CoV-GLUE | Mutations | Mutation
Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):
ORF | CodonNum | Mut | ORF1abMut | MutType | RefCodon | MutCodon | AACount | CodonCount | CodonProp | Genome Position |
ORF1ab/nsp3 | 41 | A41V | A859V | nonsyn | gCc | gTc | 8811 | 8804 | 0.999206 | 2840-2842 |
ORF1ab/nsp3 | 41 | A41V | A859V | nonsyn | gCC | gTT | 8811 | 7 | 0.000794461 | 2840-2842 |
ORF1ab/nsp3 | 41 | A41A | A859A | syn | gcC | gcT | 8671 | 8378 | 0.966209 | 2840-2842 |
ORF1ab/nsp3 | 41 | A41A | A859A | syn | gcC | gcA | 8671 | 285 | 0.0328682 | 2840-2842 |
ORF1ab/nsp3 | 41 | A41A | A859A | syn | gcC | gcG | 8671 | 8 | 0.000922616 | 2840-2842 |
ORF1ab/nsp3 | 41 | A41T | A859T | nonsyn | Gcc | Acc | 356 | 355 | 0.997191 | 2840-2842 |
ORF1ab/nsp3 | 41 | A41T | A859T | nonsyn | GcC | AcA | 356 | 1 | 0.00280899 | 2840-2842 |
ORF1ab/nsp3 | 41 | A41S | A859S | nonsyn | Gcc | Tcc | 65 | 61 | 0.938462 | 2840-2842 |
ORF1ab/nsp3 | 41 | A41S | A859S | nonsyn | GcC | TcA | 65 | 3 | 0.0461538 | 2840-2842 |
ORF1ab/nsp3 | 41 | A41S | A859S | nonsyn | GcC | TcT | 65 | 1 | 0.0153846 | 2840-2842 |
ORF1ab/nsp3 | 41 | A41D | A859D | nonsyn | gCc | gAc | 42 | 42 | 1 | 2840-2842 |
ORF1ab/nsp3 | 41 | A41del | A859del | del | GCC | --- | 36 | 36 | 1 | 2840-2842 |
ORF1ab/nsp3 | 41 | A41G | A859G | nonsyn | gCc | gGc | 32 | 29 | 0.90625 | 2840-2842 |
ORF1ab/nsp3 | 41 | A41G | A859G | nonsyn | gCC | gGA | 32 | 2 | 0.0625 | 2840-2842 |
ORF1ab/nsp3 | 41 | A41G | A859G | nonsyn | gCC | gGT | 32 | 1 | 0.03125 | 2840-2842 |
ORF1ab/nsp3 | 41 | A41C | A859C | nonsyn | GCc | TGc | 5 | 4 | 0.8 | 2840-2842 |
ORF1ab/nsp3 | 41 | A41P | A859P | nonsyn | Gcc | Ccc | 5 | 4 | 0.8 | 2840-2842 |
ORF1ab/nsp3 | 41 | A41C | A859C | nonsyn | GCC | TGT | 5 | 1 | 0.2 | 2840-2842 |
ORF1ab/nsp3 | 41 | A41P | A859P | nonsyn | GcC | CcT | 5 | 1 | 0.2 | 2840-2842 |
ORF1ab/nsp3 | 41 | A41E | A859E | nonsyn | gCC | gAA | 4 | 4 | 1 | 2840-2842 |
ORF1ab/nsp3 | 41 | A41Y | A859Y | nonsyn | GCc | TAc | 4 | 4 | 1 | 2840-2842 |
ORF1ab/nsp3 | 41 | A41I | A859I | nonsyn | GCC | ATT | 4 | 2 | 0.5 | 2840-2842 |
ORF1ab/nsp3 | 41 | A41X | A859X | nonsyn | GCC | TGA | 4 | 2 | 0.5 | 2840-2842 |
ORF1ab/nsp3 | 41 | A41X | A859X | nonsyn | GCC | TAA | 4 | 2 | 0.5 | 2840-2842 |
ORF1ab/nsp3 | 41 | A41I | A859I | nonsyn | GCc | ATc | 4 | 2 | 0.5 | 2840-2842 |
ORF1ab/nsp3 | 41 | A41del1 | A859del1 | del | gCc | g-c | 3 | 2 | 0.666667 | 2840-2842 |
ORF1ab/nsp3 | 41 | A41del1 | A859del1 | del | GCc | -Ac | 3 | 1 | 0.333333 | 2840-2842 |
ORF1ab/nsp3 | 41 | A41K | A859K | nonsyn | GCC | AAA | 1 | 1 | 1 | 2840-2842 |
ORF1ab/nsp3 | 41 | A41N | A859N | nonsyn | GCc | AAc | 1 | 1 | 1 | 2840-2842 |
Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):
ORF | CodonNum | Mut | RefCodon | MutCodon | CodonCount | AACount | Lineage | LineageCodonProp |
ORF1ab/nsp3 | 41 | A41V | gCc | gTc | 8804 | 8811 | All | 0.001684 |
ORF1ab/nsp3 | 41 | A41V | gCC | gTT | 7 | 8811 | All | 0.000001 |
ORF1ab/nsp3 | 41 | A41A | gcC | gcT | 8378 | 8671 | All | 0.001602 |
ORF1ab/nsp3 | 41 | A41A | gcC | gcA | 285 | 8671 | All | 0.000055 |
ORF1ab/nsp3 | 41 | A41A | gcC | gcG | 8 | 8671 | All | 0.000002 |
ORF1ab/nsp3 | 41 | A41A | gcC | gcT | 4295 | 4322 | B.1.1.7 | 0.003845 |
ORF1ab/nsp3 | 41 | A41A | gcC | gcA | 26 | 4322 | B.1.1.7 | 0.000023 |
ORF1ab/nsp3 | 41 | A41A | gcC | gcG | 1 | 4322 | B.1.1.7 | 0.000001 |
ORF1ab/nsp3 | 41 | A41V | gCc | gTc | 2614 | 2614 | B.1.1.7 | 0.00234 |
ORF1ab/nsp3 | 41 | A41V | gCc | gTc | 1675 | 1680 | C.36.3 | 0.950085 |
ORF1ab/nsp3 | 41 | A41V | gCC | gTT | 5 | 1680 | C.36.3 | 0.002836 |
ORF1ab/nsp3 | 41 | A41V | gCc | gTc | 1672 | 1672 | P.1.10 | 0.450552 |
ORF1ab/nsp3 | 41 | A41A | gcC | gcT | 1306 | 1317 | AY.4 | 0.002033 |
ORF1ab/nsp3 | 41 | A41A | gcC | gcA | 11 | 1317 | AY.4 | 0.000017 |
ORF1ab/nsp3 | 41 | A41V | gCc | gTc | 560 | 560 | C.36 | 0.510018 |
ORF1ab/nsp3 | 41 | A41A | gcC | gcT | 380 | 381 | B.1.2 | 0.003346 |
ORF1ab/nsp3 | 41 | A41A | gcC | gcG | 1 | 381 | B.1.2 | 0.000009 |
ORF1ab/nsp3 | 41 | A41V | gCc | gTc | 360 | 360 | AY.29 | 0.005679 |
ORF1ab/nsp3 | 41 | A41T | Gcc | Acc | 355 | 356 | All | 0.000068 |
ORF1ab/nsp3 | 41 | A41T | GcC | AcA | 1 | 356 | All | 0 |
ORF1ab/nsp3 | 41 | A41A | gcC | gcT | 329 | 340 | AY.43 | 0.001458 |
ORF1ab/nsp3 | 41 | A41A | gcC | gcA | 11 | 340 | AY.43 | 0.000049 |
ORF1ab/nsp3 | 41 | A41V | gCc | gTc | 306 | 306 | C.36.3.1 | 0.831522 |
ORF1ab/nsp3 | 41 | A41A | gcC | gcT | 123 | 219 | B.1.617.2 | 0.000463 |
ORF1ab/nsp3 | 41 | A41A | gcC | gcA | 96 | 219 | B.1.617.2 | 0.000361 |
ORF1ab/nsp3 | 41 | A41V | gCc | gTc | 189 | 189 | AY.4 | 0.000294 |
ORF1ab/nsp3 | 41 | A41A | gcC | gcT | 179 | 180 | B.1.429 | 0.004212 |
ORF1ab/nsp3 | 41 | A41A | gcC | gcA | 1 | 180 | B.1.429 | 0.000024 |
ORF1ab/nsp3 | 41 | A41A | gcC | gcT | 164 | 164 | AY.113 | 0.023352 |
ORF1ab/nsp3 | 41 | A41A | gcC | gcT | 148 | 158 | AY.44 | 0.000901 |
ORF1ab/nsp3 | 41 | A41A | gcC | gcA | 10 | 158 | AY.44 | 0.000061 |
ORF1ab/nsp3 | 41 | A41T | Gcc | Acc | 128 | 128 | AY.25 | 0.00077 |
ORF1ab/nsp3 | 41 | A41V | gCc | gTc | 127 | 127 | B.1.617.2 | 0.000478 |
ORF1ab/nsp3 | 41 | A41A | gcC | gcT | 110 | 113 | B.1.177 | 0.001448 |
ORF1ab/nsp3 | 41 | A41A | gcC | gcG | 3 | 113 | B.1.177 | 0.00004 |
ORF1ab/nsp3 | 41 | A41A | gcC | gcT | 98 | 101 | AY.25 | 0.000589 |
ORF1ab/nsp3 | 41 | A41A | gcC | gcA | 3 | 101 | AY.25 | 0.000018 |
ORF1ab/nsp3 | 41 | A41V | gCc | gTc | 81 | 81 | P.1.10.1 | 0.658537 |
ORF1ab/nsp3 | 41 | A41A | gcC | gcA | 78 | 78 | AY.16.1 | 0.036654 |
ORF1ab/nsp3 | 41 | A41V | gCc | gTc | 75 | 75 | AY.47 | 0.002333 |
ORF1ab/nsp3 | 41 | A41A | gcC | gcT | 71 | 71 | AY.5 | 0.001466 |
ORF1ab/nsp3 | 41 | A41A | gcC | gcT | 70 | 71 | P.1 | 0.001103 |
ORF1ab/nsp3 | 41 | A41A | gcC | gcG | 1 | 71 | P.1 | 0.000016 |
ORF1ab/nsp3 | 41 | A41A | gcC | gcT | 58 | 67 | B.1 | 0.000531 |
ORF1ab/nsp3 | 41 | A41A | gcC | gcA | 9 | 67 | B.1 | 0.000082 |
ORF1ab/nsp3 | 41 | A41V | gCc | gTc | 66 | 66 | P.1 | 0.00104 |
ORF1ab/nsp3 | 41 | A41S | Gcc | Tcc | 61 | 65 | All | 0.000012 |
ORF1ab/nsp3 | 41 | A41S | GcC | TcA | 3 | 65 | All | 0.000001 |
ORF1ab/nsp3 | 41 | A41S | GcC | TcT | 1 | 65 | All | 0 |
ORF1ab/nsp3 | 41 | A41T | Gcc | Acc | 65 | 65 | AY.4.2.1 | 0.009684 |
ORF1ab/nsp3 | 41 | A41A | gcC | gcT | 62 | 63 | AY.119 | 0.002189 |
ORF1ab/nsp3 | 41 | A41A | gcC | gcA | 1 | 63 | AY.119 | 0.000035 |
ORF1ab/nsp3 | 41 | A41V | gCc | gTc | 59 | 59 | AY.3 | 0.000587 |
ORF1ab/nsp3 | 41 | A41V | gCc | gTc | 51 | 51 | B.1.2 | 0.000449 |
ORF1ab/nsp3 | 41 | A41V | gCc | gTc | 49 | 49 | AY.39 | 0.001211 |
ORF1ab/nsp3 | 41 | A41V | gCc | gTc | 47 | 47 | AY.102 | 0.001246 |
ORF1ab/nsp3 | 41 | A41V | gCc | gTc | 47 | 47 | AY.13 | 0.007566 |
ORF1ab/nsp3 | 41 | A41V | gCc | gTc | 45 | 45 | B.1.243 | 0.003131 |
ORF1ab/nsp3 | 41 | A41A | gcC | gcT | 45 | 45 | B.1.427 | 0.002272 |
ORF1ab/nsp3 | 41 | A41A | gcC | gcT | 44 | 44 | B.1.177.81 | 0.00833 |
ORF1ab/nsp3 | 41 | A41V | gCc | gTc | 43 | 43 | B.1.1.333 | 0.046286 |
ORF1ab/nsp3 | 41 | A41D | gCc | gAc | 42 | 42 | All | 0.000008 |
ORF1ab/nsp3 | 41 | A41V | gCc | gTc | 42 | 42 | AY.25 | 0.000253 |
ORF1ab/nsp3 | 41 | A41A | gcC | gcT | 40 | 41 | AY.103 | 0.000248 |
ORF1ab/nsp3 | 41 | A41A | gcC | gcA | 1 | 41 | AY.103 | 0.000006 |
ORF1ab/nsp3 | 41 | A41A | gcC | gcT | 37 | 37 | AY.93 | 0.010104 |
ORF1ab/nsp3 | 41 | A41V | gCc | gTc | 37 | 37 | B.1 | 0.000339 |
ORF1ab/nsp3 | 41 | A41T | Gcc | Acc | 37 | 37 | B.1.1.519 | 0.001469 |
ORF1ab/nsp3 | 41 | A41del | GCC | --- | 36 | 36 | All | 0.000007 |
ORF1ab/nsp3 | 41 | A41A | gcC | gcT | 34 | 34 | B.1.400 | 0.014586 |
ORF1ab/nsp3 | 41 | A41G | gCc | gGc | 29 | 32 | All | 0.000006 |
ORF1ab/nsp3 | 41 | A41G | gCC | gGA | 2 | 32 | All | 0 |
ORF1ab/nsp3 | 41 | A41G | gCC | gGT | 1 | 32 | All | 0 |
ORF1ab/nsp3 | 41 | A41T | Gcc | Acc | 31 | 31 | AY.120 | 0.001153 |
ORF1ab/nsp3 | 41 | A41A | gcC | gcT | 29 | 30 | B.1.351 | 0.000862 |
ORF1ab/nsp3 | 41 | A41A | gcC | gcA | 1 | 30 | B.1.351 | 0.00003 |
ORF1ab/nsp3 | 41 | A41V | gCc | gTc | 29 | 29 | B.1.1 | 0.000526 |
ORF1ab/nsp3 | 41 | A41V | gCc | gTc | 29 | 29 | B.1.160.25 | 0.322222 |
ORF1ab/nsp3 | 41 | A41V | gCc | gTc | 29 | 29 | B.1.526 | 0.000682 |
ORF1ab/nsp3 | 41 | A41A | gcC | gcT | 26 | 27 | AY.3 | 0.000259 |
ORF1ab/nsp3 | 41 | A41A | gcC | gcG | 1 | 27 | AY.3 | 0.00001 |
ORF1ab/nsp3 | 41 | A41T | Gcc | Acc | 26 | 26 | A.1 | 0.007328 |
ORF1ab/nsp3 | 41 | A41V | gCc | gTc | 25 | 25 | AY.44 | 0.000152 |
ORF1ab/nsp3 | 41 | A41A | gcC | gcT | 25 | 25 | P.1.14 | 0.001195 |
ORF1ab/nsp3 | 41 | A41A | gcC | gcT | 23 | 24 | B.1.1 | 0.000417 |
ORF1ab/nsp3 | 41 | A41A | gcC | gcA | 1 | 24 | B.1.1 | 0.000018 |
ORF1ab/nsp3 | 41 | A41V | gCc | gTc | 23 | 23 | B.1.93 | 0.021475 |
ORF1ab/nsp3 | 41 | A41A | gcC | gcT | 21 | 22 | AY.39 | 0.000519 |
ORF1ab/nsp3 | 41 | A41A | gcC | gcA | 1 | 22 | AY.39 | 0.000025 |
ORF1ab/nsp3 | 41 | A41A | gcC | gcT | 22 | 22 | B.1.258.24 | 0.236559 |
ORF1ab/nsp3 | 41 | A41A | gcC | gcT | 18 | 21 | AY.20 | 0.0007 |
ORF1ab/nsp3 | 41 | A41A | gcC | gcA | 3 | 21 | AY.20 | 0.000117 |
ORF1ab/nsp3 | 41 | A41V | gCc | gTc | 21 | 21 | B.1.160 | 0.000655 |
ORF1ab/nsp3 | 41 | A41V | gCc | gTc | 20 | 20 | AY.43 | 0.000089 |
ORF1ab/nsp3 | 41 | A41A | gcC | gcT | 20 | 20 | B.1.160 | 0.000624 |
ORF1ab/nsp3 | 41 | A41V | gCc | gTc | 19 | 19 | B.1.621 | 0.001682 |
ORF1ab/nsp3 | 41 | A41V | gCc | gTc | 18 | 18 | AY.75 | 0.001008 |
ORF1ab/nsp3 | 41 | A41V | gCc | gTc | 18 | 18 | B.1.221 | 0.001279 |
ORF1ab/nsp3 | 41 | A41V | gCc | gTc | 18 | 18 | B.1.351 | 0.000535 |
ORF1ab/nsp3 | 41 | A41A | gcC | gcT | 17 | 17 | AY.29 | 0.000268 |
ORF1ab/nsp3 | 41 | A41A | gcC | gcT | 17 | 17 | B.1.240 | 0.003665 |
ORF1ab/nsp3 | 41 | A41D | gCc | gAc | 17 | 17 | P.1 | 0.000268 |
ORF1ab/nsp3 | 41 | A41A | gcC | gcT | 14 | 16 | AY.102 | 0.000371 |
ORF1ab/nsp3 | 41 | A41A | gcC | gcA | 2 | 16 | AY.102 | 0.000053 |
ORF1ab/nsp3 | 41 | A41A | gcC | gcT | 16 | 16 | AY.27 | 0.001036 |
ORF1ab/nsp3 | 41 | A41A | gcC | gcT | 16 | 16 | B.1.525 | 0.001811 |
ORF1ab/nsp3 | 41 | A41A | gcC | gcT | 15 | 15 | B.1.621 | 0.001328 |
ORF1ab/nsp3 | 41 | A41V | gCc | gTc | 14 | 14 | AY.103 | 0.000087 |
ORF1ab/nsp3 | 41 | A41A | gcC | gcT | 14 | 14 | AY.120 | 0.000521 |
ORF1ab/nsp3 | 41 | A41G | gCc | gGc | 14 | 14 | B.1.2 | 0.000123 |
ORF1ab/nsp3 | 41 | A41A | gcC | gcT | 14 | 14 | B.1.236 | 0.028747 |
ORF1ab/nsp3 | 41 | A41V | gCc | gTc | 14 | 14 | B.1.351.5 | 0.008393 |
ORF1ab/nsp3 | 41 | A41A | gcC | gcT | 14 | 14 | B.1.526 | 0.000329 |
ORF1ab/nsp3 | 41 | A41S | Gcc | Tcc | 13 | 13 | AY.20 | 0.000505 |
ORF1ab/nsp3 | 41 | A41A | gcC | gcT | 13 | 13 | B.1.1.519 | 0.000516 |
ORF1ab/nsp3 | 41 | A41V | gCc | gTc | 13 | 13 | B.1.429 | 0.000306 |
ORF1ab/nsp3 | 41 | A41A | gcC | gcT | 12 | 12 | AY.24 | 0.005172 |
ORF1ab/nsp3 | 41 | A41T | Gcc | Acc | 12 | 12 | B.1.1.7 | 0.000011 |
ORF1ab/nsp3 | 41 | A41V | gCc | gTc | 12 | 12 | B.1.177 | 0.000158 |
ORF1ab/nsp3 | 41 | A41G | gCc | gGc | 11 | 11 | B.1.1.519 | 0.000437 |
ORF1ab/nsp3 | 41 | A41V | gCc | gTc | 11 | 11 | B.1.525 | 0.001245 |
ORF1ab/nsp3 | 41 | A41A | gcC | gcT | 11 | 11 | B.1.596 | 0.000959 |
ORF1ab/nsp3 | 41 | A41A | gcC | gcT | 10 | 10 | AY.118 | 0.000626 |
ORF1ab/nsp3 | 41 | A41V | gCc | gTc | 10 | 10 | AY.4.2 | 0.000217 |
ORF1ab/nsp3 | 41 | A41A | gcC | gcT | 10 | 10 | B.1.1.366 | 0.15873 |
ORF1ab/nsp3 | 41 | A41S | Gcc | Tcc | 10 | 10 | B.1.1.7 | 0.000009 |
ORF1ab/nsp3 | 41 | A41V | gCc | gTc | 10 | 10 | B.1.36.8 | 0.01 |
ORF1ab/nsp3 | 41 | A41V | gCc | gTc | 10 | 10 | C.37 | 0.001161 |
ORF1ab/nsp3 | 41 | A41A | gcC | gcT | 9 | 9 | AY.4.2.1 | 0.001341 |
ORF1ab/nsp3 | 41 | A41A | gcC | gcT | 9 | 9 | AY.4.3 | 0.007576 |
ORF1ab/nsp3 | 41 | A41V | gCc | gTc | 9 | 9 | AY.5 | 0.000186 |
ORF1ab/nsp3 | 41 | A41V | gCc | gTc | 9 | 9 | AY.61 | 0.000943 |
ORF1ab/nsp3 | 41 | A41V | gCc | gTc | 9 | 9 | B.1.1.316 | 0.008326 |
ORF1ab/nsp3 | 41 | A41A | gcC | gcT | 9 | 9 | B.1.1.372 | 0.006198 |
ORF1ab/nsp3 | 41 | A41A | gcC | gcT | 9 | 9 | B.1.241 | 0.007305 |
ORF1ab/nsp3 | 41 | A41A | gcC | gcT | 9 | 9 | B.1.415.1 | 0.068182 |
ORF1ab/nsp3 | 41 | A41S | Gcc | Tcc | 5 | 8 | 0.277778 | |
ORF1ab/nsp3 | 41 | A41S | GcC | TcA | 2 | 8 | 0.111111 | |
ORF1ab/nsp3 | 41 | A41S | GcC | TcT | 1 | 8 | 0.055556 | |
ORF1ab/nsp3 | 41 | A41V | gCc | gTc | 8 | 8 | AY.26 | 0.000226 |
ORF1ab/nsp3 | 41 | A41A | gcC | gcT | 7 | 8 | AY.4.2 | 0.000152 |
ORF1ab/nsp3 | 41 | A41A | gcC | gcA | 1 | 8 | AY.4.2 | 0.000022 |
ORF1ab/nsp3 | 41 | A41A | gcC | gcA | 6 | 8 | AY.54 | 0.000572 |
ORF1ab/nsp3 | 41 | A41A | gcC | gcT | 2 | 8 | AY.54 | 0.000191 |
ORF1ab/nsp3 | 41 | A41A | gcC | gcT | 8 | 8 | B.1.243 | 0.000557 |
ORF1ab/nsp3 | 41 | A41A | gcC | gcT | 8 | 8 | B.1.561 | 0.003176 |
ORF1ab/nsp3 | 41 | A41A | gcC | gcT | 8 | 8 | B.1.619.1 | 0.005131 |
ORF1ab/nsp3 | 41 | A41A | gcC | gcT | 8 | 8 | C.1 | 0.019139 |
ORF1ab/nsp3 | 41 | A41A | gcC | gcT | 8 | 8 | C.37 | 0.000929 |
ORF1ab/nsp3 | 41 | A41V | gCc | gTc | 8 | 8 | Q.8 | 0.001319 |
ORF1ab/nsp3 | 41 | A41T | Gcc | Acc | 7 | 7 | AY.4.2 | 0.000152 |
ORF1ab/nsp3 | 41 | A41A | gcC | gcT | 7 | 7 | AY.61 | 0.000733 |
ORF1ab/nsp3 | 41 | A41V | gCc | gTc | 7 | 7 | AY.9.1 | 0.000586 |
ORF1ab/nsp3 | 41 | A41V | gCc | gTc | 7 | 7 | B.1.177.81 | 0.001325 |
ORF1ab/nsp3 | 41 | A41A | gcC | gcT | 7 | 7 | B.1.177.9 | 0.009321 |
ORF1ab/nsp3 | 41 | A41A | gcC | gcT | 5 | 7 | B.1.221 | 0.000355 |
ORF1ab/nsp3 | 41 | A41A | gcC | gcA | 2 | 7 | B.1.221 | 0.000142 |
ORF1ab/nsp3 | 41 | A41V | gCc | gTc | 7 | 7 | B.1.596 | 0.00061 |
ORF1ab/nsp3 | 41 | A41V | gCc | gTc | 7 | 7 | B.1.617.1 | 0.000903 |
ORF1ab/nsp3 | 41 | A41T | Gcc | Acc | 7 | 7 | B.1.617.2 | 0.000026 |
ORF1ab/nsp3 | 41 | A41A | gcC | gcT | 7 | 7 | B.1.628 | 0.002467 |
ORF1ab/nsp3 | 41 | A41G | gCc | gGc | 3 | 6 | 0.166667 | |
ORF1ab/nsp3 | 41 | A41G | gCC | gGA | 2 | 6 | 0.111111 | |
ORF1ab/nsp3 | 41 | A41G | gCC | gGT | 1 | 6 | 0.055556 | |
ORF1ab/nsp3 | 41 | A41A | gcC | gcT | 6 | 6 | AY.106 | 0.002009 |
ORF1ab/nsp3 | 41 | A41D | gCc | gAc | 6 | 6 | AY.4 | 0.000009 |
ORF1ab/nsp3 | 41 | A41S | Gcc | Tcc | 6 | 6 | AY.4 | 0.000009 |
ORF1ab/nsp3 | 41 | A41A | gcC | gcT | 6 | 6 | AY.42 | 0.000241 |
ORF1ab/nsp3 | 41 | A41T | Gcc | Acc | 6 | 6 | AY.43 | 0.000027 |
ORF1ab/nsp3 | 41 | A41V | gCc | gTc | 6 | 6 | B.1.1.519 | 0.000238 |
ORF1ab/nsp3 | 41 | A41V | gCc | gTc | 6 | 6 | B.1.177.52 | 0.010545 |
ORF1ab/nsp3 | 41 | A41V | gCc | gTc | 6 | 6 | B.1.311 | 0.001647 |
ORF1ab/nsp3 | 41 | A41V | gCc | gTc | 6 | 6 | P.1.14 | 0.000287 |
ORF1ab/nsp3 | 41 | A41A | gcC | gcT | 6 | 6 | R.1 | 0.00054 |
ORF1ab/nsp3 | 41 | A41C | GCc | TGc | 4 | 5 | All | 0.000001 |
ORF1ab/nsp3 | 41 | A41P | Gcc | Ccc | 4 | 5 | All | 0.000001 |
ORF1ab/nsp3 | 41 | A41P | GcC | CcT | 1 | 5 | All | 0 |
ORF1ab/nsp3 | 41 | A41C | GCC | TGT | 1 | 5 | All | 0 |
ORF1ab/nsp3 | 41 | A41A | gcC | gcT | 5 | 5 | AY.100 | 0.00023 |
ORF1ab/nsp3 | 41 | A41V | gCc | gTc | 5 | 5 | AY.120 | 0.000186 |
ORF1ab/nsp3 | 41 | A41T | Gcc | Acc | 5 | 5 | AY.121 | 0.000677 |
ORF1ab/nsp3 | 41 | A41V | gCc | gTc | 5 | 5 | AY.20 | 0.000194 |
ORF1ab/nsp3 | 41 | A41A | gcC | gcA | 3 | 5 | AY.23 | 0.000209 |
ORF1ab/nsp3 | 41 | A41A | gcC | gcT | 2 | 5 | AY.23 | 0.000139 |
ORF1ab/nsp3 | 41 | A41A | gcC | gcT | 5 | 5 | AY.26 | 0.000142 |
ORF1ab/nsp3 | 41 | A41V | gCc | gTc | 5 | 5 | AY.29.1 | 0.001103 |
ORF1ab/nsp3 | 41 | A41A | gcC | gcT | 5 | 5 | AY.3.1 | 0.000426 |
ORF1ab/nsp3 | 41 | A41V | gCc | gTc | 5 | 5 | AY.45 | 0.000608 |
ORF1ab/nsp3 | 41 | A41V | gCc | gTc | 5 | 5 | AY.62 | 0.002179 |
ORF1ab/nsp3 | 41 | A41V | gCc | gTc | 5 | 5 | AY.84 | 0.002187 |
ORF1ab/nsp3 | 41 | A41A | gcC | gcT | 5 | 5 | AY.99.2 | 0.000461 |
ORF1ab/nsp3 | 41 | A41del | GCC | --- | 5 | 5 | B.1 | 0.000046 |
ORF1ab/nsp3 | 41 | A41V | gCc | gTc | 5 | 5 | B.1.1.214 | 0.000277 |
ORF1ab/nsp3 | 41 | A41del | GCC | --- | 5 | 5 | B.1.1.7 | 0.000004 |
ORF1ab/nsp3 | 41 | A41V | gCc | gTc | 5 | 5 | B.1.23 | 0.030303 |
ORF1ab/nsp3 | 41 | A41A | gcC | gcT | 5 | 5 | B.1.240.1 | 0.125 |
ORF1ab/nsp3 | 41 | A41V | gCc | gTc | 5 | 5 | B.1.36.16 | 0.007123 |
ORF1ab/nsp3 | 41 | A41A | gcC | gcT | 5 | 5 | B.1.617.1 | 0.000645 |
ORF1ab/nsp3 | 41 | A41A | gcC | gcT | 5 | 5 | C.26 | 0.036765 |
ORF1ab/nsp3 | 41 | A41A | gcC | gcT | 5 | 5 | Q.1 | 0.000632 |
ORF1ab/nsp3 | 41 | A41del | GCC | --- | 4 | 4 | 0.222222 | |
ORF1ab/nsp3 | 41 | A41D | gCc | gAc | 4 | 4 | 0.222222 | |
ORF1ab/nsp3 | 41 | A41A | gcC | gcA | 3 | 4 | 0.166667 | |
ORF1ab/nsp3 | 41 | A41C | GCc | TGc | 3 | 4 | 0.166667 | |
ORF1ab/nsp3 | 41 | A41A | gcC | gcT | 1 | 4 | 0.055556 | |
ORF1ab/nsp3 | 41 | A41C | GCC | TGT | 1 | 4 | 0.055556 | |
ORF1ab/nsp3 | 41 | A41V | gCc | gTc | 4 | 4 | A.2.5 | 0.001996 |
ORF1ab/nsp3 | 41 | A41E | gCC | gAA | 4 | 4 | All | 0.000001 |
ORF1ab/nsp3 | 41 | A41Y | GCc | TAc | 4 | 4 | All | 0.000001 |
ORF1ab/nsp3 | 41 | A41I | GCC | ATT | 2 | 4 | All | 0 |
ORF1ab/nsp3 | 41 | A41I | GCc | ATc | 2 | 4 | All | 0 |
ORF1ab/nsp3 | 41 | A41X | GCC | TAA | 2 | 4 | All | 0 |
ORF1ab/nsp3 | 41 | A41X | GCC | TGA | 2 | 4 | All | 0 |
ORF1ab/nsp3 | 41 | A41A | gcC | gcT | 4 | 4 | AY.114 | 0.000924 |
ORF1ab/nsp3 | 41 | A41V | gCc | gTc | 4 | 4 | AY.120.1 | 0.001284 |
ORF1ab/nsp3 | 41 | A41A | gcC | gcT | 3 | 4 | AY.13 | 0.000483 |
ORF1ab/nsp3 | 41 | A41A | gcC | gcA | 1 | 4 | AY.13 | 0.000161 |
ORF1ab/nsp3 | 41 | A41V | gCc | gTc | 4 | 4 | AY.3.1 | 0.000341 |
ORF1ab/nsp3 | 41 | A41V | gCc | gTc | 4 | 4 | AY.56 | 0.006421 |
ORF1ab/nsp3 | 41 | A41A | gcC | gcT | 4 | 4 | B.1.1.33 | 0.001684 |
ORF1ab/nsp3 | 41 | A41A | gcC | gcT | 4 | 4 | B.1.1.70 | 0.001364 |
ORF1ab/nsp3 | 41 | A41V | gCc | gTc | 4 | 4 | B.1.214.2 | 0.002398 |
ORF1ab/nsp3 | 41 | A41A | gcC | gcT | 4 | 4 | B.1.234 | 0.000528 |
ORF1ab/nsp3 | 41 | A41A | gcC | gcT | 3 | 4 | B.1.258 | 0.0002 |
ORF1ab/nsp3 | 41 | A41A | gcC | gcG | 1 | 4 | B.1.258 | 0.000067 |
ORF1ab/nsp3 | 41 | A41V | gCc | gTc | 4 | 4 | B.1.565 | 0.003241 |
ORF1ab/nsp3 | 41 | A41A | gcC | gcT | 4 | 4 | B.1.76 | 0.045455 |
ORF1ab/nsp3 | 41 | A41V | gCc | gTc | 4 | 4 | B.1.78 | 0.034188 |
ORF1ab/nsp3 | 41 | A41V | gCc | gTc | 4 | 4 | C.17 | 0.222222 |
ORF1ab/nsp3 | 41 | A41Y | GCc | TAc | 3 | 3 | 0.166667 | |
ORF1ab/nsp3 | 41 | A41X | GCC | TGA | 2 | 3 | 0.111111 | |
ORF1ab/nsp3 | 41 | A41X | GCC | TAA | 1 | 3 | 0.055556 | |
ORF1ab/nsp3 | 41 | A41V | gCc | gTc | 3 | 3 | AD.2 | 0.000657 |
ORF1ab/nsp3 | 41 | A41del1 | gCc | g-c | 2 | 3 | All | 0 |
ORF1ab/nsp3 | 41 | A41del1 | GCc | -Ac | 1 | 3 | All | 0 |
ORF1ab/nsp3 | 41 | A41V | gCc | gTc | 3 | 3 | AY.100 | 0.000138 |
ORF1ab/nsp3 | 41 | A41A | gcC | gcT | 3 | 3 | AY.101 | 0.001471 |
ORF1ab/nsp3 | 41 | A41T | Gcc | Acc | 3 | 3 | AY.118 | 0.000188 |
ORF1ab/nsp3 | 41 | A41S | Gcc | Tcc | 3 | 3 | AY.119 | 0.000106 |
ORF1ab/nsp3 | 41 | A41A | gcC | gcT | 3 | 3 | AY.121 | 0.000406 |
ORF1ab/nsp3 | 41 | A41A | gcC | gcT | 3 | 3 | AY.33 | 0.0002 |
ORF1ab/nsp3 | 41 | A41A | gcC | gcT | 3 | 3 | AY.4.1 | 0.002212 |
ORF1ab/nsp3 | 41 | A41V | gCc | gTc | 3 | 3 | AY.46 | 0.000312 |
ORF1ab/nsp3 | 41 | A41A | gcC | gcT | 3 | 3 | AY.46.6 | 0.000217 |
ORF1ab/nsp3 | 41 | A41A | gcC | gcT | 3 | 3 | AY.74 | 0.000347 |
ORF1ab/nsp3 | 41 | A41A | gcC | gcT | 3 | 3 | AY.75 | 0.000168 |
ORF1ab/nsp3 | 41 | A41A | gcC | gcA | 3 | 3 | AY.78 | 0.004622 |
ORF1ab/nsp3 | 41 | A41V | gCc | gTc | 3 | 3 | B | 0.000383 |
ORF1ab/nsp3 | 41 | A41A | gcC | gcT | 3 | 3 | B.1.1.28 | 0.000934 |
ORF1ab/nsp3 | 41 | A41V | gCc | gTc | 3 | 3 | B.1.1.294 | 0.003797 |
ORF1ab/nsp3 | 41 | A41V | gCc | gTc | 3 | 3 | B.1.1.303 | 0.008287 |
ORF1ab/nsp3 | 41 | A41del | GCC | --- | 3 | 3 | B.1.1.33 | 0.001263 |
ORF1ab/nsp3 | 41 | A41del | GCC | --- | 3 | 3 | B.1.1.348 | 0.002389 |
ORF1ab/nsp3 | 41 | A41A | gcC | gcT | 3 | 3 | B.1.1.486 | 0.004732 |
ORF1ab/nsp3 | 41 | A41A | gcC | gcT | 3 | 3 | B.1.177.35 | 0.002073 |
ORF1ab/nsp3 | 41 | A41A | gcC | gcT | 3 | 3 | B.1.177.46 | 0.002755 |
ORF1ab/nsp3 | 41 | A41V | gCc | gTc | 3 | 3 | B.1.177.60 | 0.000655 |
ORF1ab/nsp3 | 41 | A41A | gcC | gcT | 2 | 3 | B.1.177.60 | 0.000437 |
ORF1ab/nsp3 | 41 | A41A | gcC | gcA | 1 | 3 | B.1.177.60 | 0.000218 |
ORF1ab/nsp3 | 41 | A41S | Gcc | Tcc | 2 | 3 | B.1.221 | 0.000142 |
ORF1ab/nsp3 | 41 | A41S | GcC | TcA | 1 | 3 | B.1.221 | 0.000071 |
ORF1ab/nsp3 | 41 | A41V | gCc | gTc | 3 | 3 | B.1.234 | 0.000396 |
ORF1ab/nsp3 | 41 | A41A | gcC | gcT | 3 | 3 | B.1.306 | 0.017143 |
ORF1ab/nsp3 | 41 | A41A | gcC | gcT | 3 | 3 | B.1.311 | 0.000824 |
ORF1ab/nsp3 | 41 | A41A | gcC | gcT | 3 | 3 | B.1.36.29 | 0.001552 |
ORF1ab/nsp3 | 41 | A41V | gCc | gTc | 3 | 3 | B.1.36.29 | 0.001552 |
ORF1ab/nsp3 | 41 | A41V | gCc | gTc | 3 | 3 | B.1.427 | 0.000151 |
ORF1ab/nsp3 | 41 | A41A | gcC | gcT | 3 | 3 | B.1.438.1 | 0.000322 |
ORF1ab/nsp3 | 41 | A41S | Gcc | Tcc | 3 | 3 | B.1.568 | 0.003333 |
ORF1ab/nsp3 | 41 | A41S | Gcc | Tcc | 3 | 3 | B.1.570 | 0.008824 |
ORF1ab/nsp3 | 41 | A41D | gCc | gAc | 3 | 3 | B.1.617.2 | 0.000011 |
ORF1ab/nsp3 | 41 | A41A | gcC | gcT | 3 | 3 | B.1.617.3 | 0.008955 |
ORF1ab/nsp3 | 41 | A41V | gCc | gTc | 3 | 3 | C.39 | 0.056604 |
ORF1ab/nsp3 | 41 | A41A | gcC | gcT | 3 | 3 | M.3 | 0.230769 |
ORF1ab/nsp3 | 41 | A41V | gCc | gTc | 3 | 3 | P.1.16 | 0.001122 |
ORF1ab/nsp3 | 41 | A41A | gcC | gcT | 3 | 3 | P.2 | 0.00056 |
ORF1ab/nsp3 | 41 | A41E | gCC | gAA | 2 | 2 | 0.111111 | |
ORF1ab/nsp3 | 41 | A41I | GCC | ATT | 2 | 2 | 0.111111 | |
ORF1ab/nsp3 | 41 | A41V | gCC | gTT | 2 | 2 | 0.111111 | |
ORF1ab/nsp3 | 41 | A41T | GcC | AcA | 1 | 2 | 0.055556 | |
ORF1ab/nsp3 | 41 | A41T | Gcc | Acc | 1 | 2 | 0.055556 | |
ORF1ab/nsp3 | 41 | A41A | gcC | gcT | 2 | 2 | A.2.5 | 0.000998 |
ORF1ab/nsp3 | 41 | A41V | gCc | gTc | 2 | 2 | A.23.1 | 0.001408 |
ORF1ab/nsp3 | 41 | A41A | gcC | gcT | 2 | 2 | AE.8 | 0.000978 |
ORF1ab/nsp3 | 41 | A41D | gCc | gAc | 2 | 2 | AY.1 | 0.000791 |
ORF1ab/nsp3 | 41 | A41S | Gcc | Tcc | 2 | 2 | AY.103 | 0.000012 |
ORF1ab/nsp3 | 41 | A41A | gcC | gcT | 2 | 2 | AY.110 | 0.000225 |
ORF1ab/nsp3 | 41 | A41S | Gcc | Tcc | 2 | 2 | AY.113 | 0.000285 |
ORF1ab/nsp3 | 41 | A41V | gCc | gTc | 2 | 2 | AY.116 | 0.000574 |
ORF1ab/nsp3 | 41 | A41A | gcC | gcA | 1 | 2 | AY.117 | 0.000085 |
ORF1ab/nsp3 | 41 | A41A | gcC | gcT | 1 | 2 | AY.117 | 0.000085 |
ORF1ab/nsp3 | 41 | A41V | gCc | gTc | 2 | 2 | AY.119 | 0.000071 |
ORF1ab/nsp3 | 41 | A41A | gcC | gcT | 2 | 2 | AY.120.2.1 | 0.000997 |
ORF1ab/nsp3 | 41 | A41V | gCc | gTc | 2 | 2 | AY.14 | 0.000176 |
ORF1ab/nsp3 | 41 | A41V | gCc | gTc | 2 | 2 | AY.23 | 0.000139 |
ORF1ab/nsp3 | 41 | A41T | Gcc | Acc | 2 | 2 | AY.3 | 0.00002 |
ORF1ab/nsp3 | 41 | A41A | gcC | gcT | 1 | 2 | AY.36 | 0.000148 |
ORF1ab/nsp3 | 41 | A41A | gcC | gcA | 1 | 2 | AY.36 | 0.000148 |
ORF1ab/nsp3 | 41 | A41T | Gcc | Acc | 2 | 2 | AY.4 | 0.000003 |
ORF1ab/nsp3 | 41 | A41V | gCc | gTc | 2 | 2 | AY.4.4 | 0.000818 |
ORF1ab/nsp3 | 41 | A41A | gcC | gcT | 2 | 2 | AY.45 | 0.000243 |
ORF1ab/nsp3 | 41 | A41A | gcC | gcT | 2 | 2 | AY.46.2 | 0.001271 |
ORF1ab/nsp3 | 41 | A41V | gCc | gTc | 2 | 2 | AY.46.4 | 0.000329 |
ORF1ab/nsp3 | 41 | A41T | Gcc | Acc | 2 | 2 | AY.47 | 0.000062 |
ORF1ab/nsp3 | 41 | A41V | gCc | gTc | 2 | 2 | AY.5.4 | 0.000553 |
ORF1ab/nsp3 | 41 | A41V | gCc | gTc | 2 | 2 | AY.65 | 0.001066 |
ORF1ab/nsp3 | 41 | A41A | gcC | gcT | 2 | 2 | AY.85 | 0.000854 |
ORF1ab/nsp3 | 41 | A41A | gcC | gcT | 2 | 2 | AY.9.1 | 0.000167 |
ORF1ab/nsp3 | 41 | A41A | gcC | gcT | 2 | 2 | AY.9.2.1 | 0.003953 |
ORF1ab/nsp3 | 41 | A41A | gcC | gcT | 2 | 2 | AY.98.1 | 0.000097 |
ORF1ab/nsp3 | 41 | A41D | gCc | gAc | 2 | 2 | B.1 | 0.000018 |
ORF1ab/nsp3 | 41 | A41T | Gcc | Acc | 2 | 2 | B.1 | 0.000018 |
ORF1ab/nsp3 | 41 | A41D | gCc | gAc | 2 | 2 | B.1.1 | 0.000036 |
ORF1ab/nsp3 | 41 | A41T | Gcc | Acc | 2 | 2 | B.1.1 | 0.000036 |
ORF1ab/nsp3 | 41 | A41V | gCc | gTc | 2 | 2 | B.1.1.1 | 0.000653 |
ORF1ab/nsp3 | 41 | A41A | gcC | gcT | 2 | 2 | B.1.1.214 | 0.000111 |
ORF1ab/nsp3 | 41 | A41S | Gcc | Tcc | 2 | 2 | B.1.1.216 | 0.001781 |
ORF1ab/nsp3 | 41 | A41A | gcC | gcT | 2 | 2 | B.1.1.216 | 0.001781 |
ORF1ab/nsp3 | 41 | A41A | gcC | gcT | 2 | 2 | B.1.1.284 | 0.000215 |
ORF1ab/nsp3 | 41 | A41A | gcC | gcT | 2 | 2 | B.1.1.318 | 0.000604 |
ORF1ab/nsp3 | 41 | A41V | gCc | gTc | 2 | 2 | B.1.1.318 | 0.000604 |
ORF1ab/nsp3 | 41 | A41A | gcC | gcT | 2 | 2 | B.1.1.326 | 0.003521 |
ORF1ab/nsp3 | 41 | A41A | gcC | gcT | 2 | 2 | B.1.1.409 | 0.005666 |
ORF1ab/nsp3 | 41 | A41A | gcC | gcA | 2 | 2 | B.1.1.434 | 0.000697 |
ORF1ab/nsp3 | 41 | A41T | Gcc | Acc | 2 | 2 | B.1.146 | 0.008475 |
ORF1ab/nsp3 | 41 | A41A | gcC | gcT | 2 | 2 | B.1.177.21 | 0.000153 |
ORF1ab/nsp3 | 41 | A41A | gcC | gcT | 2 | 2 | B.1.177.56 | 0.001335 |
ORF1ab/nsp3 | 41 | A41V | gCc | gTc | 2 | 2 | B.1.177.65 | 0.001331 |
ORF1ab/nsp3 | 41 | A41A | gcC | gcA | 2 | 2 | B.1.177.7 | 0.00033 |
ORF1ab/nsp3 | 41 | A41S | Gcc | Tcc | 2 | 2 | B.1.2 | 0.000018 |
ORF1ab/nsp3 | 41 | A41P | GcC | CcT | 1 | 2 | B.1.2 | 0.000009 |
ORF1ab/nsp3 | 41 | A41P | Gcc | Ccc | 1 | 2 | B.1.2 | 0.000009 |
ORF1ab/nsp3 | 41 | A41A | gcC | gcT | 2 | 2 | B.1.22 | 0.002635 |
ORF1ab/nsp3 | 41 | A41E | gCC | gAA | 2 | 2 | B.1.221 | 0.000142 |
ORF1ab/nsp3 | 41 | A41D | gCc | gAc | 2 | 2 | B.1.221 | 0.000142 |
ORF1ab/nsp3 | 41 | A41V | gCc | gTc | 2 | 2 | B.1.258 | 0.000133 |
ORF1ab/nsp3 | 41 | A41A | gcC | gcT | 2 | 2 | B.1.36 | 0.000292 |
ORF1ab/nsp3 | 41 | A41A | gcC | gcT | 2 | 2 | B.1.36.19 | 0.018519 |
ORF1ab/nsp3 | 41 | A41A | gcC | gcT | 2 | 2 | B.1.369 | 0.00057 |
ORF1ab/nsp3 | 41 | A41A | gcC | gcT | 2 | 2 | B.1.375 | 0.001639 |
ORF1ab/nsp3 | 41 | A41V | gCc | gTc | 2 | 2 | B.1.423 | 0.020408 |
ORF1ab/nsp3 | 41 | A41del | GCC | --- | 2 | 2 | B.1.424 | 0.016129 |
ORF1ab/nsp3 | 41 | A41V | gCc | gTc | 2 | 2 | B.1.428 | 0.002041 |
ORF1ab/nsp3 | 41 | A41del | GCC | --- | 2 | 2 | B.1.429 | 0.000047 |
ORF1ab/nsp3 | 41 | A41P | Gcc | Ccc | 2 | 2 | B.1.429 | 0.000047 |
ORF1ab/nsp3 | 41 | A41A | gcC | gcT | 2 | 2 | B.1.466.2 | 0.000782 |
ORF1ab/nsp3 | 41 | A41V | gCc | gTc | 2 | 2 | B.1.466.2 | 0.000782 |
ORF1ab/nsp3 | 41 | A41S | Gcc | Tcc | 2 | 2 | B.1.617.2 | 0.000008 |
ORF1ab/nsp3 | 41 | A41A | gcC | gcT | 1 | 2 | B.1.623 | 0.000536 |
ORF1ab/nsp3 | 41 | A41A | gcC | gcA | 1 | 2 | B.1.623 | 0.000536 |
ORF1ab/nsp3 | 41 | A41V | gCc | gTc | 2 | 2 | B.1.81 | 0.042553 |
ORF1ab/nsp3 | 41 | A41A | gcC | gcT | 2 | 2 | B.3 | 0.001661 |
ORF1ab/nsp3 | 41 | A41A | gcC | gcT | 2 | 2 | B.4.8 | 0.142857 |
ORF1ab/nsp3 | 41 | A41V | gCc | gTc | 2 | 2 | C.4 | 0.02 |
ORF1ab/nsp3 | 41 | A41del | GCC | --- | 2 | 2 | N.6 | 0.014184 |
ORF1ab/nsp3 | 41 | A41del | GCC | --- | 2 | 2 | P.1 | 0.000032 |
ORF1ab/nsp3 | 41 | A41V | gCc | gTc | 2 | 2 | P.1.1 | 0.000635 |
ORF1ab/nsp3 | 41 | A41V | gCc | gTc | 2 | 2 | P.1.15 | 0.000465 |
ORF1ab/nsp3 | 41 | A41A | gcC | gcT | 2 | 2 | P.1.17 | 0.000324 |
ORF1ab/nsp3 | 41 | A41V | gCc | gTc | 2 | 2 | P.2 | 0.000373 |
ORF1ab/nsp3 | 41 | A41N | GCc | AAc | 1 | 1 | 0.055556 | |
ORF1ab/nsp3 | 41 | A41K | GCC | AAA | 1 | 1 | 0.055556 | |
ORF1ab/nsp3 | 41 | A41V | gCc | gTc | 1 | 1 | A | 0.000387 |
ORF1ab/nsp3 | 41 | A41K | GCC | AAA | 1 | 1 | All | 0 |
ORF1ab/nsp3 | 41 | A41N | GCc | AAc | 1 | 1 | All | 0 |
ORF1ab/nsp3 | 41 | A41V | gCc | gTc | 1 | 1 | AY.1 | 0.000396 |
ORF1ab/nsp3 | 41 | A41T | Gcc | Acc | 1 | 1 | AY.100 | 0.000046 |
ORF1ab/nsp3 | 41 | A41V | gCc | gTc | 1 | 1 | AY.101 | 0.00049 |
ORF1ab/nsp3 | 41 | A41T | Gcc | Acc | 1 | 1 | AY.102 | 0.000027 |
ORF1ab/nsp3 | 41 | A41D | gCc | gAc | 1 | 1 | AY.103 | 0.000006 |
ORF1ab/nsp3 | 41 | A41A | gcC | gcT | 1 | 1 | AY.107 | 0.000466 |
ORF1ab/nsp3 | 41 | A41V | gCc | gTc | 1 | 1 | AY.111 | 0.000183 |
ORF1ab/nsp3 | 41 | A41V | gCc | gTc | 1 | 1 | AY.113 | 0.000142 |
ORF1ab/nsp3 | 41 | A41T | Gcc | Acc | 1 | 1 | AY.116 | 0.000287 |
ORF1ab/nsp3 | 41 | A41A | gcC | gcT | 1 | 1 | AY.116 | 0.000287 |
ORF1ab/nsp3 | 41 | A41T | Gcc | Acc | 1 | 1 | AY.119 | 0.000035 |
ORF1ab/nsp3 | 41 | A41A | gcC | gcT | 1 | 1 | AY.12 | 0.000316 |
ORF1ab/nsp3 | 41 | A41A | gcC | gcT | 1 | 1 | AY.14 | 0.000088 |
ORF1ab/nsp3 | 41 | A41T | Gcc | Acc | 1 | 1 | AY.20 | 0.000039 |
ORF1ab/nsp3 | 41 | A41S | Gcc | Tcc | 1 | 1 | AY.23 | 0.00007 |
ORF1ab/nsp3 | 41 | A41V | gCc | gTc | 1 | 1 | AY.32 | 0.000532 |
ORF1ab/nsp3 | 41 | A41A | gcC | gcT | 1 | 1 | AY.34.1 | 0.00051 |
ORF1ab/nsp3 | 41 | A41V | gCc | gTc | 1 | 1 | AY.36 | 0.000148 |
ORF1ab/nsp3 | 41 | A41V | gCc | gTc | 1 | 1 | AY.38 | 0.000499 |
ORF1ab/nsp3 | 41 | A41T | Gcc | Acc | 1 | 1 | AY.39 | 0.000025 |
ORF1ab/nsp3 | 41 | A41A | gcC | gcT | 1 | 1 | AY.4.5 | 0.000107 |
ORF1ab/nsp3 | 41 | A41V | gCc | gTc | 1 | 1 | AY.42 | 0.00004 |
ORF1ab/nsp3 | 41 | A41D | gCc | gAc | 1 | 1 | AY.44 | 0.000006 |
ORF1ab/nsp3 | 41 | A41del1 | GCc | -Ac | 1 | 1 | AY.44 | 0.000006 |
ORF1ab/nsp3 | 41 | A41T | Gcc | Acc | 1 | 1 | AY.44 | 0.000006 |
ORF1ab/nsp3 | 41 | A41A | gcC | gcT | 1 | 1 | AY.46 | 0.000104 |
ORF1ab/nsp3 | 41 | A41A | gcC | gcT | 1 | 1 | AY.46.1 | 0.001027 |
ORF1ab/nsp3 | 41 | A41V | gCc | gTc | 1 | 1 | AY.46.2 | 0.000635 |
ORF1ab/nsp3 | 41 | A41A | gcC | gcT | 1 | 1 | AY.46.3 | 0.000934 |
ORF1ab/nsp3 | 41 | A41A | gcC | gcT | 1 | 1 | AY.46.4 | 0.000165 |
ORF1ab/nsp3 | 41 | A41A | gcC | gcT | 1 | 1 | AY.46.5 | 0.000198 |
ORF1ab/nsp3 | 41 | A41A | gcC | gcT | 1 | 1 | AY.47 | 0.000031 |
ORF1ab/nsp3 | 41 | A41A | gcC | gcT | 1 | 1 | AY.48 | 0.000465 |
ORF1ab/nsp3 | 41 | A41V | gCc | gTc | 1 | 1 | AY.48 | 0.000465 |
ORF1ab/nsp3 | 41 | A41A | gcC | gcT | 1 | 1 | AY.5.3 | 0.000337 |
ORF1ab/nsp3 | 41 | A41V | gCc | gTc | 1 | 1 | AY.52 | 0.000814 |
ORF1ab/nsp3 | 41 | A41S | Gcc | Tcc | 1 | 1 | AY.54 | 0.000095 |
ORF1ab/nsp3 | 41 | A41V | gCc | gTc | 1 | 1 | AY.54 | 0.000095 |
ORF1ab/nsp3 | 41 | A41V | gCc | gTc | 1 | 1 | AY.55 | 0.000917 |
ORF1ab/nsp3 | 41 | A41A | gcC | gcT | 1 | 1 | AY.56 | 0.001605 |
ORF1ab/nsp3 | 41 | A41V | gCc | gTc | 1 | 1 | AY.59 | 0.00053 |
ORF1ab/nsp3 | 41 | A41del | GCC | --- | 1 | 1 | AY.6 | 0.000041 |
ORF1ab/nsp3 | 41 | A41A | gcC | gcT | 1 | 1 | AY.6 | 0.000041 |
ORF1ab/nsp3 | 41 | A41V | gCc | gTc | 1 | 1 | AY.67 | 0.000464 |
ORF1ab/nsp3 | 41 | A41C | GCc | TGc | 1 | 1 | AY.67 | 0.000464 |
ORF1ab/nsp3 | 41 | A41A | gcC | gcT | 1 | 1 | AY.67 | 0.000464 |
ORF1ab/nsp3 | 41 | A41A | gcC | gcT | 1 | 1 | AY.69 | 0.000187 |
ORF1ab/nsp3 | 41 | A41A | gcC | gcT | 1 | 1 | AY.7.1 | 0.000113 |
ORF1ab/nsp3 | 41 | A41V | gCc | gTc | 1 | 1 | AY.7.1 | 0.000113 |
ORF1ab/nsp3 | 41 | A41A | gcC | gcT | 1 | 1 | AY.70 | 0.000209 |
ORF1ab/nsp3 | 41 | A41T | Gcc | Acc | 1 | 1 | AY.75 | 0.000056 |
ORF1ab/nsp3 | 41 | A41V | gCc | gTc | 1 | 1 | AY.75.1 | 0.00018 |
ORF1ab/nsp3 | 41 | A41T | Gcc | Acc | 1 | 1 | AY.79 | 0.001211 |
ORF1ab/nsp3 | 41 | A41A | gcC | gcT | 1 | 1 | AY.79 | 0.001211 |
ORF1ab/nsp3 | 41 | A41T | Gcc | Acc | 1 | 1 | AY.84 | 0.000437 |
ORF1ab/nsp3 | 41 | A41V | gCc | gTc | 1 | 1 | AY.85 | 0.000427 |
ORF1ab/nsp3 | 41 | A41A | gcC | gcT | 1 | 1 | AY.9.2 | 0.000037 |
ORF1ab/nsp3 | 41 | A41del | GCC | --- | 1 | 1 | AY.9.2 | 0.000037 |
ORF1ab/nsp3 | 41 | A41V | gCc | gTc | 1 | 1 | AY.9.2.1 | 0.001976 |
ORF1ab/nsp3 | 41 | A41A | gcC | gcT | 1 | 1 | AY.92 | 0.000287 |
ORF1ab/nsp3 | 41 | A41V | gCc | gTc | 1 | 1 | AY.98 | 0.000079 |
ORF1ab/nsp3 | 41 | A41A | gcC | gcT | 1 | 1 | AY.98 | 0.000079 |
ORF1ab/nsp3 | 41 | A41T | Gcc | Acc | 1 | 1 | AY.98 | 0.000079 |
ORF1ab/nsp3 | 41 | A41S | Gcc | Tcc | 1 | 1 | AY.98 | 0.000079 |
ORF1ab/nsp3 | 41 | A41V | gCc | gTc | 1 | 1 | AY.98.1 | 0.000048 |
ORF1ab/nsp3 | 41 | A41A | gcC | gcT | 1 | 1 | AY.99.1 | 0.001553 |
ORF1ab/nsp3 | 41 | A41V | gCc | gTc | 1 | 1 | AY.99.2 | 0.000092 |
ORF1ab/nsp3 | 41 | A41A | gcC | gcT | 1 | 1 | AZ.2 | 0.000821 |
ORF1ab/nsp3 | 41 | A41A | gcC | gcT | 1 | 1 | B | 0.000128 |
ORF1ab/nsp3 | 41 | A41G | gCc | gGc | 1 | 1 | B.1 | 0.000009 |
ORF1ab/nsp3 | 41 | A41P | Gcc | Ccc | 1 | 1 | B.1 | 0.000009 |
ORF1ab/nsp3 | 41 | A41del | GCC | --- | 1 | 1 | B.1.1 | 0.000018 |
ORF1ab/nsp3 | 41 | A41A | gcC | gcT | 1 | 1 | B.1.1.10 | 0.001115 |
ORF1ab/nsp3 | 41 | A41A | gcC | gcT | 1 | 1 | B.1.1.142 | 0.017544 |
ORF1ab/nsp3 | 41 | A41A | gcC | gcT | 1 | 1 | B.1.1.157 | 0.000913 |
ORF1ab/nsp3 | 41 | A41A | gcC | gcT | 1 | 1 | B.1.1.165 | 0.015385 |
ORF1ab/nsp3 | 41 | A41A | gcC | gcT | 1 | 1 | B.1.1.172 | 0.018182 |
ORF1ab/nsp3 | 41 | A41A | gcC | gcT | 1 | 1 | B.1.1.174 | 0.003378 |
ORF1ab/nsp3 | 41 | A41V | gCc | gTc | 1 | 1 | B.1.1.207 | 0.001182 |
ORF1ab/nsp3 | 41 | A41V | gCc | gTc | 1 | 1 | B.1.1.216 | 0.00089 |
ORF1ab/nsp3 | 41 | A41A | gcC | gcT | 1 | 1 | B.1.1.222 | 0.000204 |
ORF1ab/nsp3 | 41 | A41V | gCc | gTc | 1 | 1 | B.1.1.222 | 0.000204 |
ORF1ab/nsp3 | 41 | A41V | gCc | gTc | 1 | 1 | B.1.1.243 | 0.004082 |
ORF1ab/nsp3 | 41 | A41A | gcC | gcT | 1 | 1 | B.1.1.25 | 0.000569 |
ORF1ab/nsp3 | 41 | A41V | gCc | gTc | 1 | 1 | B.1.1.25 | 0.000569 |
ORF1ab/nsp3 | 41 | A41A | gcC | gcT | 1 | 1 | B.1.1.27 | 0.00565 |
ORF1ab/nsp3 | 41 | A41V | gCc | gTc | 1 | 1 | B.1.1.28 | 0.000311 |
ORF1ab/nsp3 | 41 | A41A | gcC | gcT | 1 | 1 | B.1.1.297 | 0.002237 |
ORF1ab/nsp3 | 41 | A41D | gCc | gAc | 1 | 1 | B.1.1.3 | 0.008696 |
ORF1ab/nsp3 | 41 | A41T | Gcc | Acc | 1 | 1 | B.1.1.306 | 0.000438 |
ORF1ab/nsp3 | 41 | A41A | gcC | gcT | 1 | 1 | B.1.1.306 | 0.000438 |
ORF1ab/nsp3 | 41 | A41V | gCc | gTc | 1 | 1 | B.1.1.311 | 0.000358 |
ORF1ab/nsp3 | 41 | A41A | gcC | gcT | 1 | 1 | B.1.1.316 | 0.000925 |
ORF1ab/nsp3 | 41 | A41V | gCc | gTc | 1 | 1 | B.1.1.33 | 0.000421 |
ORF1ab/nsp3 | 41 | A41A | gcC | gcT | 1 | 1 | B.1.1.369 | 0.000446 |
ORF1ab/nsp3 | 41 | A41V | gCc | gTc | 1 | 1 | B.1.1.372 | 0.000689 |
ORF1ab/nsp3 | 41 | A41A | gcC | gcT | 1 | 1 | B.1.1.412 | 0.007634 |
ORF1ab/nsp3 | 41 | A41del | GCC | --- | 1 | 1 | B.1.1.416 | 0.000905 |
ORF1ab/nsp3 | 41 | A41V | gCc | gTc | 1 | 1 | B.1.1.420 | 0.001006 |
ORF1ab/nsp3 | 41 | A41V | gCc | gTc | 1 | 1 | B.1.1.425 | 0.045455 |
ORF1ab/nsp3 | 41 | A41A | gcC | gcT | 1 | 1 | B.1.1.432 | 0.001266 |
ORF1ab/nsp3 | 41 | A41V | gCc | gTc | 1 | 1 | B.1.1.44 | 0.00241 |
ORF1ab/nsp3 | 41 | A41V | gCc | gTc | 1 | 1 | B.1.1.485 | 0.016667 |
ORF1ab/nsp3 | 41 | A41A | gcC | gcT | 1 | 1 | B.1.1.50 | 0.000679 |
ORF1ab/nsp3 | 41 | A41I | GCc | ATc | 1 | 1 | B.1.1.50 | 0.000679 |
ORF1ab/nsp3 | 41 | A41A | gcC | gcT | 1 | 1 | B.1.1.526 | 0.003546 |
ORF1ab/nsp3 | 41 | A41A | gcC | gcT | 1 | 1 | B.1.1.63 | 0.000386 |
ORF1ab/nsp3 | 41 | A41V | gCc | gTc | 1 | 1 | B.1.1.63 | 0.000386 |
ORF1ab/nsp3 | 41 | A41D | gCc | gAc | 1 | 1 | B.1.1.7 | 0.000001 |
ORF1ab/nsp3 | 41 | A41I | GCc | ATc | 1 | 1 | B.1.1.7 | 0.000001 |
ORF1ab/nsp3 | 41 | A41del | GCC | --- | 1 | 1 | B.1.1.70 | 0.000341 |
ORF1ab/nsp3 | 41 | A41A | gcC | gcT | 1 | 1 | B.1.1.83 | 0.00271 |
ORF1ab/nsp3 | 41 | A41A | gcC | gcT | 1 | 1 | B.1.1.99 | 0.02381 |
ORF1ab/nsp3 | 41 | A41A | gcC | gcT | 1 | 1 | B.1.146 | 0.004237 |
ORF1ab/nsp3 | 41 | A41A | gcC | gcT | 1 | 1 | B.1.157 | 0.002985 |
ORF1ab/nsp3 | 41 | A41A | gcC | gcT | 1 | 1 | B.1.160.16 | 0.000929 |
ORF1ab/nsp3 | 41 | A41S | Gcc | Tcc | 1 | 1 | B.1.177 | 0.000013 |
ORF1ab/nsp3 | 41 | A41V | gCc | gTc | 1 | 1 | B.1.177.10 | 0.000878 |
ORF1ab/nsp3 | 41 | A41del | GCC | --- | 1 | 1 | B.1.177.51 | 0.004566 |
ORF1ab/nsp3 | 41 | A41A | gcC | gcT | 1 | 1 | B.1.177.57 | 0.000281 |
ORF1ab/nsp3 | 41 | A41V | gCc | gTc | 1 | 1 | B.1.177.7 | 0.000165 |
ORF1ab/nsp3 | 41 | A41del1 | gCc | g-c | 1 | 1 | B.1.177.73 | 0.000566 |
ORF1ab/nsp3 | 41 | A41A | gcC | gcT | 1 | 1 | B.1.177.77 | 0.000726 |
ORF1ab/nsp3 | 41 | A41V | gCc | gTc | 1 | 1 | B.1.177.8 | 0.000752 |
ORF1ab/nsp3 | 41 | A41A | gcC | gcT | 1 | 1 | B.1.177.80 | 0.001912 |
ORF1ab/nsp3 | 41 | A41A | gcC | gcT | 1 | 1 | B.1.177.88 | 0.012346 |
ORF1ab/nsp3 | 41 | A41X | GCC | TAA | 1 | 1 | B.1.221 | 0.000071 |
ORF1ab/nsp3 | 41 | A41Y | GCc | TAc | 1 | 1 | B.1.221 | 0.000071 |
ORF1ab/nsp3 | 41 | A41V | gCc | gTc | 1 | 1 | B.1.222 | 0.001692 |
ORF1ab/nsp3 | 41 | A41A | gcC | gcT | 1 | 1 | B.1.238 | 0.014925 |
ORF1ab/nsp3 | 41 | A41S | Gcc | Tcc | 1 | 1 | B.1.258 | 0.000067 |
ORF1ab/nsp3 | 41 | A41A | gcC | gcT | 1 | 1 | B.1.258.17 | 0.000104 |
ORF1ab/nsp3 | 41 | A41V | gCc | gTc | 1 | 1 | B.1.258.17 | 0.000104 |
ORF1ab/nsp3 | 41 | A41V | gCc | gTc | 1 | 1 | B.1.260 | 0.003344 |
ORF1ab/nsp3 | 41 | A41A | gcC | gcT | 1 | 1 | B.1.265 | 0.001271 |
ORF1ab/nsp3 | 41 | A41V | gCc | gTc | 1 | 1 | B.1.279 | 0.000514 |
ORF1ab/nsp3 | 41 | A41V | gCc | gTc | 1 | 1 | B.1.298 | 0.002114 |
ORF1ab/nsp3 | 41 | A41A | gcC | gcT | 1 | 1 | B.1.346 | 0.001311 |
ORF1ab/nsp3 | 41 | A41A | gcC | gcT | 1 | 1 | B.1.351.2 | 0.000303 |
ORF1ab/nsp3 | 41 | A41A | gcC | gcT | 1 | 1 | B.1.356 | 0.001727 |
ORF1ab/nsp3 | 41 | A41V | gCc | gTc | 1 | 1 | B.1.36 | 0.000146 |
ORF1ab/nsp3 | 41 | A41A | gcC | gcT | 1 | 1 | B.1.36.10 | 0.004785 |
ORF1ab/nsp3 | 41 | A41A | gcC | gcT | 1 | 1 | B.1.36.18 | 0.00042 |
ORF1ab/nsp3 | 41 | A41V | gCc | gTc | 1 | 1 | B.1.36.19 | 0.009259 |
ORF1ab/nsp3 | 41 | A41V | gCc | gTc | 1 | 1 | B.1.36.22 | 0.001208 |
ORF1ab/nsp3 | 41 | A41V | gCc | gTc | 1 | 1 | B.1.36.24 | 0.006173 |
ORF1ab/nsp3 | 41 | A41A | gcC | gcT | 1 | 1 | B.1.36.27 | 0.000763 |
ORF1ab/nsp3 | 41 | A41del1 | gCc | g-c | 1 | 1 | B.1.36.29 | 0.000517 |
ORF1ab/nsp3 | 41 | A41A | gcC | gcT | 1 | 1 | B.1.36.36 | 0.000602 |
ORF1ab/nsp3 | 41 | A41V | gCc | gTc | 1 | 1 | B.1.36.38 | 0.001642 |
ORF1ab/nsp3 | 41 | A41A | gcC | gcT | 1 | 1 | B.1.361 | 0.001289 |
ORF1ab/nsp3 | 41 | A41V | gCc | gTc | 1 | 1 | B.1.369 | 0.000285 |
ORF1ab/nsp3 | 41 | A41V | gCc | gTc | 1 | 1 | B.1.375 | 0.00082 |
ORF1ab/nsp3 | 41 | A41V | gCc | gTc | 1 | 1 | B.1.398 | 0.002976 |
ORF1ab/nsp3 | 41 | A41A | gcC | gcT | 1 | 1 | B.1.411 | 0.003704 |
ORF1ab/nsp3 | 41 | A41A | gcC | gcT | 1 | 1 | B.1.436 | 0.001029 |
ORF1ab/nsp3 | 41 | A41A | gcC | gcA | 1 | 1 | B.1.439 | 0.005917 |
ORF1ab/nsp3 | 41 | A41V | gCc | gTc | 1 | 1 | B.1.459 | 0.004082 |
ORF1ab/nsp3 | 41 | A41V | gCc | gTc | 1 | 1 | B.1.497 | 0.000315 |
ORF1ab/nsp3 | 41 | A41A | gcC | gcT | 1 | 1 | B.1.497 | 0.000315 |
ORF1ab/nsp3 | 41 | A41A | gcC | gcT | 1 | 1 | B.1.499 | 0.00105 |
ORF1ab/nsp3 | 41 | A41A | gcC | gcT | 1 | 1 | B.1.509 | 0.000866 |
ORF1ab/nsp3 | 41 | A41A | gcC | gcT | 1 | 1 | B.1.516 | 0.001957 |
ORF1ab/nsp3 | 41 | A41V | gCc | gTc | 1 | 1 | B.1.517 | 0.000427 |
ORF1ab/nsp3 | 41 | A41A | gcC | gcT | 1 | 1 | B.1.517 | 0.000427 |
ORF1ab/nsp3 | 41 | A41A | gcC | gcT | 1 | 1 | B.1.538 | 0.008065 |
ORF1ab/nsp3 | 41 | A41del | GCC | --- | 1 | 1 | B.1.561 | 0.000397 |
ORF1ab/nsp3 | 41 | A41V | gCc | gTc | 1 | 1 | B.1.561 | 0.000397 |
ORF1ab/nsp3 | 41 | A41V | gCc | gTc | 1 | 1 | B.1.567 | 0.003333 |
ORF1ab/nsp3 | 41 | A41V | gCc | gTc | 1 | 1 | B.1.576 | 0.000907 |
ORF1ab/nsp3 | 41 | A41A | gcC | gcT | 1 | 1 | B.1.591 | 0.010638 |
ORF1ab/nsp3 | 41 | A41T | Gcc | Acc | 1 | 1 | B.1.596 | 0.000087 |
ORF1ab/nsp3 | 41 | A41V | gCc | gTc | 1 | 1 | B.1.597 | 0.00463 |
ORF1ab/nsp3 | 41 | A41A | gcC | gcT | 1 | 1 | B.1.601 | 0.030303 |
ORF1ab/nsp3 | 41 | A41T | Gcc | Acc | 1 | 1 | B.1.621 | 0.000089 |
ORF1ab/nsp3 | 41 | A41A | gcC | gcT | 1 | 1 | B.40 | 0.000364 |
ORF1ab/nsp3 | 41 | A41del | GCC | --- | 1 | 1 | B.57 | 0.015152 |
ORF1ab/nsp3 | 41 | A41A | gcC | gcT | 1 | 1 | B.58 | 0.010204 |
ORF1ab/nsp3 | 41 | A41V | gCc | gTc | 1 | 1 | B.6.6 | 0.000889 |
ORF1ab/nsp3 | 41 | A41A | gcC | gcT | 1 | 1 | C.14 | 0.004329 |
ORF1ab/nsp3 | 41 | A41A | gcC | gcT | 1 | 1 | C.16 | 0.00106 |
ORF1ab/nsp3 | 41 | A41V | gCc | gTc | 1 | 1 | C.16 | 0.00106 |
ORF1ab/nsp3 | 41 | A41A | gcC | gcA | 1 | 1 | C.18 | 0.002591 |
ORF1ab/nsp3 | 41 | A41S | Gcc | Tcc | 1 | 1 | C.26 | 0.007353 |
ORF1ab/nsp3 | 41 | A41A | gcC | gcT | 1 | 1 | C.27 | 0.018519 |
ORF1ab/nsp3 | 41 | A41V | gCc | gTc | 1 | 1 | D.2 | 0.000075 |
ORF1ab/nsp3 | 41 | A41A | gcC | gcT | 1 | 1 | K.3 | 0.006173 |
ORF1ab/nsp3 | 41 | A41V | gCc | gTc | 1 | 1 | N.3 | 0.005814 |
ORF1ab/nsp3 | 41 | A41A | gcC | gcT | 1 | 1 | N.5 | 0.001767 |
ORF1ab/nsp3 | 41 | A41T | Gcc | Acc | 1 | 1 | P.1.1 | 0.000318 |
ORF1ab/nsp3 | 41 | A41V | gCc | gTc | 1 | 1 | P.1.12 | 0.000484 |
ORF1ab/nsp3 | 41 | A41A | gcC | gcT | 1 | 1 | P.1.15 | 0.000232 |
ORF1ab/nsp3 | 41 | A41A | gcC | gcA | 1 | 1 | P.1.7 | 0.000319 |
ORF1ab/nsp3 | 41 | A41A | gcC | gcT | 1 | 1 | P.3 | 0.001595 |
ORF1ab/nsp3 | 41 | A41A | gcC | gcT | 1 | 1 | P.7 | 0.004367 |
ORF1ab/nsp3 | 41 | A41V | gCc | gTc | 1 | 1 | Q.4 | 0.000455 |
ORF1ab/nsp3 | 41 | A41A | gcC | gcT | 1 | 1 | Q.8 | 0.000165 |
ORF1ab/nsp3 | 41 | A41A | gcC | gcT | 1 | 1 | W.4 | 0.001351 |
ORF1ab/nsp3 | 41 | A41A | gcC | gcT | 1 | 1 | Z.1 | 0.00289 |
CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk
|