CoV-GLUE | Mutations | Mutation
Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):
ORF | CodonNum | Mut | ORF1abMut | MutType | RefCodon | MutCodon | AACount | CodonCount | CodonProp | Genome Position |
ORF1ab/nsp3 | 383 | Q383K | Q1201K | nonsyn | Caa | Aaa | 249 | 249 | 1 | 3866-3868 |
ORF1ab/nsp3 | 383 | Q383H | Q1201H | nonsyn | caA | caT | 174 | 155 | 0.890805 | 3866-3868 |
ORF1ab/nsp3 | 383 | Q383H | Q1201H | nonsyn | caA | caC | 174 | 19 | 0.109195 | 3866-3868 |
ORF1ab/nsp3 | 383 | Q383del | Q1201del | del | CAA | --- | 136 | 136 | 1 | 3866-3868 |
ORF1ab/nsp3 | 383 | Q383Q | Q1201Q | syn | caA | caG | 127 | 127 | 1 | 3866-3868 |
ORF1ab/nsp3 | 383 | Q383L | Q1201L | nonsyn | cAa | cTa | 83 | 82 | 0.987952 | 3866-3868 |
ORF1ab/nsp3 | 383 | Q383L | Q1201L | nonsyn | cAA | cTT | 83 | 1 | 0.0120482 | 3866-3868 |
ORF1ab/nsp3 | 383 | Q383R | Q1201R | nonsyn | cAa | cGa | 71 | 71 | 1 | 3866-3868 |
ORF1ab/nsp3 | 383 | Q383X | Q1201X | nonsyn | Caa | Taa | 30 | 29 | 0.966667 | 3866-3868 |
ORF1ab/nsp3 | 383 | Q383X | Q1201X | nonsyn | CaA | TaG | 30 | 1 | 0.0333333 | 3866-3868 |
ORF1ab/nsp3 | 383 | Q383del1 | Q1201del1 | del | cAa | c-a | 24 | 20 | 0.833333 | 3866-3868 |
ORF1ab/nsp3 | 383 | Q383del1 | Q1201del1 | del | Caa | -aa | 24 | 2 | 0.0833333 | 3866-3868 |
ORF1ab/nsp3 | 383 | Q383del1 | Q1201del1 | del | CAa | T-a | 24 | 1 | 0.0416667 | 3866-3868 |
ORF1ab/nsp3 | 383 | Q383del1 | Q1201del1 | del | caA | ca- | 24 | 1 | 0.0416667 | 3866-3868 |
ORF1ab/nsp3 | 383 | Q383P | Q1201P | nonsyn | cAa | cCa | 22 | 22 | 1 | 3866-3868 |
ORF1ab/nsp3 | 383 | Q383E | Q1201E | nonsyn | Caa | Gaa | 10 | 10 | 1 | 3866-3868 |
ORF1ab/nsp3 | 383 | Q383del2 | Q1201del2 | del | cAA | c-- | 5 | 3 | 0.6 | 3866-3868 |
ORF1ab/nsp3 | 383 | Q383del2 | Q1201del2 | del | CAA | T-- | 5 | 1 | 0.2 | 3866-3868 |
ORF1ab/nsp3 | 383 | Q383del2 | Q1201del2 | del | CAa | --a | 5 | 1 | 0.2 | 3866-3868 |
ORF1ab/nsp3 | 383 | Q383T | Q1201T | nonsyn | CAa | ACa | 1 | 1 | 1 | 3866-3868 |
ORF1ab/nsp3 | 383 | Q383S | Q1201S | nonsyn | CAa | TCa | 1 | 1 | 1 | 3866-3868 |
Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):
ORF | CodonNum | Mut | RefCodon | MutCodon | CodonCount | AACount | Lineage | LineageCodonProp |
ORF1ab/nsp3 | 383 | Q383K | Caa | Aaa | 249 | 249 | All | 0.000048 |
ORF1ab/nsp3 | 383 | Q383K | Caa | Aaa | 179 | 179 | AY.4 | 0.000279 |
ORF1ab/nsp3 | 383 | Q383H | caA | caT | 155 | 174 | All | 0.00003 |
ORF1ab/nsp3 | 383 | Q383H | caA | caC | 19 | 174 | All | 0.000004 |
ORF1ab/nsp3 | 383 | Q383H | caA | caT | 139 | 139 | B.1.1.528 | 0.668269 |
ORF1ab/nsp3 | 383 | Q383del | CAA | --- | 136 | 136 | All | 0.000026 |
ORF1ab/nsp3 | 383 | Q383Q | caA | caG | 127 | 127 | All | 0.000024 |
ORF1ab/nsp3 | 383 | Q383L | cAa | cTa | 82 | 83 | All | 0.000016 |
ORF1ab/nsp3 | 383 | Q383L | cAA | cTT | 1 | 83 | All | 0 |
ORF1ab/nsp3 | 383 | Q383R | cAa | cGa | 71 | 71 | All | 0.000014 |
ORF1ab/nsp3 | 383 | Q383L | cAa | cTa | 51 | 51 | B.1.397 | 0.247573 |
ORF1ab/nsp3 | 383 | Q383Q | caA | caG | 43 | 43 | AY.44 | 0.000262 |
ORF1ab/nsp3 | 383 | Q383X | Caa | Taa | 29 | 30 | All | 0.000006 |
ORF1ab/nsp3 | 383 | Q383X | CaA | TaG | 1 | 30 | All | 0 |
ORF1ab/nsp3 | 383 | Q383del1 | cAa | c-a | 20 | 24 | All | 0.000004 |
ORF1ab/nsp3 | 383 | Q383del1 | Caa | -aa | 2 | 24 | All | 0 |
ORF1ab/nsp3 | 383 | Q383del1 | caA | ca- | 1 | 24 | All | 0 |
ORF1ab/nsp3 | 383 | Q383del1 | CAa | T-a | 1 | 24 | All | 0 |
ORF1ab/nsp3 | 383 | Q383K | Caa | Aaa | 24 | 24 | B.1.177 | 0.000316 |
ORF1ab/nsp3 | 383 | Q383del | CAA | --- | 23 | 23 | B.1.1.7 | 0.000021 |
ORF1ab/nsp3 | 383 | Q383del | CAA | --- | 23 | 23 | B.1.2 | 0.000203 |
ORF1ab/nsp3 | 383 | Q383P | cAa | cCa | 22 | 22 | All | 0.000004 |
ORF1ab/nsp3 | 383 | Q383Q | caA | caG | 20 | 20 | B.1.617.2 | 0.000075 |
ORF1ab/nsp3 | 383 | Q383Q | caA | caG | 15 | 15 | B.1.1.7 | 0.000013 |
ORF1ab/nsp3 | 383 | Q383L | cAa | cTa | 13 | 13 | AT.1 | 0.066667 |
ORF1ab/nsp3 | 383 | Q383del | CAA | --- | 13 | 13 | AY.4 | 0.00002 |
ORF1ab/nsp3 | 383 | Q383R | cAa | cGa | 13 | 13 | AY.43 | 0.000058 |
ORF1ab/nsp3 | 383 | Q383P | cAa | cCa | 13 | 13 | P.1.14 | 0.000621 |
ORF1ab/nsp3 | 383 | Q383Q | caA | caG | 11 | 11 | AY.6 | 0.000452 |
ORF1ab/nsp3 | 383 | Q383R | cAa | cGa | 11 | 11 | B.1.1.7 | 0.00001 |
ORF1ab/nsp3 | 383 | Q383E | Caa | Gaa | 10 | 10 | All | 0.000002 |
ORF1ab/nsp3 | 383 | Q383R | cAa | cGa | 9 | 9 | AY.3 | 0.00009 |
ORF1ab/nsp3 | 383 | Q383Q | caA | caG | 9 | 9 | AY.43 | 0.00004 |
ORF1ab/nsp3 | 383 | Q383E | Caa | Gaa | 8 | 8 | B.1.1.519 | 0.000318 |
ORF1ab/nsp3 | 383 | Q383R | cAa | cGa | 7 | 7 | AY.3.1 | 0.000597 |
ORF1ab/nsp3 | 383 | Q383del | CAA | --- | 7 | 7 | AY.44 | 0.000043 |
ORF1ab/nsp3 | 383 | Q383R | cAa | cGa | 7 | 7 | AY.5 | 0.000145 |
ORF1ab/nsp3 | 383 | Q383R | cAa | cGa | 7 | 7 | B.1.617.2 | 0.000026 |
ORF1ab/nsp3 | 383 | Q383del | CAA | --- | 6 | 6 | B.1 | 0.000055 |
ORF1ab/nsp3 | 383 | Q383X | Caa | Taa | 6 | 6 | B.1.1.7 | 0.000005 |
ORF1ab/nsp3 | 383 | Q383L | cAa | cTa | 6 | 6 | B.1.1.7 | 0.000005 |
ORF1ab/nsp3 | 383 | Q383del2 | cAA | c-- | 3 | 5 | All | 0.000001 |
ORF1ab/nsp3 | 383 | Q383del2 | CAA | T-- | 1 | 5 | All | 0 |
ORF1ab/nsp3 | 383 | Q383del2 | CAa | --a | 1 | 5 | All | 0 |
ORF1ab/nsp3 | 383 | Q383del | CAA | --- | 5 | 5 | AY.25 | 0.00003 |
ORF1ab/nsp3 | 383 | Q383Q | caA | caG | 5 | 5 | AY.98 | 0.000395 |
ORF1ab/nsp3 | 383 | Q383H | caA | caT | 5 | 5 | B.1.1.34 | 0.065789 |
ORF1ab/nsp3 | 383 | Q383K | Caa | Aaa | 5 | 5 | B.1.1.7 | 0.000004 |
ORF1ab/nsp3 | 383 | Q383del | CAA | --- | 5 | 5 | B.1.596 | 0.000436 |
ORF1ab/nsp3 | 383 | Q383L | cAa | cTa | 5 | 5 | Q.1 | 0.000632 |
ORF1ab/nsp3 | 383 | Q383X | Caa | Taa | 4 | 4 | B.1 | 0.000037 |
ORF1ab/nsp3 | 383 | Q383Q | caA | caG | 4 | 4 | B.1.1.317 | 0.001647 |
ORF1ab/nsp3 | 383 | Q383H | caA | caC | 3 | 4 | B.1.1.7 | 0.000003 |
ORF1ab/nsp3 | 383 | Q383H | caA | caT | 1 | 4 | B.1.1.7 | 0.000001 |
ORF1ab/nsp3 | 383 | Q383del | CAA | --- | 4 | 4 | B.1.177 | 0.000053 |
ORF1ab/nsp3 | 383 | Q383del1 | cAa | c-a | 4 | 4 | B.1.2 | 0.000035 |
ORF1ab/nsp3 | 383 | Q383X | Caa | Taa | 4 | 4 | B.1.2 | 0.000035 |
ORF1ab/nsp3 | 383 | Q383P | cAa | cCa | 4 | 4 | B.1.617.2 | 0.000015 |
ORF1ab/nsp3 | 383 | Q383K | Caa | Aaa | 3 | 3 | 0.166667 | |
ORF1ab/nsp3 | 383 | Q383H | caA | caC | 3 | 3 | AY.103 | 0.000019 |
ORF1ab/nsp3 | 383 | Q383K | Caa | Aaa | 3 | 3 | AY.103 | 0.000019 |
ORF1ab/nsp3 | 383 | Q383Q | caA | caG | 3 | 3 | AY.74 | 0.000347 |
ORF1ab/nsp3 | 383 | Q383del2 | cAA | c-- | 3 | 3 | B.1.1.7 | 0.000003 |
ORF1ab/nsp3 | 383 | Q383del | CAA | --- | 3 | 3 | B.1.525 | 0.000339 |
ORF1ab/nsp3 | 383 | Q383H | caA | caC | 2 | 2 | AY.102 | 0.000053 |
ORF1ab/nsp3 | 383 | Q383R | cAa | cGa | 2 | 2 | AY.120.2.1 | 0.000997 |
ORF1ab/nsp3 | 383 | Q383R | cAa | cGa | 2 | 2 | AY.14 | 0.000176 |
ORF1ab/nsp3 | 383 | Q383K | Caa | Aaa | 2 | 2 | AY.25 | 0.000012 |
ORF1ab/nsp3 | 383 | Q383K | Caa | Aaa | 2 | 2 | AY.26 | 0.000057 |
ORF1ab/nsp3 | 383 | Q383K | Caa | Aaa | 2 | 2 | AY.3 | 0.00002 |
ORF1ab/nsp3 | 383 | Q383X | Caa | Taa | 2 | 2 | AY.4 | 0.000003 |
ORF1ab/nsp3 | 383 | Q383R | cAa | cGa | 2 | 2 | AY.4 | 0.000003 |
ORF1ab/nsp3 | 383 | Q383K | Caa | Aaa | 2 | 2 | AY.43 | 0.000009 |
ORF1ab/nsp3 | 383 | Q383del | CAA | --- | 2 | 2 | AY.43 | 0.000009 |
ORF1ab/nsp3 | 383 | Q383del1 | cAa | c-a | 2 | 2 | AY.44 | 0.000012 |
ORF1ab/nsp3 | 383 | Q383del | CAA | --- | 2 | 2 | AY.75.1 | 0.000361 |
ORF1ab/nsp3 | 383 | Q383L | cAA | cTT | 1 | 2 | AY.98.1 | 0.000048 |
ORF1ab/nsp3 | 383 | Q383L | cAa | cTa | 1 | 2 | AY.98.1 | 0.000048 |
ORF1ab/nsp3 | 383 | Q383Q | caA | caG | 2 | 2 | B.1 | 0.000018 |
ORF1ab/nsp3 | 383 | Q383K | Caa | Aaa | 2 | 2 | B.1 | 0.000018 |
ORF1ab/nsp3 | 383 | Q383H | caA | caC | 1 | 2 | B.1 | 0.000009 |
ORF1ab/nsp3 | 383 | Q383del1 | Caa | -aa | 1 | 2 | B.1 | 0.000009 |
ORF1ab/nsp3 | 383 | Q383del1 | cAa | c-a | 1 | 2 | B.1 | 0.000009 |
ORF1ab/nsp3 | 383 | Q383H | caA | caT | 1 | 2 | B.1 | 0.000009 |
ORF1ab/nsp3 | 383 | Q383del | CAA | --- | 2 | 2 | B.1.1 | 0.000036 |
ORF1ab/nsp3 | 383 | Q383H | caA | caT | 1 | 2 | B.1.1 | 0.000018 |
ORF1ab/nsp3 | 383 | Q383H | caA | caC | 1 | 2 | B.1.1 | 0.000018 |
ORF1ab/nsp3 | 383 | Q383R | cAa | cGa | 2 | 2 | B.1.177 | 0.000026 |
ORF1ab/nsp3 | 383 | Q383Q | caA | caG | 2 | 2 | B.1.2 | 0.000018 |
ORF1ab/nsp3 | 383 | Q383H | caA | caC | 2 | 2 | B.1.243 | 0.000139 |
ORF1ab/nsp3 | 383 | Q383Q | caA | caG | 2 | 2 | B.1.351 | 0.000059 |
ORF1ab/nsp3 | 383 | Q383K | Caa | Aaa | 2 | 2 | B.1.426 | 0.002018 |
ORF1ab/nsp3 | 383 | Q383del | CAA | --- | 2 | 2 | B.1.429 | 0.000047 |
ORF1ab/nsp3 | 383 | Q383del | CAA | --- | 2 | 2 | B.1.526 | 0.000047 |
ORF1ab/nsp3 | 383 | Q383Q | caA | caG | 2 | 2 | B.1.617.1 | 0.000258 |
ORF1ab/nsp3 | 383 | Q383K | Caa | Aaa | 2 | 2 | B.1.617.1 | 0.000258 |
ORF1ab/nsp3 | 383 | Q383del | CAA | --- | 2 | 2 | B.1.617.2 | 0.000008 |
ORF1ab/nsp3 | 383 | Q383del | CAA | --- | 2 | 2 | B.1.621 | 0.000177 |
ORF1ab/nsp3 | 383 | Q383del | CAA | --- | 2 | 2 | C.37 | 0.000232 |
ORF1ab/nsp3 | 383 | Q383X | Caa | Taa | 2 | 2 | D.2 | 0.00015 |
ORF1ab/nsp3 | 383 | Q383K | Caa | Aaa | 2 | 2 | P.1 | 0.000032 |
ORF1ab/nsp3 | 383 | Q383del | CAA | --- | 2 | 2 | P.1.12 | 0.000968 |
ORF1ab/nsp3 | 383 | Q383K | Caa | Aaa | 2 | 2 | P.1.9 | 0.009615 |
ORF1ab/nsp3 | 383 | Q383X | Caa | Taa | 1 | 1 | 0.055556 | |
ORF1ab/nsp3 | 383 | Q383del1 | cAa | c-a | 1 | 1 | A | 0.000387 |
ORF1ab/nsp3 | 383 | Q383X | Caa | Taa | 1 | 1 | A.1 | 0.000282 |
ORF1ab/nsp3 | 383 | Q383S | CAa | TCa | 1 | 1 | A.1 | 0.000282 |
ORF1ab/nsp3 | 383 | Q383H | caA | caT | 1 | 1 | A.2.4 | 0.003367 |
ORF1ab/nsp3 | 383 | Q383E | Caa | Gaa | 1 | 1 | A.2.4 | 0.003367 |
ORF1ab/nsp3 | 383 | Q383T | CAa | ACa | 1 | 1 | All | 0 |
ORF1ab/nsp3 | 383 | Q383S | CAa | TCa | 1 | 1 | All | 0 |
ORF1ab/nsp3 | 383 | Q383H | caA | caC | 1 | 1 | AU.2 | 0.002421 |
ORF1ab/nsp3 | 383 | Q383L | cAa | cTa | 1 | 1 | AY.102 | 0.000027 |
ORF1ab/nsp3 | 383 | Q383K | Caa | Aaa | 1 | 1 | AY.102 | 0.000027 |
ORF1ab/nsp3 | 383 | Q383del1 | cAa | c-a | 1 | 1 | AY.103 | 0.000006 |
ORF1ab/nsp3 | 383 | Q383L | cAa | cTa | 1 | 1 | AY.103 | 0.000006 |
ORF1ab/nsp3 | 383 | Q383R | cAa | cGa | 1 | 1 | AY.105 | 0.000643 |
ORF1ab/nsp3 | 383 | Q383K | Caa | Aaa | 1 | 1 | AY.113 | 0.000142 |
ORF1ab/nsp3 | 383 | Q383Q | caA | caG | 1 | 1 | AY.117 | 0.000085 |
ORF1ab/nsp3 | 383 | Q383L | cAa | cTa | 1 | 1 | AY.119 | 0.000035 |
ORF1ab/nsp3 | 383 | Q383del | CAA | --- | 1 | 1 | AY.16.1 | 0.00047 |
ORF1ab/nsp3 | 383 | Q383del | CAA | --- | 1 | 1 | AY.19 | 0.00114 |
ORF1ab/nsp3 | 383 | Q383del | CAA | --- | 1 | 1 | AY.20 | 0.000039 |
ORF1ab/nsp3 | 383 | Q383K | Caa | Aaa | 1 | 1 | AY.23 | 0.00007 |
ORF1ab/nsp3 | 383 | Q383H | caA | caT | 1 | 1 | AY.25 | 0.000006 |
ORF1ab/nsp3 | 383 | Q383Q | caA | caG | 1 | 1 | AY.26 | 0.000028 |
ORF1ab/nsp3 | 383 | Q383del1 | cAa | c-a | 1 | 1 | AY.26 | 0.000028 |
ORF1ab/nsp3 | 383 | Q383K | Caa | Aaa | 1 | 1 | AY.29 | 0.000016 |
ORF1ab/nsp3 | 383 | Q383del | CAA | --- | 1 | 1 | AY.29 | 0.000016 |
ORF1ab/nsp3 | 383 | Q383del | CAA | --- | 1 | 1 | AY.3 | 0.00001 |
ORF1ab/nsp3 | 383 | Q383del | CAA | --- | 1 | 1 | AY.33 | 0.000067 |
ORF1ab/nsp3 | 383 | Q383Q | caA | caG | 1 | 1 | AY.39 | 0.000025 |
ORF1ab/nsp3 | 383 | Q383K | Caa | Aaa | 1 | 1 | AY.39 | 0.000025 |
ORF1ab/nsp3 | 383 | Q383del | CAA | --- | 1 | 1 | AY.39 | 0.000025 |
ORF1ab/nsp3 | 383 | Q383K | Caa | Aaa | 1 | 1 | AY.39.1 | 0.00004 |
ORF1ab/nsp3 | 383 | Q383L | cAa | cTa | 1 | 1 | AY.4 | 0.000002 |
ORF1ab/nsp3 | 383 | Q383del | CAA | --- | 1 | 1 | AY.4.5 | 0.000107 |
ORF1ab/nsp3 | 383 | Q383R | cAa | cGa | 1 | 1 | AY.44 | 0.000006 |
ORF1ab/nsp3 | 383 | Q383del1 | cAa | c-a | 1 | 1 | AY.46 | 0.000104 |
ORF1ab/nsp3 | 383 | Q383del | CAA | --- | 1 | 1 | AY.47 | 0.000031 |
ORF1ab/nsp3 | 383 | Q383del1 | cAa | c-a | 1 | 1 | AY.47 | 0.000031 |
ORF1ab/nsp3 | 383 | Q383X | Caa | Taa | 1 | 1 | AY.5 | 0.000021 |
ORF1ab/nsp3 | 383 | Q383K | Caa | Aaa | 1 | 1 | AY.5 | 0.000021 |
ORF1ab/nsp3 | 383 | Q383H | caA | caT | 1 | 1 | AY.5 | 0.000021 |
ORF1ab/nsp3 | 383 | Q383del | CAA | --- | 1 | 1 | AY.5.3 | 0.000337 |
ORF1ab/nsp3 | 383 | Q383H | caA | caC | 1 | 1 | AY.55 | 0.000917 |
ORF1ab/nsp3 | 383 | Q383del | CAA | --- | 1 | 1 | AY.6 | 0.000041 |
ORF1ab/nsp3 | 383 | Q383del1 | cAa | c-a | 1 | 1 | AY.67 | 0.000464 |
ORF1ab/nsp3 | 383 | Q383Q | caA | caG | 1 | 1 | AY.68 | 0.000274 |
ORF1ab/nsp3 | 383 | Q383X | Caa | Taa | 1 | 1 | AY.7 | 0.000196 |
ORF1ab/nsp3 | 383 | Q383del1 | cAa | c-a | 1 | 1 | AY.92 | 0.000287 |
ORF1ab/nsp3 | 383 | Q383P | cAa | cCa | 1 | 1 | AY.93 | 0.000273 |
ORF1ab/nsp3 | 383 | Q383del | CAA | --- | 1 | 1 | AY.94 | 0.000443 |
ORF1ab/nsp3 | 383 | Q383H | caA | caT | 1 | 1 | AY.98 | 0.000079 |
ORF1ab/nsp3 | 383 | Q383K | Caa | Aaa | 1 | 1 | AY.98.1 | 0.000048 |
ORF1ab/nsp3 | 383 | Q383H | caA | caT | 1 | 1 | AY.98.1 | 0.000048 |
ORF1ab/nsp3 | 383 | Q383R | cAa | cGa | 1 | 1 | AY.99 | 0.001049 |
ORF1ab/nsp3 | 383 | Q383del1 | cAa | c-a | 1 | 1 | B | 0.000128 |
ORF1ab/nsp3 | 383 | Q383K | Caa | Aaa | 1 | 1 | B | 0.000128 |
ORF1ab/nsp3 | 383 | Q383E | Caa | Gaa | 1 | 1 | B.1 | 0.000009 |
ORF1ab/nsp3 | 383 | Q383L | cAa | cTa | 1 | 1 | B.1 | 0.000009 |
ORF1ab/nsp3 | 383 | Q383R | cAa | cGa | 1 | 1 | B.1 | 0.000009 |
ORF1ab/nsp3 | 383 | Q383K | Caa | Aaa | 1 | 1 | B.1.1 | 0.000018 |
ORF1ab/nsp3 | 383 | Q383X | Caa | Taa | 1 | 1 | B.1.1 | 0.000018 |
ORF1ab/nsp3 | 383 | Q383del2 | CAA | T-- | 1 | 1 | B.1.1.148 | 0.008772 |
ORF1ab/nsp3 | 383 | Q383del | CAA | --- | 1 | 1 | B.1.1.192 | 0.002309 |
ORF1ab/nsp3 | 383 | Q383del | CAA | --- | 1 | 1 | B.1.1.221 | 0.010101 |
ORF1ab/nsp3 | 383 | Q383del | CAA | --- | 1 | 1 | B.1.1.315 | 0.008475 |
ORF1ab/nsp3 | 383 | Q383X | Caa | Taa | 1 | 1 | B.1.1.318 | 0.000302 |
ORF1ab/nsp3 | 383 | Q383R | cAa | cGa | 1 | 1 | B.1.1.318 | 0.000302 |
ORF1ab/nsp3 | 383 | Q383del | CAA | --- | 1 | 1 | B.1.1.33 | 0.000421 |
ORF1ab/nsp3 | 383 | Q383H | caA | caC | 1 | 1 | B.1.1.369 | 0.000446 |
ORF1ab/nsp3 | 383 | Q383R | cAa | cGa | 1 | 1 | B.1.1.519 | 0.00004 |
ORF1ab/nsp3 | 383 | Q383Q | caA | caG | 1 | 1 | B.1.1.519 | 0.00004 |
ORF1ab/nsp3 | 383 | Q383T | CAa | ACa | 1 | 1 | B.1.1.7 | 0.000001 |
ORF1ab/nsp3 | 383 | Q383P | cAa | cCa | 1 | 1 | B.1.1.7 | 0.000001 |
ORF1ab/nsp3 | 383 | Q383X | Caa | Taa | 1 | 1 | B.1.1.70 | 0.000341 |
ORF1ab/nsp3 | 383 | Q383H | caA | caT | 1 | 1 | B.1.111 | 0.001175 |
ORF1ab/nsp3 | 383 | Q383del | CAA | --- | 1 | 1 | B.1.140 | 0.018868 |
ORF1ab/nsp3 | 383 | Q383del2 | CAa | --a | 1 | 1 | B.1.160 | 0.000031 |
ORF1ab/nsp3 | 383 | Q383Q | caA | caG | 1 | 1 | B.1.160 | 0.000031 |
ORF1ab/nsp3 | 383 | Q383del1 | cAa | c-a | 1 | 1 | B.1.160.9 | 0.007194 |
ORF1ab/nsp3 | 383 | Q383Q | caA | caG | 1 | 1 | B.1.177 | 0.000013 |
ORF1ab/nsp3 | 383 | Q383del | CAA | --- | 1 | 1 | B.1.177.4 | 0.000211 |
ORF1ab/nsp3 | 383 | Q383X | Caa | Taa | 1 | 1 | B.1.177.7 | 0.000165 |
ORF1ab/nsp3 | 383 | Q383P | cAa | cCa | 1 | 1 | B.1.2 | 0.000009 |
ORF1ab/nsp3 | 383 | Q383X | Caa | Taa | 1 | 1 | B.1.206 | 0.000816 |
ORF1ab/nsp3 | 383 | Q383del | CAA | --- | 1 | 1 | B.1.221 | 0.000071 |
ORF1ab/nsp3 | 383 | Q383P | cAa | cCa | 1 | 1 | B.1.223 | 0.002778 |
ORF1ab/nsp3 | 383 | Q383H | caA | caT | 1 | 1 | B.1.234 | 0.000132 |
ORF1ab/nsp3 | 383 | Q383Q | caA | caG | 1 | 1 | B.1.258 | 0.000067 |
ORF1ab/nsp3 | 383 | Q383K | Caa | Aaa | 1 | 1 | B.1.258.17 | 0.000104 |
ORF1ab/nsp3 | 383 | Q383del | CAA | --- | 1 | 1 | B.1.258.17 | 0.000104 |
ORF1ab/nsp3 | 383 | Q383del1 | cAa | c-a | 1 | 1 | B.1.311 | 0.000275 |
ORF1ab/nsp3 | 383 | Q383K | Caa | Aaa | 1 | 1 | B.1.333 | 0.010526 |
ORF1ab/nsp3 | 383 | Q383del1 | Caa | -aa | 1 | 1 | B.1.351 | 0.00003 |
ORF1ab/nsp3 | 383 | Q383H | caA | caT | 1 | 1 | B.1.351 | 0.00003 |
ORF1ab/nsp3 | 383 | Q383del | CAA | --- | 1 | 1 | B.1.351 | 0.00003 |
ORF1ab/nsp3 | 383 | Q383del | CAA | --- | 1 | 1 | B.1.351.2 | 0.000303 |
ORF1ab/nsp3 | 383 | Q383X | Caa | Taa | 1 | 1 | B.1.36 | 0.000146 |
ORF1ab/nsp3 | 383 | Q383L | cAa | cTa | 1 | 1 | B.1.36.18 | 0.00042 |
ORF1ab/nsp3 | 383 | Q383del | CAA | --- | 1 | 1 | B.1.36.29 | 0.000517 |
ORF1ab/nsp3 | 383 | Q383R | cAa | cGa | 1 | 1 | B.1.36.31 | 0.001751 |
ORF1ab/nsp3 | 383 | Q383R | cAa | cGa | 1 | 1 | B.1.369 | 0.000285 |
ORF1ab/nsp3 | 383 | Q383del1 | cAa | c-a | 1 | 1 | B.1.377 | 0.004566 |
ORF1ab/nsp3 | 383 | Q383H | caA | caC | 1 | 1 | B.1.404 | 0.001302 |
ORF1ab/nsp3 | 383 | Q383K | Caa | Aaa | 1 | 1 | B.1.429 | 0.000024 |
ORF1ab/nsp3 | 383 | Q383K | Caa | Aaa | 1 | 1 | B.1.525 | 0.000113 |
ORF1ab/nsp3 | 383 | Q383del1 | cAa | c-a | 1 | 1 | B.1.582 | 0.000491 |
ORF1ab/nsp3 | 383 | Q383del | CAA | --- | 1 | 1 | B.1.595 | 0.000261 |
ORF1ab/nsp3 | 383 | Q383del1 | caA | ca- | 1 | 1 | B.1.595 | 0.000261 |
ORF1ab/nsp3 | 383 | Q383X | Caa | Taa | 1 | 1 | B.1.612 | 0.002653 |
ORF1ab/nsp3 | 383 | Q383X | CaA | TaG | 1 | 1 | B.1.617.1 | 0.000129 |
ORF1ab/nsp3 | 383 | Q383H | caA | caC | 1 | 1 | B.1.617.2 | 0.000004 |
ORF1ab/nsp3 | 383 | Q383K | Caa | Aaa | 1 | 1 | B.1.617.2 | 0.000004 |
ORF1ab/nsp3 | 383 | Q383del1 | cAa | c-a | 1 | 1 | B.1.617.2 | 0.000004 |
ORF1ab/nsp3 | 383 | Q383K | Caa | Aaa | 1 | 1 | B.1.621.1 | 0.000506 |
ORF1ab/nsp3 | 383 | Q383Q | caA | caG | 1 | 1 | B.4.5 | 0.011905 |
ORF1ab/nsp3 | 383 | Q383del | CAA | --- | 1 | 1 | B.57 | 0.015152 |
ORF1ab/nsp3 | 383 | Q383R | cAa | cGa | 1 | 1 | C.35 | 0.000774 |
ORF1ab/nsp3 | 383 | Q383K | Caa | Aaa | 1 | 1 | D.2 | 0.000075 |
ORF1ab/nsp3 | 383 | Q383H | caA | caC | 1 | 1 | D.2 | 0.000075 |
ORF1ab/nsp3 | 383 | Q383del1 | CAa | T-a | 1 | 1 | D.2 | 0.000075 |
ORF1ab/nsp3 | 383 | Q383del | CAA | --- | 1 | 1 | N.6 | 0.007092 |
ORF1ab/nsp3 | 383 | Q383P | cAa | cCa | 1 | 1 | P.1 | 0.000016 |
ORF1ab/nsp3 | 383 | Q383del | CAA | --- | 1 | 1 | P.1 | 0.000016 |
ORF1ab/nsp3 | 383 | Q383H | caA | caC | 1 | 1 | P.1.15 | 0.000232 |
ORF1ab/nsp3 | 383 | Q383del | CAA | --- | 1 | 1 | Q.2 | 0.000613 |
ORF1ab/nsp3 | 383 | Q383del | CAA | --- | 1 | 1 | R.1 | 0.00009 |
CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk
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