CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF1ab/nsp3 : CodonNum = 39 & Codon = tgT

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF1ab/nsp339C39CC857CsyntgCtgT2476247612834-2836

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF1ab/nsp339C39CtgCtgT24762476All0.000474
ORF1ab/nsp339C39CtgCtgT916916B.1.36.80.916
ORF1ab/nsp339C39CtgCtgT349349B.1.36.260.997143
ORF1ab/nsp339C39CtgCtgT188188B.1.36.310.329247
ORF1ab/nsp339C39CtgCtgT123123B.1.20.001083
ORF1ab/nsp339C39CtgCtgT107107B.1.1.70.000096
ORF1ab/nsp339C39CtgCtgT6363B.1.617.20.000237
ORF1ab/nsp339C39CtgCtgT5959B.1.1130.921875
ORF1ab/nsp339C39CtgCtgT5454AY.1030.000335
ORF1ab/nsp339C39CtgCtgT5353AY.40.000082
ORF1ab/nsp339C39CtgCtgT4343B.1.1770.000566
ORF1ab/nsp339C39CtgCtgT4141B.10.000376
ORF1ab/nsp339C39CtgCtgT3939AY.250.000235
ORF1ab/nsp339C39CtgCtgT3838AY.440.000231
ORF1ab/nsp339C39CtgCtgT3434AY.430.000151
ORF1ab/nsp339C39CtgCtgT2929B.1.360.004231
ORF1ab/nsp339C39CtgCtgT2323AY.30.000229
ORF1ab/nsp339C39CtgCtgT1919B.1.10.000345
ORF1ab/nsp339C39CtgCtgT1212B.1.1.500.008147
ORF1ab/nsp339C39CtgCtgT99AY.390.000222
ORF1ab/nsp339C39CtgCtgT99B.1.1840.529412
ORF1ab/nsp339C39CtgCtgT88B.1.2470.119403
ORF1ab/nsp339C39CtgCtgT88B.1.2580.000532
ORF1ab/nsp339C39CtgCtgT77AY.370.002212
ORF1ab/nsp339C39CtgCtgT77AY.98.10.000339
ORF1ab/nsp339C39CtgCtgT77B.1.1.3170.002882
ORF1ab/nsp339C39CtgCtgT77B.1.1.5190.000278
ORF1ab/nsp339C39CtgCtgT77B.1.5260.000165
ORF1ab/nsp339C39CtgCtgT66B.1.36.100.028708
ORF1ab/nsp339C39CtgCtgT66B.1.36.170.002964
ORF1ab/nsp339C39CtgCtgT66B.1.4620.043478
ORF1ab/nsp339C39CtgCtgT66B.1.6210.000531
ORF1ab/nsp339C39CtgCtgT66Q.10.000758
ORF1ab/nsp339C39CtgCtgT55AY.1000.00023
ORF1ab/nsp339C39CtgCtgT55AY.1020.000133
ORF1ab/nsp339C39CtgCtgT55B0.000639
ORF1ab/nsp339C39CtgCtgT55B.1.4290.000118
ORF1ab/nsp339C39CtgCtgT55B.1.4560.01634
ORF1ab/nsp339C39CtgCtgT44AY.230.000279
ORF1ab/nsp339C39CtgCtgT44AY.90.00027
ORF1ab/nsp339C39CtgCtgT44B.1.1.4040.063492
ORF1ab/nsp339C39CtgCtgT44B.1.1600.000125
ORF1ab/nsp339C39CtgCtgT44B.1.177.410.01
ORF1ab/nsp339C39CtgCtgT44D.20.0003
ORF1ab/nsp339C39CtgCtgT44P.10.000063
ORF1ab/nsp339C39CtgCtgT330.166667
ORF1ab/nsp339C39CtgCtgT33A0.001161
ORF1ab/nsp339C39CtgCtgT33AY.260.000085
ORF1ab/nsp339C39CtgCtgT33AY.330.0002
ORF1ab/nsp339C39CtgCtgT33AY.50.000062
ORF1ab/nsp339C39CtgCtgT33AY.700.000626
ORF1ab/nsp339C39CtgCtgT33AY.720.004082
ORF1ab/nsp339C39CtgCtgT33AY.9.10.000251
ORF1ab/nsp339C39CtgCtgT33AY.9.20.00011
ORF1ab/nsp339C39CtgCtgT33B.1.1430.06383
ORF1ab/nsp339C39CtgCtgT22AY.1060.00067
ORF1ab/nsp339C39CtgCtgT22AY.1200.000074
ORF1ab/nsp339C39CtgCtgT22AY.200.000078
ORF1ab/nsp339C39CtgCtgT22AY.3.10.000171
ORF1ab/nsp339C39CtgCtgT22AY.340.000194
ORF1ab/nsp339C39CtgCtgT22AY.450.000243
ORF1ab/nsp339C39CtgCtgT22B.1.1.2370.010811
ORF1ab/nsp339C39CtgCtgT22B.1.1.280.000622
ORF1ab/nsp339C39CtgCtgT22B.1.177.210.000153
ORF1ab/nsp339C39CtgCtgT22B.1.177.600.000437
ORF1ab/nsp339C39CtgCtgT22B.1.2210.000142
ORF1ab/nsp339C39CtgCtgT22B.1.3510.000059
ORF1ab/nsp339C39CtgCtgT22B.1.36.290.001035
ORF1ab/nsp339C39CtgCtgT22B.1.4270.000101
ORF1ab/nsp339C39CtgCtgT22B.1.438.10.000215
ORF1ab/nsp339C39CtgCtgT22B.1.5750.000607
ORF1ab/nsp339C39CtgCtgT22B.1.5960.000174
ORF1ab/nsp339C39CtgCtgT22C.370.000232
ORF1ab/nsp339C39CtgCtgT22P.1.160.000748
ORF1ab/nsp339C39CtgCtgT22Q.40.00091
ORF1ab/nsp339C39CtgCtgT11A.10.000282
ORF1ab/nsp339C39CtgCtgT11AY.1050.000643
ORF1ab/nsp339C39CtgCtgT11AY.1140.000231
ORF1ab/nsp339C39CtgCtgT11AY.1160.000287
ORF1ab/nsp339C39CtgCtgT11AY.1180.000063
ORF1ab/nsp339C39CtgCtgT11AY.1190.000035
ORF1ab/nsp339C39CtgCtgT11AY.16.10.00047
ORF1ab/nsp339C39CtgCtgT11AY.20.000356
ORF1ab/nsp339C39CtgCtgT11AY.300.000396
ORF1ab/nsp339C39CtgCtgT11AY.360.000148
ORF1ab/nsp339C39CtgCtgT11AY.380.000499
ORF1ab/nsp339C39CtgCtgT11AY.39.20.001541
ORF1ab/nsp339C39CtgCtgT11AY.4.20.000022
ORF1ab/nsp339C39CtgCtgT11AY.4.2.10.000149
ORF1ab/nsp339C39CtgCtgT11AY.46.40.000165
ORF1ab/nsp339C39CtgCtgT11AY.470.000031
ORF1ab/nsp339C39CtgCtgT11AY.540.000095
ORF1ab/nsp339C39CtgCtgT11AY.550.000917
ORF1ab/nsp339C39CtgCtgT11AY.60.000041
ORF1ab/nsp339C39CtgCtgT11AY.610.000105
ORF1ab/nsp339C39CtgCtgT11AY.620.000436
ORF1ab/nsp339C39CtgCtgT11AY.650.000533
ORF1ab/nsp339C39CtgCtgT11AY.680.000274
ORF1ab/nsp339C39CtgCtgT11AY.790.001211
ORF1ab/nsp339C39CtgCtgT11B.1.1.10.000327
ORF1ab/nsp339C39CtgCtgT11B.1.1.160.055556
ORF1ab/nsp339C39CtgCtgT11B.1.1.1980.001468
ORF1ab/nsp339C39CtgCtgT11B.1.1.2160.00089
ORF1ab/nsp339C39CtgCtgT11B.1.1.2210.010101
ORF1ab/nsp339C39CtgCtgT11B.1.1.3030.002762
ORF1ab/nsp339C39CtgCtgT11B.1.1.3060.000438
ORF1ab/nsp339C39CtgCtgT11B.1.1.3180.000302
ORF1ab/nsp339C39CtgCtgT11B.1.1.3260.001761
ORF1ab/nsp339C39CtgCtgT11B.1.1.3690.000446
ORF1ab/nsp339C39CtgCtgT11B.1.1.370.000193
ORF1ab/nsp339C39CtgCtgT11B.1.1.4190.007407
ORF1ab/nsp339C39CtgCtgT11B.1.1.4640.001473
ORF1ab/nsp339C39CtgCtgT11B.1.1.5230.001563
ORF1ab/nsp339C39CtgCtgT11B.1.1.5260.003546
ORF1ab/nsp339C39CtgCtgT11B.1.1.630.000386
ORF1ab/nsp339C39CtgCtgT11B.1.1.700.000341
ORF1ab/nsp339C39CtgCtgT11B.1.1040.00369
ORF1ab/nsp339C39CtgCtgT11B.1.160.160.000929
ORF1ab/nsp339C39CtgCtgT11B.1.177.580.001332
ORF1ab/nsp339C39CtgCtgT11B.1.177.60.000977
ORF1ab/nsp339C39CtgCtgT11B.1.177.810.000189
ORF1ab/nsp339C39CtgCtgT11B.1.221.30.000833
ORF1ab/nsp339C39CtgCtgT11B.1.2320.000537
ORF1ab/nsp339C39CtgCtgT11B.1.258.170.000104
ORF1ab/nsp339C39CtgCtgT11B.1.351.30.000876
ORF1ab/nsp339C39CtgCtgT11B.1.36.160.001425
ORF1ab/nsp339C39CtgCtgT11B.1.466.20.000391
ORF1ab/nsp339C39CtgCtgT11B.1.5090.000866
ORF1ab/nsp339C39CtgCtgT11B.1.5330.009615
ORF1ab/nsp339C39CtgCtgT11B.1.5370.02
ORF1ab/nsp339C39CtgCtgT11B.1.5510.00129
ORF1ab/nsp339C39CtgCtgT11B.1.575.20.004808
ORF1ab/nsp339C39CtgCtgT11B.1.6020.006536
ORF1ab/nsp339C39CtgCtgT11B.1.6200.000946
ORF1ab/nsp339C39CtgCtgT11B.400.000364
ORF1ab/nsp339C39CtgCtgT11N.30.005814
ORF1ab/nsp339C39CtgCtgT11P.1.150.000232
ORF1ab/nsp339C39CtgCtgT11P.1.70.000319
ORF1ab/nsp339C39CtgCtgT11P.20.000187