CoV-GLUE | Mutations | Mutation
Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):
ORF | CodonNum | Mut | ORF1abMut | MutType | RefCodon | MutCodon | AACount | CodonCount | CodonProp | Genome Position |
ORF1ab/nsp3 | 384 | K384N | K1202N | nonsyn | aaG | aaT | 16124 | 16018 | 0.993426 | 3869-3871 |
ORF1ab/nsp3 | 384 | K384N | K1202N | nonsyn | aaG | aaC | 16124 | 106 | 0.00657405 | 3869-3871 |
ORF1ab/nsp3 | 384 | K384E | K1202E | nonsyn | Aag | Gag | 390 | 390 | 1 | 3869-3871 |
ORF1ab/nsp3 | 384 | K384K | K1202K | syn | aaG | aaA | 324 | 324 | 1 | 3869-3871 |
ORF1ab/nsp3 | 384 | K384R | K1202R | nonsyn | aAg | aGg | 270 | 268 | 0.992593 | 3869-3871 |
ORF1ab/nsp3 | 384 | K384R | K1202R | nonsyn | aAG | aGA | 270 | 2 | 0.00740741 | 3869-3871 |
ORF1ab/nsp3 | 384 | K384del | K1202del | del | AAG | --- | 167 | 167 | 1 | 3869-3871 |
ORF1ab/nsp3 | 384 | K384Q | K1202Q | nonsyn | Aag | Cag | 66 | 66 | 1 | 3869-3871 |
ORF1ab/nsp3 | 384 | K384T | K1202T | nonsyn | aAg | aCg | 58 | 58 | 1 | 3869-3871 |
ORF1ab/nsp3 | 384 | K384M | K1202M | nonsyn | aAg | aTg | 17 | 17 | 1 | 3869-3871 |
ORF1ab/nsp3 | 384 | K384del1 | K1202del1 | del | aaG | aa- | 1 | 1 | 1 | 3869-3871 |
ORF1ab/nsp3 | 384 | K384del2 | K1202del2 | del | AAG | --N | 1 | 1 | 1 | 3869-3871 |
ORF1ab/nsp3 | 384 | K384X | K1202X | nonsyn | Aag | Tag | 1 | 1 | 1 | 3869-3871 |
ORF1ab/nsp3 | 384 | K384D | K1202D | nonsyn | AaG | GaT | 1 | 1 | 1 | 3869-3871 |
Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):
ORF | CodonNum | Mut | RefCodon | MutCodon | CodonCount | AACount | Lineage | LineageCodonProp |
ORF1ab/nsp3 | 384 | K384N | aaG | aaT | 16018 | 16124 | All | 0.003064 |
ORF1ab/nsp3 | 384 | K384N | aaG | aaC | 106 | 16124 | All | 0.00002 |
ORF1ab/nsp3 | 384 | K384N | aaG | aaT | 4290 | 4336 | AY.4 | 0.006677 |
ORF1ab/nsp3 | 384 | K384N | aaG | aaC | 46 | 4336 | AY.4 | 0.000072 |
ORF1ab/nsp3 | 384 | K384N | aaG | aaT | 1299 | 1302 | B.1.139 | 0.952346 |
ORF1ab/nsp3 | 384 | K384N | aaG | aaC | 3 | 1302 | B.1.139 | 0.002199 |
ORF1ab/nsp3 | 384 | K384N | aaG | aaT | 1212 | 1212 | B.1.565 | 0.982172 |
ORF1ab/nsp3 | 384 | K384N | aaG | aaT | 1169 | 1175 | B.1.1.7 | 0.001047 |
ORF1ab/nsp3 | 384 | K384N | aaG | aaC | 6 | 1175 | B.1.1.7 | 0.000005 |
ORF1ab/nsp3 | 384 | K384N | aaG | aaT | 822 | 822 | B.1.1.316 | 0.760407 |
ORF1ab/nsp3 | 384 | K384N | aaG | aaT | 770 | 770 | B.1.160 | 0.024014 |
ORF1ab/nsp3 | 384 | K384N | aaG | aaT | 721 | 721 | B.1.1.519 | 0.028632 |
ORF1ab/nsp3 | 384 | K384N | aaG | aaT | 569 | 569 | B.1.351.2 | 0.172163 |
ORF1ab/nsp3 | 384 | K384N | aaG | aaT | 566 | 567 | B.1.617.2 | 0.002131 |
ORF1ab/nsp3 | 384 | K384N | aaG | aaC | 1 | 567 | B.1.617.2 | 0.000004 |
ORF1ab/nsp3 | 384 | K384N | aaG | aaT | 453 | 453 | B.1.36.25 | 1 |
ORF1ab/nsp3 | 384 | K384E | Aag | Gag | 390 | 390 | All | 0.000075 |
ORF1ab/nsp3 | 384 | K384K | aaG | aaA | 324 | 324 | All | 0.000062 |
ORF1ab/nsp3 | 384 | K384R | aAg | aGg | 268 | 270 | All | 0.000051 |
ORF1ab/nsp3 | 384 | K384R | aAG | aGA | 2 | 270 | All | 0 |
ORF1ab/nsp3 | 384 | K384N | aaG | aaT | 266 | 266 | AY.67 | 0.123491 |
ORF1ab/nsp3 | 384 | K384N | aaG | aaT | 215 | 215 | AY.4.2 | 0.004663 |
ORF1ab/nsp3 | 384 | K384N | aaG | aaT | 196 | 196 | AY.44 | 0.001193 |
ORF1ab/nsp3 | 384 | K384N | aaG | aaT | 192 | 195 | B.1 | 0.001759 |
ORF1ab/nsp3 | 384 | K384N | aaG | aaC | 3 | 195 | B.1 | 0.000027 |
ORF1ab/nsp3 | 384 | K384N | aaG | aaT | 184 | 184 | AY.43 | 0.000815 |
ORF1ab/nsp3 | 384 | K384N | aaG | aaT | 169 | 169 | AY.103 | 0.001049 |
ORF1ab/nsp3 | 384 | K384del | AAG | --- | 167 | 167 | All | 0.000032 |
ORF1ab/nsp3 | 384 | K384N | aaG | aaT | 154 | 156 | P.1 | 0.002426 |
ORF1ab/nsp3 | 384 | K384N | aaG | aaC | 2 | 156 | P.1 | 0.000032 |
ORF1ab/nsp3 | 384 | K384N | aaG | aaT | 149 | 150 | B.1.2 | 0.001312 |
ORF1ab/nsp3 | 384 | K384N | aaG | aaC | 1 | 150 | B.1.2 | 0.000009 |
ORF1ab/nsp3 | 384 | K384N | aaG | aaT | 146 | 146 | B.1.378 | 1 |
ORF1ab/nsp3 | 384 | K384N | aaG | aaT | 138 | 138 | B.1.160.9 | 0.992806 |
ORF1ab/nsp3 | 384 | K384E | Aag | Gag | 132 | 132 | AY.4 | 0.000205 |
ORF1ab/nsp3 | 384 | K384R | aAg | aGg | 129 | 129 | B.1.177 | 0.001699 |
ORF1ab/nsp3 | 384 | K384N | aaG | aaT | 99 | 116 | AY.25 | 0.000595 |
ORF1ab/nsp3 | 384 | K384N | aaG | aaC | 17 | 116 | AY.25 | 0.000102 |
ORF1ab/nsp3 | 384 | K384N | aaG | aaT | 97 | 97 | B.1.351 | 0.002883 |
ORF1ab/nsp3 | 384 | K384N | aaG | aaT | 89 | 89 | AY.4.2.1 | 0.01326 |
ORF1ab/nsp3 | 384 | K384N | aaG | aaT | 86 | 87 | B.1.1 | 0.00156 |
ORF1ab/nsp3 | 384 | K384N | aaG | aaC | 1 | 87 | B.1.1 | 0.000018 |
ORF1ab/nsp3 | 384 | K384N | aaG | aaT | 77 | 77 | AY.98 | 0.006083 |
ORF1ab/nsp3 | 384 | K384N | aaG | aaT | 73 | 73 | AY.3 | 0.000726 |
ORF1ab/nsp3 | 384 | K384N | aaG | aaT | 73 | 73 | AY.5 | 0.001507 |
ORF1ab/nsp3 | 384 | K384N | aaG | aaT | 72 | 72 | AY.98.1 | 0.003487 |
ORF1ab/nsp3 | 384 | K384N | aaG | aaT | 69 | 69 | R.2 | 1 |
ORF1ab/nsp3 | 384 | K384Q | Aag | Cag | 66 | 66 | All | 0.000013 |
ORF1ab/nsp3 | 384 | K384N | aaG | aaT | 60 | 60 | AY.4.5 | 0.00645 |
ORF1ab/nsp3 | 384 | K384N | aaG | aaT | 60 | 60 | AY.97 | 0.102041 |
ORF1ab/nsp3 | 384 | K384E | Aag | Gag | 59 | 59 | B.1.1.7 | 0.000053 |
ORF1ab/nsp3 | 384 | K384T | aAg | aCg | 58 | 58 | All | 0.000011 |
ORF1ab/nsp3 | 384 | K384E | Aag | Gag | 58 | 58 | B.1.471 | 0.15847 |
ORF1ab/nsp3 | 384 | K384N | aaG | aaT | 52 | 52 | AY.39 | 0.001285 |
ORF1ab/nsp3 | 384 | K384Q | Aag | Cag | 51 | 51 | AY.49 | 0.162939 |
ORF1ab/nsp3 | 384 | K384N | aaG | aaT | 49 | 49 | B.1.258.17 | 0.005095 |
ORF1ab/nsp3 | 384 | K384del | AAG | --- | 48 | 48 | AY.44 | 0.000292 |
ORF1ab/nsp3 | 384 | K384K | aaG | aaA | 46 | 46 | AY.4 | 0.000072 |
ORF1ab/nsp3 | 384 | K384E | Aag | Gag | 45 | 45 | B.1.429 | 0.001059 |
ORF1ab/nsp3 | 384 | K384K | aaG | aaA | 44 | 44 | B.1.1.7 | 0.000039 |
ORF1ab/nsp3 | 384 | K384N | aaG | aaT | 42 | 42 | AY.26 | 0.001189 |
ORF1ab/nsp3 | 384 | K384K | aaG | aaA | 42 | 42 | AY.44 | 0.000256 |
ORF1ab/nsp3 | 384 | K384K | aaG | aaA | 39 | 39 | B.1.617.2 | 0.000147 |
ORF1ab/nsp3 | 384 | K384N | aaG | aaT | 38 | 38 | AY.102 | 0.001008 |
ORF1ab/nsp3 | 384 | K384N | aaG | aaT | 37 | 37 | AY.4.4 | 0.015139 |
ORF1ab/nsp3 | 384 | K384N | aaG | aaT | 34 | 34 | AY.20 | 0.001321 |
ORF1ab/nsp3 | 384 | K384N | aaG | aaT | 34 | 34 | B.1.1.214 | 0.001886 |
ORF1ab/nsp3 | 384 | K384N | aaG | aaT | 33 | 33 | B.1.1.284 | 0.003544 |
ORF1ab/nsp3 | 384 | K384K | aaG | aaA | 31 | 31 | AY.102 | 0.000822 |
ORF1ab/nsp3 | 384 | K384N | aaG | aaT | 30 | 30 | B.1.177 | 0.000395 |
ORF1ab/nsp3 | 384 | K384R | aAg | aGg | 28 | 28 | AY.4 | 0.000044 |
ORF1ab/nsp3 | 384 | K384N | aaG | aaT | 28 | 28 | AY.90 | 0.019165 |
ORF1ab/nsp3 | 384 | K384N | aaG | aaT | 27 | 27 | B.1.526 | 0.000635 |
ORF1ab/nsp3 | 384 | K384N | aaG | aaT | 27 | 27 | B.1.596 | 0.002353 |
ORF1ab/nsp3 | 384 | K384N | aaG | aaT | 27 | 27 | C.37 | 0.003134 |
ORF1ab/nsp3 | 384 | K384T | aAg | aCg | 26 | 26 | B.1.1.7 | 0.000023 |
ORF1ab/nsp3 | 384 | K384N | aaG | aaT | 22 | 22 | AY.100 | 0.001012 |
ORF1ab/nsp3 | 384 | K384N | aaG | aaT | 22 | 22 | B.1.311 | 0.006041 |
ORF1ab/nsp3 | 384 | K384N | aaG | aaT | 21 | 22 | D.2 | 0.001576 |
ORF1ab/nsp3 | 384 | K384N | aaG | aaC | 1 | 22 | D.2 | 0.000075 |
ORF1ab/nsp3 | 384 | K384N | aaG | aaT | 21 | 21 | B.1.1.222 | 0.004284 |
ORF1ab/nsp3 | 384 | K384N | aaG | aaT | 20 | 20 | B.1.221 | 0.001421 |
ORF1ab/nsp3 | 384 | K384del | AAG | --- | 19 | 19 | B.1.1.7 | 0.000017 |
ORF1ab/nsp3 | 384 | K384N | aaG | aaT | 19 | 19 | B.1.177.2 | 0.086364 |
ORF1ab/nsp3 | 384 | K384N | aaG | aaT | 18 | 18 | AY.33 | 0.001202 |
ORF1ab/nsp3 | 384 | K384N | aaG | aaT | 17 | 18 | AY.58 | 0.015426 |
ORF1ab/nsp3 | 384 | K384N | aaG | aaC | 1 | 18 | AY.58 | 0.000907 |
ORF1ab/nsp3 | 384 | K384M | aAg | aTg | 17 | 17 | All | 0.000003 |
ORF1ab/nsp3 | 384 | K384N | aaG | aaT | 17 | 17 | B.1.243 | 0.001183 |
ORF1ab/nsp3 | 384 | K384E | Aag | Gag | 16 | 16 | AY.44 | 0.000097 |
ORF1ab/nsp3 | 384 | K384N | aaG | aaT | 16 | 16 | B.1.1.306 | 0.007014 |
ORF1ab/nsp3 | 384 | K384N | aaG | aaT | 16 | 16 | B.1.1.416 | 0.01448 |
ORF1ab/nsp3 | 384 | K384R | aAg | aGg | 16 | 16 | B.1.1.7 | 0.000014 |
ORF1ab/nsp3 | 384 | K384N | aaG | aaT | 16 | 16 | B.1.429 | 0.000376 |
ORF1ab/nsp3 | 384 | K384N | aaG | aaT | 16 | 16 | B.1.453 | 0.05178 |
ORF1ab/nsp3 | 384 | K384N | aaG | aaT | 15 | 15 | AY.45 | 0.001825 |
ORF1ab/nsp3 | 384 | K384N | aaG | aaT | 15 | 15 | B.1.1.317 | 0.006175 |
ORF1ab/nsp3 | 384 | K384K | aaG | aaA | 15 | 15 | B.1.526 | 0.000353 |
ORF1ab/nsp3 | 384 | K384N | aaG | aaT | 11 | 14 | AY.120 | 0.000409 |
ORF1ab/nsp3 | 384 | K384N | aaG | aaC | 3 | 14 | AY.120 | 0.000112 |
ORF1ab/nsp3 | 384 | K384del | AAG | --- | 14 | 14 | AY.4 | 0.000022 |
ORF1ab/nsp3 | 384 | K384N | aaG | aaT | 14 | 14 | B.1.1.216 | 0.012467 |
ORF1ab/nsp3 | 384 | K384E | Aag | Gag | 14 | 14 | B.1.617.2 | 0.000053 |
ORF1ab/nsp3 | 384 | K384N | aaG | aaT | 13 | 13 | AY.121 | 0.001759 |
ORF1ab/nsp3 | 384 | K384N | aaG | aaT | 13 | 13 | AY.46 | 0.001353 |
ORF1ab/nsp3 | 384 | K384R | aAg | aGg | 12 | 12 | AY.103 | 0.000075 |
ORF1ab/nsp3 | 384 | K384N | aaG | aaT | 12 | 12 | AY.118 | 0.000752 |
ORF1ab/nsp3 | 384 | K384N | aaG | aaT | 11 | 12 | AY.29 | 0.000174 |
ORF1ab/nsp3 | 384 | K384N | aaG | aaC | 1 | 12 | AY.29 | 0.000016 |
ORF1ab/nsp3 | 384 | K384N | aaG | aaT | 7 | 12 | AY.39.1 | 0.000277 |
ORF1ab/nsp3 | 384 | K384N | aaG | aaC | 5 | 12 | AY.39.1 | 0.000198 |
ORF1ab/nsp3 | 384 | K384N | aaG | aaT | 12 | 12 | AY.5.4 | 0.00332 |
ORF1ab/nsp3 | 384 | K384N | aaG | aaT | 12 | 12 | B.1.177.33 | 0.019737 |
ORF1ab/nsp3 | 384 | K384N | aaG | aaT | 11 | 12 | B.1.36 | 0.001605 |
ORF1ab/nsp3 | 384 | K384N | aaG | aaC | 1 | 12 | B.1.36 | 0.000146 |
ORF1ab/nsp3 | 384 | K384N | aaG | aaT | 12 | 12 | B.1.36.8 | 0.012 |
ORF1ab/nsp3 | 384 | K384N | aaG | aaT | 11 | 11 | AY.34 | 0.001067 |
ORF1ab/nsp3 | 384 | K384N | aaG | aaT | 11 | 11 | AY.47 | 0.000342 |
ORF1ab/nsp3 | 384 | K384N | aaG | aaT | 11 | 11 | AY.61 | 0.001153 |
ORF1ab/nsp3 | 384 | K384N | aaG | aaT | 11 | 11 | B | 0.001406 |
ORF1ab/nsp3 | 384 | K384N | aaG | aaT | 11 | 11 | B.1.1.28 | 0.003424 |
ORF1ab/nsp3 | 384 | K384K | aaG | aaA | 11 | 11 | B.1.1.63 | 0.004244 |
ORF1ab/nsp3 | 384 | K384N | aaG | aaT | 11 | 11 | B.1.177.21 | 0.000841 |
ORF1ab/nsp3 | 384 | K384N | aaG | aaT | 11 | 11 | B.1.427 | 0.000555 |
ORF1ab/nsp3 | 384 | K384R | aAg | aGg | 11 | 11 | P.1 | 0.000173 |
ORF1ab/nsp3 | 384 | K384T | aAg | aCg | 10 | 10 | AY.25 | 0.00006 |
ORF1ab/nsp3 | 384 | K384N | aaG | aaT | 10 | 10 | AY.75 | 0.00056 |
ORF1ab/nsp3 | 384 | K384N | aaG | aaT | 10 | 10 | AY.93 | 0.002731 |
ORF1ab/nsp3 | 384 | K384R | aAg | aGg | 10 | 10 | B.1.177.7 | 0.001649 |
ORF1ab/nsp3 | 384 | K384N | aaG | aaT | 10 | 10 | B.1.456 | 0.03268 |
ORF1ab/nsp3 | 384 | K384N | aaG | aaT | 10 | 10 | B.1.525 | 0.001132 |
ORF1ab/nsp3 | 384 | K384N | aaG | aaT | 10 | 10 | B.1.617.1 | 0.00129 |
ORF1ab/nsp3 | 384 | K384N | aaG | aaT | 8 | 9 | AY.113 | 0.001139 |
ORF1ab/nsp3 | 384 | K384N | aaG | aaC | 1 | 9 | AY.113 | 0.000142 |
ORF1ab/nsp3 | 384 | K384N | aaG | aaT | 9 | 9 | AY.14 | 0.000792 |
ORF1ab/nsp3 | 384 | K384E | Aag | Gag | 9 | 9 | AY.25 | 0.000054 |
ORF1ab/nsp3 | 384 | K384N | aaG | aaT | 9 | 9 | AY.42 | 0.000362 |
ORF1ab/nsp3 | 384 | K384R | aAg | aGg | 9 | 9 | AY.44 | 0.000055 |
ORF1ab/nsp3 | 384 | K384N | aaG | aaT | 9 | 9 | R.1 | 0.00081 |
ORF1ab/nsp3 | 384 | K384N | aaG | aaT | 8 | 8 | AY.101 | 0.003923 |
ORF1ab/nsp3 | 384 | K384T | aAg | aCg | 8 | 8 | AY.102 | 0.000212 |
ORF1ab/nsp3 | 384 | K384N | aaG | aaT | 8 | 8 | AY.23 | 0.000558 |
ORF1ab/nsp3 | 384 | K384K | aaG | aaA | 8 | 8 | AY.3 | 0.00008 |
ORF1ab/nsp3 | 384 | K384N | aaG | aaT | 8 | 8 | AY.46.2 | 0.005083 |
ORF1ab/nsp3 | 384 | K384E | Aag | Gag | 8 | 8 | B.1 | 0.000073 |
ORF1ab/nsp3 | 384 | K384K | aaG | aaA | 8 | 8 | B.1.162 | 0.040201 |
ORF1ab/nsp3 | 384 | K384N | aaG | aaT | 8 | 8 | B.1.258 | 0.000532 |
ORF1ab/nsp3 | 384 | K384N | aaG | aaT | 8 | 8 | B.1.595 | 0.002088 |
ORF1ab/nsp3 | 384 | K384N | aaG | aaT | 8 | 8 | P.2 | 0.001493 |
ORF1ab/nsp3 | 384 | K384K | aaG | aaA | 7 | 7 | AY.20 | 0.000272 |
ORF1ab/nsp3 | 384 | K384N | aaG | aaT | 7 | 7 | B.1.177.78 | 0.067961 |
ORF1ab/nsp3 | 384 | K384del | AAG | --- | 7 | 7 | B.1.2 | 0.000062 |
ORF1ab/nsp3 | 384 | K384E | Aag | Gag | 7 | 7 | B.1.427 | 0.000353 |
ORF1ab/nsp3 | 384 | K384N | aaG | aaT | 7 | 7 | B.1.466.2 | 0.002739 |
ORF1ab/nsp3 | 384 | K384N | aaG | aaC | 7 | 7 | B.1.549 | 0.05036 |
ORF1ab/nsp3 | 384 | K384N | aaG | aaT | 7 | 7 | B.1.576 | 0.006346 |
ORF1ab/nsp3 | 384 | K384N | aaG | aaT | 7 | 7 | B.1.636 | 0.04698 |
ORF1ab/nsp3 | 384 | K384N | aaG | aaT | 7 | 7 | B.1.93 | 0.006536 |
ORF1ab/nsp3 | 384 | K384N | aaG | aaT | 7 | 7 | C.18 | 0.018135 |
ORF1ab/nsp3 | 384 | K384N | aaG | aaT | 7 | 7 | P.1.10 | 0.001886 |
ORF1ab/nsp3 | 384 | K384N | aaG | aaT | 6 | 6 | AY.106 | 0.002009 |
ORF1ab/nsp3 | 384 | K384N | aaG | aaT | 6 | 6 | AY.119 | 0.000212 |
ORF1ab/nsp3 | 384 | K384N | aaG | aaT | 6 | 6 | AY.6 | 0.000247 |
ORF1ab/nsp3 | 384 | K384N | aaG | aaT | 6 | 6 | AY.9 | 0.000406 |
ORF1ab/nsp3 | 384 | K384N | aaG | aaT | 6 | 6 | AY.92 | 0.001724 |
ORF1ab/nsp3 | 384 | K384N | aaG | aaT | 6 | 6 | AY.95 | 0.004566 |
ORF1ab/nsp3 | 384 | K384del | AAG | --- | 6 | 6 | B.1 | 0.000055 |
ORF1ab/nsp3 | 384 | K384N | aaG | aaT | 6 | 6 | B.1.1.25 | 0.003411 |
ORF1ab/nsp3 | 384 | K384N | aaG | aaT | 6 | 6 | B.1.177.60 | 0.001311 |
ORF1ab/nsp3 | 384 | K384N | aaG | aaT | 6 | 6 | B.1.36.29 | 0.003104 |
ORF1ab/nsp3 | 384 | K384K | aaG | aaA | 6 | 6 | B.1.427 | 0.000303 |
ORF1ab/nsp3 | 384 | K384N | aaG | aaT | 6 | 6 | B.1.567 | 0.02 |
ORF1ab/nsp3 | 384 | K384N | aaG | aaT | 6 | 6 | B.1.609 | 0.002876 |
ORF1ab/nsp3 | 384 | K384K | aaG | aaA | 6 | 6 | B.1.623 | 0.003219 |
ORF1ab/nsp3 | 384 | K384N | aaG | aaT | 5 | 5 | AM.4 | 0.017857 |
ORF1ab/nsp3 | 384 | K384del | AAG | --- | 5 | 5 | AY.25 | 0.00003 |
ORF1ab/nsp3 | 384 | K384K | aaG | aaA | 5 | 5 | AY.43 | 0.000022 |
ORF1ab/nsp3 | 384 | K384R | aAg | aGg | 5 | 5 | B.1 | 0.000046 |
ORF1ab/nsp3 | 384 | K384del | AAG | --- | 5 | 5 | B.1.596 | 0.000436 |
ORF1ab/nsp3 | 384 | K384N | aaG | aaT | 5 | 5 | B.1.627 | 0.010101 |
ORF1ab/nsp3 | 384 | K384N | aaG | aaT | 5 | 5 | Q.8 | 0.000825 |
ORF1ab/nsp3 | 384 | K384N | aaG | aaT | 4 | 4 | AD.2 | 0.000876 |
ORF1ab/nsp3 | 384 | K384N | aaG | aaT | 4 | 4 | AY.105 | 0.002572 |
ORF1ab/nsp3 | 384 | K384N | aaG | aaT | 4 | 4 | AY.12 | 0.001264 |
ORF1ab/nsp3 | 384 | K384N | aaG | aaT | 4 | 4 | AY.16.1 | 0.00188 |
ORF1ab/nsp3 | 384 | K384R | aAg | aGg | 4 | 4 | AY.25 | 0.000024 |
ORF1ab/nsp3 | 384 | K384M | aAg | aTg | 4 | 4 | AY.4 | 0.000006 |
ORF1ab/nsp3 | 384 | K384N | aaG | aaT | 4 | 4 | AY.46.6 | 0.000289 |
ORF1ab/nsp3 | 384 | K384N | aaG | aaT | 4 | 4 | AY.63 | 0.001547 |
ORF1ab/nsp3 | 384 | K384N | aaG | aaT | 4 | 4 | AY.68 | 0.001095 |
ORF1ab/nsp3 | 384 | K384N | aaG | aaT | 3 | 4 | AY.9.2 | 0.00011 |
ORF1ab/nsp3 | 384 | K384N | aaG | aaC | 1 | 4 | AY.9.2 | 0.000037 |
ORF1ab/nsp3 | 384 | K384N | aaG | aaT | 4 | 4 | B.1.1.254 | 0.044944 |
ORF1ab/nsp3 | 384 | K384del | AAG | --- | 4 | 4 | B.1.1.317 | 0.001647 |
ORF1ab/nsp3 | 384 | K384N | aaG | aaT | 4 | 4 | B.1.1.37 | 0.000771 |
ORF1ab/nsp3 | 384 | K384N | aaG | aaT | 4 | 4 | B.1.1.372 | 0.002755 |
ORF1ab/nsp3 | 384 | K384N | aaG | aaT | 4 | 4 | B.1.1.63 | 0.001543 |
ORF1ab/nsp3 | 384 | K384M | aAg | aTg | 4 | 4 | B.1.1.7 | 0.000004 |
ORF1ab/nsp3 | 384 | K384Q | Aag | Cag | 4 | 4 | B.1.1.7 | 0.000004 |
ORF1ab/nsp3 | 384 | K384del | AAG | --- | 4 | 4 | B.1.177 | 0.000053 |
ORF1ab/nsp3 | 384 | K384N | aaG | aaT | 4 | 4 | B.1.177.12 | 0.000607 |
ORF1ab/nsp3 | 384 | K384K | aaG | aaA | 4 | 4 | B.1.2 | 0.000035 |
ORF1ab/nsp3 | 384 | K384N | aaG | aaT | 4 | 4 | B.1.396 | 0.002823 |
ORF1ab/nsp3 | 384 | K384K | aaG | aaA | 4 | 4 | B.1.525 | 0.000453 |
ORF1ab/nsp3 | 384 | K384N | aaG | aaT | 4 | 4 | B.1.637 | 0.000292 |
ORF1ab/nsp3 | 384 | K384N | aaG | aaT | 4 | 4 | P.1.14 | 0.000191 |
ORF1ab/nsp3 | 384 | K384N | aaG | aaT | 4 | 4 | Q.1 | 0.000505 |
ORF1ab/nsp3 | 384 | K384E | Aag | Gag | 3 | 3 | AY.100 | 0.000138 |
ORF1ab/nsp3 | 384 | K384K | aaG | aaA | 3 | 3 | AY.103 | 0.000019 |
ORF1ab/nsp3 | 384 | K384N | aaG | aaT | 3 | 3 | AY.114 | 0.000693 |
ORF1ab/nsp3 | 384 | K384N | aaG | aaT | 3 | 3 | AY.13 | 0.000483 |
ORF1ab/nsp3 | 384 | K384N | aaG | aaT | 3 | 3 | AY.16 | 0.001139 |
ORF1ab/nsp3 | 384 | K384N | aaG | aaT | 3 | 3 | AY.19 | 0.003421 |
ORF1ab/nsp3 | 384 | K384R | aAg | aGg | 3 | 3 | AY.3 | 0.00003 |
ORF1ab/nsp3 | 384 | K384R | aAg | aGg | 3 | 3 | AY.3.1 | 0.000256 |
ORF1ab/nsp3 | 384 | K384N | aaG | aaT | 3 | 3 | AY.36 | 0.000445 |
ORF1ab/nsp3 | 384 | K384K | aaG | aaA | 3 | 3 | AY.39 | 0.000074 |
ORF1ab/nsp3 | 384 | K384E | Aag | Gag | 3 | 3 | AY.54 | 0.000286 |
ORF1ab/nsp3 | 384 | K384N | aaG | aaT | 3 | 3 | AY.59 | 0.001589 |
ORF1ab/nsp3 | 384 | K384N | aaG | aaT | 3 | 3 | AY.62 | 0.001307 |
ORF1ab/nsp3 | 384 | K384N | aaG | aaT | 3 | 3 | AY.79 | 0.003632 |
ORF1ab/nsp3 | 384 | K384N | aaG | aaT | 3 | 3 | AY.81 | 0.005976 |
ORF1ab/nsp3 | 384 | K384N | aaG | aaT | 3 | 3 | AY.9.1 | 0.000251 |
ORF1ab/nsp3 | 384 | K384N | aaG | aaT | 3 | 3 | AY.99.2 | 0.000276 |
ORF1ab/nsp3 | 384 | K384K | aaG | aaA | 3 | 3 | B.1.1 | 0.000054 |
ORF1ab/nsp3 | 384 | K384N | aaG | aaT | 3 | 3 | B.1.177.81 | 0.000568 |
ORF1ab/nsp3 | 384 | K384N | aaG | aaT | 3 | 3 | B.1.336 | 0.007317 |
ORF1ab/nsp3 | 384 | K384N | aaG | aaT | 3 | 3 | B.1.438.1 | 0.000322 |
ORF1ab/nsp3 | 384 | K384del | AAG | --- | 3 | 3 | B.1.525 | 0.000339 |
ORF1ab/nsp3 | 384 | K384N | aaG | aaT | 3 | 3 | B.1.551 | 0.003871 |
ORF1ab/nsp3 | 384 | K384del | AAG | --- | 3 | 3 | B.1.617.2 | 0.000011 |
ORF1ab/nsp3 | 384 | K384N | aaG | aaT | 3 | 3 | B.1.619 | 0.002613 |
ORF1ab/nsp3 | 384 | K384N | aaG | aaT | 3 | 3 | C.16 | 0.003181 |
ORF1ab/nsp3 | 384 | K384N | aaG | aaT | 3 | 3 | P.1.7 | 0.000958 |
ORF1ab/nsp3 | 384 | K384R | aAG | aGA | 1 | 2 | 0.055556 | |
ORF1ab/nsp3 | 384 | K384R | aAg | aGg | 1 | 2 | 0.055556 | |
ORF1ab/nsp3 | 384 | K384N | aaG | aaT | 2 | 2 | A.2.5.2 | 0.003145 |
ORF1ab/nsp3 | 384 | K384N | aaG | aaT | 2 | 2 | A.23.1 | 0.001408 |
ORF1ab/nsp3 | 384 | K384K | aaG | aaA | 2 | 2 | AY.100 | 0.000092 |
ORF1ab/nsp3 | 384 | K384N | aaG | aaT | 2 | 2 | AY.110 | 0.000225 |
ORF1ab/nsp3 | 384 | K384N | aaG | aaT | 2 | 2 | AY.116 | 0.000574 |
ORF1ab/nsp3 | 384 | K384N | aaG | aaT | 2 | 2 | AY.116.1 | 0.000623 |
ORF1ab/nsp3 | 384 | K384M | aAg | aTg | 2 | 2 | AY.118 | 0.000125 |
ORF1ab/nsp3 | 384 | K384E | Aag | Gag | 2 | 2 | AY.13 | 0.000322 |
ORF1ab/nsp3 | 384 | K384del | AAG | --- | 2 | 2 | AY.16 | 0.000759 |
ORF1ab/nsp3 | 384 | K384N | aaG | aaT | 2 | 2 | AY.2 | 0.000712 |
ORF1ab/nsp3 | 384 | K384K | aaG | aaA | 2 | 2 | AY.27 | 0.000129 |
ORF1ab/nsp3 | 384 | K384N | aaG | aaT | 2 | 2 | AY.37 | 0.000632 |
ORF1ab/nsp3 | 384 | K384N | aaG | aaT | 2 | 2 | AY.38 | 0.000999 |
ORF1ab/nsp3 | 384 | K384E | Aag | Gag | 2 | 2 | AY.39 | 0.000049 |
ORF1ab/nsp3 | 384 | K384T | aAg | aCg | 2 | 2 | AY.4 | 0.000003 |
ORF1ab/nsp3 | 384 | K384del | AAG | --- | 2 | 2 | AY.43 | 0.000009 |
ORF1ab/nsp3 | 384 | K384N | aaG | aaT | 2 | 2 | AY.46.1 | 0.002053 |
ORF1ab/nsp3 | 384 | K384E | Aag | Gag | 2 | 2 | AY.46.4 | 0.000329 |
ORF1ab/nsp3 | 384 | K384R | aAg | aGg | 2 | 2 | AY.63 | 0.000774 |
ORF1ab/nsp3 | 384 | K384N | aaG | aaT | 2 | 2 | AY.71 | 0.00095 |
ORF1ab/nsp3 | 384 | K384K | aaG | aaA | 2 | 2 | AY.75 | 0.000112 |
ORF1ab/nsp3 | 384 | K384del | AAG | --- | 2 | 2 | AY.75.1 | 0.000361 |
ORF1ab/nsp3 | 384 | K384N | aaG | aaT | 2 | 2 | AY.75.1 | 0.000361 |
ORF1ab/nsp3 | 384 | K384N | aaG | aaT | 2 | 2 | AY.84 | 0.000875 |
ORF1ab/nsp3 | 384 | K384K | aaG | aaA | 2 | 2 | AY.9.2 | 0.000073 |
ORF1ab/nsp3 | 384 | K384N | aaG | aaT | 1 | 2 | AY.91 | 0.00073 |
ORF1ab/nsp3 | 384 | K384N | aaG | aaC | 1 | 2 | AY.91 | 0.00073 |
ORF1ab/nsp3 | 384 | K384R | aAg | aGg | 2 | 2 | AY.98.1 | 0.000097 |
ORF1ab/nsp3 | 384 | K384del | AAG | --- | 2 | 2 | B.1.1 | 0.000036 |
ORF1ab/nsp3 | 384 | K384K | aaG | aaA | 2 | 2 | B.1.1.139 | 0.045455 |
ORF1ab/nsp3 | 384 | K384N | aaG | aaT | 2 | 2 | B.1.1.158 | 0.02439 |
ORF1ab/nsp3 | 384 | K384E | Aag | Gag | 2 | 2 | B.1.1.189 | 0.003026 |
ORF1ab/nsp3 | 384 | K384N | aaG | aaT | 2 | 2 | B.1.1.285 | 0.013072 |
ORF1ab/nsp3 | 384 | K384N | aaG | aaT | 2 | 2 | B.1.1.291 | 0.001485 |
ORF1ab/nsp3 | 384 | K384N | aaG | aaT | 2 | 2 | B.1.1.294 | 0.002532 |
ORF1ab/nsp3 | 384 | K384K | aaG | aaA | 2 | 2 | B.1.1.298 | 0.001724 |
ORF1ab/nsp3 | 384 | K384N | aaG | aaT | 2 | 2 | B.1.1.318 | 0.000604 |
ORF1ab/nsp3 | 384 | K384N | aaG | aaT | 2 | 2 | B.1.1.335 | 0.025974 |
ORF1ab/nsp3 | 384 | K384N | aaG | aaT | 2 | 2 | B.1.1.39 | 0.001019 |
ORF1ab/nsp3 | 384 | K384N | aaG | aaT | 2 | 2 | B.1.1.46 | 0.008734 |
ORF1ab/nsp3 | 384 | K384N | aaG | aaT | 2 | 2 | B.1.157 | 0.00597 |
ORF1ab/nsp3 | 384 | K384N | aaG | aaT | 2 | 2 | B.1.177.15 | 0.001262 |
ORF1ab/nsp3 | 384 | K384N | aaG | aaT | 2 | 2 | B.1.177.56 | 0.001335 |
ORF1ab/nsp3 | 384 | K384Q | Aag | Cag | 2 | 2 | B.1.2 | 0.000018 |
ORF1ab/nsp3 | 384 | K384E | Aag | Gag | 2 | 2 | B.1.258.17 | 0.000208 |
ORF1ab/nsp3 | 384 | K384K | aaG | aaA | 2 | 2 | B.1.351 | 0.000059 |
ORF1ab/nsp3 | 384 | K384K | aaG | aaA | 2 | 2 | B.1.36 | 0.000292 |
ORF1ab/nsp3 | 384 | K384N | aaG | aaT | 2 | 2 | B.1.36.17 | 0.000988 |
ORF1ab/nsp3 | 384 | K384N | aaG | aaT | 2 | 2 | B.1.36.19 | 0.018519 |
ORF1ab/nsp3 | 384 | K384N | aaG | aaT | 2 | 2 | B.1.36.22 | 0.002415 |
ORF1ab/nsp3 | 384 | K384del | AAG | --- | 2 | 2 | B.1.429 | 0.000047 |
ORF1ab/nsp3 | 384 | K384N | aaG | aaT | 2 | 2 | B.1.469 | 0.00722 |
ORF1ab/nsp3 | 384 | K384del | AAG | --- | 2 | 2 | B.1.526 | 0.000047 |
ORF1ab/nsp3 | 384 | K384N | aaG | aaT | 2 | 2 | B.1.538 | 0.016129 |
ORF1ab/nsp3 | 384 | K384N | aaG | aaT | 2 | 2 | B.1.570 | 0.005882 |
ORF1ab/nsp3 | 384 | K384N | aaG | aaT | 2 | 2 | B.1.586 | 0.021978 |
ORF1ab/nsp3 | 384 | K384del | AAG | --- | 2 | 2 | B.1.595 | 0.000522 |
ORF1ab/nsp3 | 384 | K384E | Aag | Gag | 2 | 2 | B.1.597 | 0.009259 |
ORF1ab/nsp3 | 384 | K384R | aAg | aGg | 2 | 2 | B.1.617.2 | 0.000008 |
ORF1ab/nsp3 | 384 | K384T | aAg | aCg | 2 | 2 | B.1.617.2 | 0.000008 |
ORF1ab/nsp3 | 384 | K384Q | Aag | Cag | 2 | 2 | B.1.617.2 | 0.000008 |
ORF1ab/nsp3 | 384 | K384N | aaG | aaT | 2 | 2 | B.1.620 | 0.001892 |
ORF1ab/nsp3 | 384 | K384del | AAG | --- | 2 | 2 | B.1.621 | 0.000177 |
ORF1ab/nsp3 | 384 | K384N | aaG | aaT | 2 | 2 | B.1.621 | 0.000177 |
ORF1ab/nsp3 | 384 | K384N | aaG | aaT | 2 | 2 | B.1.621.1 | 0.001012 |
ORF1ab/nsp3 | 384 | K384N | aaG | aaT | 2 | 2 | C.35 | 0.001548 |
ORF1ab/nsp3 | 384 | K384K | aaG | aaA | 2 | 2 | C.37 | 0.000232 |
ORF1ab/nsp3 | 384 | K384N | aaG | aaT | 2 | 2 | D.5 | 0.00995 |
ORF1ab/nsp3 | 384 | K384del | AAG | --- | 2 | 2 | P.1.12 | 0.000968 |
ORF1ab/nsp3 | 384 | K384K | aaG | aaA | 1 | 1 | 0.055556 | |
ORF1ab/nsp3 | 384 | K384N | aaG | aaT | 1 | 1 | A | 0.000387 |
ORF1ab/nsp3 | 384 | K384T | aAg | aCg | 1 | 1 | A.1 | 0.000282 |
ORF1ab/nsp3 | 384 | K384T | aAg | aCg | 1 | 1 | A.23.1 | 0.000704 |
ORF1ab/nsp3 | 384 | K384K | aaG | aaA | 1 | 1 | A.23.1 | 0.000704 |
ORF1ab/nsp3 | 384 | K384E | Aag | Gag | 1 | 1 | AD.2 | 0.000219 |
ORF1ab/nsp3 | 384 | K384del2 | AAG | --N | 1 | 1 | All | 0 |
ORF1ab/nsp3 | 384 | K384del1 | aaG | aa- | 1 | 1 | All | 0 |
ORF1ab/nsp3 | 384 | K384X | Aag | Tag | 1 | 1 | All | 0 |
ORF1ab/nsp3 | 384 | K384D | AaG | GaT | 1 | 1 | All | 0 |
ORF1ab/nsp3 | 384 | K384N | aaG | aaT | 1 | 1 | AY.1 | 0.000396 |
ORF1ab/nsp3 | 384 | K384N | aaG | aaT | 1 | 1 | AY.10 | 0.00053 |
ORF1ab/nsp3 | 384 | K384K | aaG | aaA | 1 | 1 | AY.101 | 0.00049 |
ORF1ab/nsp3 | 384 | K384R | aAg | aGg | 1 | 1 | AY.101 | 0.00049 |
ORF1ab/nsp3 | 384 | K384T | aAg | aCg | 1 | 1 | AY.103 | 0.000006 |
ORF1ab/nsp3 | 384 | K384N | aaG | aaT | 1 | 1 | AY.108 | 0.001103 |
ORF1ab/nsp3 | 384 | K384R | aAg | aGg | 1 | 1 | AY.110 | 0.000113 |
ORF1ab/nsp3 | 384 | K384N | aaG | aaT | 1 | 1 | AY.111 | 0.000183 |
ORF1ab/nsp3 | 384 | K384R | aAg | aGg | 1 | 1 | AY.113 | 0.000142 |
ORF1ab/nsp3 | 384 | K384Q | Aag | Cag | 1 | 1 | AY.114 | 0.000231 |
ORF1ab/nsp3 | 384 | K384N | aaG | aaT | 1 | 1 | AY.117 | 0.000085 |
ORF1ab/nsp3 | 384 | K384K | aaG | aaA | 1 | 1 | AY.119 | 0.000035 |
ORF1ab/nsp3 | 384 | K384R | aAg | aGg | 1 | 1 | AY.120 | 0.000037 |
ORF1ab/nsp3 | 384 | K384N | aaG | aaT | 1 | 1 | AY.120.2.1 | 0.000498 |
ORF1ab/nsp3 | 384 | K384Q | Aag | Cag | 1 | 1 | AY.13 | 0.000161 |
ORF1ab/nsp3 | 384 | K384del | AAG | --- | 1 | 1 | AY.13 | 0.000161 |
ORF1ab/nsp3 | 384 | K384del2 | AAG | --N | 1 | 1 | AY.16.1 | 0.00047 |
ORF1ab/nsp3 | 384 | K384del | AAG | --- | 1 | 1 | AY.19 | 0.00114 |
ORF1ab/nsp3 | 384 | K384Q | Aag | Cag | 1 | 1 | AY.20 | 0.000039 |
ORF1ab/nsp3 | 384 | K384R | aAg | aGg | 1 | 1 | AY.20 | 0.000039 |
ORF1ab/nsp3 | 384 | K384del | AAG | --- | 1 | 1 | AY.20 | 0.000039 |
ORF1ab/nsp3 | 384 | K384T | aAg | aCg | 1 | 1 | AY.23 | 0.00007 |
ORF1ab/nsp3 | 384 | K384R | aAg | aGg | 1 | 1 | AY.23 | 0.00007 |
ORF1ab/nsp3 | 384 | K384N | aaG | aaT | 1 | 1 | AY.24 | 0.000431 |
ORF1ab/nsp3 | 384 | K384del | AAG | --- | 1 | 1 | AY.26 | 0.000028 |
ORF1ab/nsp3 | 384 | K384del | AAG | --- | 1 | 1 | AY.29 | 0.000016 |
ORF1ab/nsp3 | 384 | K384R | aAg | aGg | 1 | 1 | AY.29 | 0.000016 |
ORF1ab/nsp3 | 384 | K384E | Aag | Gag | 1 | 1 | AY.29 | 0.000016 |
ORF1ab/nsp3 | 384 | K384N | aaG | aaT | 1 | 1 | AY.29.1 | 0.000221 |
ORF1ab/nsp3 | 384 | K384del | AAG | --- | 1 | 1 | AY.3 | 0.00001 |
ORF1ab/nsp3 | 384 | K384N | aaG | aaT | 1 | 1 | AY.30 | 0.000396 |
ORF1ab/nsp3 | 384 | K384Q | Aag | Cag | 1 | 1 | AY.30 | 0.000396 |
ORF1ab/nsp3 | 384 | K384del | AAG | --- | 1 | 1 | AY.33 | 0.000067 |
ORF1ab/nsp3 | 384 | K384del | AAG | --- | 1 | 1 | AY.39 | 0.000025 |
ORF1ab/nsp3 | 384 | K384R | aAg | aGg | 1 | 1 | AY.39 | 0.000025 |
ORF1ab/nsp3 | 384 | K384Q | Aag | Cag | 1 | 1 | AY.4 | 0.000002 |
ORF1ab/nsp3 | 384 | K384R | aAg | aGg | 1 | 1 | AY.4.2 | 0.000022 |
ORF1ab/nsp3 | 384 | K384N | aaG | aaT | 1 | 1 | AY.4.3 | 0.000842 |
ORF1ab/nsp3 | 384 | K384del | AAG | --- | 1 | 1 | AY.4.5 | 0.000107 |
ORF1ab/nsp3 | 384 | K384N | aaG | aaT | 1 | 1 | AY.40 | 0.000964 |
ORF1ab/nsp3 | 384 | K384N | aaG | aaT | 1 | 1 | AY.41 | 0.000294 |
ORF1ab/nsp3 | 384 | K384R | aAg | aGg | 1 | 1 | AY.42 | 0.00004 |
ORF1ab/nsp3 | 384 | K384M | aAg | aTg | 1 | 1 | AY.42 | 0.00004 |
ORF1ab/nsp3 | 384 | K384M | aAg | aTg | 1 | 1 | AY.43 | 0.000004 |
ORF1ab/nsp3 | 384 | K384T | aAg | aCg | 1 | 1 | AY.44 | 0.000006 |
ORF1ab/nsp3 | 384 | K384K | aaG | aaA | 1 | 1 | AY.46.4 | 0.000165 |
ORF1ab/nsp3 | 384 | K384N | aaG | aaT | 1 | 1 | AY.46.5 | 0.000198 |
ORF1ab/nsp3 | 384 | K384del | AAG | --- | 1 | 1 | AY.47 | 0.000031 |
ORF1ab/nsp3 | 384 | K384K | aaG | aaA | 1 | 1 | AY.5 | 0.000021 |
ORF1ab/nsp3 | 384 | K384T | aAg | aCg | 1 | 1 | AY.5 | 0.000021 |
ORF1ab/nsp3 | 384 | K384del | AAG | --- | 1 | 1 | AY.5.3 | 0.000337 |
ORF1ab/nsp3 | 384 | K384N | aaG | aaT | 1 | 1 | AY.52 | 0.000814 |
ORF1ab/nsp3 | 384 | K384N | aaG | aaT | 1 | 1 | AY.53 | 0.000288 |
ORF1ab/nsp3 | 384 | K384N | aaG | aaC | 1 | 1 | AY.54 | 0.000095 |
ORF1ab/nsp3 | 384 | K384N | aaG | aaT | 1 | 1 | AY.55 | 0.000917 |
ORF1ab/nsp3 | 384 | K384K | aaG | aaA | 1 | 1 | AY.57 | 0.000656 |
ORF1ab/nsp3 | 384 | K384del | AAG | --- | 1 | 1 | AY.6 | 0.000041 |
ORF1ab/nsp3 | 384 | K384T | aAg | aCg | 1 | 1 | AY.6 | 0.000041 |
ORF1ab/nsp3 | 384 | K384K | aaG | aaA | 1 | 1 | AY.61 | 0.000105 |
ORF1ab/nsp3 | 384 | K384E | Aag | Gag | 1 | 1 | AY.65 | 0.000533 |
ORF1ab/nsp3 | 384 | K384N | aaG | aaT | 1 | 1 | AY.65 | 0.000533 |
ORF1ab/nsp3 | 384 | K384E | Aag | Gag | 1 | 1 | AY.7 | 0.000196 |
ORF1ab/nsp3 | 384 | K384N | aaG | aaT | 1 | 1 | AY.7.2 | 0.000559 |
ORF1ab/nsp3 | 384 | K384N | aaG | aaT | 1 | 1 | AY.72 | 0.001361 |
ORF1ab/nsp3 | 384 | K384R | aAg | aGg | 1 | 1 | AY.74 | 0.000116 |
ORF1ab/nsp3 | 384 | K384E | Aag | Gag | 1 | 1 | AY.75 | 0.000056 |
ORF1ab/nsp3 | 384 | K384N | aaG | aaT | 1 | 1 | AY.78 | 0.001541 |
ORF1ab/nsp3 | 384 | K384N | aaG | aaC | 1 | 1 | AY.8 | 0.000606 |
ORF1ab/nsp3 | 384 | K384N | aaG | aaT | 1 | 1 | AY.82 | 0.001357 |
ORF1ab/nsp3 | 384 | K384N | aaG | aaT | 1 | 1 | AY.85 | 0.000427 |
ORF1ab/nsp3 | 384 | K384N | aaG | aaT | 1 | 1 | AY.94 | 0.000443 |
ORF1ab/nsp3 | 384 | K384del | AAG | --- | 1 | 1 | AY.94 | 0.000443 |
ORF1ab/nsp3 | 384 | K384R | aAg | aGg | 1 | 1 | AY.96 | 0.002075 |
ORF1ab/nsp3 | 384 | K384T | aAg | aCg | 1 | 1 | AY.98 | 0.000079 |
ORF1ab/nsp3 | 384 | K384E | Aag | Gag | 1 | 1 | AY.98.1 | 0.000048 |
ORF1ab/nsp3 | 384 | K384R | aAg | aGg | 1 | 1 | AY.99.1 | 0.001553 |
ORF1ab/nsp3 | 384 | K384R | aAg | aGg | 1 | 1 | B | 0.000128 |
ORF1ab/nsp3 | 384 | K384K | aaG | aaA | 1 | 1 | B.1 | 0.000009 |
ORF1ab/nsp3 | 384 | K384Q | Aag | Cag | 1 | 1 | B.1.1 | 0.000018 |
ORF1ab/nsp3 | 384 | K384E | Aag | Gag | 1 | 1 | B.1.1 | 0.000018 |
ORF1ab/nsp3 | 384 | K384T | aAg | aCg | 1 | 1 | B.1.1 | 0.000018 |
ORF1ab/nsp3 | 384 | K384R | aAg | aGg | 1 | 1 | B.1.1 | 0.000018 |
ORF1ab/nsp3 | 384 | K384K | aaG | aaA | 1 | 1 | B.1.1.113 | 0.006993 |
ORF1ab/nsp3 | 384 | K384N | aaG | aaT | 1 | 1 | B.1.1.121 | 0.002427 |
ORF1ab/nsp3 | 384 | K384N | aaG | aaT | 1 | 1 | B.1.1.138 | 0.006061 |
ORF1ab/nsp3 | 384 | K384N | aaG | aaT | 1 | 1 | B.1.1.141 | 0.002012 |
ORF1ab/nsp3 | 384 | K384N | aaG | aaT | 1 | 1 | B.1.1.16 | 0.055556 |
ORF1ab/nsp3 | 384 | K384N | aaG | aaT | 1 | 1 | B.1.1.177 | 0.019231 |
ORF1ab/nsp3 | 384 | K384del | AAG | --- | 1 | 1 | B.1.1.192 | 0.002309 |
ORF1ab/nsp3 | 384 | K384N | aaG | aaT | 1 | 1 | B.1.1.196 | 0.005714 |
ORF1ab/nsp3 | 384 | K384N | aaG | aaT | 1 | 1 | B.1.1.198 | 0.001468 |
ORF1ab/nsp3 | 384 | K384N | aaG | aaT | 1 | 1 | B.1.1.200 | 0.007463 |
ORF1ab/nsp3 | 384 | K384K | aaG | aaA | 1 | 1 | B.1.1.207 | 0.001182 |
ORF1ab/nsp3 | 384 | K384N | aaG | aaT | 1 | 1 | B.1.1.220 | 0.001859 |
ORF1ab/nsp3 | 384 | K384del | AAG | --- | 1 | 1 | B.1.1.221 | 0.010101 |
ORF1ab/nsp3 | 384 | K384E | Aag | Gag | 1 | 1 | B.1.1.25 | 0.000569 |
ORF1ab/nsp3 | 384 | K384E | Aag | Gag | 1 | 1 | B.1.1.26 | 0.005236 |
ORF1ab/nsp3 | 384 | K384N | aaG | aaT | 1 | 1 | B.1.1.262 | 0.015152 |
ORF1ab/nsp3 | 384 | K384N | aaG | aaT | 1 | 1 | B.1.1.263 | 0.001558 |
ORF1ab/nsp3 | 384 | K384R | aAg | aGg | 1 | 1 | B.1.1.263 | 0.001558 |
ORF1ab/nsp3 | 384 | K384K | aaG | aaA | 1 | 1 | B.1.1.28 | 0.000311 |
ORF1ab/nsp3 | 384 | K384T | aAg | aCg | 1 | 1 | B.1.1.284 | 0.000107 |
ORF1ab/nsp3 | 384 | K384N | aaG | aaT | 1 | 1 | B.1.1.304 | 0.002809 |
ORF1ab/nsp3 | 384 | K384K | aaG | aaA | 1 | 1 | B.1.1.306 | 0.000438 |
ORF1ab/nsp3 | 384 | K384N | aaG | aaT | 1 | 1 | B.1.1.311 | 0.000358 |
ORF1ab/nsp3 | 384 | K384del | AAG | --- | 1 | 1 | B.1.1.315 | 0.008475 |
ORF1ab/nsp3 | 384 | K384R | aAg | aGg | 1 | 1 | B.1.1.318 | 0.000302 |
ORF1ab/nsp3 | 384 | K384N | aaG | aaT | 1 | 1 | B.1.1.326 | 0.001761 |
ORF1ab/nsp3 | 384 | K384N | aaG | aaT | 1 | 1 | B.1.1.328 | 0.016949 |
ORF1ab/nsp3 | 384 | K384del | AAG | --- | 1 | 1 | B.1.1.33 | 0.000421 |
ORF1ab/nsp3 | 384 | K384N | aaG | aaT | 1 | 1 | B.1.1.33 | 0.000421 |
ORF1ab/nsp3 | 384 | K384N | aaG | aaT | 1 | 1 | B.1.1.340 | 0.045455 |
ORF1ab/nsp3 | 384 | K384N | aaG | aaT | 1 | 1 | B.1.1.348 | 0.000796 |
ORF1ab/nsp3 | 384 | K384E | Aag | Gag | 1 | 1 | B.1.1.37 | 0.000193 |
ORF1ab/nsp3 | 384 | K384N | aaG | aaT | 1 | 1 | B.1.1.389 | 0.006061 |
ORF1ab/nsp3 | 384 | K384E | Aag | Gag | 1 | 1 | B.1.1.39 | 0.00051 |
ORF1ab/nsp3 | 384 | K384N | aaG | aaT | 1 | 1 | B.1.1.403 | 0.025641 |
ORF1ab/nsp3 | 384 | K384M | aAg | aTg | 1 | 1 | B.1.1.406 | 0.006494 |
ORF1ab/nsp3 | 384 | K384N | aaG | aaT | 1 | 1 | B.1.1.409 | 0.002833 |
ORF1ab/nsp3 | 384 | K384N | aaG | aaT | 1 | 1 | B.1.1.411 | 0.014706 |
ORF1ab/nsp3 | 384 | K384N | aaG | aaT | 1 | 1 | B.1.1.420 | 0.001006 |
ORF1ab/nsp3 | 384 | K384R | aAg | aGg | 1 | 1 | B.1.1.420 | 0.001006 |
ORF1ab/nsp3 | 384 | K384E | Aag | Gag | 1 | 1 | B.1.1.421 | 0.030303 |
ORF1ab/nsp3 | 384 | K384N | aaG | aaT | 1 | 1 | B.1.1.5 | 0.008333 |
ORF1ab/nsp3 | 384 | K384E | Aag | Gag | 1 | 1 | B.1.1.519 | 0.00004 |
ORF1ab/nsp3 | 384 | K384R | aAg | aGg | 1 | 1 | B.1.1.519 | 0.00004 |
ORF1ab/nsp3 | 384 | K384N | aaG | aaT | 1 | 1 | B.1.1.57 | 0.011494 |
ORF1ab/nsp3 | 384 | K384X | Aag | Tag | 1 | 1 | B.1.1.7 | 0.000001 |
ORF1ab/nsp3 | 384 | K384N | aaG | aaT | 1 | 1 | B.1.1.70 | 0.000341 |
ORF1ab/nsp3 | 384 | K384N | aaG | aaT | 1 | 1 | B.1.110.3 | 0.000718 |
ORF1ab/nsp3 | 384 | K384del | AAG | --- | 1 | 1 | B.1.140 | 0.018868 |
ORF1ab/nsp3 | 384 | K384N | aaG | aaT | 1 | 1 | B.1.143 | 0.021277 |
ORF1ab/nsp3 | 384 | K384N | aaG | aaT | 1 | 1 | B.1.153 | 0.018868 |
ORF1ab/nsp3 | 384 | K384E | Aag | Gag | 1 | 1 | B.1.160 | 0.000031 |
ORF1ab/nsp3 | 384 | K384N | aaG | aaT | 1 | 1 | B.1.160.14 | 0.002119 |
ORF1ab/nsp3 | 384 | K384N | aaG | aaT | 1 | 1 | B.1.160.28 | 0.002924 |
ORF1ab/nsp3 | 384 | K384N | aaG | aaT | 1 | 1 | B.1.170 | 0.00431 |
ORF1ab/nsp3 | 384 | K384E | Aag | Gag | 1 | 1 | B.1.177 | 0.000013 |
ORF1ab/nsp3 | 384 | K384K | aaG | aaA | 1 | 1 | B.1.177 | 0.000013 |
ORF1ab/nsp3 | 384 | K384N | aaG | aaT | 1 | 1 | B.1.177.10 | 0.000878 |
ORF1ab/nsp3 | 384 | K384E | Aag | Gag | 1 | 1 | B.1.177.21 | 0.000076 |
ORF1ab/nsp3 | 384 | K384N | aaG | aaT | 1 | 1 | B.1.177.27 | 0.009434 |
ORF1ab/nsp3 | 384 | K384del | AAG | --- | 1 | 1 | B.1.177.4 | 0.000211 |
ORF1ab/nsp3 | 384 | K384E | Aag | Gag | 1 | 1 | B.1.177.44 | 0.000519 |
ORF1ab/nsp3 | 384 | K384N | aaG | aaT | 1 | 1 | B.1.177.54 | 0.000606 |
ORF1ab/nsp3 | 384 | K384E | Aag | Gag | 1 | 1 | B.1.177.60 | 0.000218 |
ORF1ab/nsp3 | 384 | K384N | aaG | aaT | 1 | 1 | B.1.177.73 | 0.000566 |
ORF1ab/nsp3 | 384 | K384K | aaG | aaA | 1 | 1 | B.1.177.77 | 0.000726 |
ORF1ab/nsp3 | 384 | K384N | aaG | aaT | 1 | 1 | B.1.177.77 | 0.000726 |
ORF1ab/nsp3 | 384 | K384N | aaG | aaT | 1 | 1 | B.1.189 | 0.004292 |
ORF1ab/nsp3 | 384 | K384R | aAg | aGg | 1 | 1 | B.1.2 | 0.000009 |
ORF1ab/nsp3 | 384 | K384del1 | aaG | aa- | 1 | 1 | B.1.2 | 0.000009 |
ORF1ab/nsp3 | 384 | K384M | aAg | aTg | 1 | 1 | B.1.2 | 0.000009 |
ORF1ab/nsp3 | 384 | K384N | aaG | aaT | 1 | 1 | B.1.214.2 | 0.0006 |
ORF1ab/nsp3 | 384 | K384N | aaG | aaC | 1 | 1 | B.1.218 | 0.005155 |
ORF1ab/nsp3 | 384 | K384del | AAG | --- | 1 | 1 | B.1.221 | 0.000071 |
ORF1ab/nsp3 | 384 | K384del | AAG | --- | 1 | 1 | B.1.223 | 0.002778 |
ORF1ab/nsp3 | 384 | K384K | aaG | aaA | 1 | 1 | B.1.243 | 0.00007 |
ORF1ab/nsp3 | 384 | K384R | aAg | aGg | 1 | 1 | B.1.258 | 0.000067 |
ORF1ab/nsp3 | 384 | K384N | aaG | aaT | 1 | 1 | B.1.258.11 | 0.000396 |
ORF1ab/nsp3 | 384 | K384R | aAg | aGg | 1 | 1 | B.1.258.17 | 0.000104 |
ORF1ab/nsp3 | 384 | K384del | AAG | --- | 1 | 1 | B.1.258.17 | 0.000104 |
ORF1ab/nsp3 | 384 | K384K | aaG | aaA | 1 | 1 | B.1.258.17 | 0.000104 |
ORF1ab/nsp3 | 384 | K384N | aaG | aaC | 1 | 1 | B.1.260 | 0.003344 |
ORF1ab/nsp3 | 384 | K384N | aaG | aaT | 1 | 1 | B.1.301 | 0.005917 |
ORF1ab/nsp3 | 384 | K384E | Aag | Gag | 1 | 1 | B.1.311 | 0.000275 |
ORF1ab/nsp3 | 384 | K384N | aaG | aaT | 1 | 1 | B.1.332 | 0.003497 |
ORF1ab/nsp3 | 384 | K384N | aaG | aaT | 1 | 1 | B.1.338 | 0.008621 |
ORF1ab/nsp3 | 384 | K384R | aAg | aGg | 1 | 1 | B.1.351 | 0.00003 |
ORF1ab/nsp3 | 384 | K384del | AAG | --- | 1 | 1 | B.1.351 | 0.00003 |
ORF1ab/nsp3 | 384 | K384del | AAG | --- | 1 | 1 | B.1.351.2 | 0.000303 |
ORF1ab/nsp3 | 384 | K384R | aAg | aGg | 1 | 1 | B.1.356 | 0.001727 |
ORF1ab/nsp3 | 384 | K384E | Aag | Gag | 1 | 1 | B.1.36 | 0.000146 |
ORF1ab/nsp3 | 384 | K384R | aAg | aGg | 1 | 1 | B.1.36 | 0.000146 |
ORF1ab/nsp3 | 384 | K384del | AAG | --- | 1 | 1 | B.1.36.29 | 0.000517 |
ORF1ab/nsp3 | 384 | K384N | aaG | aaT | 1 | 1 | B.1.36.35 | 0.002604 |
ORF1ab/nsp3 | 384 | K384M | aAg | aTg | 1 | 1 | B.1.36.8 | 0.001 |
ORF1ab/nsp3 | 384 | K384N | aaG | aaT | 1 | 1 | B.1.361 | 0.001289 |
ORF1ab/nsp3 | 384 | K384N | aaG | aaT | 1 | 1 | B.1.375 | 0.00082 |
ORF1ab/nsp3 | 384 | K384N | aaG | aaT | 1 | 1 | B.1.380 | 0.006623 |
ORF1ab/nsp3 | 384 | K384N | aaG | aaT | 1 | 1 | B.1.416 | 0.001269 |
ORF1ab/nsp3 | 384 | K384R | aAg | aGg | 1 | 1 | B.1.429 | 0.000024 |
ORF1ab/nsp3 | 384 | K384E | Aag | Gag | 1 | 1 | B.1.436 | 0.001029 |
ORF1ab/nsp3 | 384 | K384N | aaG | aaT | 1 | 1 | B.1.436 | 0.001029 |
ORF1ab/nsp3 | 384 | K384N | aaG | aaT | 1 | 1 | B.1.466.1 | 0.007194 |
ORF1ab/nsp3 | 384 | K384K | aaG | aaA | 1 | 1 | B.1.500 | 0.052632 |
ORF1ab/nsp3 | 384 | K384E | Aag | Gag | 1 | 1 | B.1.525 | 0.000113 |
ORF1ab/nsp3 | 384 | K384N | aaG | aaT | 1 | 1 | B.1.560 | 0.00463 |
ORF1ab/nsp3 | 384 | K384N | aaG | aaT | 1 | 1 | B.1.575 | 0.000303 |
ORF1ab/nsp3 | 384 | K384N | aaG | aaT | 1 | 1 | B.1.575.1 | 0.002439 |
ORF1ab/nsp3 | 384 | K384N | aaG | aaT | 1 | 1 | B.1.582 | 0.000491 |
ORF1ab/nsp3 | 384 | K384N | aaG | aaT | 1 | 1 | B.1.588 | 0.00091 |
ORF1ab/nsp3 | 384 | K384N | aaG | aaT | 1 | 1 | B.1.590 | 0.004545 |
ORF1ab/nsp3 | 384 | K384M | aAg | aTg | 1 | 1 | B.1.596 | 0.000087 |
ORF1ab/nsp3 | 384 | K384E | Aag | Gag | 1 | 1 | B.1.596 | 0.000087 |
ORF1ab/nsp3 | 384 | K384N | aaG | aaT | 1 | 1 | B.1.597 | 0.00463 |
ORF1ab/nsp3 | 384 | K384M | aAg | aTg | 1 | 1 | B.1.617.2 | 0.000004 |
ORF1ab/nsp3 | 384 | K384R | aAG | aGA | 1 | 1 | B.1.617.3 | 0.002985 |
ORF1ab/nsp3 | 384 | K384R | aAg | aGg | 1 | 1 | B.1.619.1 | 0.000641 |
ORF1ab/nsp3 | 384 | K384D | AaG | GaT | 1 | 1 | B.1.621 | 0.000089 |
ORF1ab/nsp3 | 384 | K384N | aaG | aaT | 1 | 1 | B.1.623 | 0.000536 |
ORF1ab/nsp3 | 384 | K384N | aaG | aaT | 1 | 1 | B.1.625 | 0.002353 |
ORF1ab/nsp3 | 384 | K384E | Aag | Gag | 1 | 1 | B.1.633 | 0.041667 |
ORF1ab/nsp3 | 384 | K384R | aAg | aGg | 1 | 1 | B.35 | 0.007812 |
ORF1ab/nsp3 | 384 | K384N | aaG | aaT | 1 | 1 | B.38 | 0.02381 |
ORF1ab/nsp3 | 384 | K384N | aaG | aaT | 1 | 1 | B.4 | 0.002208 |
ORF1ab/nsp3 | 384 | K384N | aaG | aaT | 1 | 1 | B.40 | 0.000364 |
ORF1ab/nsp3 | 384 | K384R | aAg | aGg | 1 | 1 | B.40 | 0.000364 |
ORF1ab/nsp3 | 384 | K384N | aaG | aaT | 1 | 1 | B.55 | 0.00295 |
ORF1ab/nsp3 | 384 | K384del | AAG | --- | 1 | 1 | B.57 | 0.015152 |
ORF1ab/nsp3 | 384 | K384R | aAg | aGg | 1 | 1 | C.33 | 0.058824 |
ORF1ab/nsp3 | 384 | K384N | aaG | aaT | 1 | 1 | C.36 | 0.000911 |
ORF1ab/nsp3 | 384 | K384del | AAG | --- | 1 | 1 | C.37 | 0.000116 |
ORF1ab/nsp3 | 384 | K384N | aaG | aaT | 1 | 1 | D.3 | 0.005917 |
ORF1ab/nsp3 | 384 | K384del | AAG | --- | 1 | 1 | N.6 | 0.007092 |
ORF1ab/nsp3 | 384 | K384del | AAG | --- | 1 | 1 | P.1 | 0.000016 |
ORF1ab/nsp3 | 384 | K384K | aaG | aaA | 1 | 1 | P.1 | 0.000016 |
ORF1ab/nsp3 | 384 | K384N | aaG | aaT | 1 | 1 | P.1.1 | 0.000318 |
ORF1ab/nsp3 | 384 | K384K | aaG | aaA | 1 | 1 | P.1.14 | 0.000048 |
ORF1ab/nsp3 | 384 | K384N | aaG | aaT | 1 | 1 | P.1.15 | 0.000232 |
ORF1ab/nsp3 | 384 | K384N | aaG | aaT | 1 | 1 | P.1.17 | 0.000162 |
ORF1ab/nsp3 | 384 | K384N | aaG | aaT | 1 | 1 | P.3 | 0.001595 |
ORF1ab/nsp3 | 384 | K384del | AAG | --- | 1 | 1 | Q.2 | 0.000613 |
ORF1ab/nsp3 | 384 | K384N | aaG | aaT | 1 | 1 | Q.4 | 0.000455 |
ORF1ab/nsp3 | 384 | K384K | aaG | aaA | 1 | 1 | Q.7 | 0.001111 |
ORF1ab/nsp3 | 384 | K384Q | Aag | Cag | 1 | 1 | Q.8 | 0.000165 |
ORF1ab/nsp3 | 384 | K384R | aAg | aGg | 1 | 1 | R.1 | 0.00009 |
ORF1ab/nsp3 | 384 | K384del | AAG | --- | 1 | 1 | R.1 | 0.00009 |
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CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk
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