CoV-GLUEGenomeCountriesLineagesMutationsInsertionsDeletionsUpdated:

CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF1ab/nsp3 : CodonNum = 384

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF1ab/nsp3384K384NK1202NnonsynaaGaaT16124160180.9934263869-3871
ORF1ab/nsp3384K384NK1202NnonsynaaGaaC161241060.006574053869-3871
ORF1ab/nsp3384K384EK1202EnonsynAagGag39039013869-3871
ORF1ab/nsp3384K384KK1202KsynaaGaaA32432413869-3871
ORF1ab/nsp3384K384RK1202RnonsynaAgaGg2702680.9925933869-3871
ORF1ab/nsp3384K384RK1202RnonsynaAGaGA27020.007407413869-3871
ORF1ab/nsp3384K384delK1202deldelAAG---16716713869-3871
ORF1ab/nsp3384K384QK1202QnonsynAagCag666613869-3871
ORF1ab/nsp3384K384TK1202TnonsynaAgaCg585813869-3871
ORF1ab/nsp3384K384MK1202MnonsynaAgaTg171713869-3871
ORF1ab/nsp3384K384del1K1202del1delaaGaa-1113869-3871
ORF1ab/nsp3384K384del2K1202del2delAAG--N1113869-3871
ORF1ab/nsp3384K384XK1202XnonsynAagTag1113869-3871
ORF1ab/nsp3384K384DK1202DnonsynAaGGaT1113869-3871

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF1ab/nsp3384K384NaaGaaT1601816124All0.003064
ORF1ab/nsp3384K384NaaGaaC10616124All0.00002
ORF1ab/nsp3384K384NaaGaaT42904336AY.40.006677
ORF1ab/nsp3384K384NaaGaaC464336AY.40.000072
ORF1ab/nsp3384K384NaaGaaT12991302B.1.1390.952346
ORF1ab/nsp3384K384NaaGaaC31302B.1.1390.002199
ORF1ab/nsp3384K384NaaGaaT12121212B.1.5650.982172
ORF1ab/nsp3384K384NaaGaaT11691175B.1.1.70.001047
ORF1ab/nsp3384K384NaaGaaC61175B.1.1.70.000005
ORF1ab/nsp3384K384NaaGaaT822822B.1.1.3160.760407
ORF1ab/nsp3384K384NaaGaaT770770B.1.1600.024014
ORF1ab/nsp3384K384NaaGaaT721721B.1.1.5190.028632
ORF1ab/nsp3384K384NaaGaaT569569B.1.351.20.172163
ORF1ab/nsp3384K384NaaGaaT566567B.1.617.20.002131
ORF1ab/nsp3384K384NaaGaaC1567B.1.617.20.000004
ORF1ab/nsp3384K384NaaGaaT453453B.1.36.251
ORF1ab/nsp3384K384EAagGag390390All0.000075
ORF1ab/nsp3384K384KaaGaaA324324All0.000062
ORF1ab/nsp3384K384RaAgaGg268270All0.000051
ORF1ab/nsp3384K384RaAGaGA2270All0
ORF1ab/nsp3384K384NaaGaaT266266AY.670.123491
ORF1ab/nsp3384K384NaaGaaT215215AY.4.20.004663
ORF1ab/nsp3384K384NaaGaaT196196AY.440.001193
ORF1ab/nsp3384K384NaaGaaT192195B.10.001759
ORF1ab/nsp3384K384NaaGaaC3195B.10.000027
ORF1ab/nsp3384K384NaaGaaT184184AY.430.000815
ORF1ab/nsp3384K384NaaGaaT169169AY.1030.001049
ORF1ab/nsp3384K384delAAG---167167All0.000032
ORF1ab/nsp3384K384NaaGaaT154156P.10.002426
ORF1ab/nsp3384K384NaaGaaC2156P.10.000032
ORF1ab/nsp3384K384NaaGaaT149150B.1.20.001312
ORF1ab/nsp3384K384NaaGaaC1150B.1.20.000009
ORF1ab/nsp3384K384NaaGaaT146146B.1.3781
ORF1ab/nsp3384K384NaaGaaT138138B.1.160.90.992806
ORF1ab/nsp3384K384EAagGag132132AY.40.000205
ORF1ab/nsp3384K384RaAgaGg129129B.1.1770.001699
ORF1ab/nsp3384K384NaaGaaT99116AY.250.000595
ORF1ab/nsp3384K384NaaGaaC17116AY.250.000102
ORF1ab/nsp3384K384NaaGaaT9797B.1.3510.002883
ORF1ab/nsp3384K384NaaGaaT8989AY.4.2.10.01326
ORF1ab/nsp3384K384NaaGaaT8687B.1.10.00156
ORF1ab/nsp3384K384NaaGaaC187B.1.10.000018
ORF1ab/nsp3384K384NaaGaaT7777AY.980.006083
ORF1ab/nsp3384K384NaaGaaT7373AY.30.000726
ORF1ab/nsp3384K384NaaGaaT7373AY.50.001507
ORF1ab/nsp3384K384NaaGaaT7272AY.98.10.003487
ORF1ab/nsp3384K384NaaGaaT6969R.21
ORF1ab/nsp3384K384QAagCag6666All0.000013
ORF1ab/nsp3384K384NaaGaaT6060AY.4.50.00645
ORF1ab/nsp3384K384NaaGaaT6060AY.970.102041
ORF1ab/nsp3384K384EAagGag5959B.1.1.70.000053
ORF1ab/nsp3384K384TaAgaCg5858All0.000011
ORF1ab/nsp3384K384EAagGag5858B.1.4710.15847
ORF1ab/nsp3384K384NaaGaaT5252AY.390.001285
ORF1ab/nsp3384K384QAagCag5151AY.490.162939
ORF1ab/nsp3384K384NaaGaaT4949B.1.258.170.005095
ORF1ab/nsp3384K384delAAG---4848AY.440.000292
ORF1ab/nsp3384K384KaaGaaA4646AY.40.000072
ORF1ab/nsp3384K384EAagGag4545B.1.4290.001059
ORF1ab/nsp3384K384KaaGaaA4444B.1.1.70.000039
ORF1ab/nsp3384K384NaaGaaT4242AY.260.001189
ORF1ab/nsp3384K384KaaGaaA4242AY.440.000256
ORF1ab/nsp3384K384KaaGaaA3939B.1.617.20.000147
ORF1ab/nsp3384K384NaaGaaT3838AY.1020.001008
ORF1ab/nsp3384K384NaaGaaT3737AY.4.40.015139
ORF1ab/nsp3384K384NaaGaaT3434AY.200.001321
ORF1ab/nsp3384K384NaaGaaT3434B.1.1.2140.001886
ORF1ab/nsp3384K384NaaGaaT3333B.1.1.2840.003544
ORF1ab/nsp3384K384KaaGaaA3131AY.1020.000822
ORF1ab/nsp3384K384NaaGaaT3030B.1.1770.000395
ORF1ab/nsp3384K384RaAgaGg2828AY.40.000044
ORF1ab/nsp3384K384NaaGaaT2828AY.900.019165
ORF1ab/nsp3384K384NaaGaaT2727B.1.5260.000635
ORF1ab/nsp3384K384NaaGaaT2727B.1.5960.002353
ORF1ab/nsp3384K384NaaGaaT2727C.370.003134
ORF1ab/nsp3384K384TaAgaCg2626B.1.1.70.000023
ORF1ab/nsp3384K384NaaGaaT2222AY.1000.001012
ORF1ab/nsp3384K384NaaGaaT2222B.1.3110.006041
ORF1ab/nsp3384K384NaaGaaT2122D.20.001576
ORF1ab/nsp3384K384NaaGaaC122D.20.000075
ORF1ab/nsp3384K384NaaGaaT2121B.1.1.2220.004284
ORF1ab/nsp3384K384NaaGaaT2020B.1.2210.001421
ORF1ab/nsp3384K384delAAG---1919B.1.1.70.000017
ORF1ab/nsp3384K384NaaGaaT1919B.1.177.20.086364
ORF1ab/nsp3384K384NaaGaaT1818AY.330.001202
ORF1ab/nsp3384K384NaaGaaT1718AY.580.015426
ORF1ab/nsp3384K384NaaGaaC118AY.580.000907
ORF1ab/nsp3384K384MaAgaTg1717All0.000003
ORF1ab/nsp3384K384NaaGaaT1717B.1.2430.001183
ORF1ab/nsp3384K384EAagGag1616AY.440.000097
ORF1ab/nsp3384K384NaaGaaT1616B.1.1.3060.007014
ORF1ab/nsp3384K384NaaGaaT1616B.1.1.4160.01448
ORF1ab/nsp3384K384RaAgaGg1616B.1.1.70.000014
ORF1ab/nsp3384K384NaaGaaT1616B.1.4290.000376
ORF1ab/nsp3384K384NaaGaaT1616B.1.4530.05178
ORF1ab/nsp3384K384NaaGaaT1515AY.450.001825
ORF1ab/nsp3384K384NaaGaaT1515B.1.1.3170.006175
ORF1ab/nsp3384K384KaaGaaA1515B.1.5260.000353
ORF1ab/nsp3384K384NaaGaaT1114AY.1200.000409
ORF1ab/nsp3384K384NaaGaaC314AY.1200.000112
ORF1ab/nsp3384K384delAAG---1414AY.40.000022
ORF1ab/nsp3384K384NaaGaaT1414B.1.1.2160.012467
ORF1ab/nsp3384K384EAagGag1414B.1.617.20.000053
ORF1ab/nsp3384K384NaaGaaT1313AY.1210.001759
ORF1ab/nsp3384K384NaaGaaT1313AY.460.001353
ORF1ab/nsp3384K384RaAgaGg1212AY.1030.000075
ORF1ab/nsp3384K384NaaGaaT1212AY.1180.000752
ORF1ab/nsp3384K384NaaGaaT1112AY.290.000174
ORF1ab/nsp3384K384NaaGaaC112AY.290.000016
ORF1ab/nsp3384K384NaaGaaT712AY.39.10.000277
ORF1ab/nsp3384K384NaaGaaC512AY.39.10.000198
ORF1ab/nsp3384K384NaaGaaT1212AY.5.40.00332
ORF1ab/nsp3384K384NaaGaaT1212B.1.177.330.019737
ORF1ab/nsp3384K384NaaGaaT1112B.1.360.001605
ORF1ab/nsp3384K384NaaGaaC112B.1.360.000146
ORF1ab/nsp3384K384NaaGaaT1212B.1.36.80.012
ORF1ab/nsp3384K384NaaGaaT1111AY.340.001067
ORF1ab/nsp3384K384NaaGaaT1111AY.470.000342
ORF1ab/nsp3384K384NaaGaaT1111AY.610.001153
ORF1ab/nsp3384K384NaaGaaT1111B0.001406
ORF1ab/nsp3384K384NaaGaaT1111B.1.1.280.003424
ORF1ab/nsp3384K384KaaGaaA1111B.1.1.630.004244
ORF1ab/nsp3384K384NaaGaaT1111B.1.177.210.000841
ORF1ab/nsp3384K384NaaGaaT1111B.1.4270.000555
ORF1ab/nsp3384K384RaAgaGg1111P.10.000173
ORF1ab/nsp3384K384TaAgaCg1010AY.250.00006
ORF1ab/nsp3384K384NaaGaaT1010AY.750.00056
ORF1ab/nsp3384K384NaaGaaT1010AY.930.002731
ORF1ab/nsp3384K384RaAgaGg1010B.1.177.70.001649
ORF1ab/nsp3384K384NaaGaaT1010B.1.4560.03268
ORF1ab/nsp3384K384NaaGaaT1010B.1.5250.001132
ORF1ab/nsp3384K384NaaGaaT1010B.1.617.10.00129
ORF1ab/nsp3384K384NaaGaaT89AY.1130.001139
ORF1ab/nsp3384K384NaaGaaC19AY.1130.000142
ORF1ab/nsp3384K384NaaGaaT99AY.140.000792
ORF1ab/nsp3384K384EAagGag99AY.250.000054
ORF1ab/nsp3384K384NaaGaaT99AY.420.000362
ORF1ab/nsp3384K384RaAgaGg99AY.440.000055
ORF1ab/nsp3384K384NaaGaaT99R.10.00081
ORF1ab/nsp3384K384NaaGaaT88AY.1010.003923
ORF1ab/nsp3384K384TaAgaCg88AY.1020.000212
ORF1ab/nsp3384K384NaaGaaT88AY.230.000558
ORF1ab/nsp3384K384KaaGaaA88AY.30.00008
ORF1ab/nsp3384K384NaaGaaT88AY.46.20.005083
ORF1ab/nsp3384K384EAagGag88B.10.000073
ORF1ab/nsp3384K384KaaGaaA88B.1.1620.040201
ORF1ab/nsp3384K384NaaGaaT88B.1.2580.000532
ORF1ab/nsp3384K384NaaGaaT88B.1.5950.002088
ORF1ab/nsp3384K384NaaGaaT88P.20.001493
ORF1ab/nsp3384K384KaaGaaA77AY.200.000272
ORF1ab/nsp3384K384NaaGaaT77B.1.177.780.067961
ORF1ab/nsp3384K384delAAG---77B.1.20.000062
ORF1ab/nsp3384K384EAagGag77B.1.4270.000353
ORF1ab/nsp3384K384NaaGaaT77B.1.466.20.002739
ORF1ab/nsp3384K384NaaGaaC77B.1.5490.05036
ORF1ab/nsp3384K384NaaGaaT77B.1.5760.006346
ORF1ab/nsp3384K384NaaGaaT77B.1.6360.04698
ORF1ab/nsp3384K384NaaGaaT77B.1.930.006536
ORF1ab/nsp3384K384NaaGaaT77C.180.018135
ORF1ab/nsp3384K384NaaGaaT77P.1.100.001886
ORF1ab/nsp3384K384NaaGaaT66AY.1060.002009
ORF1ab/nsp3384K384NaaGaaT66AY.1190.000212
ORF1ab/nsp3384K384NaaGaaT66AY.60.000247
ORF1ab/nsp3384K384NaaGaaT66AY.90.000406
ORF1ab/nsp3384K384NaaGaaT66AY.920.001724
ORF1ab/nsp3384K384NaaGaaT66AY.950.004566
ORF1ab/nsp3384K384delAAG---66B.10.000055
ORF1ab/nsp3384K384NaaGaaT66B.1.1.250.003411
ORF1ab/nsp3384K384NaaGaaT66B.1.177.600.001311
ORF1ab/nsp3384K384NaaGaaT66B.1.36.290.003104
ORF1ab/nsp3384K384KaaGaaA66B.1.4270.000303
ORF1ab/nsp3384K384NaaGaaT66B.1.5670.02
ORF1ab/nsp3384K384NaaGaaT66B.1.6090.002876
ORF1ab/nsp3384K384KaaGaaA66B.1.6230.003219
ORF1ab/nsp3384K384NaaGaaT55AM.40.017857
ORF1ab/nsp3384K384delAAG---55AY.250.00003
ORF1ab/nsp3384K384KaaGaaA55AY.430.000022
ORF1ab/nsp3384K384RaAgaGg55B.10.000046
ORF1ab/nsp3384K384delAAG---55B.1.5960.000436
ORF1ab/nsp3384K384NaaGaaT55B.1.6270.010101
ORF1ab/nsp3384K384NaaGaaT55Q.80.000825
ORF1ab/nsp3384K384NaaGaaT44AD.20.000876
ORF1ab/nsp3384K384NaaGaaT44AY.1050.002572
ORF1ab/nsp3384K384NaaGaaT44AY.120.001264
ORF1ab/nsp3384K384NaaGaaT44AY.16.10.00188
ORF1ab/nsp3384K384RaAgaGg44AY.250.000024
ORF1ab/nsp3384K384MaAgaTg44AY.40.000006
ORF1ab/nsp3384K384NaaGaaT44AY.46.60.000289
ORF1ab/nsp3384K384NaaGaaT44AY.630.001547
ORF1ab/nsp3384K384NaaGaaT44AY.680.001095
ORF1ab/nsp3384K384NaaGaaT34AY.9.20.00011
ORF1ab/nsp3384K384NaaGaaC14AY.9.20.000037
ORF1ab/nsp3384K384NaaGaaT44B.1.1.2540.044944
ORF1ab/nsp3384K384delAAG---44B.1.1.3170.001647
ORF1ab/nsp3384K384NaaGaaT44B.1.1.370.000771
ORF1ab/nsp3384K384NaaGaaT44B.1.1.3720.002755
ORF1ab/nsp3384K384NaaGaaT44B.1.1.630.001543
ORF1ab/nsp3384K384MaAgaTg44B.1.1.70.000004
ORF1ab/nsp3384K384QAagCag44B.1.1.70.000004
ORF1ab/nsp3384K384delAAG---44B.1.1770.000053
ORF1ab/nsp3384K384NaaGaaT44B.1.177.120.000607
ORF1ab/nsp3384K384KaaGaaA44B.1.20.000035
ORF1ab/nsp3384K384NaaGaaT44B.1.3960.002823
ORF1ab/nsp3384K384KaaGaaA44B.1.5250.000453
ORF1ab/nsp3384K384NaaGaaT44B.1.6370.000292
ORF1ab/nsp3384K384NaaGaaT44P.1.140.000191
ORF1ab/nsp3384K384NaaGaaT44Q.10.000505
ORF1ab/nsp3384K384EAagGag33AY.1000.000138
ORF1ab/nsp3384K384KaaGaaA33AY.1030.000019
ORF1ab/nsp3384K384NaaGaaT33AY.1140.000693
ORF1ab/nsp3384K384NaaGaaT33AY.130.000483
ORF1ab/nsp3384K384NaaGaaT33AY.160.001139
ORF1ab/nsp3384K384NaaGaaT33AY.190.003421
ORF1ab/nsp3384K384RaAgaGg33AY.30.00003
ORF1ab/nsp3384K384RaAgaGg33AY.3.10.000256
ORF1ab/nsp3384K384NaaGaaT33AY.360.000445
ORF1ab/nsp3384K384KaaGaaA33AY.390.000074
ORF1ab/nsp3384K384EAagGag33AY.540.000286
ORF1ab/nsp3384K384NaaGaaT33AY.590.001589
ORF1ab/nsp3384K384NaaGaaT33AY.620.001307
ORF1ab/nsp3384K384NaaGaaT33AY.790.003632
ORF1ab/nsp3384K384NaaGaaT33AY.810.005976
ORF1ab/nsp3384K384NaaGaaT33AY.9.10.000251
ORF1ab/nsp3384K384NaaGaaT33AY.99.20.000276
ORF1ab/nsp3384K384KaaGaaA33B.1.10.000054
ORF1ab/nsp3384K384NaaGaaT33B.1.177.810.000568
ORF1ab/nsp3384K384NaaGaaT33B.1.3360.007317
ORF1ab/nsp3384K384NaaGaaT33B.1.438.10.000322
ORF1ab/nsp3384K384delAAG---33B.1.5250.000339
ORF1ab/nsp3384K384NaaGaaT33B.1.5510.003871
ORF1ab/nsp3384K384delAAG---33B.1.617.20.000011
ORF1ab/nsp3384K384NaaGaaT33B.1.6190.002613
ORF1ab/nsp3384K384NaaGaaT33C.160.003181
ORF1ab/nsp3384K384NaaGaaT33P.1.70.000958
ORF1ab/nsp3384K384RaAGaGA120.055556
ORF1ab/nsp3384K384RaAgaGg120.055556
ORF1ab/nsp3384K384NaaGaaT22A.2.5.20.003145
ORF1ab/nsp3384K384NaaGaaT22A.23.10.001408
ORF1ab/nsp3384K384KaaGaaA22AY.1000.000092
ORF1ab/nsp3384K384NaaGaaT22AY.1100.000225
ORF1ab/nsp3384K384NaaGaaT22AY.1160.000574
ORF1ab/nsp3384K384NaaGaaT22AY.116.10.000623
ORF1ab/nsp3384K384MaAgaTg22AY.1180.000125
ORF1ab/nsp3384K384EAagGag22AY.130.000322
ORF1ab/nsp3384K384delAAG---22AY.160.000759
ORF1ab/nsp3384K384NaaGaaT22AY.20.000712
ORF1ab/nsp3384K384KaaGaaA22AY.270.000129
ORF1ab/nsp3384K384NaaGaaT22AY.370.000632
ORF1ab/nsp3384K384NaaGaaT22AY.380.000999
ORF1ab/nsp3384K384EAagGag22AY.390.000049
ORF1ab/nsp3384K384TaAgaCg22AY.40.000003
ORF1ab/nsp3384K384delAAG---22AY.430.000009
ORF1ab/nsp3384K384NaaGaaT22AY.46.10.002053
ORF1ab/nsp3384K384EAagGag22AY.46.40.000329
ORF1ab/nsp3384K384RaAgaGg22AY.630.000774
ORF1ab/nsp3384K384NaaGaaT22AY.710.00095
ORF1ab/nsp3384K384KaaGaaA22AY.750.000112
ORF1ab/nsp3384K384delAAG---22AY.75.10.000361
ORF1ab/nsp3384K384NaaGaaT22AY.75.10.000361
ORF1ab/nsp3384K384NaaGaaT22AY.840.000875
ORF1ab/nsp3384K384KaaGaaA22AY.9.20.000073
ORF1ab/nsp3384K384NaaGaaT12AY.910.00073
ORF1ab/nsp3384K384NaaGaaC12AY.910.00073
ORF1ab/nsp3384K384RaAgaGg22AY.98.10.000097
ORF1ab/nsp3384K384delAAG---22B.1.10.000036
ORF1ab/nsp3384K384KaaGaaA22B.1.1.1390.045455
ORF1ab/nsp3384K384NaaGaaT22B.1.1.1580.02439
ORF1ab/nsp3384K384EAagGag22B.1.1.1890.003026
ORF1ab/nsp3384K384NaaGaaT22B.1.1.2850.013072
ORF1ab/nsp3384K384NaaGaaT22B.1.1.2910.001485
ORF1ab/nsp3384K384NaaGaaT22B.1.1.2940.002532
ORF1ab/nsp3384K384KaaGaaA22B.1.1.2980.001724
ORF1ab/nsp3384K384NaaGaaT22B.1.1.3180.000604
ORF1ab/nsp3384K384NaaGaaT22B.1.1.3350.025974
ORF1ab/nsp3384K384NaaGaaT22B.1.1.390.001019
ORF1ab/nsp3384K384NaaGaaT22B.1.1.460.008734
ORF1ab/nsp3384K384NaaGaaT22B.1.1570.00597
ORF1ab/nsp3384K384NaaGaaT22B.1.177.150.001262
ORF1ab/nsp3384K384NaaGaaT22B.1.177.560.001335
ORF1ab/nsp3384K384QAagCag22B.1.20.000018
ORF1ab/nsp3384K384EAagGag22B.1.258.170.000208
ORF1ab/nsp3384K384KaaGaaA22B.1.3510.000059
ORF1ab/nsp3384K384KaaGaaA22B.1.360.000292
ORF1ab/nsp3384K384NaaGaaT22B.1.36.170.000988
ORF1ab/nsp3384K384NaaGaaT22B.1.36.190.018519
ORF1ab/nsp3384K384NaaGaaT22B.1.36.220.002415
ORF1ab/nsp3384K384delAAG---22B.1.4290.000047
ORF1ab/nsp3384K384NaaGaaT22B.1.4690.00722
ORF1ab/nsp3384K384delAAG---22B.1.5260.000047
ORF1ab/nsp3384K384NaaGaaT22B.1.5380.016129
ORF1ab/nsp3384K384NaaGaaT22B.1.5700.005882
ORF1ab/nsp3384K384NaaGaaT22B.1.5860.021978
ORF1ab/nsp3384K384delAAG---22B.1.5950.000522
ORF1ab/nsp3384K384EAagGag22B.1.5970.009259
ORF1ab/nsp3384K384RaAgaGg22B.1.617.20.000008
ORF1ab/nsp3384K384TaAgaCg22B.1.617.20.000008
ORF1ab/nsp3384K384QAagCag22B.1.617.20.000008
ORF1ab/nsp3384K384NaaGaaT22B.1.6200.001892
ORF1ab/nsp3384K384delAAG---22B.1.6210.000177
ORF1ab/nsp3384K384NaaGaaT22B.1.6210.000177
ORF1ab/nsp3384K384NaaGaaT22B.1.621.10.001012
ORF1ab/nsp3384K384NaaGaaT22C.350.001548
ORF1ab/nsp3384K384KaaGaaA22C.370.000232
ORF1ab/nsp3384K384NaaGaaT22D.50.00995
ORF1ab/nsp3384K384delAAG---22P.1.120.000968
ORF1ab/nsp3384K384KaaGaaA110.055556
ORF1ab/nsp3384K384NaaGaaT11A0.000387
ORF1ab/nsp3384K384TaAgaCg11A.10.000282
ORF1ab/nsp3384K384TaAgaCg11A.23.10.000704
ORF1ab/nsp3384K384KaaGaaA11A.23.10.000704
ORF1ab/nsp3384K384EAagGag11AD.20.000219
ORF1ab/nsp3384K384del2AAG--N11All0
ORF1ab/nsp3384K384del1aaGaa-11All0
ORF1ab/nsp3384K384XAagTag11All0
ORF1ab/nsp3384K384DAaGGaT11All0
ORF1ab/nsp3384K384NaaGaaT11AY.10.000396
ORF1ab/nsp3384K384NaaGaaT11AY.100.00053
ORF1ab/nsp3384K384KaaGaaA11AY.1010.00049
ORF1ab/nsp3384K384RaAgaGg11AY.1010.00049
ORF1ab/nsp3384K384TaAgaCg11AY.1030.000006
ORF1ab/nsp3384K384NaaGaaT11AY.1080.001103
ORF1ab/nsp3384K384RaAgaGg11AY.1100.000113
ORF1ab/nsp3384K384NaaGaaT11AY.1110.000183
ORF1ab/nsp3384K384RaAgaGg11AY.1130.000142
ORF1ab/nsp3384K384QAagCag11AY.1140.000231
ORF1ab/nsp3384K384NaaGaaT11AY.1170.000085
ORF1ab/nsp3384K384KaaGaaA11AY.1190.000035
ORF1ab/nsp3384K384RaAgaGg11AY.1200.000037
ORF1ab/nsp3384K384NaaGaaT11AY.120.2.10.000498
ORF1ab/nsp3384K384QAagCag11AY.130.000161
ORF1ab/nsp3384K384delAAG---11AY.130.000161
ORF1ab/nsp3384K384del2AAG--N11AY.16.10.00047
ORF1ab/nsp3384K384delAAG---11AY.190.00114
ORF1ab/nsp3384K384QAagCag11AY.200.000039
ORF1ab/nsp3384K384RaAgaGg11AY.200.000039
ORF1ab/nsp3384K384delAAG---11AY.200.000039
ORF1ab/nsp3384K384TaAgaCg11AY.230.00007
ORF1ab/nsp3384K384RaAgaGg11AY.230.00007
ORF1ab/nsp3384K384NaaGaaT11AY.240.000431
ORF1ab/nsp3384K384delAAG---11AY.260.000028
ORF1ab/nsp3384K384delAAG---11AY.290.000016
ORF1ab/nsp3384K384RaAgaGg11AY.290.000016
ORF1ab/nsp3384K384EAagGag11AY.290.000016
ORF1ab/nsp3384K384NaaGaaT11AY.29.10.000221
ORF1ab/nsp3384K384delAAG---11AY.30.00001
ORF1ab/nsp3384K384NaaGaaT11AY.300.000396
ORF1ab/nsp3384K384QAagCag11AY.300.000396
ORF1ab/nsp3384K384delAAG---11AY.330.000067
ORF1ab/nsp3384K384delAAG---11AY.390.000025
ORF1ab/nsp3384K384RaAgaGg11AY.390.000025
ORF1ab/nsp3384K384QAagCag11AY.40.000002
ORF1ab/nsp3384K384RaAgaGg11AY.4.20.000022
ORF1ab/nsp3384K384NaaGaaT11AY.4.30.000842
ORF1ab/nsp3384K384delAAG---11AY.4.50.000107
ORF1ab/nsp3384K384NaaGaaT11AY.400.000964
ORF1ab/nsp3384K384NaaGaaT11AY.410.000294
ORF1ab/nsp3384K384RaAgaGg11AY.420.00004
ORF1ab/nsp3384K384MaAgaTg11AY.420.00004
ORF1ab/nsp3384K384MaAgaTg11AY.430.000004
ORF1ab/nsp3384K384TaAgaCg11AY.440.000006
ORF1ab/nsp3384K384KaaGaaA11AY.46.40.000165
ORF1ab/nsp3384K384NaaGaaT11AY.46.50.000198
ORF1ab/nsp3384K384delAAG---11AY.470.000031
ORF1ab/nsp3384K384KaaGaaA11AY.50.000021
ORF1ab/nsp3384K384TaAgaCg11AY.50.000021
ORF1ab/nsp3384K384delAAG---11AY.5.30.000337
ORF1ab/nsp3384K384NaaGaaT11AY.520.000814
ORF1ab/nsp3384K384NaaGaaT11AY.530.000288
ORF1ab/nsp3384K384NaaGaaC11AY.540.000095
ORF1ab/nsp3384K384NaaGaaT11AY.550.000917
ORF1ab/nsp3384K384KaaGaaA11AY.570.000656
ORF1ab/nsp3384K384delAAG---11AY.60.000041
ORF1ab/nsp3384K384TaAgaCg11AY.60.000041
ORF1ab/nsp3384K384KaaGaaA11AY.610.000105
ORF1ab/nsp3384K384EAagGag11AY.650.000533
ORF1ab/nsp3384K384NaaGaaT11AY.650.000533
ORF1ab/nsp3384K384EAagGag11AY.70.000196
ORF1ab/nsp3384K384NaaGaaT11AY.7.20.000559
ORF1ab/nsp3384K384NaaGaaT11AY.720.001361
ORF1ab/nsp3384K384RaAgaGg11AY.740.000116
ORF1ab/nsp3384K384EAagGag11AY.750.000056
ORF1ab/nsp3384K384NaaGaaT11AY.780.001541
ORF1ab/nsp3384K384NaaGaaC11AY.80.000606
ORF1ab/nsp3384K384NaaGaaT11AY.820.001357
ORF1ab/nsp3384K384NaaGaaT11AY.850.000427
ORF1ab/nsp3384K384NaaGaaT11AY.940.000443
ORF1ab/nsp3384K384delAAG---11AY.940.000443
ORF1ab/nsp3384K384RaAgaGg11AY.960.002075
ORF1ab/nsp3384K384TaAgaCg11AY.980.000079
ORF1ab/nsp3384K384EAagGag11AY.98.10.000048
ORF1ab/nsp3384K384RaAgaGg11AY.99.10.001553
ORF1ab/nsp3384K384RaAgaGg11B0.000128
ORF1ab/nsp3384K384KaaGaaA11B.10.000009
ORF1ab/nsp3384K384QAagCag11B.1.10.000018
ORF1ab/nsp3384K384EAagGag11B.1.10.000018
ORF1ab/nsp3384K384TaAgaCg11B.1.10.000018
ORF1ab/nsp3384K384RaAgaGg11B.1.10.000018
ORF1ab/nsp3384K384KaaGaaA11B.1.1.1130.006993
ORF1ab/nsp3384K384NaaGaaT11B.1.1.1210.002427
ORF1ab/nsp3384K384NaaGaaT11B.1.1.1380.006061
ORF1ab/nsp3384K384NaaGaaT11B.1.1.1410.002012
ORF1ab/nsp3384K384NaaGaaT11B.1.1.160.055556
ORF1ab/nsp3384K384NaaGaaT11B.1.1.1770.019231
ORF1ab/nsp3384K384delAAG---11B.1.1.1920.002309
ORF1ab/nsp3384K384NaaGaaT11B.1.1.1960.005714
ORF1ab/nsp3384K384NaaGaaT11B.1.1.1980.001468
ORF1ab/nsp3384K384NaaGaaT11B.1.1.2000.007463
ORF1ab/nsp3384K384KaaGaaA11B.1.1.2070.001182
ORF1ab/nsp3384K384NaaGaaT11B.1.1.2200.001859
ORF1ab/nsp3384K384delAAG---11B.1.1.2210.010101
ORF1ab/nsp3384K384EAagGag11B.1.1.250.000569
ORF1ab/nsp3384K384EAagGag11B.1.1.260.005236
ORF1ab/nsp3384K384NaaGaaT11B.1.1.2620.015152
ORF1ab/nsp3384K384NaaGaaT11B.1.1.2630.001558
ORF1ab/nsp3384K384RaAgaGg11B.1.1.2630.001558
ORF1ab/nsp3384K384KaaGaaA11B.1.1.280.000311
ORF1ab/nsp3384K384TaAgaCg11B.1.1.2840.000107
ORF1ab/nsp3384K384NaaGaaT11B.1.1.3040.002809
ORF1ab/nsp3384K384KaaGaaA11B.1.1.3060.000438
ORF1ab/nsp3384K384NaaGaaT11B.1.1.3110.000358
ORF1ab/nsp3384K384delAAG---11B.1.1.3150.008475
ORF1ab/nsp3384K384RaAgaGg11B.1.1.3180.000302
ORF1ab/nsp3384K384NaaGaaT11B.1.1.3260.001761
ORF1ab/nsp3384K384NaaGaaT11B.1.1.3280.016949
ORF1ab/nsp3384K384delAAG---11B.1.1.330.000421
ORF1ab/nsp3384K384NaaGaaT11B.1.1.330.000421
ORF1ab/nsp3384K384NaaGaaT11B.1.1.3400.045455
ORF1ab/nsp3384K384NaaGaaT11B.1.1.3480.000796
ORF1ab/nsp3384K384EAagGag11B.1.1.370.000193
ORF1ab/nsp3384K384NaaGaaT11B.1.1.3890.006061
ORF1ab/nsp3384K384EAagGag11B.1.1.390.00051
ORF1ab/nsp3384K384NaaGaaT11B.1.1.4030.025641
ORF1ab/nsp3384K384MaAgaTg11B.1.1.4060.006494
ORF1ab/nsp3384K384NaaGaaT11B.1.1.4090.002833
ORF1ab/nsp3384K384NaaGaaT11B.1.1.4110.014706
ORF1ab/nsp3384K384NaaGaaT11B.1.1.4200.001006
ORF1ab/nsp3384K384RaAgaGg11B.1.1.4200.001006
ORF1ab/nsp3384K384EAagGag11B.1.1.4210.030303
ORF1ab/nsp3384K384NaaGaaT11B.1.1.50.008333
ORF1ab/nsp3384K384EAagGag11B.1.1.5190.00004
ORF1ab/nsp3384K384RaAgaGg11B.1.1.5190.00004
ORF1ab/nsp3384K384NaaGaaT11B.1.1.570.011494
ORF1ab/nsp3384K384XAagTag11B.1.1.70.000001
ORF1ab/nsp3384K384NaaGaaT11B.1.1.700.000341
ORF1ab/nsp3384K384NaaGaaT11B.1.110.30.000718
ORF1ab/nsp3384K384delAAG---11B.1.1400.018868
ORF1ab/nsp3384K384NaaGaaT11B.1.1430.021277
ORF1ab/nsp3384K384NaaGaaT11B.1.1530.018868
ORF1ab/nsp3384K384EAagGag11B.1.1600.000031
ORF1ab/nsp3384K384NaaGaaT11B.1.160.140.002119
ORF1ab/nsp3384K384NaaGaaT11B.1.160.280.002924
ORF1ab/nsp3384K384NaaGaaT11B.1.1700.00431
ORF1ab/nsp3384K384EAagGag11B.1.1770.000013
ORF1ab/nsp3384K384KaaGaaA11B.1.1770.000013
ORF1ab/nsp3384K384NaaGaaT11B.1.177.100.000878
ORF1ab/nsp3384K384EAagGag11B.1.177.210.000076
ORF1ab/nsp3384K384NaaGaaT11B.1.177.270.009434
ORF1ab/nsp3384K384delAAG---11B.1.177.40.000211
ORF1ab/nsp3384K384EAagGag11B.1.177.440.000519
ORF1ab/nsp3384K384NaaGaaT11B.1.177.540.000606
ORF1ab/nsp3384K384EAagGag11B.1.177.600.000218
ORF1ab/nsp3384K384NaaGaaT11B.1.177.730.000566
ORF1ab/nsp3384K384KaaGaaA11B.1.177.770.000726
ORF1ab/nsp3384K384NaaGaaT11B.1.177.770.000726
ORF1ab/nsp3384K384NaaGaaT11B.1.1890.004292
ORF1ab/nsp3384K384RaAgaGg11B.1.20.000009
ORF1ab/nsp3384K384del1aaGaa-11B.1.20.000009
ORF1ab/nsp3384K384MaAgaTg11B.1.20.000009
ORF1ab/nsp3384K384NaaGaaT11B.1.214.20.0006
ORF1ab/nsp3384K384NaaGaaC11B.1.2180.005155
ORF1ab/nsp3384K384delAAG---11B.1.2210.000071
ORF1ab/nsp3384K384delAAG---11B.1.2230.002778
ORF1ab/nsp3384K384KaaGaaA11B.1.2430.00007
ORF1ab/nsp3384K384RaAgaGg11B.1.2580.000067
ORF1ab/nsp3384K384NaaGaaT11B.1.258.110.000396
ORF1ab/nsp3384K384RaAgaGg11B.1.258.170.000104
ORF1ab/nsp3384K384delAAG---11B.1.258.170.000104
ORF1ab/nsp3384K384KaaGaaA11B.1.258.170.000104
ORF1ab/nsp3384K384NaaGaaC11B.1.2600.003344
ORF1ab/nsp3384K384NaaGaaT11B.1.3010.005917
ORF1ab/nsp3384K384EAagGag11B.1.3110.000275
ORF1ab/nsp3384K384NaaGaaT11B.1.3320.003497
ORF1ab/nsp3384K384NaaGaaT11B.1.3380.008621
ORF1ab/nsp3384K384RaAgaGg11B.1.3510.00003
ORF1ab/nsp3384K384delAAG---11B.1.3510.00003
ORF1ab/nsp3384K384delAAG---11B.1.351.20.000303
ORF1ab/nsp3384K384RaAgaGg11B.1.3560.001727
ORF1ab/nsp3384K384EAagGag11B.1.360.000146
ORF1ab/nsp3384K384RaAgaGg11B.1.360.000146
ORF1ab/nsp3384K384delAAG---11B.1.36.290.000517
ORF1ab/nsp3384K384NaaGaaT11B.1.36.350.002604
ORF1ab/nsp3384K384MaAgaTg11B.1.36.80.001
ORF1ab/nsp3384K384NaaGaaT11B.1.3610.001289
ORF1ab/nsp3384K384NaaGaaT11B.1.3750.00082
ORF1ab/nsp3384K384NaaGaaT11B.1.3800.006623
ORF1ab/nsp3384K384NaaGaaT11B.1.4160.001269
ORF1ab/nsp3384K384RaAgaGg11B.1.4290.000024
ORF1ab/nsp3384K384EAagGag11B.1.4360.001029
ORF1ab/nsp3384K384NaaGaaT11B.1.4360.001029
ORF1ab/nsp3384K384NaaGaaT11B.1.466.10.007194
ORF1ab/nsp3384K384KaaGaaA11B.1.5000.052632
ORF1ab/nsp3384K384EAagGag11B.1.5250.000113
ORF1ab/nsp3384K384NaaGaaT11B.1.5600.00463
ORF1ab/nsp3384K384NaaGaaT11B.1.5750.000303
ORF1ab/nsp3384K384NaaGaaT11B.1.575.10.002439
ORF1ab/nsp3384K384NaaGaaT11B.1.5820.000491
ORF1ab/nsp3384K384NaaGaaT11B.1.5880.00091
ORF1ab/nsp3384K384NaaGaaT11B.1.5900.004545
ORF1ab/nsp3384K384MaAgaTg11B.1.5960.000087
ORF1ab/nsp3384K384EAagGag11B.1.5960.000087
ORF1ab/nsp3384K384NaaGaaT11B.1.5970.00463
ORF1ab/nsp3384K384MaAgaTg11B.1.617.20.000004
ORF1ab/nsp3384K384RaAGaGA11B.1.617.30.002985
ORF1ab/nsp3384K384RaAgaGg11B.1.619.10.000641
ORF1ab/nsp3384K384DAaGGaT11B.1.6210.000089
ORF1ab/nsp3384K384NaaGaaT11B.1.6230.000536
ORF1ab/nsp3384K384NaaGaaT11B.1.6250.002353
ORF1ab/nsp3384K384EAagGag11B.1.6330.041667
ORF1ab/nsp3384K384RaAgaGg11B.350.007812
ORF1ab/nsp3384K384NaaGaaT11B.380.02381
ORF1ab/nsp3384K384NaaGaaT11B.40.002208
ORF1ab/nsp3384K384NaaGaaT11B.400.000364
ORF1ab/nsp3384K384RaAgaGg11B.400.000364
ORF1ab/nsp3384K384NaaGaaT11B.550.00295
ORF1ab/nsp3384K384delAAG---11B.570.015152
ORF1ab/nsp3384K384RaAgaGg11C.330.058824
ORF1ab/nsp3384K384NaaGaaT11C.360.000911
ORF1ab/nsp3384K384delAAG---11C.370.000116
ORF1ab/nsp3384K384NaaGaaT11D.30.005917
ORF1ab/nsp3384K384delAAG---11N.60.007092
ORF1ab/nsp3384K384delAAG---11P.10.000016
ORF1ab/nsp3384K384KaaGaaA11P.10.000016
ORF1ab/nsp3384K384NaaGaaT11P.1.10.000318
ORF1ab/nsp3384K384KaaGaaA11P.1.140.000048
ORF1ab/nsp3384K384NaaGaaT11P.1.150.000232
ORF1ab/nsp3384K384NaaGaaT11P.1.170.000162
ORF1ab/nsp3384K384NaaGaaT11P.30.001595
ORF1ab/nsp3384K384delAAG---11Q.20.000613
ORF1ab/nsp3384K384NaaGaaT11Q.40.000455
ORF1ab/nsp3384K384KaaGaaA11Q.70.001111
ORF1ab/nsp3384K384QAagCag11Q.80.000165
ORF1ab/nsp3384K384RaAgaGg11R.10.00009
ORF1ab/nsp3384K384delAAG---11R.10.00009

CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk

CoV-GLUE uses sequence data from GISAID. GISAID data provided via this web application is subject to GISAID's Terms and Conditions.