CoV-GLUE | Mutations | Mutation
Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):
ORF | CodonNum | Mut | ORF1abMut | MutType | RefCodon | MutCodon | AACount | CodonCount | CodonProp | Genome Position |
ORF1ab/nsp3 | 396 | F396del | F1214del | del | TTT | --- | 277 | 277 | 1 | 3905-3907 |
ORF1ab/nsp3 | 396 | F396S | F1214S | nonsyn | tTt | tCt | 271 | 270 | 0.99631 | 3905-3907 |
ORF1ab/nsp3 | 396 | F396S | F1214S | nonsyn | tTT | tCG | 271 | 1 | 0.00369004 | 3905-3907 |
ORF1ab/nsp3 | 396 | F396L | F1214L | nonsyn | Ttt | Ctt | 217 | 183 | 0.843318 | 3905-3907 |
ORF1ab/nsp3 | 396 | F396L | F1214L | nonsyn | ttT | ttG | 217 | 25 | 0.115207 | 3905-3907 |
ORF1ab/nsp3 | 396 | F396L | F1214L | nonsyn | ttT | ttA | 217 | 8 | 0.0368664 | 3905-3907 |
ORF1ab/nsp3 | 396 | F396L | F1214L | nonsyn | TtT | CtG | 217 | 1 | 0.00460829 | 3905-3907 |
ORF1ab/nsp3 | 396 | F396F | F1214F | syn | ttT | ttC | 86 | 86 | 1 | 3905-3907 |
ORF1ab/nsp3 | 396 | F396V | F1214V | nonsyn | Ttt | Gtt | 23 | 19 | 0.826087 | 3905-3907 |
ORF1ab/nsp3 | 396 | F396V | F1214V | nonsyn | TtT | GtG | 23 | 2 | 0.0869565 | 3905-3907 |
ORF1ab/nsp3 | 396 | F396V | F1214V | nonsyn | TtT | GtC | 23 | 2 | 0.0869565 | 3905-3907 |
ORF1ab/nsp3 | 396 | F396I | F1214I | nonsyn | Ttt | Att | 21 | 19 | 0.904762 | 3905-3907 |
ORF1ab/nsp3 | 396 | F396I | F1214I | nonsyn | TtT | AtC | 21 | 2 | 0.0952381 | 3905-3907 |
ORF1ab/nsp3 | 396 | F396C | F1214C | nonsyn | tTt | tGt | 9 | 9 | 1 | 3905-3907 |
ORF1ab/nsp3 | 396 | F396del1 | F1214del1 | del | Ttt | -tt | 8 | 7 | 0.875 | 3905-3907 |
ORF1ab/nsp3 | 396 | F396del1 | F1214del1 | del | ttT | tt- | 8 | 1 | 0.125 | 3905-3907 |
ORF1ab/nsp3 | 396 | F396Y | F1214Y | nonsyn | tTt | tAt | 4 | 4 | 1 | 3905-3907 |
ORF1ab/nsp3 | 396 | F396del2 | F1214del2 | del | tTT | t-- | 3 | 3 | 1 | 3905-3907 |
ORF1ab/nsp3 | 396 | F396M | F1214M | nonsyn | TtT | AtG | 2 | 2 | 1 | 3905-3907 |
ORF1ab/nsp3 | 396 | F396P | F1214P | nonsyn | TTT | CCG | 2 | 1 | 0.5 | 3905-3907 |
ORF1ab/nsp3 | 396 | F396P | F1214P | nonsyn | TTt | CCt | 2 | 1 | 0.5 | 3905-3907 |
ORF1ab/nsp3 | 396 | F396N | F1214N | nonsyn | TTt | AAt | 1 | 1 | 1 | 3905-3907 |
ORF1ab/nsp3 | 396 | F396Q | F1214Q | nonsyn | TTT | CAG | 1 | 1 | 1 | 3905-3907 |
ORF1ab/nsp3 | 396 | F396H | F1214H | nonsyn | TTt | CAt | 1 | 1 | 1 | 3905-3907 |
ORF1ab/nsp3 | 396 | F396X | F1214X | nonsyn | tTT | tAG | 1 | 1 | 1 | 3905-3907 |
Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):
ORF | CodonNum | Mut | RefCodon | MutCodon | CodonCount | AACount | Lineage | LineageCodonProp |
ORF1ab/nsp3 | 396 | F396del | TTT | --- | 277 | 277 | All | 0.000053 |
ORF1ab/nsp3 | 396 | F396S | tTt | tCt | 270 | 271 | All | 0.000052 |
ORF1ab/nsp3 | 396 | F396S | tTT | tCG | 1 | 271 | All | 0 |
ORF1ab/nsp3 | 396 | F396L | Ttt | Ctt | 183 | 217 | All | 0.000035 |
ORF1ab/nsp3 | 396 | F396L | ttT | ttG | 25 | 217 | All | 0.000005 |
ORF1ab/nsp3 | 396 | F396L | ttT | ttA | 8 | 217 | All | 0.000002 |
ORF1ab/nsp3 | 396 | F396L | TtT | CtG | 1 | 217 | All | 0 |
ORF1ab/nsp3 | 396 | F396S | tTt | tCt | 130 | 130 | B.1.177 | 0.001712 |
ORF1ab/nsp3 | 396 | F396F | ttT | ttC | 86 | 86 | All | 0.000016 |
ORF1ab/nsp3 | 396 | F396L | Ttt | Ctt | 67 | 68 | B.1.1.7 | 0.00006 |
ORF1ab/nsp3 | 396 | F396L | ttT | ttG | 1 | 68 | B.1.1.7 | 0.000001 |
ORF1ab/nsp3 | 396 | F396del | TTT | --- | 60 | 60 | AY.4 | 0.000093 |
ORF1ab/nsp3 | 396 | F396del | TTT | --- | 52 | 52 | B.1.1.442 | 0.962963 |
ORF1ab/nsp3 | 396 | F396S | tTt | tCt | 40 | 40 | B.1.1.7 | 0.000036 |
ORF1ab/nsp3 | 396 | F396del | TTT | --- | 33 | 33 | B.1.427 | 0.001666 |
ORF1ab/nsp3 | 396 | F396F | ttT | ttC | 26 | 26 | AY.4 | 0.00004 |
ORF1ab/nsp3 | 396 | F396V | Ttt | Gtt | 19 | 23 | All | 0.000004 |
ORF1ab/nsp3 | 396 | F396V | TtT | GtC | 2 | 23 | All | 0 |
ORF1ab/nsp3 | 396 | F396V | TtT | GtG | 2 | 23 | All | 0 |
ORF1ab/nsp3 | 396 | F396S | tTt | tCt | 23 | 23 | AY.29 | 0.000363 |
ORF1ab/nsp3 | 396 | F396I | Ttt | Att | 19 | 21 | All | 0.000004 |
ORF1ab/nsp3 | 396 | F396I | TtT | AtC | 2 | 21 | All | 0 |
ORF1ab/nsp3 | 396 | F396F | ttT | ttC | 19 | 19 | B.1.1.7 | 0.000017 |
ORF1ab/nsp3 | 396 | F396L | ttT | ttG | 15 | 18 | B.1 | 0.000137 |
ORF1ab/nsp3 | 396 | F396L | Ttt | Ctt | 2 | 18 | B.1 | 0.000018 |
ORF1ab/nsp3 | 396 | F396L | ttT | ttA | 1 | 18 | B.1 | 0.000009 |
ORF1ab/nsp3 | 396 | F396del | TTT | --- | 16 | 16 | C.36.3 | 0.009075 |
ORF1ab/nsp3 | 396 | F396L | Ttt | Ctt | 12 | 12 | AY.99.2 | 0.001106 |
ORF1ab/nsp3 | 396 | F396L | Ttt | Ctt | 11 | 11 | B.1.617.2 | 0.000041 |
ORF1ab/nsp3 | 396 | F396L | Ttt | Ctt | 8 | 10 | AY.4 | 0.000012 |
ORF1ab/nsp3 | 396 | F396L | ttT | ttA | 2 | 10 | AY.4 | 0.000003 |
ORF1ab/nsp3 | 396 | F396F | ttT | ttC | 10 | 10 | B.1.160 | 0.000312 |
ORF1ab/nsp3 | 396 | F396I | Ttt | Att | 10 | 10 | B.1.617.2 | 0.000038 |
ORF1ab/nsp3 | 396 | F396C | tTt | tGt | 9 | 9 | All | 0.000002 |
ORF1ab/nsp3 | 396 | F396del1 | Ttt | -tt | 7 | 8 | All | 0.000001 |
ORF1ab/nsp3 | 396 | F396del1 | ttT | tt- | 1 | 8 | All | 0 |
ORF1ab/nsp3 | 396 | F396L | Ttt | Ctt | 8 | 8 | AY.117 | 0.000676 |
ORF1ab/nsp3 | 396 | F396S | tTt | tCt | 8 | 8 | AY.4 | 0.000012 |
ORF1ab/nsp3 | 396 | F396S | tTt | tCt | 8 | 8 | AY.98.1 | 0.000387 |
ORF1ab/nsp3 | 396 | F396del | TTT | --- | 8 | 8 | B.1.1.7 | 0.000007 |
ORF1ab/nsp3 | 396 | F396V | Ttt | Gtt | 8 | 8 | B.1.621 | 0.000708 |
ORF1ab/nsp3 | 396 | F396del | TTT | --- | 7 | 7 | B.1.2 | 0.000062 |
ORF1ab/nsp3 | 396 | F396V | TtT | GtC | 2 | 6 | 0.111111 | |
ORF1ab/nsp3 | 396 | F396V | TtT | GtG | 2 | 6 | 0.111111 | |
ORF1ab/nsp3 | 396 | F396V | Ttt | Gtt | 2 | 6 | 0.111111 | |
ORF1ab/nsp3 | 396 | F396F | ttT | ttC | 6 | 6 | AY.33 | 0.000401 |
ORF1ab/nsp3 | 396 | F396del | TTT | --- | 6 | 6 | AY.44 | 0.000037 |
ORF1ab/nsp3 | 396 | F396S | tTt | tCt | 6 | 6 | AY.46.6 | 0.000433 |
ORF1ab/nsp3 | 396 | F396del | TTT | --- | 6 | 6 | B.1.110.3 | 0.00431 |
ORF1ab/nsp3 | 396 | F396S | tTt | tCt | 6 | 6 | B.1.36.28 | 0.034483 |
ORF1ab/nsp3 | 396 | F396L | Ttt | Ctt | 6 | 6 | B.1.429 | 0.000141 |
ORF1ab/nsp3 | 396 | F396del | TTT | --- | 6 | 6 | B.1.617.2 | 0.000023 |
ORF1ab/nsp3 | 396 | F396L | ttT | ttG | 3 | 5 | 0.166667 | |
ORF1ab/nsp3 | 396 | F396L | TtT | CtG | 1 | 5 | 0.055556 | |
ORF1ab/nsp3 | 396 | F396L | Ttt | Ctt | 1 | 5 | 0.055556 | |
ORF1ab/nsp3 | 396 | F396S | tTt | tCt | 5 | 5 | A | 0.001935 |
ORF1ab/nsp3 | 396 | F396L | Ttt | Ctt | 5 | 5 | AY.39.1 | 0.000198 |
ORF1ab/nsp3 | 396 | F396L | ttT | ttG | 5 | 5 | AY.92 | 0.001436 |
ORF1ab/nsp3 | 396 | F396del | TTT | --- | 5 | 5 | B.1 | 0.000046 |
ORF1ab/nsp3 | 396 | F396L | Ttt | Ctt | 5 | 5 | B.1.2 | 0.000044 |
ORF1ab/nsp3 | 396 | F396F | ttT | ttC | 5 | 5 | B.1.210 | 0.010661 |
ORF1ab/nsp3 | 396 | F396S | tTt | tCt | 5 | 5 | B.1.351 | 0.000149 |
ORF1ab/nsp3 | 396 | F396del | TTT | --- | 5 | 5 | B.1.596 | 0.000436 |
ORF1ab/nsp3 | 396 | F396del | TTT | --- | 5 | 5 | P.1 | 0.000079 |
ORF1ab/nsp3 | 396 | F396I | Ttt | Att | 2 | 4 | 0.111111 | |
ORF1ab/nsp3 | 396 | F396I | TtT | AtC | 2 | 4 | 0.111111 | |
ORF1ab/nsp3 | 396 | F396Y | tTt | tAt | 4 | 4 | All | 0.000001 |
ORF1ab/nsp3 | 396 | F396del | TTT | --- | 4 | 4 | AY.39 | 0.000099 |
ORF1ab/nsp3 | 396 | F396L | Ttt | Ctt | 4 | 4 | AY.43 | 0.000018 |
ORF1ab/nsp3 | 396 | F396L | Ttt | Ctt | 4 | 4 | AY.44 | 0.000024 |
ORF1ab/nsp3 | 396 | F396S | tTt | tCt | 4 | 4 | AY.68 | 0.001095 |
ORF1ab/nsp3 | 396 | F396del | TTT | --- | 4 | 4 | B.1.1 | 0.000073 |
ORF1ab/nsp3 | 396 | F396S | tTt | tCt | 4 | 4 | B.1.2 | 0.000035 |
ORF1ab/nsp3 | 396 | F396L | Ttt | Ctt | 4 | 4 | P.1 | 0.000063 |
ORF1ab/nsp3 | 396 | F396del2 | tTT | t-- | 3 | 3 | All | 0.000001 |
ORF1ab/nsp3 | 396 | F396del | TTT | --- | 3 | 3 | AY.23 | 0.000209 |
ORF1ab/nsp3 | 396 | F396del2 | tTT | t-- | 3 | 3 | AY.25 | 0.000018 |
ORF1ab/nsp3 | 396 | F396del | TTT | --- | 3 | 3 | AY.26 | 0.000085 |
ORF1ab/nsp3 | 396 | F396L | Ttt | Ctt | 3 | 3 | AY.37 | 0.000948 |
ORF1ab/nsp3 | 396 | F396V | Ttt | Gtt | 3 | 3 | AY.4 | 0.000005 |
ORF1ab/nsp3 | 396 | F396I | Ttt | Att | 3 | 3 | AY.43 | 0.000013 |
ORF1ab/nsp3 | 396 | F396L | Ttt | Ctt | 3 | 3 | AY.98.1 | 0.000145 |
ORF1ab/nsp3 | 396 | F396L | Ttt | Ctt | 3 | 3 | B.1.1.348 | 0.002389 |
ORF1ab/nsp3 | 396 | F396L | Ttt | Ctt | 3 | 3 | B.1.1.519 | 0.000119 |
ORF1ab/nsp3 | 396 | F396F | ttT | ttC | 3 | 3 | B.1.2 | 0.000026 |
ORF1ab/nsp3 | 396 | F396L | ttT | ttA | 3 | 3 | B.1.398 | 0.008929 |
ORF1ab/nsp3 | 396 | F396del | TTT | --- | 3 | 3 | B.1.429 | 0.000071 |
ORF1ab/nsp3 | 396 | F396V | Ttt | Gtt | 3 | 3 | B.1.617.2 | 0.000011 |
ORF1ab/nsp3 | 396 | F396S | tTt | tCt | 3 | 3 | P.1.14 | 0.000143 |
ORF1ab/nsp3 | 396 | F396M | TtT | AtG | 2 | 2 | 0.111111 | |
ORF1ab/nsp3 | 396 | F396F | ttT | ttC | 2 | 2 | 0.111111 | |
ORF1ab/nsp3 | 396 | F396P | TTT | CCG | 1 | 2 | 0.055556 | |
ORF1ab/nsp3 | 396 | F396P | TTt | CCt | 1 | 2 | 0.055556 | |
ORF1ab/nsp3 | 396 | F396S | tTt | tCt | 1 | 2 | 0.055556 | |
ORF1ab/nsp3 | 396 | F396S | tTT | tCG | 1 | 2 | 0.055556 | |
ORF1ab/nsp3 | 396 | F396M | TtT | AtG | 2 | 2 | All | 0 |
ORF1ab/nsp3 | 396 | F396P | TTT | CCG | 1 | 2 | All | 0 |
ORF1ab/nsp3 | 396 | F396P | TTt | CCt | 1 | 2 | All | 0 |
ORF1ab/nsp3 | 396 | F396L | Ttt | Ctt | 1 | 2 | AY.102 | 0.000027 |
ORF1ab/nsp3 | 396 | F396L | ttT | ttG | 1 | 2 | AY.102 | 0.000027 |
ORF1ab/nsp3 | 396 | F396F | ttT | ttC | 2 | 2 | AY.103 | 0.000012 |
ORF1ab/nsp3 | 396 | F396L | Ttt | Ctt | 2 | 2 | AY.119 | 0.000071 |
ORF1ab/nsp3 | 396 | F396F | ttT | ttC | 2 | 2 | AY.25 | 0.000012 |
ORF1ab/nsp3 | 396 | F396L | Ttt | Ctt | 2 | 2 | AY.25 | 0.000012 |
ORF1ab/nsp3 | 396 | F396L | Ttt | Ctt | 2 | 2 | AY.29 | 0.000032 |
ORF1ab/nsp3 | 396 | F396L | Ttt | Ctt | 2 | 2 | AY.3 | 0.00002 |
ORF1ab/nsp3 | 396 | F396del | TTT | --- | 2 | 2 | AY.3 | 0.00002 |
ORF1ab/nsp3 | 396 | F396C | tTt | tGt | 2 | 2 | AY.39 | 0.000049 |
ORF1ab/nsp3 | 396 | F396S | tTt | tCt | 2 | 2 | AY.4.2 | 0.000043 |
ORF1ab/nsp3 | 396 | F396S | tTt | tCt | 2 | 2 | AY.44 | 0.000012 |
ORF1ab/nsp3 | 396 | F396S | tTt | tCt | 2 | 2 | AY.5 | 0.000041 |
ORF1ab/nsp3 | 396 | F396S | tTt | tCt | 2 | 2 | AY.75 | 0.000112 |
ORF1ab/nsp3 | 396 | F396L | Ttt | Ctt | 2 | 2 | AY.75 | 0.000112 |
ORF1ab/nsp3 | 396 | F396S | tTt | tCt | 2 | 2 | AY.99.2 | 0.000184 |
ORF1ab/nsp3 | 396 | F396C | tTt | tGt | 2 | 2 | B | 0.000256 |
ORF1ab/nsp3 | 396 | F396del1 | Ttt | -tt | 1 | 2 | B.1 | 0.000009 |
ORF1ab/nsp3 | 396 | F396del1 | ttT | tt- | 1 | 2 | B.1 | 0.000009 |
ORF1ab/nsp3 | 396 | F396L | Ttt | Ctt | 2 | 2 | B.1.1 | 0.000036 |
ORF1ab/nsp3 | 396 | F396del | TTT | --- | 2 | 2 | B.1.1.200 | 0.014925 |
ORF1ab/nsp3 | 396 | F396F | ttT | ttC | 2 | 2 | B.1.1.214 | 0.000111 |
ORF1ab/nsp3 | 396 | F396L | Ttt | Ctt | 2 | 2 | B.1.1.284 | 0.000215 |
ORF1ab/nsp3 | 396 | F396F | ttT | ttC | 2 | 2 | B.1.177 | 0.000026 |
ORF1ab/nsp3 | 396 | F396del1 | Ttt | -tt | 2 | 2 | B.1.2 | 0.000018 |
ORF1ab/nsp3 | 396 | F396del | TTT | --- | 2 | 2 | B.1.223 | 0.005556 |
ORF1ab/nsp3 | 396 | F396C | tTt | tGt | 2 | 2 | B.1.234 | 0.000264 |
ORF1ab/nsp3 | 396 | F396del | TTT | --- | 2 | 2 | B.1.526 | 0.000047 |
ORF1ab/nsp3 | 396 | F396del | TTT | --- | 2 | 2 | B.1.621 | 0.000177 |
ORF1ab/nsp3 | 396 | F396F | ttT | ttC | 2 | 2 | D.2 | 0.00015 |
ORF1ab/nsp3 | 396 | F396del | TTT | --- | 2 | 2 | P.1.12 | 0.000968 |
ORF1ab/nsp3 | 396 | F396Q | TTT | CAG | 1 | 1 | 0.055556 | |
ORF1ab/nsp3 | 396 | F396Y | tTt | tAt | 1 | 1 | 0.055556 | |
ORF1ab/nsp3 | 396 | F396X | tTT | tAG | 1 | 1 | 0.055556 | |
ORF1ab/nsp3 | 396 | F396H | TTt | CAt | 1 | 1 | 0.055556 | |
ORF1ab/nsp3 | 396 | F396H | TTt | CAt | 1 | 1 | All | 0 |
ORF1ab/nsp3 | 396 | F396X | tTT | tAG | 1 | 1 | All | 0 |
ORF1ab/nsp3 | 396 | F396Q | TTT | CAG | 1 | 1 | All | 0 |
ORF1ab/nsp3 | 396 | F396N | TTt | AAt | 1 | 1 | All | 0 |
ORF1ab/nsp3 | 396 | F396L | ttT | ttA | 1 | 1 | AY.103 | 0.000006 |
ORF1ab/nsp3 | 396 | F396del | TTT | --- | 1 | 1 | AY.121 | 0.000135 |
ORF1ab/nsp3 | 396 | F396F | ttT | ttC | 1 | 1 | AY.13 | 0.000161 |
ORF1ab/nsp3 | 396 | F396L | Ttt | Ctt | 1 | 1 | AY.16.1 | 0.00047 |
ORF1ab/nsp3 | 396 | F396del | TTT | --- | 1 | 1 | AY.19 | 0.00114 |
ORF1ab/nsp3 | 396 | F396del | TTT | --- | 1 | 1 | AY.20 | 0.000039 |
ORF1ab/nsp3 | 396 | F396L | Ttt | Ctt | 1 | 1 | AY.20 | 0.000039 |
ORF1ab/nsp3 | 396 | F396L | Ttt | Ctt | 1 | 1 | AY.23 | 0.00007 |
ORF1ab/nsp3 | 396 | F396del | TTT | --- | 1 | 1 | AY.25 | 0.000006 |
ORF1ab/nsp3 | 396 | F396S | tTt | tCt | 1 | 1 | AY.25 | 0.000006 |
ORF1ab/nsp3 | 396 | F396del1 | Ttt | -tt | 1 | 1 | AY.26 | 0.000028 |
ORF1ab/nsp3 | 396 | F396S | tTt | tCt | 1 | 1 | AY.27 | 0.000065 |
ORF1ab/nsp3 | 396 | F396del | TTT | --- | 1 | 1 | AY.29 | 0.000016 |
ORF1ab/nsp3 | 396 | F396S | tTt | tCt | 1 | 1 | AY.29.1 | 0.000221 |
ORF1ab/nsp3 | 396 | F396del | TTT | --- | 1 | 1 | AY.3.1 | 0.000085 |
ORF1ab/nsp3 | 396 | F396L | Ttt | Ctt | 1 | 1 | AY.33 | 0.000067 |
ORF1ab/nsp3 | 396 | F396del | TTT | --- | 1 | 1 | AY.33 | 0.000067 |
ORF1ab/nsp3 | 396 | F396Y | tTt | tAt | 1 | 1 | AY.33 | 0.000067 |
ORF1ab/nsp3 | 396 | F396V | Ttt | Gtt | 1 | 1 | AY.34 | 0.000097 |
ORF1ab/nsp3 | 396 | F396L | Ttt | Ctt | 1 | 1 | AY.35 | 0.000233 |
ORF1ab/nsp3 | 396 | F396S | tTt | tCt | 1 | 1 | AY.37 | 0.000316 |
ORF1ab/nsp3 | 396 | F396F | ttT | ttC | 1 | 1 | AY.39 | 0.000025 |
ORF1ab/nsp3 | 396 | F396N | TTt | AAt | 1 | 1 | AY.39 | 0.000025 |
ORF1ab/nsp3 | 396 | F396C | tTt | tGt | 1 | 1 | AY.4 | 0.000002 |
ORF1ab/nsp3 | 396 | F396S | tTt | tCt | 1 | 1 | AY.42 | 0.00004 |
ORF1ab/nsp3 | 396 | F396del1 | Ttt | -tt | 1 | 1 | AY.44 | 0.000006 |
ORF1ab/nsp3 | 396 | F396S | tTt | tCt | 1 | 1 | AY.45 | 0.000122 |
ORF1ab/nsp3 | 396 | F396del | TTT | --- | 1 | 1 | AY.46 | 0.000104 |
ORF1ab/nsp3 | 396 | F396del | TTT | --- | 1 | 1 | AY.46.2 | 0.000635 |
ORF1ab/nsp3 | 396 | F396del | TTT | --- | 1 | 1 | AY.5 | 0.000021 |
ORF1ab/nsp3 | 396 | F396L | Ttt | Ctt | 1 | 1 | AY.5 | 0.000021 |
ORF1ab/nsp3 | 396 | F396L | Ttt | Ctt | 1 | 1 | AY.59 | 0.00053 |
ORF1ab/nsp3 | 396 | F396L | Ttt | Ctt | 1 | 1 | AY.62 | 0.000436 |
ORF1ab/nsp3 | 396 | F396Y | tTt | tAt | 1 | 1 | AY.84 | 0.000437 |
ORF1ab/nsp3 | 396 | F396del | TTT | --- | 1 | 1 | AY.98.1 | 0.000048 |
ORF1ab/nsp3 | 396 | F396S | tTt | tCt | 1 | 1 | B.1 | 0.000009 |
ORF1ab/nsp3 | 396 | F396C | tTt | tGt | 1 | 1 | B.1.1 | 0.000018 |
ORF1ab/nsp3 | 396 | F396del | TTT | --- | 1 | 1 | B.1.1.135 | 0.004695 |
ORF1ab/nsp3 | 396 | F396del | TTT | --- | 1 | 1 | B.1.1.192 | 0.002309 |
ORF1ab/nsp3 | 396 | F396I | Ttt | Att | 1 | 1 | B.1.1.216 | 0.00089 |
ORF1ab/nsp3 | 396 | F396del | TTT | --- | 1 | 1 | B.1.1.221 | 0.010101 |
ORF1ab/nsp3 | 396 | F396del | TTT | --- | 1 | 1 | B.1.1.25 | 0.000569 |
ORF1ab/nsp3 | 396 | F396S | tTt | tCt | 1 | 1 | B.1.1.265 | 0.003155 |
ORF1ab/nsp3 | 396 | F396del | TTT | --- | 1 | 1 | B.1.1.294 | 0.001266 |
ORF1ab/nsp3 | 396 | F396del | TTT | --- | 1 | 1 | B.1.1.315 | 0.008475 |
ORF1ab/nsp3 | 396 | F396del | TTT | --- | 1 | 1 | B.1.1.33 | 0.000421 |
ORF1ab/nsp3 | 396 | F396del | TTT | --- | 1 | 1 | B.1.1.416 | 0.000905 |
ORF1ab/nsp3 | 396 | F396V | Ttt | Gtt | 1 | 1 | B.1.1.448 | 0.002033 |
ORF1ab/nsp3 | 396 | F396L | ttT | ttA | 1 | 1 | B.1.1.450 | 0.034483 |
ORF1ab/nsp3 | 396 | F396del | TTT | --- | 1 | 1 | B.1.1.519 | 0.00004 |
ORF1ab/nsp3 | 396 | F396I | Ttt | Att | 1 | 1 | B.1.1.7 | 0.000001 |
ORF1ab/nsp3 | 396 | F396V | Ttt | Gtt | 1 | 1 | B.1.1.7 | 0.000001 |
ORF1ab/nsp3 | 396 | F396del | TTT | --- | 1 | 1 | B.1.110 | 0.004525 |
ORF1ab/nsp3 | 396 | F396S | tTt | tCt | 1 | 1 | B.1.110.3 | 0.000718 |
ORF1ab/nsp3 | 396 | F396L | Ttt | Ctt | 1 | 1 | B.1.128 | 0.000635 |
ORF1ab/nsp3 | 396 | F396del | TTT | --- | 1 | 1 | B.1.140 | 0.018868 |
ORF1ab/nsp3 | 396 | F396del | TTT | --- | 1 | 1 | B.1.177 | 0.000013 |
ORF1ab/nsp3 | 396 | F396L | Ttt | Ctt | 1 | 1 | B.1.177 | 0.000013 |
ORF1ab/nsp3 | 396 | F396F | ttT | ttC | 1 | 1 | B.1.177.2 | 0.004545 |
ORF1ab/nsp3 | 396 | F396del | TTT | --- | 1 | 1 | B.1.177.4 | 0.000211 |
ORF1ab/nsp3 | 396 | F396del | TTT | --- | 1 | 1 | B.1.177.57 | 0.000281 |
ORF1ab/nsp3 | 396 | F396del1 | Ttt | -tt | 1 | 1 | B.1.206 | 0.000816 |
ORF1ab/nsp3 | 396 | F396del | TTT | --- | 1 | 1 | B.1.221 | 0.000071 |
ORF1ab/nsp3 | 396 | F396Y | tTt | tAt | 1 | 1 | B.1.243 | 0.00007 |
ORF1ab/nsp3 | 396 | F396I | Ttt | Att | 1 | 1 | B.1.258.17 | 0.000104 |
ORF1ab/nsp3 | 396 | F396S | tTt | tCt | 1 | 1 | B.1.260 | 0.003344 |
ORF1ab/nsp3 | 396 | F396del | TTT | --- | 1 | 1 | B.1.279 | 0.000514 |
ORF1ab/nsp3 | 396 | F396del | TTT | --- | 1 | 1 | B.1.36 | 0.000146 |
ORF1ab/nsp3 | 396 | F396S | tTt | tCt | 1 | 1 | B.1.36 | 0.000146 |
ORF1ab/nsp3 | 396 | F396del | TTT | --- | 1 | 1 | B.1.36.18 | 0.00042 |
ORF1ab/nsp3 | 396 | F396L | Ttt | Ctt | 1 | 1 | B.1.369 | 0.000285 |
ORF1ab/nsp3 | 396 | F396del | TTT | --- | 1 | 1 | B.1.420 | 0.010417 |
ORF1ab/nsp3 | 396 | F396S | tTt | tCt | 1 | 1 | B.1.429 | 0.000024 |
ORF1ab/nsp3 | 396 | F396S | tTt | tCt | 1 | 1 | B.1.463 | 0.008065 |
ORF1ab/nsp3 | 396 | F396L | Ttt | Ctt | 1 | 1 | B.1.466.2 | 0.000391 |
ORF1ab/nsp3 | 396 | F396S | tTt | tCt | 1 | 1 | B.1.526 | 0.000024 |
ORF1ab/nsp3 | 396 | F396L | Ttt | Ctt | 1 | 1 | B.1.582 | 0.000491 |
ORF1ab/nsp3 | 396 | F396del | TTT | --- | 1 | 1 | B.1.595 | 0.000261 |
ORF1ab/nsp3 | 396 | F396C | tTt | tGt | 1 | 1 | B.1.596 | 0.000087 |
ORF1ab/nsp3 | 396 | F396S | tTt | tCt | 1 | 1 | B.1.617.1 | 0.000129 |
ORF1ab/nsp3 | 396 | F396L | Ttt | Ctt | 1 | 1 | B.1.617.1 | 0.000129 |
ORF1ab/nsp3 | 396 | F396F | ttT | ttC | 1 | 1 | B.1.617.2 | 0.000004 |
ORF1ab/nsp3 | 396 | F396S | tTt | tCt | 1 | 1 | B.1.617.2 | 0.000004 |
ORF1ab/nsp3 | 396 | F396L | Ttt | Ctt | 1 | 1 | B.1.621 | 0.000089 |
ORF1ab/nsp3 | 396 | F396del | TTT | --- | 1 | 1 | B.1.621.1 | 0.000506 |
ORF1ab/nsp3 | 396 | F396I | Ttt | Att | 1 | 1 | B.1.637 | 0.000073 |
ORF1ab/nsp3 | 396 | F396del | TTT | --- | 1 | 1 | B.34 | 0.013699 |
ORF1ab/nsp3 | 396 | F396del | TTT | --- | 1 | 1 | B.57 | 0.015152 |
ORF1ab/nsp3 | 396 | F396del | TTT | --- | 1 | 1 | C.37 | 0.000116 |
ORF1ab/nsp3 | 396 | F396del | TTT | --- | 1 | 1 | D.2 | 0.000075 |
ORF1ab/nsp3 | 396 | F396L | Ttt | Ctt | 1 | 1 | D.2 | 0.000075 |
ORF1ab/nsp3 | 396 | F396del | TTT | --- | 1 | 1 | N.6 | 0.007092 |
ORF1ab/nsp3 | 396 | F396F | ttT | ttC | 1 | 1 | P.1 | 0.000016 |
ORF1ab/nsp3 | 396 | F396L | Ttt | Ctt | 1 | 1 | P.1.1 | 0.000318 |
ORF1ab/nsp3 | 396 | F396del | TTT | --- | 1 | 1 | P.1.14 | 0.000048 |
ORF1ab/nsp3 | 396 | F396L | Ttt | Ctt | 1 | 1 | P.1.15 | 0.000232 |
ORF1ab/nsp3 | 396 | F396del | TTT | --- | 1 | 1 | R.1 | 0.00009 |
ORF1ab/nsp3 | 396 | F396del1 | Ttt | -tt | 1 | 1 | R.1 | 0.00009 |
ORF1ab/nsp3 | 396 | F396L | Ttt | Ctt | 1 | 1 | R.1 | 0.00009 |
ORF1ab/nsp3 | 396 | F396S | tTt | tCt | 1 | 1 | W.3 | 0.005263 |
CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk
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