CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF1ab/nsp3 : CodonNum = 396

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF1ab/nsp3396F396delF1214deldelTTT---27727713905-3907
ORF1ab/nsp3396F396SF1214SnonsyntTttCt2712700.996313905-3907
ORF1ab/nsp3396F396SF1214SnonsyntTTtCG27110.003690043905-3907
ORF1ab/nsp3396F396LF1214LnonsynTttCtt2171830.8433183905-3907
ORF1ab/nsp3396F396LF1214LnonsynttTttG217250.1152073905-3907
ORF1ab/nsp3396F396LF1214LnonsynttTttA21780.03686643905-3907
ORF1ab/nsp3396F396LF1214LnonsynTtTCtG21710.004608293905-3907
ORF1ab/nsp3396F396FF1214FsynttTttC868613905-3907
ORF1ab/nsp3396F396VF1214VnonsynTttGtt23190.8260873905-3907
ORF1ab/nsp3396F396VF1214VnonsynTtTGtG2320.08695653905-3907
ORF1ab/nsp3396F396VF1214VnonsynTtTGtC2320.08695653905-3907
ORF1ab/nsp3396F396IF1214InonsynTttAtt21190.9047623905-3907
ORF1ab/nsp3396F396IF1214InonsynTtTAtC2120.09523813905-3907
ORF1ab/nsp3396F396CF1214CnonsyntTttGt9913905-3907
ORF1ab/nsp3396F396del1F1214del1delTtt-tt870.8753905-3907
ORF1ab/nsp3396F396del1F1214del1delttTtt-810.1253905-3907
ORF1ab/nsp3396F396YF1214YnonsyntTttAt4413905-3907
ORF1ab/nsp3396F396del2F1214del2deltTTt--3313905-3907
ORF1ab/nsp3396F396MF1214MnonsynTtTAtG2213905-3907
ORF1ab/nsp3396F396PF1214PnonsynTTTCCG210.53905-3907
ORF1ab/nsp3396F396PF1214PnonsynTTtCCt210.53905-3907
ORF1ab/nsp3396F396NF1214NnonsynTTtAAt1113905-3907
ORF1ab/nsp3396F396QF1214QnonsynTTTCAG1113905-3907
ORF1ab/nsp3396F396HF1214HnonsynTTtCAt1113905-3907
ORF1ab/nsp3396F396XF1214XnonsyntTTtAG1113905-3907

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF1ab/nsp3396F396delTTT---277277All0.000053
ORF1ab/nsp3396F396StTttCt270271All0.000052
ORF1ab/nsp3396F396StTTtCG1271All0
ORF1ab/nsp3396F396LTttCtt183217All0.000035
ORF1ab/nsp3396F396LttTttG25217All0.000005
ORF1ab/nsp3396F396LttTttA8217All0.000002
ORF1ab/nsp3396F396LTtTCtG1217All0
ORF1ab/nsp3396F396StTttCt130130B.1.1770.001712
ORF1ab/nsp3396F396FttTttC8686All0.000016
ORF1ab/nsp3396F396LTttCtt6768B.1.1.70.00006
ORF1ab/nsp3396F396LttTttG168B.1.1.70.000001
ORF1ab/nsp3396F396delTTT---6060AY.40.000093
ORF1ab/nsp3396F396delTTT---5252B.1.1.4420.962963
ORF1ab/nsp3396F396StTttCt4040B.1.1.70.000036
ORF1ab/nsp3396F396delTTT---3333B.1.4270.001666
ORF1ab/nsp3396F396FttTttC2626AY.40.00004
ORF1ab/nsp3396F396VTttGtt1923All0.000004
ORF1ab/nsp3396F396VTtTGtC223All0
ORF1ab/nsp3396F396VTtTGtG223All0
ORF1ab/nsp3396F396StTttCt2323AY.290.000363
ORF1ab/nsp3396F396ITttAtt1921All0.000004
ORF1ab/nsp3396F396ITtTAtC221All0
ORF1ab/nsp3396F396FttTttC1919B.1.1.70.000017
ORF1ab/nsp3396F396LttTttG1518B.10.000137
ORF1ab/nsp3396F396LTttCtt218B.10.000018
ORF1ab/nsp3396F396LttTttA118B.10.000009
ORF1ab/nsp3396F396delTTT---1616C.36.30.009075
ORF1ab/nsp3396F396LTttCtt1212AY.99.20.001106
ORF1ab/nsp3396F396LTttCtt1111B.1.617.20.000041
ORF1ab/nsp3396F396LTttCtt810AY.40.000012
ORF1ab/nsp3396F396LttTttA210AY.40.000003
ORF1ab/nsp3396F396FttTttC1010B.1.1600.000312
ORF1ab/nsp3396F396ITttAtt1010B.1.617.20.000038
ORF1ab/nsp3396F396CtTttGt99All0.000002
ORF1ab/nsp3396F396del1Ttt-tt78All0.000001
ORF1ab/nsp3396F396del1ttTtt-18All0
ORF1ab/nsp3396F396LTttCtt88AY.1170.000676
ORF1ab/nsp3396F396StTttCt88AY.40.000012
ORF1ab/nsp3396F396StTttCt88AY.98.10.000387
ORF1ab/nsp3396F396delTTT---88B.1.1.70.000007
ORF1ab/nsp3396F396VTttGtt88B.1.6210.000708
ORF1ab/nsp3396F396delTTT---77B.1.20.000062
ORF1ab/nsp3396F396VTtTGtC260.111111
ORF1ab/nsp3396F396VTtTGtG260.111111
ORF1ab/nsp3396F396VTttGtt260.111111
ORF1ab/nsp3396F396FttTttC66AY.330.000401
ORF1ab/nsp3396F396delTTT---66AY.440.000037
ORF1ab/nsp3396F396StTttCt66AY.46.60.000433
ORF1ab/nsp3396F396delTTT---66B.1.110.30.00431
ORF1ab/nsp3396F396StTttCt66B.1.36.280.034483
ORF1ab/nsp3396F396LTttCtt66B.1.4290.000141
ORF1ab/nsp3396F396delTTT---66B.1.617.20.000023
ORF1ab/nsp3396F396LttTttG350.166667
ORF1ab/nsp3396F396LTtTCtG150.055556
ORF1ab/nsp3396F396LTttCtt150.055556
ORF1ab/nsp3396F396StTttCt55A0.001935
ORF1ab/nsp3396F396LTttCtt55AY.39.10.000198
ORF1ab/nsp3396F396LttTttG55AY.920.001436
ORF1ab/nsp3396F396delTTT---55B.10.000046
ORF1ab/nsp3396F396LTttCtt55B.1.20.000044
ORF1ab/nsp3396F396FttTttC55B.1.2100.010661
ORF1ab/nsp3396F396StTttCt55B.1.3510.000149
ORF1ab/nsp3396F396delTTT---55B.1.5960.000436
ORF1ab/nsp3396F396delTTT---55P.10.000079
ORF1ab/nsp3396F396ITttAtt240.111111
ORF1ab/nsp3396F396ITtTAtC240.111111
ORF1ab/nsp3396F396YtTttAt44All0.000001
ORF1ab/nsp3396F396delTTT---44AY.390.000099
ORF1ab/nsp3396F396LTttCtt44AY.430.000018
ORF1ab/nsp3396F396LTttCtt44AY.440.000024
ORF1ab/nsp3396F396StTttCt44AY.680.001095
ORF1ab/nsp3396F396delTTT---44B.1.10.000073
ORF1ab/nsp3396F396StTttCt44B.1.20.000035
ORF1ab/nsp3396F396LTttCtt44P.10.000063
ORF1ab/nsp3396F396del2tTTt--33All0.000001
ORF1ab/nsp3396F396delTTT---33AY.230.000209
ORF1ab/nsp3396F396del2tTTt--33AY.250.000018
ORF1ab/nsp3396F396delTTT---33AY.260.000085
ORF1ab/nsp3396F396LTttCtt33AY.370.000948
ORF1ab/nsp3396F396VTttGtt33AY.40.000005
ORF1ab/nsp3396F396ITttAtt33AY.430.000013
ORF1ab/nsp3396F396LTttCtt33AY.98.10.000145
ORF1ab/nsp3396F396LTttCtt33B.1.1.3480.002389
ORF1ab/nsp3396F396LTttCtt33B.1.1.5190.000119
ORF1ab/nsp3396F396FttTttC33B.1.20.000026
ORF1ab/nsp3396F396LttTttA33B.1.3980.008929
ORF1ab/nsp3396F396delTTT---33B.1.4290.000071
ORF1ab/nsp3396F396VTttGtt33B.1.617.20.000011
ORF1ab/nsp3396F396StTttCt33P.1.140.000143
ORF1ab/nsp3396F396MTtTAtG220.111111
ORF1ab/nsp3396F396FttTttC220.111111
ORF1ab/nsp3396F396PTTTCCG120.055556
ORF1ab/nsp3396F396PTTtCCt120.055556
ORF1ab/nsp3396F396StTttCt120.055556
ORF1ab/nsp3396F396StTTtCG120.055556
ORF1ab/nsp3396F396MTtTAtG22All0
ORF1ab/nsp3396F396PTTTCCG12All0
ORF1ab/nsp3396F396PTTtCCt12All0
ORF1ab/nsp3396F396LTttCtt12AY.1020.000027
ORF1ab/nsp3396F396LttTttG12AY.1020.000027
ORF1ab/nsp3396F396FttTttC22AY.1030.000012
ORF1ab/nsp3396F396LTttCtt22AY.1190.000071
ORF1ab/nsp3396F396FttTttC22AY.250.000012
ORF1ab/nsp3396F396LTttCtt22AY.250.000012
ORF1ab/nsp3396F396LTttCtt22AY.290.000032
ORF1ab/nsp3396F396LTttCtt22AY.30.00002
ORF1ab/nsp3396F396delTTT---22AY.30.00002
ORF1ab/nsp3396F396CtTttGt22AY.390.000049
ORF1ab/nsp3396F396StTttCt22AY.4.20.000043
ORF1ab/nsp3396F396StTttCt22AY.440.000012
ORF1ab/nsp3396F396StTttCt22AY.50.000041
ORF1ab/nsp3396F396StTttCt22AY.750.000112
ORF1ab/nsp3396F396LTttCtt22AY.750.000112
ORF1ab/nsp3396F396StTttCt22AY.99.20.000184
ORF1ab/nsp3396F396CtTttGt22B0.000256
ORF1ab/nsp3396F396del1Ttt-tt12B.10.000009
ORF1ab/nsp3396F396del1ttTtt-12B.10.000009
ORF1ab/nsp3396F396LTttCtt22B.1.10.000036
ORF1ab/nsp3396F396delTTT---22B.1.1.2000.014925
ORF1ab/nsp3396F396FttTttC22B.1.1.2140.000111
ORF1ab/nsp3396F396LTttCtt22B.1.1.2840.000215
ORF1ab/nsp3396F396FttTttC22B.1.1770.000026
ORF1ab/nsp3396F396del1Ttt-tt22B.1.20.000018
ORF1ab/nsp3396F396delTTT---22B.1.2230.005556
ORF1ab/nsp3396F396CtTttGt22B.1.2340.000264
ORF1ab/nsp3396F396delTTT---22B.1.5260.000047
ORF1ab/nsp3396F396delTTT---22B.1.6210.000177
ORF1ab/nsp3396F396FttTttC22D.20.00015
ORF1ab/nsp3396F396delTTT---22P.1.120.000968
ORF1ab/nsp3396F396QTTTCAG110.055556
ORF1ab/nsp3396F396YtTttAt110.055556
ORF1ab/nsp3396F396XtTTtAG110.055556
ORF1ab/nsp3396F396HTTtCAt110.055556
ORF1ab/nsp3396F396HTTtCAt11All0
ORF1ab/nsp3396F396XtTTtAG11All0
ORF1ab/nsp3396F396QTTTCAG11All0
ORF1ab/nsp3396F396NTTtAAt11All0
ORF1ab/nsp3396F396LttTttA11AY.1030.000006
ORF1ab/nsp3396F396delTTT---11AY.1210.000135
ORF1ab/nsp3396F396FttTttC11AY.130.000161
ORF1ab/nsp3396F396LTttCtt11AY.16.10.00047
ORF1ab/nsp3396F396delTTT---11AY.190.00114
ORF1ab/nsp3396F396delTTT---11AY.200.000039
ORF1ab/nsp3396F396LTttCtt11AY.200.000039
ORF1ab/nsp3396F396LTttCtt11AY.230.00007
ORF1ab/nsp3396F396delTTT---11AY.250.000006
ORF1ab/nsp3396F396StTttCt11AY.250.000006
ORF1ab/nsp3396F396del1Ttt-tt11AY.260.000028
ORF1ab/nsp3396F396StTttCt11AY.270.000065
ORF1ab/nsp3396F396delTTT---11AY.290.000016
ORF1ab/nsp3396F396StTttCt11AY.29.10.000221
ORF1ab/nsp3396F396delTTT---11AY.3.10.000085
ORF1ab/nsp3396F396LTttCtt11AY.330.000067
ORF1ab/nsp3396F396delTTT---11AY.330.000067
ORF1ab/nsp3396F396YtTttAt11AY.330.000067
ORF1ab/nsp3396F396VTttGtt11AY.340.000097
ORF1ab/nsp3396F396LTttCtt11AY.350.000233
ORF1ab/nsp3396F396StTttCt11AY.370.000316
ORF1ab/nsp3396F396FttTttC11AY.390.000025
ORF1ab/nsp3396F396NTTtAAt11AY.390.000025
ORF1ab/nsp3396F396CtTttGt11AY.40.000002
ORF1ab/nsp3396F396StTttCt11AY.420.00004
ORF1ab/nsp3396F396del1Ttt-tt11AY.440.000006
ORF1ab/nsp3396F396StTttCt11AY.450.000122
ORF1ab/nsp3396F396delTTT---11AY.460.000104
ORF1ab/nsp3396F396delTTT---11AY.46.20.000635
ORF1ab/nsp3396F396delTTT---11AY.50.000021
ORF1ab/nsp3396F396LTttCtt11AY.50.000021
ORF1ab/nsp3396F396LTttCtt11AY.590.00053
ORF1ab/nsp3396F396LTttCtt11AY.620.000436
ORF1ab/nsp3396F396YtTttAt11AY.840.000437
ORF1ab/nsp3396F396delTTT---11AY.98.10.000048
ORF1ab/nsp3396F396StTttCt11B.10.000009
ORF1ab/nsp3396F396CtTttGt11B.1.10.000018
ORF1ab/nsp3396F396delTTT---11B.1.1.1350.004695
ORF1ab/nsp3396F396delTTT---11B.1.1.1920.002309
ORF1ab/nsp3396F396ITttAtt11B.1.1.2160.00089
ORF1ab/nsp3396F396delTTT---11B.1.1.2210.010101
ORF1ab/nsp3396F396delTTT---11B.1.1.250.000569
ORF1ab/nsp3396F396StTttCt11B.1.1.2650.003155
ORF1ab/nsp3396F396delTTT---11B.1.1.2940.001266
ORF1ab/nsp3396F396delTTT---11B.1.1.3150.008475
ORF1ab/nsp3396F396delTTT---11B.1.1.330.000421
ORF1ab/nsp3396F396delTTT---11B.1.1.4160.000905
ORF1ab/nsp3396F396VTttGtt11B.1.1.4480.002033
ORF1ab/nsp3396F396LttTttA11B.1.1.4500.034483
ORF1ab/nsp3396F396delTTT---11B.1.1.5190.00004
ORF1ab/nsp3396F396ITttAtt11B.1.1.70.000001
ORF1ab/nsp3396F396VTttGtt11B.1.1.70.000001
ORF1ab/nsp3396F396delTTT---11B.1.1100.004525
ORF1ab/nsp3396F396StTttCt11B.1.110.30.000718
ORF1ab/nsp3396F396LTttCtt11B.1.1280.000635
ORF1ab/nsp3396F396delTTT---11B.1.1400.018868
ORF1ab/nsp3396F396delTTT---11B.1.1770.000013
ORF1ab/nsp3396F396LTttCtt11B.1.1770.000013
ORF1ab/nsp3396F396FttTttC11B.1.177.20.004545
ORF1ab/nsp3396F396delTTT---11B.1.177.40.000211
ORF1ab/nsp3396F396delTTT---11B.1.177.570.000281
ORF1ab/nsp3396F396del1Ttt-tt11B.1.2060.000816
ORF1ab/nsp3396F396delTTT---11B.1.2210.000071
ORF1ab/nsp3396F396YtTttAt11B.1.2430.00007
ORF1ab/nsp3396F396ITttAtt11B.1.258.170.000104
ORF1ab/nsp3396F396StTttCt11B.1.2600.003344
ORF1ab/nsp3396F396delTTT---11B.1.2790.000514
ORF1ab/nsp3396F396delTTT---11B.1.360.000146
ORF1ab/nsp3396F396StTttCt11B.1.360.000146
ORF1ab/nsp3396F396delTTT---11B.1.36.180.00042
ORF1ab/nsp3396F396LTttCtt11B.1.3690.000285
ORF1ab/nsp3396F396delTTT---11B.1.4200.010417
ORF1ab/nsp3396F396StTttCt11B.1.4290.000024
ORF1ab/nsp3396F396StTttCt11B.1.4630.008065
ORF1ab/nsp3396F396LTttCtt11B.1.466.20.000391
ORF1ab/nsp3396F396StTttCt11B.1.5260.000024
ORF1ab/nsp3396F396LTttCtt11B.1.5820.000491
ORF1ab/nsp3396F396delTTT---11B.1.5950.000261
ORF1ab/nsp3396F396CtTttGt11B.1.5960.000087
ORF1ab/nsp3396F396StTttCt11B.1.617.10.000129
ORF1ab/nsp3396F396LTttCtt11B.1.617.10.000129
ORF1ab/nsp3396F396FttTttC11B.1.617.20.000004
ORF1ab/nsp3396F396StTttCt11B.1.617.20.000004
ORF1ab/nsp3396F396LTttCtt11B.1.6210.000089
ORF1ab/nsp3396F396delTTT---11B.1.621.10.000506
ORF1ab/nsp3396F396ITttAtt11B.1.6370.000073
ORF1ab/nsp3396F396delTTT---11B.340.013699
ORF1ab/nsp3396F396delTTT---11B.570.015152
ORF1ab/nsp3396F396delTTT---11C.370.000116
ORF1ab/nsp3396F396delTTT---11D.20.000075
ORF1ab/nsp3396F396LTttCtt11D.20.000075
ORF1ab/nsp3396F396delTTT---11N.60.007092
ORF1ab/nsp3396F396FttTttC11P.10.000016
ORF1ab/nsp3396F396LTttCtt11P.1.10.000318
ORF1ab/nsp3396F396delTTT---11P.1.140.000048
ORF1ab/nsp3396F396LTttCtt11P.1.150.000232
ORF1ab/nsp3396F396delTTT---11R.10.00009
ORF1ab/nsp3396F396del1Ttt-tt11R.10.00009
ORF1ab/nsp3396F396LTttCtt11R.10.00009
ORF1ab/nsp3396F396StTttCt11W.30.005263