CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF1ab/nsp3 : CodonNum = 378

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF1ab/nsp3378E378VE1196VnonsyngAagTa622462160.9987153851-3853
ORF1ab/nsp3378E378VE1196VnonsyngAAgTC622450.0008033423851-3853
ORF1ab/nsp3378E378VE1196VnonsyngAAgTT622430.0004820053851-3853
ORF1ab/nsp3378E378EE1196EsyngaAgaG56156113851-3853
ORF1ab/nsp3378E378GE1196GnonsyngAagGa1871860.9946523851-3853
ORF1ab/nsp3378E378GE1196GnonsyngAAgGG18710.005347593851-3853
ORF1ab/nsp3378E378KE1196KnonsynGaaAaa1551500.9677423851-3853
ORF1ab/nsp3378E378KE1196KnonsynGaAAaG15550.03225813851-3853
ORF1ab/nsp3378E378DE1196DnonsyngaAgaC138860.6231883851-3853
ORF1ab/nsp3378E378DE1196DnonsyngaAgaT138520.3768123851-3853
ORF1ab/nsp3378E378delE1196deldelGAA---11411413851-3853
ORF1ab/nsp3378E378IE1196InonsynGAaATa81400.4938273851-3853
ORF1ab/nsp3378E378IE1196InonsynGAAATT81380.4691363851-3853
ORF1ab/nsp3378E378IE1196InonsynGAAATC8130.0370373851-3853
ORF1ab/nsp3378E378AE1196AnonsyngAagCa69680.9855073851-3853
ORF1ab/nsp3378E378XE1196XnonsynGaaTaa69640.9275363851-3853
ORF1ab/nsp3378E378XE1196XnonsynGaATaG6940.0579713851-3853
ORF1ab/nsp3378E378AE1196AnonsyngAAgCG6910.01449283851-3853
ORF1ab/nsp3378E378XE1196XnonsynGAaTGa6910.01449283851-3853
ORF1ab/nsp3378E378NE1196NnonsynGaAAaT47440.936173851-3853
ORF1ab/nsp3378E378NE1196NnonsynGaAAaC4730.06382983851-3853
ORF1ab/nsp3378E378LE1196LnonsynGAaTTa43390.9069773851-3853
ORF1ab/nsp3378E378LE1196LnonsynGAATTG4320.04651163851-3853
ORF1ab/nsp3378E378LE1196LnonsynGAACTG4310.02325583851-3853
ORF1ab/nsp3378E378LE1196LnonsynGAaCTa4310.02325583851-3853
ORF1ab/nsp3378E378YE1196YnonsynGaATaT41400.975613851-3853
ORF1ab/nsp3378E378YE1196YnonsynGaATaC4110.02439023851-3853
ORF1ab/nsp3378E378FE1196FnonsynGAATTT38360.9473683851-3853
ORF1ab/nsp3378E378FE1196FnonsynGAATTC3820.05263163851-3853
ORF1ab/nsp3378E378TE1196TnonsynGAaACa1160.5454553851-3853
ORF1ab/nsp3378E378SE1196SnonsynGAaTCa1160.5454553851-3853
ORF1ab/nsp3378E378SE1196SnonsynGAATCT1130.2727273851-3853
ORF1ab/nsp3378E378TE1196TnonsynGAAACT1130.2727273851-3853
ORF1ab/nsp3378E378TE1196TnonsynGAAACC1110.09090913851-3853
ORF1ab/nsp3378E378SE1196SnonsynGAATCC1110.09090913851-3853
ORF1ab/nsp3378E378SE1196SnonsynGAATCG1110.09090913851-3853
ORF1ab/nsp3378E378TE1196TnonsynGAAACG1110.09090913851-3853
ORF1ab/nsp3378E378del1E1196del1delgAag-a860.753851-3853
ORF1ab/nsp3378E378del1E1196del1delGaa-aa810.1253851-3853
ORF1ab/nsp3378E378del1E1196del1delgaAga-810.1253851-3853
ORF1ab/nsp3378E378QE1196QnonsynGaaCaa540.83851-3853
ORF1ab/nsp3378E378QE1196QnonsynGaACaG510.23851-3853
ORF1ab/nsp3378E378RE1196RnonsynGAaAGa2213851-3853
ORF1ab/nsp3378E378del2E1196del2delgAAg--210.53851-3853
ORF1ab/nsp3378E378del2E1196del2delGAA--N210.53851-3853
ORF1ab/nsp3378E378ME1196MnonsynGAAATG1113851-3853

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF1ab/nsp3378E378VgAagTa62166224All0.001189
ORF1ab/nsp3378E378VgAAgTC56224All0.000001
ORF1ab/nsp3378E378VgAAgTT36224All0.000001
ORF1ab/nsp3378E378VgAagTa28652866B.1.1.3180.864514
ORF1ab/nsp3378E378VgAAgTT12866B.1.1.3180.000302
ORF1ab/nsp3378E378VgAagTa11981198AZ.20.98358
ORF1ab/nsp3378E378VgAagTa11501150AZ.10.997398
ORF1ab/nsp3378E378VgAagTa656656AZ.30.99696
ORF1ab/nsp3378E378EgaAgaG561561All0.000107
ORF1ab/nsp3378E378EgaAgaG467467AY.40.000727
ORF1ab/nsp3378E378GgAagGa186187All0.000036
ORF1ab/nsp3378E378GgAAgGG1187All0
ORF1ab/nsp3378E378KGaaAaa150155All0.000029
ORF1ab/nsp3378E378KGaAAaG5155All0.000001
ORF1ab/nsp3378E378DgaAgaC86138All0.000016
ORF1ab/nsp3378E378DgaAgaT52138All0.00001
ORF1ab/nsp3378E378VgAagTa119119AZ.61
ORF1ab/nsp3378E378delGAA---114114All0.000022
ORF1ab/nsp3378E378VgAagTa109109AZ.2.10.886179
ORF1ab/nsp3378E378KGaaAaa8387B.1.1.70.000074
ORF1ab/nsp3378E378KGaAAaG487B.1.1.70.000004
ORF1ab/nsp3378E378IGAaATa4081All0.000008
ORF1ab/nsp3378E378IGAAATT3881All0.000007
ORF1ab/nsp3378E378IGAAATC381All0.000001
ORF1ab/nsp3378E378IGAaATa3774B.1.1.70.000033
ORF1ab/nsp3378E378IGAAATT3574B.1.1.70.000031
ORF1ab/nsp3378E378IGAAATC274B.1.1.70.000002
ORF1ab/nsp3378E378AgAagCa6869All0.000013
ORF1ab/nsp3378E378XGaaTaa6469All0.000012
ORF1ab/nsp3378E378XGaATaG469All0.000001
ORF1ab/nsp3378E378AgAAgCG169All0
ORF1ab/nsp3378E378XGAaTGa169All0
ORF1ab/nsp3378E378DgaAgaT4253B.1.1.70.000038
ORF1ab/nsp3378E378DgaAgaC1153B.1.1.70.00001
ORF1ab/nsp3378E378XGaaTaa4550B.1.1.70.00004
ORF1ab/nsp3378E378XGaATaG450B.1.1.70.000004
ORF1ab/nsp3378E378XGAaTGa150B.1.1.70.000001
ORF1ab/nsp3378E378GgAagGa4949B.1.20.000431
ORF1ab/nsp3378E378NGaAAaT4447All0.000008
ORF1ab/nsp3378E378NGaAAaC347All0.000001
ORF1ab/nsp3378E378LGAaTTa3943All0.000007
ORF1ab/nsp3378E378LGAATTG243All0
ORF1ab/nsp3378E378LGAACTG143All0
ORF1ab/nsp3378E378LGAaCTa143All0
ORF1ab/nsp3378E378NGaAAaT4143B.1.1.70.000037
ORF1ab/nsp3378E378NGaAAaC243B.1.1.70.000002
ORF1ab/nsp3378E378YGaATaT4041All0.000008
ORF1ab/nsp3378E378YGaATaC141All0
ORF1ab/nsp3378E378VgAagTa4141AY.250.000247
ORF1ab/nsp3378E378LGAaTTa3640B.1.1.70.000032
ORF1ab/nsp3378E378LGAATTG240B.1.1.70.000002
ORF1ab/nsp3378E378LGAaCTa140B.1.1.70.000001
ORF1ab/nsp3378E378LGAACTG140B.1.1.70.000001
ORF1ab/nsp3378E378FGAATTT3638All0.000007
ORF1ab/nsp3378E378FGAATTC238All0
ORF1ab/nsp3378E378YGaATaT3738B.1.1.70.000033
ORF1ab/nsp3378E378YGaATaC138B.1.1.70.000001
ORF1ab/nsp3378E378FGAATTT3334B.1.1.70.00003
ORF1ab/nsp3378E378FGAATTC134B.1.1.70.000001
ORF1ab/nsp3378E378GgAagGa3232B.1.1.70.000029
ORF1ab/nsp3378E378DgaAgaC2424AY.60.000987
ORF1ab/nsp3378E378EgaAgaG2121B.1.1.70.000019
ORF1ab/nsp3378E378delGAA---1717B.1.1.70.000015
ORF1ab/nsp3378E378GgAagGa1616AY.1130.002278
ORF1ab/nsp3378E378DgaAgaC1616B.10.000147
ORF1ab/nsp3378E378VgAagTa1013B.1.1.70.000009
ORF1ab/nsp3378E378VgAAgTT213B.1.1.70.000002
ORF1ab/nsp3378E378VgAAgTC113B.1.1.70.000001
ORF1ab/nsp3378E378DgaAgaC1313B.1.1110.015276
ORF1ab/nsp3378E378delGAA---1212AY.50.000248
ORF1ab/nsp3378E378VgAagTa1212B.1.1.1420.210526
ORF1ab/nsp3378E378AgAagCa1212B.1.1.70.000011
ORF1ab/nsp3378E378GgAagGa1212B.1.5680.013333
ORF1ab/nsp3378E378SGAaTCa611All0.000001
ORF1ab/nsp3378E378TGAaACa611All0.000001
ORF1ab/nsp3378E378SGAATCT311All0.000001
ORF1ab/nsp3378E378TGAAACT311All0.000001
ORF1ab/nsp3378E378TGAAACC111All0
ORF1ab/nsp3378E378TGAAACG111All0
ORF1ab/nsp3378E378SGAATCC111All0
ORF1ab/nsp3378E378SGAATCG111All0
ORF1ab/nsp3378E378KGaaAaa1111AY.40.000017
ORF1ab/nsp3378E378TGAaACa611B.1.1.70.000005
ORF1ab/nsp3378E378SGAaTCa611B.1.1.70.000005
ORF1ab/nsp3378E378SGAATCT311B.1.1.70.000003
ORF1ab/nsp3378E378TGAAACT311B.1.1.70.000003
ORF1ab/nsp3378E378TGAAACC111B.1.1.70.000001
ORF1ab/nsp3378E378TGAAACG111B.1.1.70.000001
ORF1ab/nsp3378E378SGAATCC111B.1.1.70.000001
ORF1ab/nsp3378E378SGAATCG111B.1.1.70.000001
ORF1ab/nsp3378E378AgAagCa1111P.1.90.052885
ORF1ab/nsp3378E378EgaAgaG1010AY.250.00006
ORF1ab/nsp3378E378GgAagGa1010AY.430.000044
ORF1ab/nsp3378E378VgAagTa1010B.10.000092
ORF1ab/nsp3378E378KGaaAaa1010B.10.000092
ORF1ab/nsp3378E378delGAA---1010B.1.20.000088
ORF1ab/nsp3378E378del1gAag-a68All0.000001
ORF1ab/nsp3378E378del1Gaa-aa18All0
ORF1ab/nsp3378E378del1gaAga-18All0
ORF1ab/nsp3378E378EgaAgaG88AY.1180.000501
ORF1ab/nsp3378E378GgAagGa88AY.40.000012
ORF1ab/nsp3378E378GgAagGa88B.1.4290.000188
ORF1ab/nsp3378E378AgAagCa88P.1.150.001859
ORF1ab/nsp3378E378VgAagTa77AT.10.035897
ORF1ab/nsp3378E378delGAA---66AY.250.000036
ORF1ab/nsp3378E378GgAagGa66AY.30.00006
ORF1ab/nsp3378E378delGAA---66AY.40.000009
ORF1ab/nsp3378E378GgAagGa66AY.420.000241
ORF1ab/nsp3378E378EgaAgaG66AY.910.004383
ORF1ab/nsp3378E378delGAA---66B.10.000055
ORF1ab/nsp3378E378VgAagTa66B.1.10.000109
ORF1ab/nsp3378E378DgaAgaC66B.1.20.000053
ORF1ab/nsp3378E378EgaAgaG66B.1.20.000053
ORF1ab/nsp3378E378VgAagTa66B.1.617.20.000023
ORF1ab/nsp3378E378QGaaCaa45All0.000001
ORF1ab/nsp3378E378QGaACaG15All0
ORF1ab/nsp3378E378AgAagCa55AY.40.000008
ORF1ab/nsp3378E378delGAA---55B.1.5960.000436
ORF1ab/nsp3378E378EgaAgaG55B.1.617.20.000019
ORF1ab/nsp3378E378KGaaAaa44AY.160.001519
ORF1ab/nsp3378E378AgAagCa44AY.250.000024
ORF1ab/nsp3378E378EgaAgaG44AY.420.000161
ORF1ab/nsp3378E378XGaaTaa44B.10.000037
ORF1ab/nsp3378E378GgAagGa44B.1.1.280.001245
ORF1ab/nsp3378E378delGAA---44B.1.1770.000053
ORF1ab/nsp3378E378EgaAgaG44B.1.177.720.013559
ORF1ab/nsp3378E378VgAagTa44B.1.20.000035
ORF1ab/nsp3378E378KGaaAaa44B.1.617.20.000015
ORF1ab/nsp3378E378EgaAgaG44C.370.000464
ORF1ab/nsp3378E378KGaaAaa44D.20.0003
ORF1ab/nsp3378E378EgaAgaG33AY.1020.00008
ORF1ab/nsp3378E378AgAagCa33AY.1030.000019
ORF1ab/nsp3378E378EgaAgaG33AY.200.000117
ORF1ab/nsp3378E378DgaAgaT33AY.40.000005
ORF1ab/nsp3378E378QGaaCaa23B.1.1.70.000002
ORF1ab/nsp3378E378QGaACaG13B.1.1.70.000001
ORF1ab/nsp3378E378AgAagCa33B.1.177.350.002073
ORF1ab/nsp3378E378AgAagCa33B.1.177.420.002683
ORF1ab/nsp3378E378EgaAgaG33B.1.4290.000071
ORF1ab/nsp3378E378delGAA---33B.1.617.20.000011
ORF1ab/nsp3378E378VgAagTa23P.10.000032
ORF1ab/nsp3378E378VgAAgTC13P.10.000016
ORF1ab/nsp3378E378GgAagGa120.055556
ORF1ab/nsp3378E378GgAAgGG120.055556
ORF1ab/nsp3378E378GgAagGa22A.2.40.006734
ORF1ab/nsp3378E378RGAaAGa22All0
ORF1ab/nsp3378E378del2gAAg--12All0
ORF1ab/nsp3378E378del2GAA--N12All0
ORF1ab/nsp3378E378DgaAgaC22AY.1200.000074
ORF1ab/nsp3378E378KGaaAaa22AY.130.000322
ORF1ab/nsp3378E378delGAA---22AY.16.10.00094
ORF1ab/nsp3378E378KGaaAaa22AY.250.000012
ORF1ab/nsp3378E378IGAaATa12AY.250.000006
ORF1ab/nsp3378E378IGAAATT12AY.250.000006
ORF1ab/nsp3378E378EgaAgaG22AY.4.50.000215
ORF1ab/nsp3378E378delGAA---22AY.430.000009
ORF1ab/nsp3378E378VgAagTa22AY.440.000012
ORF1ab/nsp3378E378AgAagCa22AY.440.000012
ORF1ab/nsp3378E378KGaAAaG12AY.440.000006
ORF1ab/nsp3378E378KGaaAaa12AY.440.000006
ORF1ab/nsp3378E378delGAA---22AY.75.10.000361
ORF1ab/nsp3378E378DgaAgaC22AY.870.001665
ORF1ab/nsp3378E378GgAagGa22B.10.000018
ORF1ab/nsp3378E378EgaAgaG22B.1.10.000036
ORF1ab/nsp3378E378GgAagGa22B.1.1.2960.036364
ORF1ab/nsp3378E378AgAagCa22B.1.1.4200.002012
ORF1ab/nsp3378E378RGAaAGa22B.1.1.70.000002
ORF1ab/nsp3378E378KGaaAaa22B.1.20.000018
ORF1ab/nsp3378E378GgAagGa22B.1.3510.000059
ORF1ab/nsp3378E378delGAA---22B.1.4290.000047
ORF1ab/nsp3378E378KGaaAaa22B.1.466.20.000782
ORF1ab/nsp3378E378delGAA---22B.1.5250.000226
ORF1ab/nsp3378E378delGAA---22B.1.5260.000047
ORF1ab/nsp3378E378VgAagTa22B.1.5760.001813
ORF1ab/nsp3378E378IGAaATa12B.1.5760.000907
ORF1ab/nsp3378E378IGAAATT12B.1.5760.000907
ORF1ab/nsp3378E378del1gAag-a22B.1.617.20.000008
ORF1ab/nsp3378E378delGAA---22B.1.6210.000177
ORF1ab/nsp3378E378GgAagGa22B.1.6210.000177
ORF1ab/nsp3378E378GgAagGa22P.10.000032
ORF1ab/nsp3378E378IGAAATT12P.10.000016
ORF1ab/nsp3378E378IGAaATa12P.10.000016
ORF1ab/nsp3378E378delGAA---22P.1.120.000968
ORF1ab/nsp3378E378VgAagTa12P.1.150.000232
ORF1ab/nsp3378E378VgAAgTC12P.1.150.000232
ORF1ab/nsp3378E378AgAagCa22P.1.170.000324
ORF1ab/nsp3378E378VgAagTa12P.20.000187
ORF1ab/nsp3378E378VgAAgTC12P.20.000187
ORF1ab/nsp3378E378EgaAgaG110.055556
ORF1ab/nsp3378E378XGaaTaa11A0.000387
ORF1ab/nsp3378E378VgAagTa11A.2.50.000499
ORF1ab/nsp3378E378GgAagGa11A.2.50.000499
ORF1ab/nsp3378E378MGAAATG11All0
ORF1ab/nsp3378E378QGaaCaa11AY.1000.000046
ORF1ab/nsp3378E378AgAagCa11AY.1000.000046
ORF1ab/nsp3378E378VgAAgTC11AY.1010.00049
ORF1ab/nsp3378E378XGaaTaa11AY.1030.000006
ORF1ab/nsp3378E378DgaAgaC11AY.1030.000006
ORF1ab/nsp3378E378GgAagGa11AY.1030.000006
ORF1ab/nsp3378E378GgAagGa11AY.1070.000466
ORF1ab/nsp3378E378GgAagGa11AY.1180.000063
ORF1ab/nsp3378E378GgAagGa11AY.1190.000035
ORF1ab/nsp3378E378del1gAag-a11AY.1200.000037
ORF1ab/nsp3378E378XGaaTaa11AY.1210.000135
ORF1ab/nsp3378E378GgAagGa11AY.130.000161
ORF1ab/nsp3378E378EgaAgaG11AY.140.000088
ORF1ab/nsp3378E378KGaaAaa11AY.190.00114
ORF1ab/nsp3378E378DgaAgaT11AY.200.000039
ORF1ab/nsp3378E378VgAagTa11AY.230.00007
ORF1ab/nsp3378E378AgAagCa11AY.230.00007
ORF1ab/nsp3378E378LGAaTTa11AY.250.000006
ORF1ab/nsp3378E378FGAATTT11AY.250.000006
ORF1ab/nsp3378E378NGaAAaT11AY.250.000006
ORF1ab/nsp3378E378XGaaTaa11AY.250.000006
ORF1ab/nsp3378E378YGaATaT11AY.250.000006
ORF1ab/nsp3378E378GgAagGa11AY.260.000028
ORF1ab/nsp3378E378DgaAgaC11AY.260.000028
ORF1ab/nsp3378E378AgAagCa11AY.290.000016
ORF1ab/nsp3378E378delGAA---11AY.290.000016
ORF1ab/nsp3378E378VgAagTa11AY.30.00001
ORF1ab/nsp3378E378delGAA---11AY.30.00001
ORF1ab/nsp3378E378KGaaAaa11AY.30.00001
ORF1ab/nsp3378E378delGAA---11AY.330.000067
ORF1ab/nsp3378E378KGaaAaa11AY.330.000067
ORF1ab/nsp3378E378AgAagCa11AY.330.000067
ORF1ab/nsp3378E378VgAagTa11AY.340.000097
ORF1ab/nsp3378E378DgaAgaT11AY.340.000097
ORF1ab/nsp3378E378DgaAgaT11AY.380.000499
ORF1ab/nsp3378E378delGAA---11AY.390.000025
ORF1ab/nsp3378E378DgaAgaT11AY.390.000025
ORF1ab/nsp3378E378GgAagGa11AY.39.10.00004
ORF1ab/nsp3378E378XGaaTaa11AY.40.000002
ORF1ab/nsp3378E378del1gaAga-11AY.40.000002
ORF1ab/nsp3378E378AgAagCa11AY.4.20.000022
ORF1ab/nsp3378E378GgAagGa11AY.4.20.000022
ORF1ab/nsp3378E378XGaaTaa11AY.4.20.000022
ORF1ab/nsp3378E378VgAagTa11AY.4.50.000107
ORF1ab/nsp3378E378KGaaAaa11AY.420.00004
ORF1ab/nsp3378E378QGaaCaa11AY.430.000004
ORF1ab/nsp3378E378EgaAgaG11AY.430.000004
ORF1ab/nsp3378E378XGaaTaa11AY.430.000004
ORF1ab/nsp3378E378KGaaAaa11AY.430.000004
ORF1ab/nsp3378E378GgAagGa11AY.440.000006
ORF1ab/nsp3378E378DgaAgaC11AY.440.000006
ORF1ab/nsp3378E378delGAA---11AY.470.000031
ORF1ab/nsp3378E378DgaAgaC11AY.50.000021
ORF1ab/nsp3378E378KGaaAaa11AY.50.000021
ORF1ab/nsp3378E378delGAA---11AY.5.30.000337
ORF1ab/nsp3378E378XGaaTaa11AY.520.000814
ORF1ab/nsp3378E378KGaaAaa11AY.590.00053
ORF1ab/nsp3378E378AgAagCa11AY.640.000595
ORF1ab/nsp3378E378GgAagGa11AY.75.10.00018
ORF1ab/nsp3378E378IGAAATC11AY.850.000427
ORF1ab/nsp3378E378AgAAgCG11AY.850.000427
ORF1ab/nsp3378E378KGaaAaa11AY.90.000068
ORF1ab/nsp3378E378VgAagTa11AY.9.20.000037
ORF1ab/nsp3378E378DgaAgaT11AY.9.20.000037
ORF1ab/nsp3378E378delGAA---11AY.940.000443
ORF1ab/nsp3378E378GgAagGa11AY.99.20.000092
ORF1ab/nsp3378E378del1gAag-a11B0.000128
ORF1ab/nsp3378E378VgAagTa11B0.000128
ORF1ab/nsp3378E378DgaAgaC11B0.000128
ORF1ab/nsp3378E378XGaaTaa11B0.000128
ORF1ab/nsp3378E378EgaAgaG11B.10.000009
ORF1ab/nsp3378E378del1Gaa-aa11B.10.000009
ORF1ab/nsp3378E378NGaAAaC11B.10.000009
ORF1ab/nsp3378E378AgAagCa11B.10.000009
ORF1ab/nsp3378E378AgAagCa11B.1.10.000018
ORF1ab/nsp3378E378GgAagGa11B.1.10.000018
ORF1ab/nsp3378E378delGAA---11B.1.10.000018
ORF1ab/nsp3378E378KGaaAaa11B.1.1.10.000327
ORF1ab/nsp3378E378DgaAgaC11B.1.1.10.000327
ORF1ab/nsp3378E378AgAagCa11B.1.1.1170.009709
ORF1ab/nsp3378E378delGAA---11B.1.1.1920.002309
ORF1ab/nsp3378E378del1gAag-a11B.1.1.2980.000862
ORF1ab/nsp3378E378KGaaAaa11B.1.1.3110.000358
ORF1ab/nsp3378E378delGAA---11B.1.1.3150.008475
ORF1ab/nsp3378E378FGAATTC11B.1.1.3180.000302
ORF1ab/nsp3378E378delGAA---11B.1.1.330.000421
ORF1ab/nsp3378E378GgAagGa11B.1.1.3770.001381
ORF1ab/nsp3378E378VgAagTa11B.1.1.4190.007407
ORF1ab/nsp3378E378delGAA---11B.1.1.4340.000349
ORF1ab/nsp3378E378KGaaAaa11B.1.1.4340.000349
ORF1ab/nsp3378E378KGaaAaa11B.1.1.5190.00004
ORF1ab/nsp3378E378GgAagGa11B.1.1.630.000386
ORF1ab/nsp3378E378MGAAATG11B.1.1.70.000001
ORF1ab/nsp3378E378AgAagCa11B.1.1.700.000341
ORF1ab/nsp3378E378delGAA---11B.1.1400.018868
ORF1ab/nsp3378E378KGaaAaa11B.1.1460.004237
ORF1ab/nsp3378E378AgAagCa11B.1.1570.002985
ORF1ab/nsp3378E378EgaAgaG11B.1.1570.002985
ORF1ab/nsp3378E378delGAA---11B.1.1600.000031
ORF1ab/nsp3378E378AgAagCa11B.1.1770.000013
ORF1ab/nsp3378E378VgAagTa11B.1.1770.000013
ORF1ab/nsp3378E378KGaaAaa11B.1.1770.000013
ORF1ab/nsp3378E378KGaaAaa11B.1.177.160.000664
ORF1ab/nsp3378E378delGAA---11B.1.177.40.000211
ORF1ab/nsp3378E378VgAagTa11B.1.177.70.000165
ORF1ab/nsp3378E378GgAagGa11B.1.177.810.000189
ORF1ab/nsp3378E378KGaaAaa11B.1.177.810.000189
ORF1ab/nsp3378E378KGaaAaa11B.1.177.850.005435
ORF1ab/nsp3378E378EgaAgaG11B.1.177.860.000183
ORF1ab/nsp3378E378DgaAgaT11B.1.177.870.000728
ORF1ab/nsp3378E378del2gAAg--11B.1.20.000009
ORF1ab/nsp3378E378del1gAag-a11B.1.20.000009
ORF1ab/nsp3378E378delGAA---11B.1.2210.000071
ORF1ab/nsp3378E378delGAA---11B.1.258.170.000104
ORF1ab/nsp3378E378XGaaTaa11B.1.3010.005917
ORF1ab/nsp3378E378KGaaAaa11B.1.3130.006579
ORF1ab/nsp3378E378KGaaAaa11B.1.350.008475
ORF1ab/nsp3378E378EgaAgaG11B.1.3510.00003
ORF1ab/nsp3378E378delGAA---11B.1.3510.00003
ORF1ab/nsp3378E378delGAA---11B.1.351.20.000303
ORF1ab/nsp3378E378VgAagTa11B.1.351.20.000303
ORF1ab/nsp3378E378delGAA---11B.1.360.000146
ORF1ab/nsp3378E378delGAA---11B.1.36.290.000517
ORF1ab/nsp3378E378VgAagTa11B.1.36.80.001
ORF1ab/nsp3378E378GgAagGa11B.1.3750.00082
ORF1ab/nsp3378E378KGaaAaa11B.1.4000.000429
ORF1ab/nsp3378E378delGAA---11B.1.4090.000781
ORF1ab/nsp3378E378GgAagGa11B.1.4270.00005
ORF1ab/nsp3378E378EgaAgaG11B.1.4270.00005
ORF1ab/nsp3378E378GgAagGa11B.1.4280.00102
ORF1ab/nsp3378E378DgaAgaC11B.1.4530.003236
ORF1ab/nsp3378E378VgAagTa11B.1.5250.000113
ORF1ab/nsp3378E378EgaAgaG11B.1.5260.000024
ORF1ab/nsp3378E378FGAATTT11B.1.5760.000907
ORF1ab/nsp3378E378XGaaTaa11B.1.5760.000907
ORF1ab/nsp3378E378KGaaAaa11B.1.5760.000907
ORF1ab/nsp3378E378NGaAAaT11B.1.5760.000907
ORF1ab/nsp3378E378YGaATaT11B.1.5760.000907
ORF1ab/nsp3378E378LGAaTTa11B.1.5760.000907
ORF1ab/nsp3378E378EgaAgaG11B.1.5950.000261
ORF1ab/nsp3378E378delGAA---11B.1.5950.000261
ORF1ab/nsp3378E378del2GAA--N11B.1.5960.000087
ORF1ab/nsp3378E378GgAagGa11B.1.5960.000087
ORF1ab/nsp3378E378AgAagCa11B.1.617.20.000004
ORF1ab/nsp3378E378DgaAgaC11B.1.617.20.000004
ORF1ab/nsp3378E378KGaaAaa11B.1.6210.000089
ORF1ab/nsp3378E378XGaaTaa11B.1.6230.000536
ORF1ab/nsp3378E378KGaaAaa11B.390.002331
ORF1ab/nsp3378E378delGAA---11B.570.015152
ORF1ab/nsp3378E378XGaaTaa11B.60.00091
ORF1ab/nsp3378E378XGaaTaa11B.6.60.000889
ORF1ab/nsp3378E378KGaaAaa11C.370.000116
ORF1ab/nsp3378E378delGAA---11C.370.000116
ORF1ab/nsp3378E378EgaAgaG11C.40.01
ORF1ab/nsp3378E378DgaAgaT11D.20.000075
ORF1ab/nsp3378E378delGAA---11N.60.007092
ORF1ab/nsp3378E378FGAATTT11P.10.000016
ORF1ab/nsp3378E378NGaAAaT11P.10.000016
ORF1ab/nsp3378E378YGaATaT11P.10.000016
ORF1ab/nsp3378E378LGAaTTa11P.10.000016
ORF1ab/nsp3378E378delGAA---11P.10.000016
ORF1ab/nsp3378E378KGaaAaa11P.10.000016
ORF1ab/nsp3378E378DgaAgaC11P.10.000016
ORF1ab/nsp3378E378XGaaTaa11P.10.000016
ORF1ab/nsp3378E378EgaAgaG11P.1.140.000048
ORF1ab/nsp3378E378GgAagGa11P.1.150.000232
ORF1ab/nsp3378E378DgaAgaC11P.1.150.000232
ORF1ab/nsp3378E378DgaAgaC11P.20.000187
ORF1ab/nsp3378E378EgaAgaG11P.20.000187
ORF1ab/nsp3378E378delGAA---11Q.20.000613
ORF1ab/nsp3378E378GgAagGa11Q.30.000145
ORF1ab/nsp3378E378VgAagTa11Q.30.000145
ORF1ab/nsp3378E378VgAagTa11Q.80.000165
ORF1ab/nsp3378E378DgaAgaC11Q.80.000165
ORF1ab/nsp3378E378delGAA---11R.10.00009