CoV-GLUEGenomeCountriesLineagesMutationsInsertionsDeletionsUpdated:

CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF1ab/nsp3 : CodonNum = 371 & Codon = aTc

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF1ab/nsp3371S371IS1189InonsynaGcaTc122640.524593830-3832

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF1ab/nsp3371S371IaGcaTc64122All0.000012
ORF1ab/nsp3371S371IaGcaTc1567B.1.1.70.000013
ORF1ab/nsp3371S371IaGcaTc1111C.160.011665
ORF1ab/nsp3371S371IaGcaTc77B.1.617.20.000026
ORF1ab/nsp3371S371IaGcaTc66AY.40.000009
ORF1ab/nsp3371S371IaGcaTc44B.1.20.000035
ORF1ab/nsp3371S371IaGcaTc13AY.250.000006
ORF1ab/nsp3371S371IaGcaTc13P.10.000016
ORF1ab/nsp3371S371IaGcaTc22B.10.000018
ORF1ab/nsp3371S371IaGcaTc11AY.1030.000006
ORF1ab/nsp3371S371IaGcaTc11AY.1070.000466
ORF1ab/nsp3371S371IaGcaTc11AY.1080.001103
ORF1ab/nsp3371S371IaGcaTc11AY.1190.000035
ORF1ab/nsp3371S371IaGcaTc11AY.230.00007
ORF1ab/nsp3371S371IaGcaTc11AY.260.000028
ORF1ab/nsp3371S371IaGcaTc11AY.270.000065
ORF1ab/nsp3371S371IaGcaTc11AY.4.50.000107
ORF1ab/nsp3371S371IaGcaTc11AY.460.000104
ORF1ab/nsp3371S371IaGcaTc11AY.9.20.000037
ORF1ab/nsp3371S371IaGcaTc11B.1.1.10.000327
ORF1ab/nsp3371S371IaGcaTc11B.1.2430.00007
ORF1ab/nsp3371S371IaGcaTc11B.1.3380.008621
ORF1ab/nsp3371S371IaGcaTc11B.1.4700.001404
ORF1ab/nsp3371S371IaGcaTc11B.1.5260.000024
ORF1ab/nsp3371S371IaGcaTc11B.1.595.10.005848
ORF1ab/nsp3371S371IaGcaTc11P.1.150.000232

CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk

CoV-GLUE uses sequence data from GISAID. GISAID data provided via this web application is subject to GISAID's Terms and Conditions.