 410 | D410G | gAt | gGt | 1 | 1 | P.1.12 | 0.000484 |
ORF1ab/nsp3 | 410 | D410G | gAt | gGt | 1 | 1 | P.1.16 | 0.000374 |
ORF1ab/nsp3 | 410 | D410G | gAt | gGt | 1 | 1 | P.1.7 | 0.000319 |
ORF1ab/nsp3 | 410 | D410G | gAt | gGt | 1 | 1 | Q.1 | 0.000126 |
ORF1ab/nsp3 | 410 | D410G | gAt | gGt | 1 | 1 | Q.8 | 0.000165 |
CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk
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