CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF1ab/nsp3 : CodonNum = 41

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF1ab/nsp341A41VA859VnonsyngCcgTc881188040.9992062840-2842
ORF1ab/nsp341A41VA859VnonsyngCCgTT881170.0007944612840-2842
ORF1ab/nsp341A41AA859AsyngcCgcT867183780.9662092840-2842
ORF1ab/nsp341A41AA859AsyngcCgcA86712850.03286822840-2842
ORF1ab/nsp341A41AA859AsyngcCgcG867180.0009226162840-2842
ORF1ab/nsp341A41TA859TnonsynGccAcc3563550.9971912840-2842
ORF1ab/nsp341A41TA859TnonsynGcCAcA35610.002808992840-2842
ORF1ab/nsp341A41SA859SnonsynGccTcc65610.9384622840-2842
ORF1ab/nsp341A41SA859SnonsynGcCTcA6530.04615382840-2842
ORF1ab/nsp341A41SA859SnonsynGcCTcT6510.01538462840-2842
ORF1ab/nsp341A41DA859DnonsyngCcgAc424212840-2842
ORF1ab/nsp341A41delA859deldelGCC---363612840-2842
ORF1ab/nsp341A41GA859GnonsyngCcgGc32290.906252840-2842
ORF1ab/nsp341A41GA859GnonsyngCCgGA3220.06252840-2842
ORF1ab/nsp341A41GA859GnonsyngCCgGT3210.031252840-2842
ORF1ab/nsp341A41CA859CnonsynGCcTGc540.82840-2842
ORF1ab/nsp341A41PA859PnonsynGccCcc540.82840-2842
ORF1ab/nsp341A41CA859CnonsynGCCTGT510.22840-2842
ORF1ab/nsp341A41PA859PnonsynGcCCcT510.22840-2842
ORF1ab/nsp341A41EA859EnonsyngCCgAA4412840-2842
ORF1ab/nsp341A41YA859YnonsynGCcTAc4412840-2842
ORF1ab/nsp341A41IA859InonsynGCCATT420.52840-2842
ORF1ab/nsp341A41XA859XnonsynGCCTGA420.52840-2842
ORF1ab/nsp341A41XA859XnonsynGCCTAA420.52840-2842
ORF1ab/nsp341A41IA859InonsynGCcATc420.52840-2842
ORF1ab/nsp341A41del1A859del1delgCcg-c320.6666672840-2842
ORF1ab/nsp341A41del1A859del1delGCc-Ac310.3333332840-2842
ORF1ab/nsp341A41KA859KnonsynGCCAAA1112840-2842
ORF1ab/nsp341A41NA859NnonsynGCcAAc1112840-2842

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF1ab/nsp341A41VgCcgTc88048811All0.001684
ORF1ab/nsp341A41VgCCgTT78811All0.000001
ORF1ab/nsp341A41AgcCgcT83788671All0.001602
ORF1ab/nsp341A41AgcCgcA2858671All0.000055
ORF1ab/nsp341A41AgcCgcG88671All0.000002
ORF1ab/nsp341A41AgcCgcT42954322B.1.1.70.003845
ORF1ab/nsp341A41AgcCgcA264322B.1.1.70.000023
ORF1ab/nsp341A41AgcCgcG14322B.1.1.70.000001
ORF1ab/nsp341A41VgCcgTc26142614B.1.1.70.00234
ORF1ab/nsp341A41VgCcgTc16751680C.36.30.950085
ORF1ab/nsp341A41VgCCgTT51680C.36.30.002836
ORF1ab/nsp341A41VgCcgTc16721672P.1.100.450552
ORF1ab/nsp341A41AgcCgcT13061317AY.40.002033
ORF1ab/nsp341A41AgcCgcA111317AY.40.000017
ORF1ab/nsp341A41VgCcgTc560560C.360.510018
ORF1ab/nsp341A41AgcCgcT380381B.1.20.003346
ORF1ab/nsp341A41AgcCgcG1381B.1.20.000009
ORF1ab/nsp341A41VgCcgTc360360AY.290.005679
ORF1ab/nsp341A41TGccAcc355356All0.000068
ORF1ab/nsp341A41TGcCAcA1356All0
ORF1ab/nsp341A41AgcCgcT329340AY.430.001458
ORF1ab/nsp341A41AgcCgcA11340AY.430.000049
ORF1ab/nsp341A41VgCcgTc306306C.36.3.10.831522
ORF1ab/nsp341A41AgcCgcT123219B.1.617.20.000463
ORF1ab/nsp341A41AgcCgcA96219B.1.617.20.000361
ORF1ab/nsp341A41VgCcgTc189189AY.40.000294
ORF1ab/nsp341A41AgcCgcT179180B.1.4290.004212
ORF1ab/nsp341A41AgcCgcA1180B.1.4290.000024
ORF1ab/nsp341A41AgcCgcT164164AY.1130.023352
ORF1ab/nsp341A41AgcCgcT148158AY.440.000901
ORF1ab/nsp341A41AgcCgcA10158AY.440.000061
ORF1ab/nsp341A41TGccAcc128128AY.250.00077
ORF1ab/nsp341A41VgCcgTc127127B.1.617.20.000478
ORF1ab/nsp341A41AgcCgcT110113B.1.1770.001448
ORF1ab/nsp341A41AgcCgcG3113B.1.1770.00004
ORF1ab/nsp341A41AgcCgcT98101AY.250.000589
ORF1ab/nsp341A41AgcCgcA3101AY.250.000018
ORF1ab/nsp341A41VgCcgTc8181P.1.10.10.658537
ORF1ab/nsp341A41AgcCgcA7878AY.16.10.036654
ORF1ab/nsp341A41VgCcgTc7575AY.470.002333
ORF1ab/nsp341A41AgcCgcT7171AY.50.001466
ORF1ab/nsp341A41AgcCgcT7071P.10.001103
ORF1ab/nsp341A41AgcCgcG171P.10.000016
ORF1ab/nsp341A41AgcCgcT5867B.10.000531
ORF1ab/nsp341A41AgcCgcA967B.10.000082
ORF1ab/nsp341A41VgCcgTc6666P.10.00104
ORF1ab/nsp341A41SGccTcc6165All0.000012
ORF1ab/nsp341A41SGcCTcA365All0.000001
ORF1ab/nsp341A41SGcCTcT165All0
ORF1ab/nsp341A41TGccAcc6565AY.4.2.10.009684
ORF1ab/nsp341A41AgcCgcT6263AY.1190.002189
ORF1ab/nsp341A41AgcCgcA163AY.1190.000035
ORF1ab/nsp341A41VgCcgTc5959AY.30.000587
ORF1ab/nsp341A41VgCcgTc5151B.1.20.000449
ORF1ab/nsp341A41VgCcgTc4949AY.390.001211
ORF1ab/nsp341A41VgCcgTc4747AY.1020.001246
ORF1ab/nsp341A41VgCcgTc4747AY.130.007566
ORF1ab/nsp341A41VgCcgTc4545B.1.2430.003131
ORF1ab/nsp341A41AgcCgcT4545B.1.4270.002272
ORF1ab/nsp341A41AgcCgcT4444B.1.177.810.00833
ORF1ab/nsp341A41VgCcgTc4343B.1.1.3330.046286
ORF1ab/nsp341A41DgCcgAc4242All0.000008
ORF1ab/nsp341A41VgCcgTc4242AY.250.000253
ORF1ab/nsp341A41AgcCgcT4041AY.1030.000248
ORF1ab/nsp341A41AgcCgcA141AY.1030.000006
ORF1ab/nsp341A41AgcCgcT3737AY.930.010104
ORF1ab/nsp341A41VgCcgTc3737B.10.000339
ORF1ab/nsp341A41TGccAcc3737B.1.1.5190.001469
ORF1ab/nsp341A41delGCC---3636All0.000007
ORF1ab/nsp341A41AgcCgcT3434B.1.4000.014586
ORF1ab/nsp341A41GgCcgGc2932All0.000006
ORF1ab/nsp341A41GgCCgGA232All0
ORF1ab/nsp341A41GgCCgGT132All0
ORF1ab/nsp341A41TGccAcc3131AY.1200.001153
ORF1ab/nsp341A41AgcCgcT2930B.1.3510.000862
ORF1ab/nsp341A41AgcCgcA130B.1.3510.00003
ORF1ab/nsp341A41VgCcgTc2929B.1.10.000526
ORF1ab/nsp341A41VgCcgTc2929B.1.160.250.322222
ORF1ab/nsp341A41VgCcgTc2929B.1.5260.000682
ORF1ab/nsp341A41AgcCgcT2627AY.30.000259
ORF1ab/nsp341A41AgcCgcG127AY.30.00001
ORF1ab/nsp341A41TGccAcc2626A.10.007328
ORF1ab/nsp341A41VgCcgTc2525AY.440.000152
ORF1ab/nsp341A41AgcCgcT2525P.1.140.001195
ORF1ab/nsp341A41AgcCgcT2324B.1.10.000417
ORF1ab/nsp341A41AgcCgcA124B.1.10.000018
ORF1ab/nsp341A41VgCcgTc2323B.1.930.021475
ORF1ab/nsp341A41AgcCgcT2122AY.390.000519
ORF1ab/nsp341A41AgcCgcA122AY.390.000025
ORF1ab/nsp341A41AgcCgcT2222B.1.258.240.236559
ORF1ab/nsp341A41AgcCgcT1821AY.200.0007
ORF1ab/nsp341A41AgcCgcA321AY.200.000117
ORF1ab/nsp341A41VgCcgTc2121B.1.1600.000655
ORF1ab/nsp341A41VgCcgTc2020AY.430.000089
ORF1ab/nsp341A41AgcCgcT2020B.1.1600.000624
ORF1ab/nsp341A41VgCcgTc1919B.1.6210.001682
ORF1ab/nsp341A41VgCcgTc1818AY.750.001008
ORF1ab/nsp341A41VgCcgTc1818B.1.2210.001279
ORF1ab/nsp341A41VgCcgTc1818B.1.3510.000535
ORF1ab/nsp341A41AgcCgcT1717AY.290.000268
ORF1ab/nsp341A41AgcCgcT1717B.1.2400.003665
ORF1ab/nsp341A41DgCcgAc1717P.10.000268
ORF1ab/nsp341A41AgcCgcT1416AY.1020.000371
ORF1ab/nsp341A41AgcCgcA216AY.1020.000053
ORF1ab/nsp341A41AgcCgcT1616AY.270.001036
ORF1ab/nsp341A41AgcCgcT1616B.1.5250.001811
ORF1ab/nsp341A41AgcCgcT1515B.1.6210.001328
ORF1ab/nsp341A41VgCcgTc1414AY.1030.000087
ORF1ab/nsp341A41AgcCgcT1414AY.1200.000521
ORF1ab/nsp341A41GgCcgGc1414B.1.20.000123
ORF1ab/nsp341A41AgcCgcT1414B.1.2360.028747
ORF1ab/nsp341A41VgCcgTc1414B.1.351.50.008393
ORF1ab/nsp341A41AgcCgcT1414B.1.5260.000329
ORF1ab/nsp341A41SGccTcc1313AY.200.000505
ORF1ab/nsp341A41AgcCgcT1313B.1.1.5190.000516
ORF1ab/nsp341A41VgCcgTc1313B.1.4290.000306
ORF1ab/nsp341A41AgcCgcT1212AY.240.005172
ORF1ab/nsp341A41TGccAcc1212B.1.1.70.000011
ORF1ab/nsp341A41VgCcgTc1212B.1.1770.000158
ORF1ab/nsp341A41GgCcgGc1111B.1.1.5190.000437
ORF1ab/nsp341A41VgCcgTc1111B.1.5250.001245
ORF1ab/nsp341A41AgcCgcT1111B.1.5960.000959
ORF1ab/nsp341A41AgcCgcT1010AY.1180.000626
ORF1ab/nsp341A41VgCcgTc1010AY.4.20.000217
ORF1ab/nsp341A41AgcCgcT1010B.1.1.3660.15873
ORF1ab/nsp341A41SGccTcc1010B.1.1.70.000009
ORF1ab/nsp341A41VgCcgTc1010B.1.36.80.01
ORF1ab/nsp341A41VgCcgTc1010C.370.001161
ORF1ab/nsp341A41AgcCgcT99AY.4.2.10.001341
ORF1ab/nsp341A41AgcCgcT99AY.4.30.007576
ORF1ab/nsp341A41VgCcgTc99AY.50.000186
ORF1ab/nsp341A41VgCcgTc99AY.610.000943
ORF1ab/nsp341A41VgCcgTc99B.1.1.3160.008326
ORF1ab/nsp341A41AgcCgcT99B.1.1.3720.006198
ORF1ab/nsp341A41AgcCgcT99B.1.2410.007305
ORF1ab/nsp341A41AgcCgcT99B.1.415.10.068182
ORF1ab/nsp341A41SGccTcc580.277778
ORF1ab/nsp341A41SGcCTcA280.111111
ORF1ab/nsp341A41SGcCTcT180.055556
ORF1ab/nsp341A41VgCcgTc88AY.260.000226
ORF1ab/nsp341A41AgcCgcT78AY.4.20.000152
ORF1ab/nsp341A41AgcCgcA18AY.4.20.000022
ORF1ab/nsp341A41AgcCgcA68AY.540.000572
ORF1ab/nsp341A41AgcCgcT28AY.540.000191
ORF1ab/nsp341A41AgcCgcT88B.1.2430.000557
ORF1ab/nsp341A41AgcCgcT88B.1.5610.003176
ORF1ab/nsp341A41AgcCgcT88B.1.619.10.005131
ORF1ab/nsp341A41AgcCgcT88C.10.019139
ORF1ab/nsp341A41AgcCgcT88C.370.000929
ORF1ab/nsp341A41VgCcgTc88Q.80.001319
ORF1ab/nsp341A41TGccAcc77AY.4.20.000152
ORF1ab/nsp341A41AgcCgcT77AY.610.000733
ORF1ab/nsp341A41VgCcgTc77AY.9.10.000586
ORF1ab/nsp341A41VgCcgTc77B.1.177.810.001325
ORF1ab/nsp341A41AgcCgcT77B.1.177.90.009321
ORF1ab/nsp341A41AgcCgcT57B.1.2210.000355
ORF1ab/nsp341A41AgcCgcA27B.1.2210.000142
ORF1ab/nsp341A41VgCcgTc77B.1.5960.00061
ORF1ab/nsp341A41VgCcgTc77B.1.617.10.000903
ORF1ab/nsp341A41TGccAcc77B.1.617.20.000026
ORF1ab/nsp341A41AgcCgcT77B.1.6280.002467
ORF1ab/nsp341A41GgCcgGc360.166667
ORF1ab/nsp341A41GgCCgGA260.111111
ORF1ab/nsp341A41GgCCgGT160.055556
ORF1ab/nsp341A41AgcCgcT66AY.1060.002009
ORF1ab/nsp341A41DgCcgAc66AY.40.000009
ORF1ab/nsp341A41SGccTcc66AY.40.000009
ORF1ab/nsp341A41AgcCgcT66AY.420.000241
ORF1ab/nsp341A41TGccAcc66AY.430.000027
ORF1ab/nsp341A41VgCcgTc66B.1.1.5190.000238
ORF1ab/nsp341A41VgCcgTc66B.1.177.520.010545
ORF1ab/nsp341A41VgCcgTc66B.1.3110.001647
ORF1ab/nsp341A41VgCcgTc66P.1.140.000287
ORF1ab/nsp341A41AgcCgcT66R.10.00054
ORF1ab/nsp341A41CGCcTGc45All0.000001
ORF1ab/nsp341A41PGccCcc45All0.000001
ORF1ab/nsp341A41PGcCCcT15All0
ORF1ab/nsp341A41CGCCTGT15All0
ORF1ab/nsp341A41AgcCgcT55AY.1000.00023
ORF1ab/nsp341A41VgCcgTc55AY.1200.000186
ORF1ab/nsp341A41TGccAcc55AY.1210.000677
ORF1ab/nsp341A41VgCcgTc55AY.200.000194
ORF1ab/nsp341A41AgcCgcA35AY.230.000209
ORF1ab/nsp341A41AgcCgcT25AY.230.000139
ORF1ab/nsp341A41AgcCgcT55AY.260.000142
ORF1ab/nsp341A41VgCcgTc55AY.29.10.001103
ORF1ab/nsp341A41AgcCgcT55AY.3.10.000426
ORF1ab/nsp341A41VgCcgTc55AY.450.000608
ORF1ab/nsp341A41VgCcgTc55AY.620.002179
ORF1ab/nsp341A41VgCcgTc55AY.840.002187
ORF1ab/nsp341A41AgcCgcT55AY.99.20.000461
ORF1ab/nsp341A41delGCC---55B.10.000046
ORF1ab/nsp341A41VgCcgTc55B.1.1.2140.000277
ORF1ab/nsp341A41delGCC---55B.1.1.70.000004
ORF1ab/nsp341A41VgCcgTc55B.1.230.030303
ORF1ab/nsp341A41AgcCgcT55B.1.240.10.125
ORF1ab/nsp341A41VgCcgTc55B.1.36.160.007123
ORF1ab/nsp341A41AgcCgcT55B.1.617.10.000645
ORF1ab/nsp341A41AgcCgcT55C.260.036765
ORF1ab/nsp341A41AgcCgcT55Q.10.000632
ORF1ab/nsp341A41delGCC---440.222222
ORF1ab/nsp341A41DgCcgAc440.222222
ORF1ab/nsp341A41AgcCgcA340.166667
ORF1ab/nsp341A41CGCcTGc340.166667
ORF1ab/nsp341A41AgcCgcT140.055556
ORF1ab/nsp341A41CGCCTGT140.055556
ORF1ab/nsp341A41VgCcgTc44A.2.50.001996
ORF1ab/nsp341A41EgCCgAA44All0.000001
ORF1ab/nsp341A41YGCcTAc44All0.000001
ORF1ab/nsp341A41IGCCATT24All0
ORF1ab/nsp341A41IGCcATc24All0
ORF1ab/nsp341A41XGCCTAA24All0
ORF1ab/nsp341A41XGCCTGA24All0
ORF1ab/nsp341A41AgcCgcT44AY.1140.000924
ORF1ab/nsp341A41VgCcgTc44AY.120.10.001284
ORF1ab/nsp341A41AgcCgcT34AY.130.000483
ORF1ab/nsp341A41AgcCgcA14AY.130.000161
ORF1ab/nsp341A41VgCcgTc44AY.3.10.000341
ORF1ab/nsp341A41VgCcgTc44AY.560.006421
ORF1ab/nsp341A41AgcCgcT44B.1.1.330.001684
ORF1ab/nsp341A41AgcCgcT44B.1.1.700.001364
ORF1ab/nsp341A41VgCcgTc44B.1.214.20.002398
ORF1ab/nsp341A41AgcCgcT44B.1.2340.000528
ORF1ab/nsp341A41AgcCgcT34B.1.2580.0002
ORF1ab/nsp341A41AgcCgcG14B.1.2580.000067
ORF1ab/nsp341A41VgCcgTc44B.1.5650.003241
ORF1ab/nsp341A41AgcCgcT44B.1.760.045455
ORF1ab/nsp341A41VgCcgTc44B.1.780.034188
ORF1ab/nsp341A41VgCcgTc44C.170.222222
ORF1ab/nsp341A41YGCcTAc330.166667
ORF1ab/nsp341A41XGCCTGA230.111111
ORF1ab/nsp341A41XGCCTAA130.055556
ORF1ab/nsp341A41VgCcgTc33AD.20.000657
ORF1ab/nsp341A41del1gCcg-c23All0
ORF1ab/nsp341A41del1GCc-Ac13All0
ORF1ab/nsp341A41VgCcgTc33AY.1000.000138
ORF1ab/nsp341A41AgcCgcT33AY.1010.001471
ORF1ab/nsp341A41TGccAcc33AY.1180.000188
ORF1ab/nsp341A41SGccTcc33AY.1190.000106
ORF1ab/nsp341A41AgcCgcT33AY.1210.000406
ORF1ab/nsp341A41AgcCgcT33AY.330.0002
ORF1ab/nsp341A41AgcCgcT33AY.4.10.002212
ORF1ab/nsp341A41VgCcgTc33AY.460.000312
ORF1ab/nsp341A41AgcCgcT33AY.46.60.000217
ORF1ab/nsp341A41AgcCgcT33AY.740.000347
ORF1ab/nsp341A41AgcCgcT33AY.750.000168
ORF1ab/nsp341A41AgcCgcA33AY.780.004622
ORF1ab/nsp341A41VgCcgTc33B0.000383
ORF1ab/nsp341A41AgcCgcT33B.1.1.280.000934
ORF1ab/nsp341A41VgCcgTc33B.1.1.2940.003797
ORF1ab/nsp341A41VgCcgTc33B.1.1.3030.008287
ORF1ab/nsp341A41delGCC---33B.1.1.330.001263
ORF1ab/nsp341A41delGCC---33B.1.1.3480.002389
ORF1ab/nsp341A41AgcCgcT33B.1.1.4860.004732
ORF1ab/nsp341A41AgcCgcT33B.1.177.350.002073
ORF1ab/nsp341A41AgcCgcT33B.1.177.460.002755
ORF1ab/nsp341A41VgCcgTc33B.1.177.600.000655
ORF1ab/nsp341A41AgcCgcT23B.1.177.600.000437
ORF1ab/nsp341A41AgcCgcA13B.1.177.600.000218
ORF1ab/nsp341A41SGccTcc23B.1.2210.000142
ORF1ab/nsp341A41SGcCTcA13B.1.2210.000071
ORF1ab/nsp341A41VgCcgTc33B.1.2340.000396
ORF1ab/nsp341A41AgcCgcT33B.1.3060.017143
ORF1ab/nsp341A41AgcCgcT33B.1.3110.000824
ORF1ab/nsp341A41AgcCgcT33B.1.36.290.001552
ORF1ab/nsp341A41VgCcgTc33B.1.36.290.001552
ORF1ab/nsp341A41VgCcgTc33B.1.4270.000151
ORF1ab/nsp341A41AgcCgcT33B.1.438.10.000322
ORF1ab/nsp341A41SGccTcc33B.1.5680.003333
ORF1ab/nsp341A41SGccTcc33B.1.5700.008824
ORF1ab/nsp341A41DgCcgAc33B.1.617.20.000011
ORF1ab/nsp341A41AgcCgcT33B.1.617.30.008955
ORF1ab/nsp341A41VgCcgTc33C.390.056604
ORF1ab/nsp341A41AgcCgcT33M.30.230769
ORF1ab/nsp341A41VgCcgTc33P.1.160.001122
ORF1ab/nsp341A41AgcCgcT33P.20.00056
ORF1ab/nsp341A41EgCCgAA220.111111
ORF1ab/nsp341A41IGCCATT220.111111
ORF1ab/nsp341A41VgCCgTT220.111111
ORF1ab/nsp341A41TGcCAcA120.055556
ORF1ab/nsp341A41TGccAcc120.055556
ORF1ab/nsp341A41AgcCgcT22A.2.50.000998
ORF1ab/nsp341A41VgCcgTc22A.23.10.001408
ORF1ab/nsp341A41AgcCgcT22AE.80.000978
ORF1ab/nsp341A41DgCcgAc22AY.10.000791
ORF1ab/nsp341A41SGccTcc22AY.1030.000012
ORF1ab/nsp341A41AgcCgcT22AY.1100.000225
ORF1ab/nsp341A41SGccTcc22AY.1130.000285
ORF1ab/nsp341A41VgCcgTc22AY.1160.000574
ORF1ab/nsp341A41AgcCgcA12AY.1170.000085
ORF1ab/nsp341A41AgcCgcT12AY.1170.000085
ORF1ab/nsp341A41VgCcgTc22AY.1190.000071
ORF1ab/nsp341A41AgcCgcT22AY.120.2.10.000997
ORF1ab/nsp341A41VgCcgTc22AY.140.000176
ORF1ab/nsp341A41VgCcgTc22AY.230.000139
ORF1ab/nsp341A41TGccAcc22AY.30.00002
ORF1ab/nsp341A41AgcCgcT12AY.360.000148
ORF1ab/nsp341A41AgcCgcA12AY.360.000148
ORF1ab/nsp341A41TGccAcc22AY.40.000003
ORF1ab/nsp341A41VgCcgTc22AY.4.40.000818
ORF1ab/nsp341A41AgcCgcT22AY.450.000243
ORF1ab/nsp341A41AgcCgcT22AY.46.20.001271
ORF1ab/nsp341A41VgCcgTc22AY.46.40.000329
ORF1ab/nsp341A41TGccAcc22AY.470.000062
ORF1ab/nsp341A41VgCcgTc22AY.5.40.000553
ORF1ab/nsp341A41VgCcgTc22AY.650.001066
ORF1ab/nsp341A41AgcCgcT22AY.850.000854
ORF1ab/nsp341A41AgcCgcT22AY.9.10.000167
ORF1ab/nsp341A41AgcCgcT22AY.9.2.10.003953
ORF1ab/nsp341A41AgcCgcT22AY.98.10.000097
ORF1ab/nsp341A41DgCcgAc22B.10.000018
ORF1ab/nsp341A41TGccAcc22B.10.000018
ORF1ab/nsp341A41DgCcgAc22B.1.10.000036
ORF1ab/nsp341A41TGccAcc22B.1.10.000036
ORF1ab/nsp341A41VgCcgTc22B.1.1.10.000653
ORF1ab/nsp341A41AgcCgcT22B.1.1.2140.000111
ORF1ab/nsp341A41SGccTcc22B.1.1.2160.001781
ORF1ab/nsp341A41AgcCgcT22B.1.1.2160.001781
ORF1ab/nsp341A41AgcCgcT22B.1.1.2840.000215
ORF1ab/nsp341A41AgcCgcT22B.1.1.3180.000604
ORF1ab/nsp341A41VgCcgTc22B.1.1.3180.000604
ORF1ab/nsp341A41AgcCgcT22B.1.1.3260.003521
ORF1ab/nsp341A41AgcCgcT22B.1.1.4090.005666
ORF1ab/nsp341A41AgcCgcA22B.1.1.4340.000697
ORF1ab/nsp341A41TGccAcc22B.1.1460.008475
ORF1ab/nsp341A41AgcCgcT22B.1.177.210.000153
ORF1ab/nsp341A41AgcCgcT22B.1.177.560.001335
ORF1ab/nsp341A41VgCcgTc22B.1.177.650.001331
ORF1ab/nsp341A41AgcCgcA22B.1.177.70.00033
ORF1ab/nsp341A41SGccTcc22B.1.20.000018
ORF1ab/nsp341A41PGcCCcT12B.1.20.000009
ORF1ab/nsp341A41PGccCcc12B.1.20.000009
ORF1ab/nsp341A41AgcCgcT22B.1.220.002635
ORF1ab/nsp341A41EgCCgAA22B.1.2210.000142
ORF1ab/nsp341A41DgCcgAc22B.1.2210.000142
ORF1ab/nsp341A41VgCcgTc22B.1.2580.000133
ORF1ab/nsp341A41AgcCgcT22B.1.360.000292
ORF1ab/nsp341A41AgcCgcT22B.1.36.190.018519
ORF1ab/nsp341A41AgcCgcT22B.1.3690.00057
ORF1ab/nsp341A41AgcCgcT22B.1.3750.001639
ORF1ab/nsp341A41VgCcgTc22B.1.4230.020408
ORF1ab/nsp341A41delGCC---22B.1.4240.016129
ORF1ab/nsp341A41VgCcgTc22B.1.4280.002041
ORF1ab/nsp341A41delGCC---22B.1.4290.000047
ORF1ab/nsp341A41PGccCcc22B.1.4290.000047
ORF1ab/nsp341A41AgcCgcT22B.1.466.20.000782
ORF1ab/nsp341A41VgCcgTc22B.1.466.20.000782
ORF1ab/nsp341A41SGccTcc22B.1.617.20.000008
ORF1ab/nsp341A41AgcCgcT12B.1.6230.000536
ORF1ab/nsp341A41AgcCgcA12B.1.6230.000536
ORF1ab/nsp341A41VgCcgTc22B.1.810.042553
ORF1ab/nsp341A41AgcCgcT22B.30.001661
ORF1ab/nsp341A41AgcCgcT22B.4.80.142857
ORF1ab/nsp341A41VgCcgTc22C.40.02
ORF1ab/nsp341A41delGCC---22N.60.014184
ORF1ab/nsp341A41delGCC---22P.10.000032
ORF1ab/nsp341A41VgCcgTc22P.1.10.000635
ORF1ab/nsp341A41VgCcgTc22P.1.150.000465
ORF1ab/nsp341A41AgcCgcT22P.1.170.000324
ORF1ab/nsp341A41VgCcgTc22P.20.000373
ORF1ab/nsp341A41NGCcAAc110.055556
ORF1ab/nsp341A41KGCCAAA110.055556
ORF1ab/nsp341A41VgCcgTc11A0.000387
ORF1ab/nsp341A41KGCCAAA11All0
ORF1ab/nsp341A41NGCcAAc11All0
ORF1ab/nsp341A41VgCcgTc11AY.10.000396
ORF1ab/nsp341A41TGccAcc11AY.1000.000046
ORF1ab/nsp341A41VgCcgTc11AY.1010.00049
ORF1ab/nsp341A41TGccAcc11AY.1020.000027
ORF1ab/nsp341A41DgCcgAc11AY.1030.000006
ORF1ab/nsp341A41AgcCgcT11AY.1070.000466
ORF1ab/nsp341A41VgCcgTc11AY.1110.000183
ORF1ab/nsp341A41VgCcgTc11AY.1130.000142
ORF1ab/nsp341A41TGccAcc11AY.1160.000287
ORF1ab/nsp341A41AgcCgcT11AY.1160.000287
ORF1ab/nsp341A41TGccAcc11AY.1190.000035
ORF1ab/nsp341A41AgcCgcT11AY.120.000316
ORF1ab/nsp341A41AgcCgcT11AY.140.000088
ORF1ab/nsp341A41TGccAcc11AY.200.000039
ORF1ab/nsp341A41SGccTcc11AY.230.00007
ORF1ab/nsp341A41VgCcgTc11AY.320.000532
ORF1ab/nsp341A41AgcCgcT11AY.34.10.00051
ORF1ab/nsp341A41VgCcgTc11AY.360.000148
ORF1ab/nsp341A41VgCcgTc11AY.380.000499
ORF1ab/nsp341A41TGccAcc11AY.390.000025
ORF1ab/nsp341A41AgcCgcT11AY.4.50.000107
ORF1ab/nsp341A41VgCcgTc11AY.420.00004
ORF1ab/nsp341A41DgCcgAc11AY.440.000006
ORF1ab/nsp341A41del1GCc-Ac11AY.440.000006
ORF1ab/nsp341A41TGccAcc11AY.440.000006
ORF1ab/nsp341A41AgcCgcT11AY.460.000104
ORF1ab/nsp341A41AgcCgcT11AY.46.10.001027
ORF1ab/nsp341A41VgCcgTc11AY.46.20.000635
ORF1ab/nsp341A41AgcCgcT11AY.46.30.000934
ORF1ab/nsp341A41AgcCgcT11AY.46.40.000165
ORF1ab/nsp341A41AgcCgcT11AY.46.50.000198
ORF1ab/nsp341A41AgcCgcT11AY.470.000031
ORF1ab/nsp341A41AgcCgcT11AY.480.000465
ORF1ab/nsp341A41VgCcgTc11AY.480.000465
ORF1ab/nsp341A41AgcCgcT11AY.5.30.000337
ORF1ab/nsp341A41VgCcgTc11AY.520.000814
ORF1ab/nsp341A41SGccTcc11AY.540.000095
ORF1ab/nsp341A41VgCcgTc11AY.540.000095
ORF1ab/nsp341A41VgCcgTc11AY.550.000917
ORF1ab/nsp341A41AgcCgcT11AY.560.001605
ORF1ab/nsp341A41VgCcgTc11AY.590.00053
ORF1ab/nsp341A41delGCC---11AY.60.000041
ORF1ab/nsp341A41AgcCgcT11AY.60.000041
ORF1ab/nsp341A41VgCcgTc11AY.670.000464
ORF1ab/nsp341A41CGCcTGc11AY.670.000464
ORF1ab/nsp341A41AgcCgcT11AY.670.000464
ORF1ab/nsp341A41AgcCgcT11AY.690.000187
ORF1ab/nsp341A41AgcCgcT11AY.7.10.000113
ORF1ab/nsp341A41VgCcgTc11AY.7.10.000113
ORF1ab/nsp341A41AgcCgcT11AY.700.000209
ORF1ab/nsp341A41TGccAcc11AY.750.000056
ORF1ab/nsp341A41VgCcgTc11AY.75.10.00018
ORF1ab/nsp341A41TGccAcc11AY.790.001211
ORF1ab/nsp341A41AgcCgcT11AY.790.001211
ORF1ab/nsp341A41TGccAcc11AY.840.000437
ORF1ab/nsp341A41VgCcgTc11AY.850.000427
ORF1ab/nsp341A41AgcCgcT11AY.9.20.000037
ORF1ab/nsp341A41delGCC---11AY.9.20.000037
ORF1ab/nsp341A41VgCcgTc11AY.9.2.10.001976
ORF1ab/nsp341A41AgcCgcT11AY.920.000287
ORF1ab/nsp341A41VgCcgTc11AY.980.000079
ORF1ab/nsp341A41AgcCgcT11AY.980.000079
ORF1ab/nsp341A41TGccAcc11AY.980.000079
ORF1ab/nsp341A41SGccTcc11AY.980.000079
ORF1ab/nsp341A41VgCcgTc11AY.98.10.000048
ORF1ab/nsp341A41AgcCgcT11AY.99.10.001553
ORF1ab/nsp341A41VgCcgTc11AY.99.20.000092
ORF1ab/nsp341A41AgcCgcT11AZ.20.000821
ORF1ab/nsp341A41AgcCgcT11B0.000128
ORF1ab/nsp341A41GgCcgGc11B.10.000009
ORF1ab/nsp341A41PGccCcc11B.10.000009
ORF1ab/nsp341A41delGCC---11B.1.10.000018
ORF1ab/nsp341A41AgcCgcT11B.1.1.100.001115
ORF1ab/nsp341A41AgcCgcT11B.1.1.1420.017544
ORF1ab/nsp341A41AgcCgcT11B.1.1.1570.000913
ORF1ab/nsp341A41AgcCgcT11B.1.1.1650.015385
ORF1ab/nsp341A41AgcCgcT11B.1.1.1720.018182
ORF1ab/nsp341A41AgcCgcT11B.1.1.1740.003378
ORF1ab/nsp341A41VgCcgTc11B.1.1.2070.001182
ORF1ab/nsp341A41VgCcgTc11B.1.1.2160.00089
ORF1ab/nsp341A41AgcCgcT11B.1.1.2220.000204
ORF1ab/nsp341A41VgCcgTc11B.1.1.2220.000204
ORF1ab/nsp341A41VgCcgTc11B.1.1.2430.004082
ORF1ab/nsp341A41AgcCgcT11B.1.1.250.000569
ORF1ab/nsp341A41VgCcgTc11B.1.1.250.000569
ORF1ab/nsp341A41AgcCgcT11B.1.1.270.00565
ORF1ab/nsp341A41VgCcgTc11B.1.1.280.000311
ORF1ab/nsp341A41AgcCgcT11B.1.1.2970.002237
ORF1ab/nsp341A41DgCcgAc11B.1.1.30.008696
ORF1ab/nsp341A41TGccAcc11B.1.1.3060.000438
ORF1ab/nsp341A41AgcCgcT11B.1.1.3060.000438
ORF1ab/nsp341A41VgCcgTc11B.1.1.3110.000358
ORF1ab/nsp341A41AgcCgcT11B.1.1.3160.000925
ORF1ab/nsp341A41VgCcgTc11B.1.1.330.000421
ORF1ab/nsp341A41AgcCgcT11B.1.1.3690.000446
ORF1ab/nsp341A41VgCcgTc11B.1.1.3720.000689
ORF1ab/nsp341A41AgcCgcT11B.1.1.4120.007634
ORF1ab/nsp341A41delGCC---11B.1.1.4160.000905
ORF1ab/nsp341A41VgCcgTc11B.1.1.4200.001006
ORF1ab/nsp341A41VgCcgTc11B.1.1.4250.045455
ORF1ab/nsp341A41AgcCgcT11B.1.1.4320.001266
ORF1ab/nsp341A41VgCcgTc11B.1.1.440.00241
ORF1ab/nsp341A41VgCcgTc11B.1.1.4850.016667
ORF1ab/nsp341A41AgcCgcT11B.1.1.500.000679
ORF1ab/nsp341A41IGCcATc11B.1.1.500.000679
ORF1ab/nsp341A41AgcCgcT11B.1.1.5260.003546
ORF1ab/nsp341A41AgcCgcT11B.1.1.630.000386
ORF1ab/nsp341A41VgCcgTc11B.1.1.630.000386
ORF1ab/nsp341A41DgCcgAc11B.1.1.70.000001
ORF1ab/nsp341A41IGCcATc11B.1.1.70.000001
ORF1ab/nsp341A41delGCC---11B.1.1.700.000341
ORF1ab/nsp341A41AgcCgcT11B.1.1.830.00271
ORF1ab/nsp341A41AgcCgcT11B.1.1.990.02381
ORF1ab/nsp341A41AgcCgcT11B.1.1460.004237
ORF1ab/nsp341A41AgcCgcT11B.1.1570.002985
ORF1ab/nsp341A41AgcCgcT11B.1.160.160.000929
ORF1ab/nsp341A41SGccTcc11B.1.1770.000013
ORF1ab/nsp341A41VgCcgTc11B.1.177.100.000878
ORF1ab/nsp341A41delGCC---11B.1.177.510.004566
ORF1ab/nsp341A41AgcCgcT11B.1.177.570.000281
ORF1ab/nsp341A41VgCcgTc11B.1.177.70.000165
ORF1ab/nsp341A41del1gCcg-c11B.1.177.730.000566
ORF1ab/nsp341A41AgcCgcT11B.1.177.770.000726
ORF1ab/nsp341A41VgCcgTc11B.1.177.80.000752
ORF1ab/nsp341A41AgcCgcT11B.1.177.800.001912
ORF1ab/nsp341A41AgcCgcT11B.1.177.880.012346
ORF1ab/nsp341A41XGCCTAA11B.1.2210.000071
ORF1ab/nsp341A41YGCcTAc11B.1.2210.000071
ORF1ab/nsp341A41VgCcgTc11B.1.2220.001692
ORF1ab/nsp341A41AgcCgcT11B.1.2380.014925
ORF1ab/nsp341A41SGccTcc11B.1.2580.000067
ORF1ab/nsp341A41AgcCgcT11B.1.258.170.000104
ORF1ab/nsp341A41VgCcgTc11B.1.258.170.000104
ORF1ab/nsp341A41VgCcgTc11B.1.2600.003344
ORF1ab/nsp341A41AgcCgcT11B.1.2650.001271
ORF1ab/nsp341A41VgCcgTc11B.1.2790.000514
ORF1ab/nsp341A41VgCcgTc11B.1.2980.002114
ORF1ab/nsp341A41AgcCgcT11B.1.3460.001311
ORF1ab/nsp341A41AgcCgcT11B.1.351.20.000303
ORF1ab/nsp341A41AgcCgcT11B.1.3560.001727
ORF1ab/nsp341A41VgCcgTc11B.1.360.000146
ORF1ab/nsp341A41AgcCgcT11B.1.36.100.004785
ORF1ab/nsp341A41AgcCgcT11B.1.36.180.00042
ORF1ab/nsp341A41VgCcgTc11B.1.36.190.009259
ORF1ab/nsp341A41VgCcgTc11B.1.36.220.001208
ORF1ab/nsp341A41VgCcgTc11B.1.36.240.006173
ORF1ab/nsp341A41AgcCgcT11B.1.36.270.000763
ORF1ab/nsp341A41del1gCcg-c11B.1.36.290.000517
ORF1ab/nsp341A41AgcCgcT11B.1.36.360.000602
ORF1ab/nsp341A41VgCcgTc11B.1.36.380.001642
ORF1ab/nsp341A41AgcCgcT11B.1.3610.001289
ORF1ab/nsp341A41VgCcgTc11B.1.3690.000285
ORF1ab/nsp341A41VgCcgTc11B.1.3750.00082
ORF1ab/nsp341A41VgCcgTc11B.1.3980.002976
ORF1ab/nsp341A41AgcCgcT11B.1.4110.003704
ORF1ab/nsp341A41AgcCgcT11B.1.4360.001029
ORF1ab/nsp341A41AgcCgcA11B.1.4390.005917
ORF1ab/nsp341A41VgCcgTc11B.1.4590.004082
ORF1ab/nsp341A41VgCcgTc11B.1.4970.000315
ORF1ab/nsp341A41AgcCgcT11B.1.4970.000315
ORF1ab/nsp341A41AgcCgcT11B.1.4990.00105
ORF1ab/nsp341A41AgcCgcT11B.1.5090.000866
ORF1ab/nsp341A41AgcCgcT11B.1.5160.001957
ORF1ab/nsp341A41VgCcgTc11B.1.5170.000427
ORF1ab/nsp341A41AgcCgcT11B.1.5170.000427
ORF1ab/nsp341A41AgcCgcT11B.1.5380.008065
ORF1ab/nsp341A41delGCC---11B.1.5610.000397
ORF1ab/nsp341A41VgCcgTc11B.1.5610.000397
ORF1ab/nsp341A41VgCcgTc11B.1.5670.003333
ORF1ab/nsp341A41VgCcgTc11B.1.5760.000907
ORF1ab/nsp341A41AgcCgcT11B.1.5910.010638
ORF1ab/nsp341A41TGccAcc11B.1.5960.000087
ORF1ab/nsp341A41VgCcgTc11B.1.5970.00463
ORF1ab/nsp341A41AgcCgcT11B.1.6010.030303
ORF1ab/nsp341A41TGccAcc11B.1.6210.000089
ORF1ab/nsp341A41AgcCgcT11B.400.000364
ORF1ab/nsp341A41delGCC---11B.570.015152
ORF1ab/nsp341A41AgcCgcT11B.580.010204
ORF1ab/nsp341A41VgCcgTc11B.6.60.000889
ORF1ab/nsp341A41AgcCgcT11C.140.004329
ORF1ab/nsp341A41AgcCgcT11C.160.00106
ORF1ab/nsp341A41VgCcgTc11C.160.00106
ORF1ab/nsp341A41AgcCgcA11C.180.002591
ORF1ab/nsp341A41SGccTcc11C.260.007353
ORF1ab/nsp341A41AgcCgcT11C.270.018519
ORF1ab/nsp341A41VgCcgTc11D.20.000075
ORF1ab/nsp341A41AgcCgcT11K.30.006173
ORF1ab/nsp341A41VgCcgTc11N.30.005814
ORF1ab/nsp341A41AgcCgcT11N.50.001767
ORF1ab/nsp341A41TGccAcc11P.1.10.000318
ORF1ab/nsp341A41VgCcgTc11P.1.120.000484
ORF1ab/nsp341A41AgcCgcT11P.1.150.000232
ORF1ab/nsp341A41AgcCgcA11P.1.70.000319
ORF1ab/nsp341A41AgcCgcT11P.30.001595
ORF1ab/nsp341A41AgcCgcT11P.70.004367
ORF1ab/nsp341A41VgCcgTc11Q.40.000455
ORF1ab/nsp341A41AgcCgcT11Q.80.000165
ORF1ab/nsp341A41AgcCgcT11W.40.001351
ORF1ab/nsp341A41AgcCgcT11Z.10.00289