CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF1ab/nsp3 : CodonNum = 402

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF1ab/nsp3402P402TP1220TnonsynCctAct480348020.9997923923-3925
ORF1ab/nsp3402P402TP1220TnonsynCcTAcC480310.0002082033923-3925
ORF1ab/nsp3402P402LP1220LnonsyncCtcTt411741160.9997573923-3925
ORF1ab/nsp3402P402LP1220LnonsyncCTcTC411710.0002428953923-3925
ORF1ab/nsp3402P402SP1220SnonsynCctTct3910391013923-3925
ORF1ab/nsp3402P402HP1220HnonsyncCtcAt1612161213923-3925
ORF1ab/nsp3402P402RP1220RnonsyncCtcGt78478413923-3925
ORF1ab/nsp3402P402PP1220PsynccTccC194940.4845363923-3925
ORF1ab/nsp3402P402PP1220PsynccTccG194520.2680413923-3925
ORF1ab/nsp3402P402PP1220PsynccTccA194480.2474233923-3925
ORF1ab/nsp3402P402delP1220deldelCCT---10910913923-3925
ORF1ab/nsp3402P402AP1220AnonsynCctGct980.8888893923-3925
ORF1ab/nsp3402P402AP1220AnonsynCcTGcC910.1111113923-3925
ORF1ab/nsp3402P402del1P1220del1delccTcc-2213923-3925
ORF1ab/nsp3402P402VP1220VnonsynCCtGTt210.53923-3925
ORF1ab/nsp3402P402VP1220VnonsynCCTGTC210.53923-3925
ORF1ab/nsp3402P402IP1220InonsynCCtATt210.53923-3925
ORF1ab/nsp3402P402IP1220InonsynCCTATC210.53923-3925
ORF1ab/nsp3402P402KP1220KnonsynCCTAAG1113923-3925

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF1ab/nsp3402P402TCctAct48024803All0.000918
ORF1ab/nsp3402P402TCcTAcC14803All0
ORF1ab/nsp3402P402TCctAct46494649AY.290.073332
ORF1ab/nsp3402P402LcCtcTt41164117All0.000787
ORF1ab/nsp3402P402LcCTcTC14117All0
ORF1ab/nsp3402P402SCctTct39103910All0.000748
ORF1ab/nsp3402P402HcCtcAt16121612All0.000308
ORF1ab/nsp3402P402LcCtcTt13261326AY.40.002064
ORF1ab/nsp3402P402LcCtcTt12221222B.1.1.70.001094
ORF1ab/nsp3402P402HcCtcAt10481048AY.750.058711
ORF1ab/nsp3402P402RcCtcGt784784All0.00015
ORF1ab/nsp3402P402RcCtcGt767767AY.40.001194
ORF1ab/nsp3402P402SCctTct625625AY.40.000973
ORF1ab/nsp3402P402SCctTct593593AY.1030.003682
ORF1ab/nsp3402P402SCctTct453453B.1.1.70.000406
ORF1ab/nsp3402P402SCctTct293293AY.440.001783
ORF1ab/nsp3402P402HcCtcAt281281B.1.617.20.001058
ORF1ab/nsp3402P402SCctTct280280AY.1190.009886
ORF1ab/nsp3402P402SCctTct243243B.1.1600.007579
ORF1ab/nsp3402P402PccTccC94194All0.000018
ORF1ab/nsp3402P402PccTccG52194All0.00001
ORF1ab/nsp3402P402PccTccA48194All0.000009
ORF1ab/nsp3402P402HcCtcAt141141B.1.5440.849398
ORF1ab/nsp3402P402LcCtcTt122122B.1.3510.003627
ORF1ab/nsp3402P402LcCtcTt112112B.1.4270.005656
ORF1ab/nsp3402P402delCCT---109109All0.000021
ORF1ab/nsp3402P402SCctTct107107B.1.617.20.000403
ORF1ab/nsp3402P402LcCtcTt106106B.1.20.000933
ORF1ab/nsp3402P402SCctTct104104AY.50.002148
ORF1ab/nsp3402P402SCctTct9898AY.430.000434
ORF1ab/nsp3402P402SCctTct9797B.1.20.000854
ORF1ab/nsp3402P402LcCtcTt9696B.1.617.20.000361
ORF1ab/nsp3402P402LcCtcTt8787B.1.1770.001146
ORF1ab/nsp3402P402LcCtcTt8686AY.440.000523
ORF1ab/nsp3402P402LcCtcTt7979AY.1030.000491
ORF1ab/nsp3402P402SCctTct7676P.10.001197
ORF1ab/nsp3402P402LcCtcTt7272B.1.160.160.066914
ORF1ab/nsp3402P402SCctTct5858AY.250.000349
ORF1ab/nsp3402P402SCctTct5858AZ.10.050304
ORF1ab/nsp3402P402SCctTct5353B.1.36.80.053
ORF1ab/nsp3402P402LcCtcTt5252AY.60.002139
ORF1ab/nsp3402P402SCctTct4747B.10.00043
ORF1ab/nsp3402P402PccTccA2545B.1.1.70.000022
ORF1ab/nsp3402P402PccTccC1445B.1.1.70.000013
ORF1ab/nsp3402P402PccTccG645B.1.1.70.000005
ORF1ab/nsp3402P402LcCtcTt4444AY.4.20.000954
ORF1ab/nsp3402P402SCctTct4242AY.30.000418
ORF1ab/nsp3402P402LcCtcTt4141AY.430.000182
ORF1ab/nsp3402P402LcCtcTt4141B.1.10.000744
ORF1ab/nsp3402P402TCctAct3939B.1.10.000707
ORF1ab/nsp3402P402TCctAct3737AY.29.10.008159
ORF1ab/nsp3402P402LcCtcTt3535AY.940.015494
ORF1ab/nsp3402P402LcCtcTt3030Q.10.00379
ORF1ab/nsp3402P402LcCtcTt2727AY.30.000269
ORF1ab/nsp3402P402SCctTct2727B.1.4270.001363
ORF1ab/nsp3402P402LcCtcTt2626B.10.000238
ORF1ab/nsp3402P402SCctTct2626B.1.10.000472
ORF1ab/nsp3402P402SCctTct2525AY.1020.000663
ORF1ab/nsp3402P402LcCtcTt2424P.10.000378
ORF1ab/nsp3402P402SCctTct2323AY.680.006296
ORF1ab/nsp3402P402LcCtcTt2323B.1.438.10.002467
ORF1ab/nsp3402P402SCctTct2222B.1.1.5190.000874
ORF1ab/nsp3402P402SCctTct2222B.1.1770.00029
ORF1ab/nsp3402P402LcCtcTt2121B.1.5960.00183
ORF1ab/nsp3402P402LcCtcTt2020AY.250.00012
ORF1ab/nsp3402P402HcCtcAt1919B.1.20.000167
ORF1ab/nsp3402P402SCctTct1818AY.390.000445
ORF1ab/nsp3402P402SCctTct1818AY.4.20.00039
ORF1ab/nsp3402P402SCctTct1818B.1.4290.000424
ORF1ab/nsp3402P402SCctTct1818B.1.6090.008629
ORF1ab/nsp3402P402PccTccG1017AY.40.000016
ORF1ab/nsp3402P402PccTccA617AY.40.000009
ORF1ab/nsp3402P402PccTccC117AY.40.000002
ORF1ab/nsp3402P402TCctAct1717B.1.617.20.000064
ORF1ab/nsp3402P402delCCT---1616B.10.000147
ORF1ab/nsp3402P402LcCtcTt1515B.1.5820.00736
ORF1ab/nsp3402P402LcCtcTt1414B.1.1.4340.00488
ORF1ab/nsp3402P402HcCtcAt1414B.1.1.70.000013
ORF1ab/nsp3402P402SCctTct1414B.1.177.70.002308
ORF1ab/nsp3402P402SCctTct1313AD.20.002847
ORF1ab/nsp3402P402LcCtcTt1313B.1.1600.000405
ORF1ab/nsp3402P402SCctTct1313B.1.2340.001715
ORF1ab/nsp3402P402SCctTct1313Q.30.001885
ORF1ab/nsp3402P402LcCtcTt1212AY.200.000466
ORF1ab/nsp3402P402LcCtcTt1111AY.390.000272
ORF1ab/nsp3402P402LcCtcTt1111AY.410.003233
ORF1ab/nsp3402P402LcCtcTt1111AY.460.001145
ORF1ab/nsp3402P402LcCtcTt1111B.1.2580.000732
ORF1ab/nsp3402P402LcCtcTt1010AY.630.003868
ORF1ab/nsp3402P402LcCtcTt1010B.1.1.280.003112
ORF1ab/nsp3402P402SCctTct1010B.1.177.460.009183
ORF1ab/nsp3402P402LcCtcTt1010B.1.2210.00071
ORF1ab/nsp3402P402SCctTct1010B.1.5260.000235
ORF1ab/nsp3402P402SCctTct1010B.1.5270.037037
ORF1ab/nsp3402P402RcCtcGt1010B.1.617.20.000038
ORF1ab/nsp3402P402PccTccC1010P.10.000158
ORF1ab/nsp3402P402ACctGct89All0.000002
ORF1ab/nsp3402P402ACcTGcC19All0
ORF1ab/nsp3402P402LcCtcTt99AY.1020.000239
ORF1ab/nsp3402P402HcCtcAt99AY.230.000628
ORF1ab/nsp3402P402SCctTct99AY.230.000628
ORF1ab/nsp3402P402LcCtcTt99AY.290.000142
ORF1ab/nsp3402P402delCCT---99AY.40.000014
ORF1ab/nsp3402P402LcCtcTt99AY.420.000362
ORF1ab/nsp3402P402HcCtcAt99AY.430.00004
ORF1ab/nsp3402P402HcCtcAt99B.10.000082
ORF1ab/nsp3402P402SCctTct99B.1.4710.02459
ORF1ab/nsp3402P402SCctTct88AY.1000.000368
ORF1ab/nsp3402P402SCctTct88AY.1180.000501
ORF1ab/nsp3402P402LcCtcTt88AY.1200.000297
ORF1ab/nsp3402P402SCctTct88AY.120.10.002568
ORF1ab/nsp3402P402TCctAct88AY.360.001186
ORF1ab/nsp3402P402LcCtcTt88AY.580.00726
ORF1ab/nsp3402P402LcCtcTt88B.1.1.10.002614
ORF1ab/nsp3402P402PccTccC88B.1.1.3160.007401
ORF1ab/nsp3402P402PccTccG88B.1.2580.000532
ORF1ab/nsp3402P402LcCtcTt88B.1.258.170.000832
ORF1ab/nsp3402P402SCctTct88B.1.5250.000905
ORF1ab/nsp3402P402PccTccA78B.1.6210.00062
ORF1ab/nsp3402P402PccTccC18B.1.6210.000089
ORF1ab/nsp3402P402SCctTct88P.1.150.001859
ORF1ab/nsp3402P402LcCtcTt88Q.80.001319
ORF1ab/nsp3402P402HcCtcAt77AY.1210.000947
ORF1ab/nsp3402P402HcCtcAt77AY.390.000173
ORF1ab/nsp3402P402LcCtcTt77AY.50.000145
ORF1ab/nsp3402P402SCctTct77AY.9.20.000257
ORF1ab/nsp3402P402HcCtcAt77B.1.1.2140.000388
ORF1ab/nsp3402P402LcCtcTt77B.1.1.5190.000278
ORF1ab/nsp3402P402delCCT---77B.1.1.70.000006
ORF1ab/nsp3402P402PccTccC77B.1.1770.000092
ORF1ab/nsp3402P402SCctTct77B.1.177.520.012302
ORF1ab/nsp3402P402SCctTct77B.1.2580.000466
ORF1ab/nsp3402P402SCctTct77B.1.360.001021
ORF1ab/nsp3402P402LcCtcTt77B.1.6090.003356
ORF1ab/nsp3402P402TCctAct66AY.1030.000037
ORF1ab/nsp3402P402SCctTct66AY.1200.000223
ORF1ab/nsp3402P402SCctTct66AY.200.000233
ORF1ab/nsp3402P402SCctTct66AY.290.000095
ORF1ab/nsp3402P402delCCT---66AY.30.00006
ORF1ab/nsp3402P402SCctTct66AY.300.002374
ORF1ab/nsp3402P402SCctTct66AY.610.000629
ORF1ab/nsp3402P402LcCtcTt66B.1.1.630.002315
ORF1ab/nsp3402P402SCctTct66B.1.160.160.005576
ORF1ab/nsp3402P402HcCtcAt66B.1.177.860.001101
ORF1ab/nsp3402P402SCctTct66B.1.3510.000178
ORF1ab/nsp3402P402PccTccG66B.1.36.180.002521
ORF1ab/nsp3402P402SCctTct66B.1.466.20.002347
ORF1ab/nsp3402P402SCctTct66B.1.5960.000523
ORF1ab/nsp3402P402PccTccC56B.1.617.20.000019
ORF1ab/nsp3402P402PccTccA16B.1.617.20.000004
ORF1ab/nsp3402P402LcCtcTt66B.1.6210.000531
ORF1ab/nsp3402P402LcCtcTt55A.2.40.016835
ORF1ab/nsp3402P402ACctGct55AY.1160.001434
ORF1ab/nsp3402P402HcCtcAt55AY.250.00003
ORF1ab/nsp3402P402SCctTct55AY.370.00158
ORF1ab/nsp3402P402PccTccC35AY.440.000018
ORF1ab/nsp3402P402PccTccG25AY.440.000012
ORF1ab/nsp3402P402SCctTct55AY.470.000156
ORF1ab/nsp3402P402LcCtcTt55AY.640.002976
ORF1ab/nsp3402P402LcCtcTt55AY.99.20.000461
ORF1ab/nsp3402P402LcCtcTt55B.1.177.810.000947
ORF1ab/nsp3402P402LcCtcTt55B.1.5260.000118
ORF1ab/nsp3402P402delCCT---55B.1.5960.000436
ORF1ab/nsp3402P402SCctTct55P.20.000933
ORF1ab/nsp3402P402LcCtcTt55R.10.00045
ORF1ab/nsp3402P402SCctTct44AY.1100.000451
ORF1ab/nsp3402P402LcCtcTt44AY.1190.000141
ORF1ab/nsp3402P402SCctTct44AY.1210.000541
ORF1ab/nsp3402P402HcCtcAt44AY.140.000352
ORF1ab/nsp3402P402HcCtcAt44AY.200.000155
ORF1ab/nsp3402P402LcCtcTt44AY.23.10.001669
ORF1ab/nsp3402P402PccTccC44AY.250.000024
ORF1ab/nsp3402P402HcCtcAt44AY.40.000006
ORF1ab/nsp3402P402LcCtcTt44AY.4.50.00043
ORF1ab/nsp3402P402SCctTct44AY.46.60.000289
ORF1ab/nsp3402P402TCctAct44AY.790.004843
ORF1ab/nsp3402P402SCctTct44AY.850.001709
ORF1ab/nsp3402P402SCctTct44AY.98.10.000194
ORF1ab/nsp3402P402PccTccC44B.10.000037
ORF1ab/nsp3402P402SCctTct44B.1.1.2220.000816
ORF1ab/nsp3402P402SCctTct44B.1.1.3180.001207
ORF1ab/nsp3402P402SCctTct44B.1.1.370.000771
ORF1ab/nsp3402P402PccTccG44B.1.1.5190.000159
ORF1ab/nsp3402P402PccTccC44B.1.1600.000125
ORF1ab/nsp3402P402SCctTct44B.1.177.210.000306
ORF1ab/nsp3402P402delCCT---44B.1.20.000035
ORF1ab/nsp3402P402PccTccG44B.1.2820.059701
ORF1ab/nsp3402P402LcCtcTt44B.1.360.000584
ORF1ab/nsp3402P402SCctTct44B.1.5750.001214
ORF1ab/nsp3402P402LcCtcTt44B.1.5950.001044
ORF1ab/nsp3402P402PccTccC24B.1.5960.000174
ORF1ab/nsp3402P402PccTccG24B.1.5960.000174
ORF1ab/nsp3402P402SCctTct44B.1.6370.000292
ORF1ab/nsp3402P402PccTccG44C.360.003643
ORF1ab/nsp3402P402SCctTct44C.370.000464
ORF1ab/nsp3402P402SCctTct44P.1.140.000191
ORF1ab/nsp3402P402SCctTct44P.1.170.000647
ORF1ab/nsp3402P402LcCtcTt33AY.1000.000138
ORF1ab/nsp3402P402LcCtcTt33AY.1010.001471
ORF1ab/nsp3402P402PccTccC33AY.1030.000019
ORF1ab/nsp3402P402PccTccC33AY.1160.00086
ORF1ab/nsp3402P402LcCtcTt33AY.1170.000254
ORF1ab/nsp3402P402delCCT---33AY.230.000209
ORF1ab/nsp3402P402SCctTct33AY.260.000085
ORF1ab/nsp3402P402SCctTct33AY.340.000291
ORF1ab/nsp3402P402LcCtcTt33AY.340.000291
ORF1ab/nsp3402P402SCctTct33AY.350.000699
ORF1ab/nsp3402P402RcCtcGt33AY.390.000074
ORF1ab/nsp3402P402TCctAct33AY.40.000005
ORF1ab/nsp3402P402PccTccC33AY.4.2.10.000447
ORF1ab/nsp3402P402SCctTct33AY.450.000365
ORF1ab/nsp3402P402LcCtcTt33AY.710.001425
ORF1ab/nsp3402P402SCctTct33AY.750.000168
ORF1ab/nsp3402P402SCctTct33AY.90.000203
ORF1ab/nsp3402P402LcCtcTt33AY.98.10.000145
ORF1ab/nsp3402P402HcCtcAt33B0.000383
ORF1ab/nsp3402P402LcCtcTt33B.1.1.1700.003741
ORF1ab/nsp3402P402LcCtcTt33B.1.1.2140.000166
ORF1ab/nsp3402P402LcCtcTt33B.1.1.2160.002671
ORF1ab/nsp3402P402LcCtcTt33B.1.1.2220.000612
ORF1ab/nsp3402P402SCctTct33B.1.1.2250.021583
ORF1ab/nsp3402P402HcCtcAt33B.1.1.2740.015152
ORF1ab/nsp3402P402SCctTct33B.1.1.280.000934
ORF1ab/nsp3402P402SCctTct33B.1.1.4260.107143
ORF1ab/nsp3402P402LcCtcTt33B.1.1.5160.2
ORF1ab/nsp3402P402SCctTct33B.1.177.100.002634
ORF1ab/nsp3402P402SCctTct33B.1.177.40.000633
ORF1ab/nsp3402P402LcCtcTt33B.1.177.800.005736
ORF1ab/nsp3402P402SCctTct33B.1.2400.000647
ORF1ab/nsp3402P402LcCtcTt33B.1.4290.000071
ORF1ab/nsp3402P402delCCT---33B.1.617.20.000011
ORF1ab/nsp3402P402SCctTct33B.1.6210.000266
ORF1ab/nsp3402P402LcCtcTt33B.1.6370.000219
ORF1ab/nsp3402P402LcCtcTt33C.36.30.001702
ORF1ab/nsp3402P402SCctTct33P.1.120.001452
ORF1ab/nsp3402P402LcCtcTt33P.1.150.000697
ORF1ab/nsp3402P402SCctTct33Q.20.00184
ORF1ab/nsp3402P402ACctGct120.055556
ORF1ab/nsp3402P402LcCTcTC120.055556
ORF1ab/nsp3402P402ACcTGcC120.055556
ORF1ab/nsp3402P402VCCTGTC120.055556
ORF1ab/nsp3402P402LcCtcTt120.055556
ORF1ab/nsp3402P402ICCtATt120.055556
ORF1ab/nsp3402P402TCctAct120.055556
ORF1ab/nsp3402P402ICCTATC120.055556
ORF1ab/nsp3402P402TCcTAcC120.055556
ORF1ab/nsp3402P402VCCtGTt120.055556
ORF1ab/nsp3402P402LcCtcTt22A0.000774
ORF1ab/nsp3402P402LcCtcTt22A.20.001324
ORF1ab/nsp3402P402LcCtcTt22A.30.004193
ORF1ab/nsp3402P402del1ccTcc-22All0
ORF1ab/nsp3402P402VCCTGTC12All0
ORF1ab/nsp3402P402ICCTATC12All0
ORF1ab/nsp3402P402ICCtATt12All0
ORF1ab/nsp3402P402VCCtGTt12All0
ORF1ab/nsp3402P402HcCtcAt22AY.1020.000053
ORF1ab/nsp3402P402SCctTct22AY.1040.003968
ORF1ab/nsp3402P402TCctAct22AY.1110.000366
ORF1ab/nsp3402P402SCctTct22AY.1130.000285
ORF1ab/nsp3402P402LcCtcTt22AY.1130.000285
ORF1ab/nsp3402P402SCctTct22AY.1170.000169
ORF1ab/nsp3402P402TCctAct22AY.1170.000169
ORF1ab/nsp3402P402LcCtcTt22AY.1180.000125
ORF1ab/nsp3402P402TCctAct22AY.1200.000074
ORF1ab/nsp3402P402LcCtcTt22AY.130.000322
ORF1ab/nsp3402P402LcCtcTt22AY.140.000176
ORF1ab/nsp3402P402delCCT---22AY.260.000057
ORF1ab/nsp3402P402LcCtcTt22AY.260.000057
ORF1ab/nsp3402P402SCctTct22AY.270.000129
ORF1ab/nsp3402P402SCctTct22AY.330.000134
ORF1ab/nsp3402P402delCCT---22AY.390.000049
ORF1ab/nsp3402P402HcCtcAt22AY.4.20.000043
ORF1ab/nsp3402P402SCctTct22AY.4.50.000215
ORF1ab/nsp3402P402PccTccA22AY.420.00008
ORF1ab/nsp3402P402RcCtcGt22AY.430.000009
ORF1ab/nsp3402P402TCctAct22AY.430.000009
ORF1ab/nsp3402P402PccTccC12AY.430.000004
ORF1ab/nsp3402P402PccTccA12AY.430.000004
ORF1ab/nsp3402P402SCctTct22AY.460.000208
ORF1ab/nsp3402P402LcCtcTt22AY.46.30.001867
ORF1ab/nsp3402P402HcCtcAt22AY.46.40.000329
ORF1ab/nsp3402P402LcCtcTt22AY.46.60.000144
ORF1ab/nsp3402P402PccTccC22AY.50.000041
ORF1ab/nsp3402P402SCctTct22AY.540.000191
ORF1ab/nsp3402P402SCctTct22AY.590.001059
ORF1ab/nsp3402P402SCctTct22AY.620.000871
ORF1ab/nsp3402P402SCctTct22AY.630.000774
ORF1ab/nsp3402P402LcCtcTt22AY.740.000231
ORF1ab/nsp3402P402SCctTct22AY.920.000575
ORF1ab/nsp3402P402SCctTct22AY.99.20.000184
ORF1ab/nsp3402P402delCCT---22B.1.10.000036
ORF1ab/nsp3402P402HcCtcAt22B.1.10.000036
ORF1ab/nsp3402P402PccTccA22B.1.10.000036
ORF1ab/nsp3402P402delCCT---22B.1.1.2000.014925
ORF1ab/nsp3402P402SCctTct22B.1.1.2030.033898
ORF1ab/nsp3402P402SCctTct22B.1.1.2290.011494
ORF1ab/nsp3402P402LcCtcTt22B.1.1.2290.011494
ORF1ab/nsp3402P402SCctTct22B.1.1.2910.001485
ORF1ab/nsp3402P402SCctTct22B.1.1.3970.004505
ORF1ab/nsp3402P402LcCtcTt22B.1.1.700.000682
ORF1ab/nsp3402P402SCctTct22B.1.1.700.000682
ORF1ab/nsp3402P402SCctTct22B.1.1180.013423
ORF1ab/nsp3402P402LcCtcTt22B.1.1390.001466
ORF1ab/nsp3402P402SCctTct22B.1.177.770.001452
ORF1ab/nsp3402P402SCctTct22B.1.2210.000142
ORF1ab/nsp3402P402delCCT---22B.1.2230.005556
ORF1ab/nsp3402P402LcCtcTt22B.1.2340.000264
ORF1ab/nsp3402P402PccTccG22B.1.2400.000431
ORF1ab/nsp3402P402TCctAct22B.1.2410.001623
ORF1ab/nsp3402P402LcCtcTt22B.1.2430.000139
ORF1ab/nsp3402P402PccTccC22B.1.258.170.000208
ORF1ab/nsp3402P402SCctTct22B.1.30.005236
ORF1ab/nsp3402P402LcCtcTt22B.1.36.180.00084
ORF1ab/nsp3402P402SCctTct22B.1.36.220.002415
ORF1ab/nsp3402P402SCctTct22B.1.36.380.003284
ORF1ab/nsp3402P402PccTccA22B.1.4270.000101
ORF1ab/nsp3402P402SCctTct22B.1.4650.007605
ORF1ab/nsp3402P402SCctTct22B.1.4990.002101
ORF1ab/nsp3402P402LcCtcTt22B.1.5050.008772
ORF1ab/nsp3402P402LcCtcTt22B.1.5170.000854
ORF1ab/nsp3402P402delCCT---22B.1.5260.000047
ORF1ab/nsp3402P402SCctTct22B.1.5370.04
ORF1ab/nsp3402P402SCctTct22B.1.5770.001375
ORF1ab/nsp3402P402SCctTct22B.1.5950.000522
ORF1ab/nsp3402P402LcCtcTt22B.1.6100.007092
ORF1ab/nsp3402P402HcCtcAt22B.1.617.10.000258
ORF1ab/nsp3402P402delCCT---22B.1.6210.000177
ORF1ab/nsp3402P402LcCtcTt22C.370.000232
ORF1ab/nsp3402P402TCctAct22P.10.000032
ORF1ab/nsp3402P402delCCT---22P.10.000032
ORF1ab/nsp3402P402delCCT---22P.1.120.000968
ORF1ab/nsp3402P402LcCtcTt22P.1.170.000324
ORF1ab/nsp3402P402SCctTct22P.1.70.000639
ORF1ab/nsp3402P402LcCtcTt22P.1.70.000639
ORF1ab/nsp3402P402LcCtcTt22P.20.000373
ORF1ab/nsp3402P402delCCT---22R.10.00018
ORF1ab/nsp3402P402PccTccC110.055556
ORF1ab/nsp3402P402SCctTct11A.2.50.000499
ORF1ab/nsp3402P402SCctTct11A.23.10.000704
ORF1ab/nsp3402P402LcCtcTt11A.250.018182
ORF1ab/nsp3402P402SCctTct11AE.80.000489
ORF1ab/nsp3402P402SCctTct11AH.20.012048
ORF1ab/nsp3402P402LcCtcTt11AH.30.003802
ORF1ab/nsp3402P402KCCTAAG11All0
ORF1ab/nsp3402P402LcCtcTt11AY.10.000396
ORF1ab/nsp3402P402TCctAct11AY.1000.000046
ORF1ab/nsp3402P402PccTccC11AY.1000.000046
ORF1ab/nsp3402P402HcCtcAt11AY.1030.000006
ORF1ab/nsp3402P402TCctAct11AY.1040.001984
ORF1ab/nsp3402P402LcCtcTt11AY.1060.000335
ORF1ab/nsp3402P402ACctGct11AY.1150.005208
ORF1ab/nsp3402P402SCctTct11AY.1160.000287
ORF1ab/nsp3402P402SCctTct11AY.116.10.000311
ORF1ab/nsp3402P402LcCtcTt11AY.116.10.000311
ORF1ab/nsp3402P402PccTccC11AY.1180.000063
ORF1ab/nsp3402P402PccTccC11AY.1190.000035
ORF1ab/nsp3402P402TCctAct11AY.1190.000035
ORF1ab/nsp3402P402LcCtcTt11AY.120.000316
ORF1ab/nsp3402P402HcCtcAt11AY.120.000316
ORF1ab/nsp3402P402del1ccTcc-11AY.1200.000037
ORF1ab/nsp3402P402PccTccC11AY.1200.000037
ORF1ab/nsp3402P402delCCT---11AY.1210.000135
ORF1ab/nsp3402P402SCctTct11AY.130.000161
ORF1ab/nsp3402P402SCctTct11AY.160.00038
ORF1ab/nsp3402P402TCctAct11AY.190.00114
ORF1ab/nsp3402P402delCCT---11AY.190.00114
ORF1ab/nsp3402P402SCctTct11AY.20.000356
ORF1ab/nsp3402P402delCCT---11AY.200.000039
ORF1ab/nsp3402P402TCctAct11AY.200.000039
ORF1ab/nsp3402P402LcCtcTt11AY.230.00007
ORF1ab/nsp3402P402PccTccC11AY.230.00007
ORF1ab/nsp3402P402SCctTct11AY.23.10.000417
ORF1ab/nsp3402P402SCctTct11AY.240.000431
ORF1ab/nsp3402P402delCCT---11AY.250.000006
ORF1ab/nsp3402P402HcCtcAt11AY.260.000028
ORF1ab/nsp3402P402LcCtcTt11AY.270.000065
ORF1ab/nsp3402P402delCCT---11AY.290.000016
ORF1ab/nsp3402P402SCctTct11AY.3.10.000085
ORF1ab/nsp3402P402delCCT---11AY.3.10.000085
ORF1ab/nsp3402P402SCctTct11AY.320.000532
ORF1ab/nsp3402P402ACctGct11AY.330.000067
ORF1ab/nsp3402P402HcCtcAt11AY.330.000067
ORF1ab/nsp3402P402SCctTct11AY.34.10.00051
ORF1ab/nsp3402P402PccTccC11AY.390.000025
ORF1ab/nsp3402P402HcCtcAt11AY.39.10.00004
ORF1ab/nsp3402P402PccTccC11AY.4.20.000022
ORF1ab/nsp3402P402TCctAct11AY.4.20.000022
ORF1ab/nsp3402P402SCctTct11AY.4.2.10.000149
ORF1ab/nsp3402P402LcCtcTt11AY.4.30.000842
ORF1ab/nsp3402P402LcCtcTt11AY.4.40.000409
ORF1ab/nsp3402P402SCctTct11AY.4.40.000409
ORF1ab/nsp3402P402TCctAct11AY.420.00004
ORF1ab/nsp3402P402SCctTct11AY.420.00004
ORF1ab/nsp3402P402TCctAct11AY.440.000006
ORF1ab/nsp3402P402HcCtcAt11AY.440.000006
ORF1ab/nsp3402P402TCctAct11AY.450.000122
ORF1ab/nsp3402P402HcCtcAt11AY.450.000122
ORF1ab/nsp3402P402PccTccG11AY.450.000122
ORF1ab/nsp3402P402LcCtcTt11AY.450.000122
ORF1ab/nsp3402P402RcCtcGt11AY.450.000122
ORF1ab/nsp3402P402HcCtcAt11AY.460.000104
ORF1ab/nsp3402P402delCCT---11AY.46.20.000635
ORF1ab/nsp3402P402SCctTct11AY.46.40.000165
ORF1ab/nsp3402P402PccTccG11AY.470.000031
ORF1ab/nsp3402P402TCctAct11AY.50.000021
ORF1ab/nsp3402P402delCCT---11AY.50.000021
ORF1ab/nsp3402P402SCctTct11AY.5.40.000277
ORF1ab/nsp3402P402LcCtcTt11AY.520.000814
ORF1ab/nsp3402P402HcCtcAt11AY.520.000814
ORF1ab/nsp3402P402SCctTct11AY.530.000288
ORF1ab/nsp3402P402PccTccC11AY.590.00053
ORF1ab/nsp3402P402TCctAct11AY.60.000041
ORF1ab/nsp3402P402SCctTct11AY.60.000041
ORF1ab/nsp3402P402HcCtcAt11AY.610.000105
ORF1ab/nsp3402P402LcCtcTt11AY.610.000105
ORF1ab/nsp3402P402HcCtcAt11AY.620.000436
ORF1ab/nsp3402P402SCctTct11AY.670.000464
ORF1ab/nsp3402P402delCCT---11AY.680.000274
ORF1ab/nsp3402P402TCctAct11AY.70.000196
ORF1ab/nsp3402P402SCctTct11AY.7.10.000113
ORF1ab/nsp3402P402SCctTct11AY.710.000475
ORF1ab/nsp3402P402SCctTct11AY.740.000116
ORF1ab/nsp3402P402LcCtcTt11AY.750.000056
ORF1ab/nsp3402P402LcCtcTt11AY.770.001127
ORF1ab/nsp3402P402SCctTct11AY.80.000606
ORF1ab/nsp3402P402LcCtcTt11AY.840.000437
ORF1ab/nsp3402P402SCctTct11AY.840.000437
ORF1ab/nsp3402P402TCctAct11AY.840.000437
ORF1ab/nsp3402P402SCctTct11AY.860.00083
ORF1ab/nsp3402P402TCctAct11AY.880.000884
ORF1ab/nsp3402P402HcCtcAt11AY.90.000068
ORF1ab/nsp3402P402LcCtcTt11AY.90.000068
ORF1ab/nsp3402P402PccTccC11AY.9.20.000037
ORF1ab/nsp3402P402LcCtcTt11AY.9.20.000037
ORF1ab/nsp3402P402SCctTct11AY.910.00073
ORF1ab/nsp3402P402HcCtcAt11AY.930.000273
ORF1ab/nsp3402P402LcCtcTt11AY.960.002075
ORF1ab/nsp3402P402SCctTct11AY.980.000079
ORF1ab/nsp3402P402HcCtcAt11AY.98.10.000048
ORF1ab/nsp3402P402TCctAct11AY.98.10.000048
ORF1ab/nsp3402P402delCCT---11AY.98.10.000048
ORF1ab/nsp3402P402del1ccTcc-11B0.000128
ORF1ab/nsp3402P402LcCtcTt11B0.000128
ORF1ab/nsp3402P402TCctAct11B.10.000009
ORF1ab/nsp3402P402PccTccC11B.1.1.10.000327
ORF1ab/nsp3402P402LcCtcTt11B.1.1.1280.007092
ORF1ab/nsp3402P402LcCtcTt11B.1.1.1570.000913
ORF1ab/nsp3402P402SCctTct11B.1.1.1700.001247
ORF1ab/nsp3402P402SCctTct11B.1.1.1920.002309
ORF1ab/nsp3402P402delCCT---11B.1.1.1920.002309
ORF1ab/nsp3402P402SCctTct11B.1.1.1940.00495
ORF1ab/nsp3402P402SCctTct11B.1.1.2070.001182
ORF1ab/nsp3402P402SCctTct11B.1.1.2090.008929
ORF1ab/nsp3402P402delCCT---11B.1.1.2210.010101
ORF1ab/nsp3402P402LcCtcTt11B.1.1.2270.004348
ORF1ab/nsp3402P402SCctTct11B.1.1.2310.003096
ORF1ab/nsp3402P402LcCtcTt11B.1.1.2540.011236
ORF1ab/nsp3402P402LcCtcTt11B.1.1.2690.001353
ORF1ab/nsp3402P402LcCtcTt11B.1.1.2840.000107
ORF1ab/nsp3402P402PccTccC11B.1.1.2850.006536
ORF1ab/nsp3402P402delCCT---11B.1.1.3010.001179
ORF1ab/nsp3402P402SCctTct11B.1.1.3060.000438
ORF1ab/nsp3402P402PccTccC11B.1.1.3150.008475
ORF1ab/nsp3402P402delCCT---11B.1.1.3160.000925
ORF1ab/nsp3402P402LcCtcTt11B.1.1.3160.000925
ORF1ab/nsp3402P402delCCT---11B.1.1.3200.018182
ORF1ab/nsp3402P402SCctTct11B.1.1.3290.003846
ORF1ab/nsp3402P402LcCtcTt11B.1.1.330.000421
ORF1ab/nsp3402P402delCCT---11B.1.1.330.000421
ORF1ab/nsp3402P402delCCT---11B.1.1.3370.003597
ORF1ab/nsp3402P402SCctTct11B.1.1.3720.000689
ORF1ab/nsp3402P402delCCT---11B.1.1.4160.000905
ORF1ab/nsp3402P402LcCtcTt11B.1.1.4480.002033
ORF1ab/nsp3402P402delCCT---11B.1.1.5190.00004
ORF1ab/nsp3402P402TCctAct11B.1.1.70.000001
ORF1ab/nsp3402P402LcCtcTt11B.1.1.890.006061
ORF1ab/nsp3402P402LcCtcTt11B.1.110.30.000718
ORF1ab/nsp3402P402LcCtcTt11B.1.1280.000635
ORF1ab/nsp3402P402PccTccG11B.1.160.160.000929
ORF1ab/nsp3402P402HcCtcAt11B.1.160.230.004831
ORF1ab/nsp3402P402delCCT---11B.1.1770.000013
ORF1ab/nsp3402P402SCctTct11B.1.177.330.001645
ORF1ab/nsp3402P402LcCtcTt11B.1.177.40.000211
ORF1ab/nsp3402P402delCCT---11B.1.177.40.000211
ORF1ab/nsp3402P402delCCT---11B.1.177.570.000281
ORF1ab/nsp3402P402LcCtcTt11B.1.177.690.001484
ORF1ab/nsp3402P402SCctTct11B.1.177.730.000566
ORF1ab/nsp3402P402LcCtcTt11B.1.177.750.001041
ORF1ab/nsp3402P402PccTccC11B.1.20.000009
ORF1ab/nsp3402P402TCctAct11B.1.20.000009
ORF1ab/nsp3402P402delCCT---11B.1.2210.000071
ORF1ab/nsp3402P402PccTccA11B.1.2220.001692
ORF1ab/nsp3402P402SCctTct11B.1.2370.004975
ORF1ab/nsp3402P402LcCtcTt11B.1.2390.001221
ORF1ab/nsp3402P402HcCtcAt11B.1.2430.00007
ORF1ab/nsp3402P402SCctTct11B.1.2430.00007
ORF1ab/nsp3402P402TCctAct11B.1.2580.000067
ORF1ab/nsp3402P402SCctTct11B.1.258.140.00098
ORF1ab/nsp3402P402LcCtcTt11B.1.258.30.001675
ORF1ab/nsp3402P402TCctAct11B.1.2840.013158
ORF1ab/nsp3402P402SCctTct11B.1.3110.000275
ORF1ab/nsp3402P402KCCTAAG11B.1.3320.003497
ORF1ab/nsp3402P402LcCtcTt11B.1.3490.000715
ORF1ab/nsp3402P402HcCtcAt11B.1.3510.00003
ORF1ab/nsp3402P402PccTccC11B.1.3510.00003
ORF1ab/nsp3402P402SCctTct11B.1.3560.001727
ORF1ab/nsp3402P402delCCT---11B.1.360.000146
ORF1ab/nsp3402P402SCctTct11B.1.36.160.001425
ORF1ab/nsp3402P402delCCT---11B.1.36.160.001425
ORF1ab/nsp3402P402SCctTct11B.1.36.170.000494
ORF1ab/nsp3402P402delCCT---11B.1.36.180.00042
ORF1ab/nsp3402P402SCctTct11B.1.36.180.00042
ORF1ab/nsp3402P402SCctTct11B.1.36.190.009259
ORF1ab/nsp3402P402SCctTct11B.1.36.290.000517
ORF1ab/nsp3402P402SCctTct11B.1.3620.001541
ORF1ab/nsp3402P402LcCtcTt11B.1.3670.000792
ORF1ab/nsp3402P402TCctAct11B.1.3690.000285
ORF1ab/nsp3402P402LcCtcTt11B.1.3690.000285
ORF1ab/nsp3402P402SCctTct11B.1.370.014706
ORF1ab/nsp3402P402delCCT---11B.1.4200.010417
ORF1ab/nsp3402P402SCctTct11B.1.4220.000812
ORF1ab/nsp3402P402delCCT---11B.1.4270.00005
ORF1ab/nsp3402P402delCCT---11B.1.4290.000024
ORF1ab/nsp3402P402SCctTct11B.1.4560.003268
ORF1ab/nsp3402P402LcCtcTt11B.1.4590.004082
ORF1ab/nsp3402P402TCctAct11B.1.466.20.000391
ORF1ab/nsp3402P402TCctAct11B.1.5250.000113
ORF1ab/nsp3402P402PccTccC11B.1.5260.000024
ORF1ab/nsp3402P402PccTccC11B.1.5300.007143
ORF1ab/nsp3402P402LcCtcTt11B.1.5510.00129
ORF1ab/nsp3402P402SCctTct11B.1.5610.000397
ORF1ab/nsp3402P402LcCtcTt11B.1.5670.003333
ORF1ab/nsp3402P402LcCtcTt11B.1.5690.014493
ORF1ab/nsp3402P402SCctTct11B.1.5760.000907
ORF1ab/nsp3402P402HcCtcAt11B.1.5900.004545
ORF1ab/nsp3402P402delCCT---11B.1.5950.000261
ORF1ab/nsp3402P402HcCtcAt11B.1.5960.000087
ORF1ab/nsp3402P402TCctAct11B.1.5960.000087
ORF1ab/nsp3402P402PccTccG11B.1.6090.000479
ORF1ab/nsp3402P402LcCtcTt11B.1.617.10.000129
ORF1ab/nsp3402P402SCctTct11B.1.617.10.000129
ORF1ab/nsp3402P402SCctTct11B.1.619.10.000641
ORF1ab/nsp3402P402HcCtcAt11B.1.621.10.000506
ORF1ab/nsp3402P402LcCtcTt11B.1.6280.000352
ORF1ab/nsp3402P402SCctTct11B.30.000831
ORF1ab/nsp3402P402delCCT---11B.340.013699
ORF1ab/nsp3402P402SCctTct11B.390.002331
ORF1ab/nsp3402P402SCctTct11B.400.000364
ORF1ab/nsp3402P402delCCT---11B.570.015152
ORF1ab/nsp3402P402HcCtcAt11C.10.002392
ORF1ab/nsp3402P402delCCT---11C.370.000116
ORF1ab/nsp3402P402LcCtcTt11D.20.000075
ORF1ab/nsp3402P402delCCT---11D.20.000075
ORF1ab/nsp3402P402TCctAct11L.10.001905
ORF1ab/nsp3402P402delCCT---11N.60.007092
ORF1ab/nsp3402P402SCctTct11N.90.005952
ORF1ab/nsp3402P402HcCtcAt11P.10.000016
ORF1ab/nsp3402P402RcCtcGt11P.10.000016
ORF1ab/nsp3402P402SCctTct11P.1.10.000318
ORF1ab/nsp3402P402SCctTct11P.1.100.000269
ORF1ab/nsp3402P402LcCtcTt11P.1.130.000898
ORF1ab/nsp3402P402delCCT---11P.1.140.000048
ORF1ab/nsp3402P402TCctAct11P.1.140.000048
ORF1ab/nsp3402P402LcCtcTt11Q.60.006623
ORF1ab/nsp3402P402SCctTct11Q.80.000165
ORF1ab/nsp3402P402PccTccA11R.10.00009
ORF1ab/nsp3402P402SCctTct11R.10.00009