CoV-GLUEGenomeCountriesLineagesMutationsInsertionsDeletionsUpdated:

CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF1ab/nsp3 : CodonNum = 395

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF1ab/nsp3395P395LP1213LnonsyncCacTa424141500.9785433902-3904
ORF1ab/nsp3395P395LP1213LnonsynCCaTTa4241890.02098563902-3904
ORF1ab/nsp3395P395LP1213LnonsyncCAcTG424110.0002357933902-3904
ORF1ab/nsp3395P395LP1213LnonsynCCATTG424110.0002357933902-3904
ORF1ab/nsp3395P395SP1213SnonsynCcaTca135813560.9985273902-3904
ORF1ab/nsp3395P395SP1213SnonsynCcATcG135810.0007363773902-3904
ORF1ab/nsp3395P395SP1213SnonsynCcATcT135810.0007363773902-3904
ORF1ab/nsp3395P395PP1213PsynccAccG11618230.7088723902-3904
ORF1ab/nsp3395P395PP1213PsynccAccT11612410.207583902-3904
ORF1ab/nsp3395P395PP1213PsynccAccC1161970.08354873902-3904
ORF1ab/nsp3395P395delP1213deldelCCA---22822813902-3904
ORF1ab/nsp3395P395TP1213TnonsynCcaAca757513902-3904
ORF1ab/nsp3395P395QP1213QnonsyncCacAa303013902-3904
ORF1ab/nsp3395P395AP1213AnonsynCcaGca8813902-3904
ORF1ab/nsp3395P395RP1213RnonsyncCacGa6613902-3904
ORF1ab/nsp3395P395XP1213XnonsynCCaTAa3313902-3904
ORF1ab/nsp3395P395del1P1213del1delCca-ca3313902-3904
ORF1ab/nsp3395P395IP1213InonsynCCAATT2213902-3904

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF1ab/nsp3395P395LcCacTa41504241All0.000794
ORF1ab/nsp3395P395LCCaTTa894241All0.000017
ORF1ab/nsp3395P395LcCAcTG14241All0
ORF1ab/nsp3395P395LCCATTG14241All0
ORF1ab/nsp3395P395SCcaTca13561358All0.000259
ORF1ab/nsp3395P395SCcATcG11358All0
ORF1ab/nsp3395P395SCcATcT11358All0
ORF1ab/nsp3395P395PccAccG8231161All0.000157
ORF1ab/nsp3395P395PccAccT2411161All0.000046
ORF1ab/nsp3395P395PccAccC971161All0.000019
ORF1ab/nsp3395P395LcCacTa755773B.1.1.70.000676
ORF1ab/nsp3395P395LCCaTTa18773B.1.1.70.000016
ORF1ab/nsp3395P395LcCacTa288288B.1.20.002536
ORF1ab/nsp3395P395LcCacTa286286AY.250.00172
ORF1ab/nsp3395P395LcCacTa275275B.1.617.20.001035
ORF1ab/nsp3395P395LcCacTa252252AY.40.000392
ORF1ab/nsp3395P395PccAccG204248B.1.1.70.000183
ORF1ab/nsp3395P395PccAccT34248B.1.1.70.00003
ORF1ab/nsp3395P395PccAccC10248B.1.1.70.000009
ORF1ab/nsp3395P395LcCacTa244244P.10.003844
ORF1ab/nsp3395P395delCCA---228228All0.000044
ORF1ab/nsp3395P395SCcaTca200200B.1.1.70.000179
ORF1ab/nsp3395P395PccAccG192195AY.430.000851
ORF1ab/nsp3395P395PccAccT2195AY.430.000009
ORF1ab/nsp3395P395PccAccC1195AY.430.000004
ORF1ab/nsp3395P395LcCacTa173173B.1.1770.002278
ORF1ab/nsp3395P395LcCacTa141141AY.430.000625
ORF1ab/nsp3395P395LcCacTa136136B.1.4290.0032
ORF1ab/nsp3395P395LcCacTa73125B.1.3510.00217
ORF1ab/nsp3395P395LCCaTTa52125B.1.3510.001546
ORF1ab/nsp3395P395SCcaTca109109AY.250.000656
ORF1ab/nsp3395P395SCcaTca102102B.1.617.20.000384
ORF1ab/nsp3395P395LcCacTa101101B.1.4270.0051
ORF1ab/nsp3395P395SCcaTca9696AY.440.000584
ORF1ab/nsp3395P395SCcaTca9595AY.40.000148
ORF1ab/nsp3395P395PccAccG9292B.1.1.4340.032067
ORF1ab/nsp3395P395LcCacTa8484B.1.10.001524
ORF1ab/nsp3395P395PccAccT5683AY.40.000087
ORF1ab/nsp3395P395PccAccG2183AY.40.000033
ORF1ab/nsp3395P395PccAccC683AY.40.000009
ORF1ab/nsp3395P395TCcaAca7575All0.000014
ORF1ab/nsp3395P395SCcaTca7474B.1.3510.0022
ORF1ab/nsp3395P395LcCacTa7070AY.30.000696
ORF1ab/nsp3395P395PccAccC5868AY.30.000577
ORF1ab/nsp3395P395PccAccG768AY.30.00007
ORF1ab/nsp3395P395PccAccT368AY.30.00003
ORF1ab/nsp3395P395LcCacTa6767AY.440.000408
ORF1ab/nsp3395P395PccAccG3866B.1.617.20.000143
ORF1ab/nsp3395P395PccAccT2666B.1.617.20.000098
ORF1ab/nsp3395P395PccAccC266B.1.617.20.000008
ORF1ab/nsp3395P395PccAccT5757B.1.6351
ORF1ab/nsp3395P395LcCacTa5656AY.1030.000348
ORF1ab/nsp3395P395LcCacTa5455B.10.000495
ORF1ab/nsp3395P395LCCaTTa155B.10.000009
ORF1ab/nsp3395P395SCcaTca5555B.1.20.000484
ORF1ab/nsp3395P395LcCacTa5454AY.4.20.001171
ORF1ab/nsp3395P395SCcaTca5353B.1.360.007733
ORF1ab/nsp3395P395PccAccG5353B.1.4270.002676
ORF1ab/nsp3395P395delCCA---5252B.1.1.4420.962963
ORF1ab/nsp3395P395LcCacTa4242B.1.2430.002923
ORF1ab/nsp3395P395SCcaTca3939AY.430.000173
ORF1ab/nsp3395P395LcCacTa3636B.1.1600.001123
ORF1ab/nsp3395P395LcCacTa3434AY.46.40.005593
ORF1ab/nsp3395P395LcCacTa3434B.1.3110.009336
ORF1ab/nsp3395P395SCcaTca3434B.1.4270.001717
ORF1ab/nsp3395P395delCCA---3333B.1.4270.001666
ORF1ab/nsp3395P395QcCacAa3030All0.000006
ORF1ab/nsp3395P395LcCacTa3030AY.1020.000795
ORF1ab/nsp3395P395PccAccG2130AY.440.000128
ORF1ab/nsp3395P395PccAccT930AY.440.000055
ORF1ab/nsp3395P395LcCacTa2929B.1.4970.009128
ORF1ab/nsp3395P395LcCacTa2929P.1.140.001386
ORF1ab/nsp3395P395TCcaAca2828AY.40.000044
ORF1ab/nsp3395P395SCcaTca2828AY.980.002212
ORF1ab/nsp3395P395LcCacTa1527B.1.466.20.005869
ORF1ab/nsp3395P395LCCaTTa1227B.1.466.20.004695
ORF1ab/nsp3395P395LcCacTa2626P.1.150.006041
ORF1ab/nsp3395P395SCcaTca2626P.1.170.004206
ORF1ab/nsp3395P395PccAccG2425B.1.20.000211
ORF1ab/nsp3395P395PccAccT125B.1.20.000009
ORF1ab/nsp3395P395LcCacTa2424AY.1180.001504
ORF1ab/nsp3395P395LcCacTa2424AY.1200.000892
ORF1ab/nsp3395P395SCcaTca2222AY.390.000544
ORF1ab/nsp3395P395PccAccG1921AY.250.000114
ORF1ab/nsp3395P395PccAccC121AY.250.000006
ORF1ab/nsp3395P395PccAccT121AY.250.000006
ORF1ab/nsp3395P395LcCacTa2121AY.470.000653
ORF1ab/nsp3395P395LcCacTa2121B.1.177.120.003186
ORF1ab/nsp3395P395SCcaTca2020AY.1030.000124
ORF1ab/nsp3395P395PccAccG1920AY.1030.000118
ORF1ab/nsp3395P395PccAccT120AY.1030.000006
ORF1ab/nsp3395P395LcCacTa2020AY.260.000566
ORF1ab/nsp3395P395LcCacTa1919B.1.6340.065068
ORF1ab/nsp3395P395LcCacTa1818AY.1000.000828
ORF1ab/nsp3395P395LcCacTa1818AY.1130.002563
ORF1ab/nsp3395P395LcCacTa1818AY.390.000445
ORF1ab/nsp3395P395SCcaTca1818AY.590.009534
ORF1ab/nsp3395P395SCcaTca1818B.1.466.20.007042
ORF1ab/nsp3395P395SCcaTca1717AY.290.000268
ORF1ab/nsp3395P395LcCacTa1717B.1.1.5190.000675
ORF1ab/nsp3395P395SCcaTca1717B.1.5250.001924
ORF1ab/nsp3395P395LcCacTa1717P.1.160.00636
ORF1ab/nsp3395P395LcCacTa1616AY.750.000896
ORF1ab/nsp3395P395SCcaTca1616B.1.10.00029
ORF1ab/nsp3395P395SCcaTca1616B.1.5260.000376
ORF1ab/nsp3395P395delCCA---1616C.36.30.009075
ORF1ab/nsp3395P395LcCacTa1414AY.290.000221
ORF1ab/nsp3395P395delCCA---1414AY.40.000022
ORF1ab/nsp3395P395SCcaTca1414B.1.5820.006869
ORF1ab/nsp3395P395LcCacTa1414P.20.002613
ORF1ab/nsp3395P395LcCacTa1313AY.50.000268
ORF1ab/nsp3395P395SCcaTca1212AY.1180.000752
ORF1ab/nsp3395P395LcCacTa1212AY.980.000948
ORF1ab/nsp3395P395SCcaTca1212B.10.00011
ORF1ab/nsp3395P395PccAccG1212B.1.1460.050847
ORF1ab/nsp3395P395LcCacTa1212B.390.027972
ORF1ab/nsp3395P395SCcaTca1111AY.4.20.000239
ORF1ab/nsp3395P395SCcaTca1111B.1.177.70.001813
ORF1ab/nsp3395P395SCcaTca1111P.10.000173
ORF1ab/nsp3395P395LcCacTa910AY.230.000628
ORF1ab/nsp3395P395LCCaTTa110AY.230.00007
ORF1ab/nsp3395P395PccAccC910AY.330.000601
ORF1ab/nsp3395P395PccAccT110AY.330.000067
ORF1ab/nsp3395P395PccAccT1010AY.470.000311
ORF1ab/nsp3395P395LcCacTa1010AY.60.000411
ORF1ab/nsp3395P395SCcaTca1010AY.820.013569
ORF1ab/nsp3395P395SCcaTca1010AY.9.20.000367
ORF1ab/nsp3395P395LcCacTa1010B.1.1.3060.004384
ORF1ab/nsp3395P395LcCacTa1010B.1.1.330.004209
ORF1ab/nsp3395P395LcCacTa1010B.1.2580.000665
ORF1ab/nsp3395P395LcCacTa99AY.1190.000318
ORF1ab/nsp3395P395LcCacTa99AY.200.00035
ORF1ab/nsp3395P395LcCacTa99AY.350.002097
ORF1ab/nsp3395P395PccAccG79AY.390.000173
ORF1ab/nsp3395P395PccAccT19AY.390.000025
ORF1ab/nsp3395P395PccAccC19AY.390.000025
ORF1ab/nsp3395P395PccAccG99AY.910.006574
ORF1ab/nsp3395P395SCcaTca99AY.960.018672
ORF1ab/nsp3395P395delCCA---99B.1.1.70.000008
ORF1ab/nsp3395P395LcCacTa99B.1.6210.000797
ORF1ab/nsp3395P395ACcaGca88All0.000002
ORF1ab/nsp3395P395LcCacTa88AY.690.001493
ORF1ab/nsp3395P395TCcaAca88AY.98.10.000387
ORF1ab/nsp3395P395LcCacTa88B.1.1.2410.016563
ORF1ab/nsp3395P395LcCacTa88B.1.1.3170.003294
ORF1ab/nsp3395P395LcCacTa88B.1.1.3180.002414
ORF1ab/nsp3395P395LcCacTa88B.1.177.210.000612
ORF1ab/nsp3395P395SCcaTca88B.1.177.600.001747
ORF1ab/nsp3395P395LcCacTa88B.1.360.001167
ORF1ab/nsp3395P395SCcaTca77AY.1020.000186
ORF1ab/nsp3395P395LcCacTa77AY.116.10.00218
ORF1ab/nsp3395P395PccAccG67AY.290.000095
ORF1ab/nsp3395P395PccAccT17AY.290.000016
ORF1ab/nsp3395P395SCcaTca77AY.30.00007
ORF1ab/nsp3395P395LcCacTa67AY.450.00073
ORF1ab/nsp3395P395LCCaTTa17AY.450.000122
ORF1ab/nsp3395P395SCcaTca77AY.50.000145
ORF1ab/nsp3395P395LcCacTa77AY.610.000733
ORF1ab/nsp3395P395PccAccG77B.10.000064
ORF1ab/nsp3395P395LcCacTa77B.1.1.4340.00244
ORF1ab/nsp3395P395delCCA---77B.1.20.000062
ORF1ab/nsp3395P395SCcaTca77B.1.2580.000466
ORF1ab/nsp3395P395SCcaTca77B.1.4160.008883
ORF1ab/nsp3395P395LcCacTa77B.1.5260.000165
ORF1ab/nsp3395P395LcCacTa77C.36.30.003971
ORF1ab/nsp3395P395LcCacTa77P.1.10.002224
ORF1ab/nsp3395P395RcCacGa66All0.000001
ORF1ab/nsp3395P395PccAccG66AY.200.000233
ORF1ab/nsp3395P395delCCA---66AY.440.000037
ORF1ab/nsp3395P395SCcaTca66AY.7.20.003356
ORF1ab/nsp3395P395SCcaTca66AY.90.000406
ORF1ab/nsp3395P395LcCacTa66AY.9.20.00022
ORF1ab/nsp3395P395delCCA---66B.1.110.30.00431
ORF1ab/nsp3395P395TCcaAca66B.1.2430.000418
ORF1ab/nsp3395P395PccAccG66B.1.5250.000679
ORF1ab/nsp3395P395LcCacTa66B.1.5960.000523
ORF1ab/nsp3395P395PccAccG36P.10.000047
ORF1ab/nsp3395P395PccAccT36P.10.000047
ORF1ab/nsp3395P395LcCacTa55A.300.714286
ORF1ab/nsp3395P395SCcaTca55AY.1000.00023
ORF1ab/nsp3395P395PccAccG25AY.1190.000071
ORF1ab/nsp3395P395PccAccC25AY.1190.000071
ORF1ab/nsp3395P395PccAccT15AY.1190.000035
ORF1ab/nsp3395P395LcCacTa55AY.130.000805
ORF1ab/nsp3395P395LcCacTa55AY.16.10.00235
ORF1ab/nsp3395P395SCcaTca55AY.200.000194
ORF1ab/nsp3395P395PccAccT55AY.46.60.000361
ORF1ab/nsp3395P395delCCA---55B.10.000046
ORF1ab/nsp3395P395TCcaAca55B.10.000046
ORF1ab/nsp3395P395LcCacTa55B.1.177.170.004105
ORF1ab/nsp3395P395LcCacTa55B.1.2210.000355
ORF1ab/nsp3395P395SCcaTca55B.1.5750.001517
ORF1ab/nsp3395P395delCCA---55B.1.5960.000436
ORF1ab/nsp3395P395delCCA---55P.10.000079
ORF1ab/nsp3395P395LcCacTa55R.10.00045
ORF1ab/nsp3395P395LcCAcTG140.055556
ORF1ab/nsp3395P395LcCacTa140.055556
ORF1ab/nsp3395P395LCCATTG140.055556
ORF1ab/nsp3395P395LCCaTTa140.055556
ORF1ab/nsp3395P395PccAccG24AY.1020.000053
ORF1ab/nsp3395P395PccAccT24AY.1020.000053
ORF1ab/nsp3395P395PccAccC44AY.1060.00134
ORF1ab/nsp3395P395TCcaAca44AY.1200.000149
ORF1ab/nsp3395P395LcCacTa44AY.1210.000541
ORF1ab/nsp3395P395SCcaTca44AY.260.000113
ORF1ab/nsp3395P395SCcaTca44AY.330.000267
ORF1ab/nsp3395P395LcCacTa44AY.360.000593
ORF1ab/nsp3395P395delCCA---44AY.390.000099
ORF1ab/nsp3395P395PccAccG44AY.4.20.000087
ORF1ab/nsp3395P395LcCacTa44AY.790.004843
ORF1ab/nsp3395P395delCCA---44B.1.10.000073
ORF1ab/nsp3395P395PccAccG34B.1.10.000054
ORF1ab/nsp3395P395PccAccC14B.1.10.000018
ORF1ab/nsp3395P395LcCacTa44B.1.1.2220.000816
ORF1ab/nsp3395P395LcCacTa44B.1.1.250.002274
ORF1ab/nsp3395P395LcCacTa44B.1.1.4120.030534
ORF1ab/nsp3395P395SCcaTca44B.1.1.4320.005063
ORF1ab/nsp3395P395SCcaTca44B.1.1.4860.006309
ORF1ab/nsp3395P395SCcaTca44B.1.1.5250.021858
ORF1ab/nsp3395P395SCcaTca44B.1.1770.000053
ORF1ab/nsp3395P395PccAccG24B.1.1770.000026
ORF1ab/nsp3395P395PccAccT24B.1.1770.000026
ORF1ab/nsp3395P395LcCacTa44B.1.177.870.002911
ORF1ab/nsp3395P395SCcaTca44B.1.258.30.0067
ORF1ab/nsp3395P395LcCacTa44B.1.4040.005208
ORF1ab/nsp3395P395PccAccG44B.1.5750.001214
ORF1ab/nsp3395P395delCCA---44B.1.617.20.000015
ORF1ab/nsp3395P395LcCacTa44C.370.000464
ORF1ab/nsp3395P395SCcaTca44P.20.000747
ORF1ab/nsp3395P395LcCacTa44Q.80.00066
ORF1ab/nsp3395P395XCCaTAa33All0.000001
ORF1ab/nsp3395P395del1Cca-ca33All0.000001
ORF1ab/nsp3395P395PccAccG33AY.1000.000138
ORF1ab/nsp3395P395LcCacTa33AY.1170.000254
ORF1ab/nsp3395P395PccAccG33AY.1200.000112
ORF1ab/nsp3395P395QcCacAa33AY.120.2.10.001495
ORF1ab/nsp3395P395delCCA---33AY.230.000209
ORF1ab/nsp3395P395delCCA---33AY.260.000085
ORF1ab/nsp3395P395LcCacTa33AY.340.000291
ORF1ab/nsp3395P395LcCacTa33AY.420.000121
ORF1ab/nsp3395P395QcCacAa33AY.430.000013
ORF1ab/nsp3395P395LcCacTa33AY.460.000312
ORF1ab/nsp3395P395LcCacTa23AY.590.001059
ORF1ab/nsp3395P395LCCaTTa13AY.590.00053
ORF1ab/nsp3395P395PccAccG23AY.610.00021
ORF1ab/nsp3395P395PccAccT13AY.610.000105
ORF1ab/nsp3395P395PccAccG33AY.840.001312
ORF1ab/nsp3395P395LcCacTa33AY.99.20.000276
ORF1ab/nsp3395P395RcCacGa33B.10.000027
ORF1ab/nsp3395P395LcCacTa33B.1.1.1760.001318
ORF1ab/nsp3395P395LcCacTa33B.1.1.2140.000166
ORF1ab/nsp3395P395LcCacTa33B.1.1.3260.005282
ORF1ab/nsp3395P395SCcaTca33B.1.1.3890.018182
ORF1ab/nsp3395P395TCcaAca33B.1.1.70.000003
ORF1ab/nsp3395P395LcCacTa33B.1.1.700.001023
ORF1ab/nsp3395P395PccAccG33B.1.1.700.001023
ORF1ab/nsp3395P395LcCacTa33B.1.177.860.00055
ORF1ab/nsp3395P395PccAccG33B.1.2580.0002
ORF1ab/nsp3395P395PccAccG23B.1.3510.000059
ORF1ab/nsp3395P395PccAccT13B.1.3510.00003
ORF1ab/nsp3395P395SCcaTca33B.1.351.50.001799
ORF1ab/nsp3395P395SCcaTca33B.1.36.160.004274
ORF1ab/nsp3395P395SCcaTca33B.1.36.170.001482
ORF1ab/nsp3395P395LcCacTa33B.1.3980.008929
ORF1ab/nsp3395P395delCCA---33B.1.4290.000071
ORF1ab/nsp3395P395LcCacTa33B.1.5250.000339
ORF1ab/nsp3395P395TCcaAca33B.1.617.20.000011
ORF1ab/nsp3395P395LcCacTa33B.1.6370.000219
ORF1ab/nsp3395P395LcCacTa33B.1.6380.157895
ORF1ab/nsp3395P395LcCacTa33B.40.006623
ORF1ab/nsp3395P395LcCacTa33C.37.10.007853
ORF1ab/nsp3395P395LcCacTa33Q.70.003333
ORF1ab/nsp3395P395ICCAATT220.111111
ORF1ab/nsp3395P395XCCaTAa220.111111
ORF1ab/nsp3395P395SCcaTca120.055556
ORF1ab/nsp3395P395SCcATcG120.055556
ORF1ab/nsp3395P395LcCacTa22A.23.10.001408
ORF1ab/nsp3395P395ICCAATT22All0
ORF1ab/nsp3395P395QcCacAa22AY.1020.000053
ORF1ab/nsp3395P395TCcaAca22AY.1030.000012
ORF1ab/nsp3395P395LcCacTa22AY.1140.000462
ORF1ab/nsp3395P395SCcaTca22AY.1200.000074
ORF1ab/nsp3395P395PccAccG22AY.120.2.10.000997
ORF1ab/nsp3395P395LcCacTa22AY.140.000176
ORF1ab/nsp3395P395LcCacTa22AY.160.000759
ORF1ab/nsp3395P395LcCacTa22AY.240.000862
ORF1ab/nsp3395P395PccAccG22AY.240.000862
ORF1ab/nsp3395P395QcCacAa22AY.250.000012
ORF1ab/nsp3395P395LcCacTa22AY.270.000129
ORF1ab/nsp3395P395delCCA---22AY.30.00002
ORF1ab/nsp3395P395SCcaTca22AY.3.10.000171
ORF1ab/nsp3395P395PccAccG12AY.3.10.000085
ORF1ab/nsp3395P395PccAccT12AY.3.10.000085
ORF1ab/nsp3395P395ACcaGca22AY.330.000134
ORF1ab/nsp3395P395SCcaTca22AY.340.000194
ORF1ab/nsp3395P395TCcaAca22AY.370.000632
ORF1ab/nsp3395P395QcCacAa22AY.40.000003
ORF1ab/nsp3395P395LcCacTa22AY.4.2.10.000298
ORF1ab/nsp3395P395LcCacTa22AY.4.50.000215
ORF1ab/nsp3395P395PccAccT22AY.420.00008
ORF1ab/nsp3395P395TCcaAca22AY.430.000009
ORF1ab/nsp3395P395SCcaTca22AY.460.000208
ORF1ab/nsp3395P395PccAccT22AY.46.40.000329
ORF1ab/nsp3395P395SCcaTca22AY.470.000062
ORF1ab/nsp3395P395LcCacTa22AY.570.001312
ORF1ab/nsp3395P395SCcaTca22AY.690.000373
ORF1ab/nsp3395P395LcCacTa22AY.840.000875
ORF1ab/nsp3395P395LcCacTa22AY.90.000135
ORF1ab/nsp3395P395LcCacTa22AY.9.10.000167
ORF1ab/nsp3395P395TCcaAca22AY.980.000158
ORF1ab/nsp3395P395LcCacTa22AY.990.002099
ORF1ab/nsp3395P395SCcaTca22AY.99.20.000184
ORF1ab/nsp3395P395PccAccT22B0.000256
ORF1ab/nsp3395P395QcCacAa22B.10.000018
ORF1ab/nsp3395P395delCCA---22B.1.1.2000.014925
ORF1ab/nsp3395P395SCcaTca22B.1.1.2140.000111
ORF1ab/nsp3395P395LcCacTa22B.1.1.2160.001781
ORF1ab/nsp3395P395LcCacTa22B.1.1.2840.000215
ORF1ab/nsp3395P395LcCacTa22B.1.1.3480.001592
ORF1ab/nsp3395P395LcCacTa22B.1.1.370.000386
ORF1ab/nsp3395P395SCcaTca22B.1.1.4190.014815
ORF1ab/nsp3395P395LcCacTa22B.1.1.440.004819
ORF1ab/nsp3395P395PccAccG22B.1.1.500.001358
ORF1ab/nsp3395P395SCcaTca22B.1.1.5190.000079
ORF1ab/nsp3395P395LcCacTa22B.1.110.30.001437
ORF1ab/nsp3395P395PccAccT22B.1.177.180.00232
ORF1ab/nsp3395P395SCcaTca22B.1.177.80.001505
ORF1ab/nsp3395P395PccAccT22B.1.177.810.000379
ORF1ab/nsp3395P395LcCacTa22B.1.177.810.000379
ORF1ab/nsp3395P395LcCacTa22B.1.1890.008584
ORF1ab/nsp3395P395QcCacAa22B.1.20.000018
ORF1ab/nsp3395P395LcCacTa22B.1.220.002635
ORF1ab/nsp3395P395delCCA---22B.1.2230.005556
ORF1ab/nsp3395P395PccAccG22B.1.2340.000264
ORF1ab/nsp3395P395LcCacTa22B.1.2340.000264
ORF1ab/nsp3395P395SCcaTca22B.1.2410.001623
ORF1ab/nsp3395P395SCcaTca22B.1.3400.008584
ORF1ab/nsp3395P395LcCacTa22B.1.3440.016393
ORF1ab/nsp3395P395ACcaGca22B.1.3460.002621
ORF1ab/nsp3395P395PccAccG22B.1.360.000292
ORF1ab/nsp3395P395LcCacTa22B.1.4200.020833
ORF1ab/nsp3395P395LcCacTa22B.1.438.10.000215
ORF1ab/nsp3395P395LcCacTa22B.1.4700.002809
ORF1ab/nsp3395P395delCCA---22B.1.5260.000047
ORF1ab/nsp3395P395LcCacTa22B.1.5610.000794
ORF1ab/nsp3395P395SCcaTca22B.1.5960.000174
ORF1ab/nsp3395P395LcCacTa22B.1.6030.021277
ORF1ab/nsp3395P395LcCacTa22B.1.617.10.000258
ORF1ab/nsp3395P395QcCacAa22B.1.617.20.000008
ORF1ab/nsp3395P395delCCA---22B.1.6210.000177
ORF1ab/nsp3395P395SCcaTca22B.1.6270.00404
ORF1ab/nsp3395P395LcCacTa22B.1.9.40.01227
ORF1ab/nsp3395P395SCcaTca22C.370.000232
ORF1ab/nsp3395P395LcCacTa22D.20.00015
ORF1ab/nsp3395P395delCCA---22P.1.120.000968
ORF1ab/nsp3395P395LcCacTa22P.1.40.001953
ORF1ab/nsp3395P395LcCacTa22P.1.90.009615
ORF1ab/nsp3395P395LcCacTa22Q.10.000253
ORF1ab/nsp3395P395PccAccT22Q.80.00033
ORF1ab/nsp3395P395PccAccG22R.10.00018
ORF1ab/nsp3395P395ACcaGca110.055556
ORF1ab/nsp3395P395PccAccG110.055556
ORF1ab/nsp3395P395XCCaTAa11A0.000387
ORF1ab/nsp3395P395QcCacAa11A0.000387
ORF1ab/nsp3395P395LcCacTa11A0.000387
ORF1ab/nsp3395P395LcCacTa11A.20.000662
ORF1ab/nsp3395P395LcCacTa11A.2.40.003367
ORF1ab/nsp3395P395SCcaTca11A.2.40.003367
ORF1ab/nsp3395P395PccAccC11A.2.40.003367
ORF1ab/nsp3395P395LcCacTa11A.2.50.000499
ORF1ab/nsp3395P395PccAccT11A.2.50.000499
ORF1ab/nsp3395P395LcCacTa11A.2.5.20.001572
ORF1ab/nsp3395P395LcCacTa11A.2.5.30.010309
ORF1ab/nsp3395P395SCcaTca11A.60.005128
ORF1ab/nsp3395P395LcCacTa11AD.20.000219
ORF1ab/nsp3395P395LcCacTa11AE.80.000489
ORF1ab/nsp3395P395LcCacTa11AU.20.002421
ORF1ab/nsp3395P395SCcaTca11AY.10.000396
ORF1ab/nsp3395P395TCcaAca11AY.1000.000046
ORF1ab/nsp3395P395TCcaAca11AY.1020.000027
ORF1ab/nsp3395P395LcCacTa11AY.1060.000335
ORF1ab/nsp3395P395LcCacTa11AY.1080.001103
ORF1ab/nsp3395P395LcCacTa11AY.1110.000183
ORF1ab/nsp3395P395LCCaTTa11AY.1150.005208
ORF1ab/nsp3395P395PccAccG11AY.1160.000287
ORF1ab/nsp3395P395PccAccC11AY.1170.000085
ORF1ab/nsp3395P395SCcaTca11AY.1190.000035
ORF1ab/nsp3395P395delCCA---11AY.1210.000135
ORF1ab/nsp3395P395SCcaTca11AY.130.000161
ORF1ab/nsp3395P395PccAccG11AY.140.000088
ORF1ab/nsp3395P395QcCacAa11AY.140.000088
ORF1ab/nsp3395P395delCCA---11AY.190.00114
ORF1ab/nsp3395P395delCCA---11AY.200.000039
ORF1ab/nsp3395P395PccAccG11AY.230.00007
ORF1ab/nsp3395P395SCcaTca11AY.230.00007
ORF1ab/nsp3395P395del1Cca-ca11AY.230.00007
ORF1ab/nsp3395P395SCcaTca11AY.23.10.000417
ORF1ab/nsp3395P395delCCA---11AY.250.000006
ORF1ab/nsp3395P395PccAccG11AY.260.000028
ORF1ab/nsp3395P395delCCA---11AY.290.000016
ORF1ab/nsp3395P395TCcaAca11AY.30.00001
ORF1ab/nsp3395P395delCCA---11AY.3.10.000085
ORF1ab/nsp3395P395LcCacTa11AY.300.000396
ORF1ab/nsp3395P395LcCacTa11AY.330.000067
ORF1ab/nsp3395P395delCCA---11AY.330.000067
ORF1ab/nsp3395P395SCcaTca11AY.350.000233
ORF1ab/nsp3395P395TCcaAca11AY.360.000148
ORF1ab/nsp3395P395SCcaTca11AY.360.000148
ORF1ab/nsp3395P395LcCacTa11AY.370.000316
ORF1ab/nsp3395P395SCcaTca11AY.380.000499
ORF1ab/nsp3395P395LcCacTa11AY.380.000499
ORF1ab/nsp3395P395QcCacAa11AY.4.20.000022
ORF1ab/nsp3395P395PccAccG11AY.4.2.10.000149
ORF1ab/nsp3395P395SCcaTca11AY.4.40.000409
ORF1ab/nsp3395P395SCcaTca11AY.4.50.000107
ORF1ab/nsp3395P395PccAccG11AY.410.000294
ORF1ab/nsp3395P395TCcaAca11AY.440.000006
ORF1ab/nsp3395P395QcCacAa11AY.440.000006
ORF1ab/nsp3395P395SCcaTca11AY.450.000122
ORF1ab/nsp3395P395delCCA---11AY.460.000104
ORF1ab/nsp3395P395LcCacTa11AY.46.20.000635
ORF1ab/nsp3395P395SCcaTca11AY.46.60.000072
ORF1ab/nsp3395P395LcCacTa11AY.46.60.000072
ORF1ab/nsp3395P395TCcaAca11AY.50.000021
ORF1ab/nsp3395P395delCCA---11AY.50.000021
ORF1ab/nsp3395P395LcCacTa11AY.5.30.000337
ORF1ab/nsp3395P395SCcaTca11AY.510.000909
ORF1ab/nsp3395P395LcCacTa11AY.530.000288
ORF1ab/nsp3395P395LcCacTa11AY.540.000095
ORF1ab/nsp3395P395PccAccG11AY.550.000917
ORF1ab/nsp3395P395SCcaTca11AY.600.000938
ORF1ab/nsp3395P395SCcaTca11AY.610.000105
ORF1ab/nsp3395P395LcCacTa11AY.650.000533
ORF1ab/nsp3395P395PccAccG11AY.7.10.000113
ORF1ab/nsp3395P395LcCacTa11AY.710.000475
ORF1ab/nsp3395P395PccAccG11AY.710.000475
ORF1ab/nsp3395P395SCcaTca11AY.710.000475
ORF1ab/nsp3395P395LcCacTa11AY.740.000116
ORF1ab/nsp3395P395SCcaTca11AY.750.000056
ORF1ab/nsp3395P395LcCacTa11AY.75.10.00018
ORF1ab/nsp3395P395TCcaAca11AY.75.10.00018
ORF1ab/nsp3395P395LcCacTa11AY.80.000606
ORF1ab/nsp3395P395LcCacTa11AY.830.001724
ORF1ab/nsp3395P395PccAccG11AY.850.000427
ORF1ab/nsp3395P395LcCacTa11AY.860.00083
ORF1ab/nsp3395P395LcCacTa11AY.890.004902
ORF1ab/nsp3395P395PccAccG11AY.9.10.000084
ORF1ab/nsp3395P395PccAccT11AY.9.20.000037
ORF1ab/nsp3395P395SCcaTca11AY.9.2.10.001976
ORF1ab/nsp3395P395LcCacTa11AY.920.000287
ORF1ab/nsp3395P395SCcaTca11AY.920.000287
ORF1ab/nsp3395P395LcCacTa11AY.950.000761
ORF1ab/nsp3395P395PccAccT11AY.960.002075
ORF1ab/nsp3395P395LcCacTa11AY.98.10.000048
ORF1ab/nsp3395P395PccAccT11AY.98.10.000048
ORF1ab/nsp3395P395delCCA---11AY.98.10.000048
ORF1ab/nsp3395P395PccAccG11AY.99.20.000092
ORF1ab/nsp3395P395SCcaTca11B0.000128
ORF1ab/nsp3395P395del1Cca-ca11B.10.000009
ORF1ab/nsp3395P395ACcaGca11B.1.10.000018
ORF1ab/nsp3395P395LcCacTa11B.1.1.10.000327
ORF1ab/nsp3395P395LcCacTa11B.1.1.1350.004695
ORF1ab/nsp3395P395delCCA---11B.1.1.1350.004695
ORF1ab/nsp3395P395LcCacTa11B.1.1.1530.001095
ORF1ab/nsp3395P395delCCA---11B.1.1.1920.002309
ORF1ab/nsp3395P395PccAccG11B.1.1.1940.00495
ORF1ab/nsp3395P395LcCacTa11B.1.1.2010.02439
ORF1ab/nsp3395P395delCCA---11B.1.1.2210.010101
ORF1ab/nsp3395P395SCcaTca11B.1.1.2220.000204
ORF1ab/nsp3395P395delCCA---11B.1.1.250.000569
ORF1ab/nsp3395P395SCcaTca11B.1.1.250.000569
ORF1ab/nsp3395P395PccAccG11B.1.1.250.000569
ORF1ab/nsp3395P395LCCaTTa11B.1.1.2580.003257
ORF1ab/nsp3395P395LcCacTa11B.1.1.280.000311
ORF1ab/nsp3395P395delCCA---11B.1.1.2940.001266
ORF1ab/nsp3395P395SCcaTca11B.1.1.2940.001266
ORF1ab/nsp3395P395QcCacAa11B.1.1.3000.010753
ORF1ab/nsp3395P395delCCA---11B.1.1.3150.008475
ORF1ab/nsp3395P395delCCA---11B.1.1.330.000421
ORF1ab/nsp3395P395PccAccG11B.1.1.3370.003597
ORF1ab/nsp3395P395SCcaTca11B.1.1.3470.018182
ORF1ab/nsp3395P395PccAccG11B.1.1.3970.002252
ORF1ab/nsp3395P395delCCA---11B.1.1.4160.000905
ORF1ab/nsp3395P395LcCacTa11B.1.1.4190.007407
ORF1ab/nsp3395P395LcCacTa11B.1.1.4330.001425
ORF1ab/nsp3395P395SCcaTca11B.1.1.500.000679
ORF1ab/nsp3395P395RcCacGa11B.1.1.5190.00004
ORF1ab/nsp3395P395delCCA---11B.1.1.5190.00004
ORF1ab/nsp3395P395TCcaAca11B.1.1.5230.001563
ORF1ab/nsp3395P395LcCacTa11B.1.1.5260.003546
ORF1ab/nsp3395P395LcCacTa11B.1.1.540.003021
ORF1ab/nsp3395P395SCcaTca11B.1.1.630.000386
ORF1ab/nsp3395P395RcCacGa11B.1.1.70.000001
ORF1ab/nsp3395P395QcCacAa11B.1.1.70.000001
ORF1ab/nsp3395P395delCCA---11B.1.1100.004525
ORF1ab/nsp3395P395LcCacTa11B.1.1390.000733
ORF1ab/nsp3395P395delCCA---11B.1.1400.018868
ORF1ab/nsp3395P395SCcaTca11B.1.1600.000031
ORF1ab/nsp3395P395PccAccT11B.1.1600.000031
ORF1ab/nsp3395P395LcCacTa11B.1.1630.02439
ORF1ab/nsp3395P395delCCA---11B.1.1770.000013
ORF1ab/nsp3395P395ACcaGca11B.1.1770.000013
ORF1ab/nsp3395P395LcCacTa11B.1.177.100.000878
ORF1ab/nsp3395P395SCcaTca11B.1.177.210.000076
ORF1ab/nsp3395P395LcCacTa11B.1.177.330.001645
ORF1ab/nsp3395P395SCcaTca11B.1.177.350.000691
ORF1ab/nsp3395P395LcCacTa11B.1.177.350.000691
ORF1ab/nsp3395P395delCCA---11B.1.177.40.000211
ORF1ab/nsp3395P395LcCacTa11B.1.177.420.000894
ORF1ab/nsp3395P395SCcaTca11B.1.177.50.001242
ORF1ab/nsp3395P395PccAccT11B.1.177.520.001757
ORF1ab/nsp3395P395PccAccG11B.1.177.550.002331
ORF1ab/nsp3395P395delCCA---11B.1.177.570.000281
ORF1ab/nsp3395P395LcCacTa11B.1.177.600.000218
ORF1ab/nsp3395P395QcCacAa11B.1.177.70.000165
ORF1ab/nsp3395P395LcCacTa11B.1.177.730.000566
ORF1ab/nsp3395P395PccAccG11B.1.177.750.001041
ORF1ab/nsp3395P395LcCacTa11B.1.177.820.000477
ORF1ab/nsp3395P395LcCacTa11B.1.177.830.001481
ORF1ab/nsp3395P395del1Cca-ca11B.1.20.000009
ORF1ab/nsp3395P395delCCA---11B.1.2210.000071
ORF1ab/nsp3395P395SCcaTca11B.1.2210.000071
ORF1ab/nsp3395P395TCcaAca11B.1.2210.000071
ORF1ab/nsp3395P395SCcATcT11B.1.2220.001692
ORF1ab/nsp3395P395SCcaTca11B.1.2360.002053
ORF1ab/nsp3395P395LcCacTa11B.1.2370.004975
ORF1ab/nsp3395P395LcCacTa11B.1.2390.001221
ORF1ab/nsp3395P395LcCacTa11B.1.258.40.003448
ORF1ab/nsp3395P395delCCA---11B.1.2790.000514
ORF1ab/nsp3395P395QcCacAa11B.1.3060.005714
ORF1ab/nsp3395P395PccAccG11B.1.3190.003049
ORF1ab/nsp3395P395QcCacAa11B.1.3320.003497
ORF1ab/nsp3395P395SCcaTca11B.1.351.20.000303
ORF1ab/nsp3395P395delCCA---11B.1.360.000146
ORF1ab/nsp3395P395LcCacTa11B.1.36.180.00042
ORF1ab/nsp3395P395delCCA---11B.1.36.180.00042
ORF1ab/nsp3395P395SCcaTca11B.1.36.220.001208
ORF1ab/nsp3395P395LcCacTa11B.1.36.290.000517
ORF1ab/nsp3395P395PccAccG11B.1.36.360.000602
ORF1ab/nsp3395P395LcCacTa11B.1.3670.000792
ORF1ab/nsp3395P395PccAccT11B.1.3690.000285
ORF1ab/nsp3395P395LcCacTa11B.1.3690.000285
ORF1ab/nsp3395P395LcCacTa11B.1.3810.007812
ORF1ab/nsp3395P395LcCacTa11B.1.3850.010638
ORF1ab/nsp3395P395SCcaTca11B.1.3960.000706
ORF1ab/nsp3395P395LcCacTa11B.1.3990.001934
ORF1ab/nsp3395P395LcCacTa11B.1.4000.000429
ORF1ab/nsp3395P395SCcaTca11B.1.4020.009804
ORF1ab/nsp3395P395LcCacTa11B.1.4110.003704
ORF1ab/nsp3395P395SCcaTca11B.1.4150.014286
ORF1ab/nsp3395P395delCCA---11B.1.4200.010417
ORF1ab/nsp3395P395LcCacTa11B.1.4220.000812
ORF1ab/nsp3395P395LcCacTa11B.1.4280.00102
ORF1ab/nsp3395P395SCcaTca11B.1.428.30.012821
ORF1ab/nsp3395P395PccAccG11B.1.4290.000024
ORF1ab/nsp3395P395SCcaTca11B.1.4290.000024
ORF1ab/nsp3395P395ACcaGca11B.1.4290.000024
ORF1ab/nsp3395P395SCcaTca11B.1.4560.003268
ORF1ab/nsp3395P395QcCacAa11B.1.466.20.000391
ORF1ab/nsp3395P395SCcaTca11B.1.4740.001901
ORF1ab/nsp3395P395LcCacTa11B.1.5010.007353
ORF1ab/nsp3395P395LcCacTa11B.1.5070.011236
ORF1ab/nsp3395P395LcCacTa11B.1.5240.001406
ORF1ab/nsp3395P395SCcaTca11B.1.5240.001406
ORF1ab/nsp3395P395PccAccG11B.1.5260.000024
ORF1ab/nsp3395P395TCcaAca11B.1.5260.000024
ORF1ab/nsp3395P395LcCacTa11B.1.5380.008065
ORF1ab/nsp3395P395SCcaTca11B.1.5600.00463
ORF1ab/nsp3395P395PccAccT11B.1.5640.000426
ORF1ab/nsp3395P395LcCacTa11B.1.5680.001111
ORF1ab/nsp3395P395PccAccT11B.1.5710.009709
ORF1ab/nsp3395P395LcCacTa11B.1.5750.000303
ORF1ab/nsp3395P395PccAccT11B.1.5820.000491
ORF1ab/nsp3395P395delCCA---11B.1.5950.000261
ORF1ab/nsp3395P395SCcaTca11B.1.5950.000261
ORF1ab/nsp3395P395PccAccG11B.1.5960.000087
ORF1ab/nsp3395P395LcCacTa11B.1.5970.00463
ORF1ab/nsp3395P395LcCacTa11B.1.6000.005848
ORF1ab/nsp3395P395QcCacAa11B.1.6090.000479
ORF1ab/nsp3395P395RcCacGa11B.1.617.10.000129
ORF1ab/nsp3395P395SCcaTca11B.1.617.10.000129
ORF1ab/nsp3395P395SCcaTca11B.1.6210.000089
ORF1ab/nsp3395P395PccAccG11B.1.6210.000089
ORF1ab/nsp3395P395LcCacTa11B.1.6250.002353
ORF1ab/nsp3395P395LcCacTa11B.1.9.50.005682
ORF1ab/nsp3395P395delCCA---11B.340.013699
ORF1ab/nsp3395P395delCCA---11B.570.015152
ORF1ab/nsp3395P395LcCacTa11C.300.001727
ORF1ab/nsp3395P395delCCA---11C.370.000116
ORF1ab/nsp3395P395SCcaTca11C.37.10.002618
ORF1ab/nsp3395P395delCCA---11D.20.000075
ORF1ab/nsp3395P395PccAccG11N.40.004255
ORF1ab/nsp3395P395delCCA---11N.60.007092
ORF1ab/nsp3395P395LcCacTa11N.60.007092
ORF1ab/nsp3395P395SCcaTca11N.90.005952
ORF1ab/nsp3395P395QcCacAa11P.10.000016
ORF1ab/nsp3395P395LcCacTa11P.1.120.000484
ORF1ab/nsp3395P395delCCA---11P.1.140.000048
ORF1ab/nsp3395P395PccAccG11P.1.140.000048
ORF1ab/nsp3395P395SCcaTca11P.1.140.000048
ORF1ab/nsp3395P395LcCacTa11P.1.60.001946
ORF1ab/nsp3395P395LcCacTa11P.1.70.000319
ORF1ab/nsp3395P395SCcaTca11P.1.70.000319
ORF1ab/nsp3395P395LcCacTa11P.70.004367
ORF1ab/nsp3395P395SCcaTca11Q.10.000126
ORF1ab/nsp3395P395PccAccG11Q.10.000126
ORF1ab/nsp3395P395SCcaTca11Q.30.000145
ORF1ab/nsp3395P395delCCA---11R.10.00009

CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk

CoV-GLUE uses sequence data from GISAID. GISAID data provided via this web application is subject to GISAID's Terms and Conditions.