CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF1ab/nsp3 : CodonNum = 383

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF1ab/nsp3383Q383KQ1201KnonsynCaaAaa24924913866-3868
ORF1ab/nsp3383Q383HQ1201HnonsyncaAcaT1741550.8908053866-3868
ORF1ab/nsp3383Q383HQ1201HnonsyncaAcaC174190.1091953866-3868
ORF1ab/nsp3383Q383delQ1201deldelCAA---13613613866-3868
ORF1ab/nsp3383Q383QQ1201QsyncaAcaG12712713866-3868
ORF1ab/nsp3383Q383LQ1201LnonsyncAacTa83820.9879523866-3868
ORF1ab/nsp3383Q383LQ1201LnonsyncAAcTT8310.01204823866-3868
ORF1ab/nsp3383Q383RQ1201RnonsyncAacGa717113866-3868
ORF1ab/nsp3383Q383XQ1201XnonsynCaaTaa30290.9666673866-3868
ORF1ab/nsp3383Q383XQ1201XnonsynCaATaG3010.03333333866-3868
ORF1ab/nsp3383Q383del1Q1201del1delcAac-a24200.8333333866-3868
ORF1ab/nsp3383Q383del1Q1201del1delCaa-aa2420.08333333866-3868
ORF1ab/nsp3383Q383del1Q1201del1delCAaT-a2410.04166673866-3868
ORF1ab/nsp3383Q383del1Q1201del1delcaAca-2410.04166673866-3868
ORF1ab/nsp3383Q383PQ1201PnonsyncAacCa222213866-3868
ORF1ab/nsp3383Q383EQ1201EnonsynCaaGaa101013866-3868
ORF1ab/nsp3383Q383del2Q1201del2delcAAc--530.63866-3868
ORF1ab/nsp3383Q383del2Q1201del2delCAAT--510.23866-3868
ORF1ab/nsp3383Q383del2Q1201del2delCAa--a510.23866-3868
ORF1ab/nsp3383Q383TQ1201TnonsynCAaACa1113866-3868
ORF1ab/nsp3383Q383SQ1201SnonsynCAaTCa1113866-3868

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF1ab/nsp3383Q383KCaaAaa249249All0.000048
ORF1ab/nsp3383Q383KCaaAaa179179AY.40.000279
ORF1ab/nsp3383Q383HcaAcaT155174All0.00003
ORF1ab/nsp3383Q383HcaAcaC19174All0.000004
ORF1ab/nsp3383Q383HcaAcaT139139B.1.1.5280.668269
ORF1ab/nsp3383Q383delCAA---136136All0.000026
ORF1ab/nsp3383Q383QcaAcaG127127All0.000024
ORF1ab/nsp3383Q383LcAacTa8283All0.000016
ORF1ab/nsp3383Q383LcAAcTT183All0
ORF1ab/nsp3383Q383RcAacGa7171All0.000014
ORF1ab/nsp3383Q383LcAacTa5151B.1.3970.247573
ORF1ab/nsp3383Q383QcaAcaG4343AY.440.000262
ORF1ab/nsp3383Q383XCaaTaa2930All0.000006
ORF1ab/nsp3383Q383XCaATaG130All0
ORF1ab/nsp3383Q383del1cAac-a2024All0.000004
ORF1ab/nsp3383Q383del1Caa-aa224All0
ORF1ab/nsp3383Q383del1caAca-124All0
ORF1ab/nsp3383Q383del1CAaT-a124All0
ORF1ab/nsp3383Q383KCaaAaa2424B.1.1770.000316
ORF1ab/nsp3383Q383delCAA---2323B.1.1.70.000021
ORF1ab/nsp3383Q383delCAA---2323B.1.20.000203
ORF1ab/nsp3383Q383PcAacCa2222All0.000004
ORF1ab/nsp3383Q383QcaAcaG2020B.1.617.20.000075
ORF1ab/nsp3383Q383QcaAcaG1515B.1.1.70.000013
ORF1ab/nsp3383Q383LcAacTa1313AT.10.066667
ORF1ab/nsp3383Q383delCAA---1313AY.40.00002
ORF1ab/nsp3383Q383RcAacGa1313AY.430.000058
ORF1ab/nsp3383Q383PcAacCa1313P.1.140.000621
ORF1ab/nsp3383Q383QcaAcaG1111AY.60.000452
ORF1ab/nsp3383Q383RcAacGa1111B.1.1.70.00001
ORF1ab/nsp3383Q383ECaaGaa1010All0.000002
ORF1ab/nsp3383Q383RcAacGa99AY.30.00009
ORF1ab/nsp3383Q383QcaAcaG99AY.430.00004
ORF1ab/nsp3383Q383ECaaGaa88B.1.1.5190.000318
ORF1ab/nsp3383Q383RcAacGa77AY.3.10.000597
ORF1ab/nsp3383Q383delCAA---77AY.440.000043
ORF1ab/nsp3383Q383RcAacGa77AY.50.000145
ORF1ab/nsp3383Q383RcAacGa77B.1.617.20.000026
ORF1ab/nsp3383Q383delCAA---66B.10.000055
ORF1ab/nsp3383Q383XCaaTaa66B.1.1.70.000005
ORF1ab/nsp3383Q383LcAacTa66B.1.1.70.000005
ORF1ab/nsp3383Q383del2cAAc--35All0.000001
ORF1ab/nsp3383Q383del2CAAT--15All0
ORF1ab/nsp3383Q383del2CAa--a15All0
ORF1ab/nsp3383Q383delCAA---55AY.250.00003
ORF1ab/nsp3383Q383QcaAcaG55AY.980.000395
ORF1ab/nsp3383Q383HcaAcaT55B.1.1.340.065789
ORF1ab/nsp3383Q383KCaaAaa55B.1.1.70.000004
ORF1ab/nsp3383Q383delCAA---55B.1.5960.000436
ORF1ab/nsp3383Q383LcAacTa55Q.10.000632
ORF1ab/nsp3383Q383XCaaTaa44B.10.000037
ORF1ab/nsp3383Q383QcaAcaG44B.1.1.3170.001647
ORF1ab/nsp3383Q383HcaAcaC34B.1.1.70.000003
ORF1ab/nsp3383Q383HcaAcaT14B.1.1.70.000001
ORF1ab/nsp3383Q383delCAA---44B.1.1770.000053
ORF1ab/nsp3383Q383del1cAac-a44B.1.20.000035
ORF1ab/nsp3383Q383XCaaTaa44B.1.20.000035
ORF1ab/nsp3383Q383PcAacCa44B.1.617.20.000015
ORF1ab/nsp3383Q383KCaaAaa330.166667
ORF1ab/nsp3383Q383HcaAcaC33AY.1030.000019
ORF1ab/nsp3383Q383KCaaAaa33AY.1030.000019
ORF1ab/nsp3383Q383QcaAcaG33AY.740.000347
ORF1ab/nsp3383Q383del2cAAc--33B.1.1.70.000003
ORF1ab/nsp3383Q383delCAA---33B.1.5250.000339
ORF1ab/nsp3383Q383HcaAcaC22AY.1020.000053
ORF1ab/nsp3383Q383RcAacGa22AY.120.2.10.000997
ORF1ab/nsp3383Q383RcAacGa22AY.140.000176
ORF1ab/nsp3383Q383KCaaAaa22AY.250.000012
ORF1ab/nsp3383Q383KCaaAaa22AY.260.000057
ORF1ab/nsp3383Q383KCaaAaa22AY.30.00002
ORF1ab/nsp3383Q383XCaaTaa22AY.40.000003
ORF1ab/nsp3383Q383RcAacGa22AY.40.000003
ORF1ab/nsp3383Q383KCaaAaa22AY.430.000009
ORF1ab/nsp3383Q383delCAA---22AY.430.000009
ORF1ab/nsp3383Q383del1cAac-a22AY.440.000012
ORF1ab/nsp3383Q383delCAA---22AY.75.10.000361
ORF1ab/nsp3383Q383LcAAcTT12AY.98.10.000048
ORF1ab/nsp3383Q383LcAacTa12AY.98.10.000048
ORF1ab/nsp3383Q383QcaAcaG22B.10.000018
ORF1ab/nsp3383Q383KCaaAaa22B.10.000018
ORF1ab/nsp3383Q383HcaAcaC12B.10.000009
ORF1ab/nsp3383Q383del1Caa-aa12B.10.000009
ORF1ab/nsp3383Q383del1cAac-a12B.10.000009
ORF1ab/nsp3383Q383HcaAcaT12B.10.000009
ORF1ab/nsp3383Q383delCAA---22B.1.10.000036
ORF1ab/nsp3383Q383HcaAcaT12B.1.10.000018
ORF1ab/nsp3383Q383HcaAcaC12B.1.10.000018
ORF1ab/nsp3383Q383RcAacGa22B.1.1770.000026
ORF1ab/nsp3383Q383QcaAcaG22B.1.20.000018
ORF1ab/nsp3383Q383HcaAcaC22B.1.2430.000139
ORF1ab/nsp3383Q383QcaAcaG22B.1.3510.000059
ORF1ab/nsp3383Q383KCaaAaa22B.1.4260.002018
ORF1ab/nsp3383Q383delCAA---22B.1.4290.000047
ORF1ab/nsp3383Q383delCAA---22B.1.5260.000047
ORF1ab/nsp3383Q383QcaAcaG22B.1.617.10.000258
ORF1ab/nsp3383Q383KCaaAaa22B.1.617.10.000258
ORF1ab/nsp3383Q383delCAA---22B.1.617.20.000008
ORF1ab/nsp3383Q383delCAA---22B.1.6210.000177
ORF1ab/nsp3383Q383delCAA---22C.370.000232
ORF1ab/nsp3383Q383XCaaTaa22D.20.00015
ORF1ab/nsp3383Q383KCaaAaa22P.10.000032
ORF1ab/nsp3383Q383delCAA---22P.1.120.000968
ORF1ab/nsp3383Q383KCaaAaa22P.1.90.009615
ORF1ab/nsp3383Q383XCaaTaa110.055556
ORF1ab/nsp3383Q383del1cAac-a11A0.000387
ORF1ab/nsp3383Q383XCaaTaa11A.10.000282
ORF1ab/nsp3383Q383SCAaTCa11A.10.000282
ORF1ab/nsp3383Q383HcaAcaT11A.2.40.003367
ORF1ab/nsp3383Q383ECaaGaa11A.2.40.003367
ORF1ab/nsp3383Q383TCAaACa11All0
ORF1ab/nsp3383Q383SCAaTCa11All0
ORF1ab/nsp3383Q383HcaAcaC11AU.20.002421
ORF1ab/nsp3383Q383LcAacTa11AY.1020.000027
ORF1ab/nsp3383Q383KCaaAaa11AY.1020.000027
ORF1ab/nsp3383Q383del1cAac-a11AY.1030.000006
ORF1ab/nsp3383Q383LcAacTa11AY.1030.000006
ORF1ab/nsp3383Q383RcAacGa11AY.1050.000643
ORF1ab/nsp3383Q383KCaaAaa11AY.1130.000142
ORF1ab/nsp3383Q383QcaAcaG11AY.1170.000085
ORF1ab/nsp3383Q383LcAacTa11AY.1190.000035
ORF1ab/nsp3383Q383delCAA---11AY.16.10.00047
ORF1ab/nsp3383Q383delCAA---11AY.190.00114
ORF1ab/nsp3383Q383delCAA---11AY.200.000039
ORF1ab/nsp3383Q383KCaaAaa11AY.230.00007
ORF1ab/nsp3383Q383HcaAcaT11AY.250.000006
ORF1ab/nsp3383Q383QcaAcaG11AY.260.000028
ORF1ab/nsp3383Q383del1cAac-a11AY.260.000028
ORF1ab/nsp3383Q383KCaaAaa11AY.290.000016
ORF1ab/nsp3383Q383delCAA---11AY.290.000016
ORF1ab/nsp3383Q383delCAA---11AY.30.00001
ORF1ab/nsp3383Q383delCAA---11AY.330.000067
ORF1ab/nsp3383Q383QcaAcaG11AY.390.000025
ORF1ab/nsp3383Q383KCaaAaa11AY.390.000025
ORF1ab/nsp3383Q383delCAA---11AY.390.000025
ORF1ab/nsp3383Q383KCaaAaa11AY.39.10.00004
ORF1ab/nsp3383Q383LcAacTa11AY.40.000002
ORF1ab/nsp3383Q383delCAA---11AY.4.50.000107
ORF1ab/nsp3383Q383RcAacGa11AY.440.000006
ORF1ab/nsp3383Q383del1cAac-a11AY.460.000104
ORF1ab/nsp3383Q383delCAA---11AY.470.000031
ORF1ab/nsp3383Q383del1cAac-a11AY.470.000031
ORF1ab/nsp3383Q383XCaaTaa11AY.50.000021
ORF1ab/nsp3383Q383KCaaAaa11AY.50.000021
ORF1ab/nsp3383Q383HcaAcaT11AY.50.000021
ORF1ab/nsp3383Q383delCAA---11AY.5.30.000337
ORF1ab/nsp3383Q383HcaAcaC11AY.550.000917
ORF1ab/nsp3383Q383delCAA---11AY.60.000041
ORF1ab/nsp3383Q383del1cAac-a11AY.670.000464
ORF1ab/nsp3383Q383QcaAcaG11AY.680.000274
ORF1ab/nsp3383Q383XCaaTaa11AY.70.000196
ORF1ab/nsp3383Q383del1cAac-a11AY.920.000287
ORF1ab/nsp3383Q383PcAacCa11AY.930.000273
ORF1ab/nsp3383Q383delCAA---11AY.940.000443
ORF1ab/nsp3383Q383HcaAcaT11AY.980.000079
ORF1ab/nsp3383Q383KCaaAaa11AY.98.10.000048
ORF1ab/nsp3383Q383HcaAcaT11AY.98.10.000048
ORF1ab/nsp3383Q383RcAacGa11AY.990.001049
ORF1ab/nsp3383Q383del1cAac-a11B0.000128
ORF1ab/nsp3383Q383KCaaAaa11B0.000128
ORF1ab/nsp3383Q383ECaaGaa11B.10.000009
ORF1ab/nsp3383Q383LcAacTa11B.10.000009
ORF1ab/nsp3383Q383RcAacGa11B.10.000009
ORF1ab/nsp3383Q383KCaaAaa11B.1.10.000018
ORF1ab/nsp3383Q383XCaaTaa11B.1.10.000018
ORF1ab/nsp3383Q383del2CAAT--11B.1.1.1480.008772
ORF1ab/nsp3383Q383delCAA---11B.1.1.1920.002309
ORF1ab/nsp3383Q383delCAA---11B.1.1.2210.010101
ORF1ab/nsp3383Q383delCAA---11B.1.1.3150.008475
ORF1ab/nsp3383Q383XCaaTaa11B.1.1.3180.000302
ORF1ab/nsp3383Q383RcAacGa11B.1.1.3180.000302
ORF1ab/nsp3383Q383delCAA---11B.1.1.330.000421
ORF1ab/nsp3383Q383HcaAcaC11B.1.1.3690.000446
ORF1ab/nsp3383Q383RcAacGa11B.1.1.5190.00004
ORF1ab/nsp3383Q383QcaAcaG11B.1.1.5190.00004
ORF1ab/nsp3383Q383TCAaACa11B.1.1.70.000001
ORF1ab/nsp3383Q383PcAacCa11B.1.1.70.000001
ORF1ab/nsp3383Q383XCaaTaa11B.1.1.700.000341
ORF1ab/nsp3383Q383HcaAcaT11B.1.1110.001175
ORF1ab/nsp3383Q383delCAA---11B.1.1400.018868
ORF1ab/nsp3383Q383del2CAa--a11B.1.1600.000031
ORF1ab/nsp3383Q383QcaAcaG11B.1.1600.000031
ORF1ab/nsp3383Q383del1cAac-a11B.1.160.90.007194
ORF1ab/nsp3383Q383QcaAcaG11B.1.1770.000013
ORF1ab/nsp3383Q383delCAA---11B.1.177.40.000211
ORF1ab/nsp3383Q383XCaaTaa11B.1.177.70.000165
ORF1ab/nsp3383Q383PcAacCa11B.1.20.000009
ORF1ab/nsp3383Q383XCaaTaa11B.1.2060.000816
ORF1ab/nsp3383Q383delCAA---11B.1.2210.000071
ORF1ab/nsp3383Q383PcAacCa11B.1.2230.002778
ORF1ab/nsp3383Q383HcaAcaT11B.1.2340.000132
ORF1ab/nsp3383Q383QcaAcaG11B.1.2580.000067
ORF1ab/nsp3383Q383KCaaAaa11B.1.258.170.000104
ORF1ab/nsp3383Q383delCAA---11B.1.258.170.000104
ORF1ab/nsp3383Q383del1cAac-a11B.1.3110.000275
ORF1ab/nsp3383Q383KCaaAaa11B.1.3330.010526
ORF1ab/nsp3383Q383del1Caa-aa11B.1.3510.00003
ORF1ab/nsp3383Q383HcaAcaT11B.1.3510.00003
ORF1ab/nsp3383Q383delCAA---11B.1.3510.00003
ORF1ab/nsp3383Q383delCAA---11B.1.351.20.000303
ORF1ab/nsp3383Q383XCaaTaa11B.1.360.000146
ORF1ab/nsp3383Q383LcAacTa11B.1.36.180.00042
ORF1ab/nsp3383Q383delCAA---11B.1.36.290.000517
ORF1ab/nsp3383Q383RcAacGa11B.1.36.310.001751
ORF1ab/nsp3383Q383RcAacGa11B.1.3690.000285
ORF1ab/nsp3383Q383del1cAac-a11B.1.3770.004566
ORF1ab/nsp3383Q383HcaAcaC11B.1.4040.001302
ORF1ab/nsp3383Q383KCaaAaa11B.1.4290.000024
ORF1ab/nsp3383Q383KCaaAaa11B.1.5250.000113
ORF1ab/nsp3383Q383del1cAac-a11B.1.5820.000491
ORF1ab/nsp3383Q383delCAA---11B.1.5950.000261
ORF1ab/nsp3383Q383del1caAca-11B.1.5950.000261
ORF1ab/nsp3383Q383XCaaTaa11B.1.6120.002653
ORF1ab/nsp3383Q383XCaATaG11B.1.617.10.000129
ORF1ab/nsp3383Q383HcaAcaC11B.1.617.20.000004
ORF1ab/nsp3383Q383KCaaAaa11B.1.617.20.000004
ORF1ab/nsp3383Q383del1cAac-a11B.1.617.20.000004
ORF1ab/nsp3383Q383KCaaAaa11B.1.621.10.000506
ORF1ab/nsp3383Q383QcaAcaG11B.4.50.011905
ORF1ab/nsp3383Q383delCAA---11B.570.015152
ORF1ab/nsp3383Q383RcAacGa11C.350.000774
ORF1ab/nsp3383Q383KCaaAaa11D.20.000075
ORF1ab/nsp3383Q383HcaAcaC11D.20.000075
ORF1ab/nsp3383Q383del1CAaT-a11D.20.000075
ORF1ab/nsp3383Q383delCAA---11N.60.007092
ORF1ab/nsp3383Q383PcAacCa11P.10.000016
ORF1ab/nsp3383Q383delCAA---11P.10.000016
ORF1ab/nsp3383Q383HcaAcaC11P.1.150.000232
ORF1ab/nsp3383Q383delCAA---11Q.20.000613
ORF1ab/nsp3383Q383delCAA---11R.10.00009