CoV-GLUEGenomeCountriesLineagesMutationsInsertionsDeletionsUpdated:

CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF1ab/nsp3 : CodonNum = 371

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF1ab/nsp3371S371SS1189SsynagCagT6166110.9918833830-3832
ORF1ab/nsp3371S371SS1189SsynAGCTCT61620.003246753830-3832
ORF1ab/nsp3371S371SS1189SsynAGCTCA61620.003246753830-3832
ORF1ab/nsp3371S371SS1189SsynAGCTCG61610.001623383830-3832
ORF1ab/nsp3371S371GS1189GnonsynAgcGgc4974870.9798793830-3832
ORF1ab/nsp3371S371GS1189GnonsynAgCGgT49750.01006043830-3832
ORF1ab/nsp3371S371GS1189GnonsynAgCGgA49750.01006043830-3832
ORF1ab/nsp3371S371NS1189NnonsynaGcaAc2322060.8879313830-3832
ORF1ab/nsp3371S371NS1189NnonsynaGCaAT232260.1120693830-3832
ORF1ab/nsp3371S371IS1189InonsynaGcaTc122640.524593830-3832
ORF1ab/nsp3371S371IS1189InonsynaGCaTT122300.2459023830-3832
ORF1ab/nsp3371S371IS1189InonsynaGCaTA122280.2295083830-3832
ORF1ab/nsp3371S371RS1189RnonsynagCagA100710.713830-3832
ORF1ab/nsp3371S371RS1189RnonsynAgcCgc100250.253830-3832
ORF1ab/nsp3371S371RS1189RnonsynagCagG10020.023830-3832
ORF1ab/nsp3371S371RS1189RnonsynAgCCgT10010.013830-3832
ORF1ab/nsp3371S371RS1189RnonsynAgCCgA10010.013830-3832
ORF1ab/nsp3371S371delS1189deldelAGC---808013830-3832
ORF1ab/nsp3371S371LS1189LnonsynAGCTTA66450.6818183830-3832
ORF1ab/nsp3371S371LS1189LnonsynAGCCTT6670.1060613830-3832
ORF1ab/nsp3371S371LS1189LnonsynAGCCTA6670.1060613830-3832
ORF1ab/nsp3371S371LS1189LnonsynAGCTTG6670.1060613830-3832
ORF1ab/nsp3371S371XS1189XnonsynAGCTAA54400.7407413830-3832
ORF1ab/nsp3371S371XS1189XnonsynAgCTgA5490.1666673830-3832
ORF1ab/nsp3371S371XS1189XnonsynAGCTAG5450.09259263830-3832
ORF1ab/nsp3371S371FS1189FnonsynAGCTTT47460.9787233830-3832
ORF1ab/nsp3371S371FS1189FnonsynAGcTTc4710.02127663830-3832
ORF1ab/nsp3371S371YS1189YnonsynAGCTAT46430.9347833830-3832
ORF1ab/nsp3371S371YS1189YnonsynAGcTAc4630.06521743830-3832
ORF1ab/nsp3371S371VS1189VnonsynAGCGTA28130.4642863830-3832
ORF1ab/nsp3371S371VS1189VnonsynAGCGTT28120.4285713830-3832
ORF1ab/nsp3371S371VS1189VnonsynAGCGTG2830.1071433830-3832
ORF1ab/nsp3371S371KS1189KnonsynaGCaAA27230.8518523830-3832
ORF1ab/nsp3371S371KS1189KnonsynaGCaAG2740.1481483830-3832
ORF1ab/nsp3371S371ES1189EnonsynAGCGAA15120.83830-3832
ORF1ab/nsp3371S371ES1189EnonsynAGCGAG1530.23830-3832
ORF1ab/nsp3371S371CS1189CnonsynAgCTgT1390.6923083830-3832
ORF1ab/nsp3371S371CS1189CnonsynAgcTgc1340.3076923830-3832
ORF1ab/nsp3371S371DS1189DnonsynAGCGAT12110.9166673830-3832
ORF1ab/nsp3371S371TS1189TnonsynaGcaCc12100.8333333830-3832
ORF1ab/nsp3371S371DS1189DnonsynAGcGAc1210.08333333830-3832
ORF1ab/nsp3371S371TS1189TnonsynaGCaCT1210.08333333830-3832
ORF1ab/nsp3371S371TS1189TnonsynaGCaCA1210.08333333830-3832
ORF1ab/nsp3371S371QS1189QnonsynAGCCAA6613830-3832
ORF1ab/nsp3371S371HS1189HnonsynAGCCAT6613830-3832
ORF1ab/nsp3371S371MS1189MnonsynaGCaTG4413830-3832
ORF1ab/nsp3371S371AS1189AnonsynAGCGCA420.53830-3832
ORF1ab/nsp3371S371AS1189AnonsynAGCGCT420.53830-3832
ORF1ab/nsp3371S371del1S1189del1delagCag-2213830-3832
ORF1ab/nsp3371S371del2S1189del2delAGC--N210.53830-3832
ORF1ab/nsp3371S371del2S1189del2delAGCG--210.53830-3832
ORF1ab/nsp3371S371WS1189WnonsynAgCTgG1113830-3832

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF1ab/nsp3371S371SagCagT611616All0.000117
ORF1ab/nsp3371S371SAGCTCA2616All0
ORF1ab/nsp3371S371SAGCTCT2616All0
ORF1ab/nsp3371S371SAGCTCG1616All0
ORF1ab/nsp3371S371GAgcGgc487497All0.000093
ORF1ab/nsp3371S371GAgCGgT5497All0.000001
ORF1ab/nsp3371S371GAgCGgA5497All0.000001
ORF1ab/nsp3371S371NaGcaAc206232All0.000039
ORF1ab/nsp3371S371NaGCaAT26232All0.000005
ORF1ab/nsp3371S371GAgcGgc215215B.1.6180.866935
ORF1ab/nsp3371S371SagCagT125125B.1.20.001101
ORF1ab/nsp3371S371IaGcaTc64122All0.000012
ORF1ab/nsp3371S371IaGCaTT30122All0.000006
ORF1ab/nsp3371S371IaGCaTA28122All0.000005
ORF1ab/nsp3371S371SagCagT107112B.1.1.70.000096
ORF1ab/nsp3371S371SAGCTCA2112B.1.1.70.000002
ORF1ab/nsp3371S371SAGCTCT2112B.1.1.70.000002
ORF1ab/nsp3371S371SAGCTCG1112B.1.1.70.000001
ORF1ab/nsp3371S371GAgcGgc111111AY.40.000173
ORF1ab/nsp3371S371NaGcaAc103103B.1.2150.990385
ORF1ab/nsp3371S371RagCagA71100All0.000014
ORF1ab/nsp3371S371RAgcCgc25100All0.000005
ORF1ab/nsp3371S371RagCagG2100All0
ORF1ab/nsp3371S371RAgCCgA1100All0
ORF1ab/nsp3371S371RAgCCgT1100All0
ORF1ab/nsp3371S371delAGC---8080All0.000015
ORF1ab/nsp3371S371IaGCaTT2767B.1.1.70.000024
ORF1ab/nsp3371S371IaGCaTA2567B.1.1.70.000022
ORF1ab/nsp3371S371IaGcaTc1567B.1.1.70.000013
ORF1ab/nsp3371S371LAGCTTA4566All0.000009
ORF1ab/nsp3371S371LAGCCTA766All0.000001
ORF1ab/nsp3371S371LAGCTTG766All0.000001
ORF1ab/nsp3371S371LAGCCTT766All0.000001
ORF1ab/nsp3371S371SagCagT6363AY.40.000098
ORF1ab/nsp3371S371LAGCTTA4160B.1.1.70.000037
ORF1ab/nsp3371S371LAGCTTG760B.1.1.70.000006
ORF1ab/nsp3371S371LAGCCTA660B.1.1.70.000005
ORF1ab/nsp3371S371LAGCCTT660B.1.1.70.000005
ORF1ab/nsp3371S371XAGCTAA4054All0.000008
ORF1ab/nsp3371S371XAgCTgA954All0.000002
ORF1ab/nsp3371S371XAGCTAG554All0.000001
ORF1ab/nsp3371S371XAGCTAA3649B.1.1.70.000032
ORF1ab/nsp3371S371XAgCTgA849B.1.1.70.000007
ORF1ab/nsp3371S371XAGCTAG549B.1.1.70.000004
ORF1ab/nsp3371S371FAGCTTT4647All0.000009
ORF1ab/nsp3371S371FAGcTTc147All0
ORF1ab/nsp3371S371SagCagT4747AY.39.10.001862
ORF1ab/nsp3371S371YAGCTAT4346All0.000008
ORF1ab/nsp3371S371YAGcTAc346All0.000001
ORF1ab/nsp3371S371FAGCTTT4243B.1.1.70.000038
ORF1ab/nsp3371S371FAGcTTc143B.1.1.70.000001
ORF1ab/nsp3371S371NaGCaAT2241B.1.1.70.00002
ORF1ab/nsp3371S371NaGcaAc1941B.1.1.70.000017
ORF1ab/nsp3371S371YAGCTAT3840B.1.1.70.000034
ORF1ab/nsp3371S371YAGcTAc240B.1.1.70.000002
ORF1ab/nsp3371S371GAgcGgc3636AY.4.20.000781
ORF1ab/nsp3371S371GAgcGgc2636B.1.1.70.000023
ORF1ab/nsp3371S371GAgCGgA536B.1.1.70.000004
ORF1ab/nsp3371S371GAgCGgT536B.1.1.70.000004
ORF1ab/nsp3371S371SagCagT3333AY.440.000201
ORF1ab/nsp3371S371GAgcGgc2929B.1.20.000255
ORF1ab/nsp3371S371VAGCGTA1328All0.000002
ORF1ab/nsp3371S371VAGCGTT1228All0.000002
ORF1ab/nsp3371S371VAGCGTG328All0.000001
ORF1ab/nsp3371S371KaGCaAA2327All0.000004
ORF1ab/nsp3371S371KaGCaAG427All0.000001
ORF1ab/nsp3371S371VAGCGTA1226B.1.1.70.000011
ORF1ab/nsp3371S371VAGCGTT1126B.1.1.70.00001
ORF1ab/nsp3371S371VAGCGTG326B.1.1.70.000003
ORF1ab/nsp3371S371KaGCaAA2023B.1.1.70.000018
ORF1ab/nsp3371S371KaGCaAG323B.1.1.70.000003
ORF1ab/nsp3371S371RagCagA1919B.1.110.30.013649
ORF1ab/nsp3371S371RagCagA718B.1.1.70.000006
ORF1ab/nsp3371S371RAgcCgc718B.1.1.70.000006
ORF1ab/nsp3371S371RagCagG218B.1.1.70.000002
ORF1ab/nsp3371S371RAgCCgA118B.1.1.70.000001
ORF1ab/nsp3371S371RAgCCgT118B.1.1.70.000001
ORF1ab/nsp3371S371GAgcGgc1616AY.250.000096
ORF1ab/nsp3371S371SagCagT1616B.1.617.20.00006
ORF1ab/nsp3371S371EAGCGAA1215All0.000002
ORF1ab/nsp3371S371EAGCGAG315All0.000001
ORF1ab/nsp3371S371SagCagT1515AY.250.00009
ORF1ab/nsp3371S371GAgcGgc1515B.1.5820.00736
ORF1ab/nsp3371S371SagCagT1414AY.370.004425
ORF1ab/nsp3371S371SagCagT1414B.1.1.2220.002856
ORF1ab/nsp3371S371EAGCGAA1114B.1.1.70.00001
ORF1ab/nsp3371S371EAGCGAG314B.1.1.70.000003
ORF1ab/nsp3371S371SagCagT1414B.1.214.30.1
ORF1ab/nsp3371S371CAgCTgT913All0.000002
ORF1ab/nsp3371S371CAgcTgc413All0.000001
ORF1ab/nsp3371S371delAGC---1313B.1.1.70.000012
ORF1ab/nsp3371S371DAGCGAT1112All0.000002
ORF1ab/nsp3371S371TaGcaCc1012All0.000002
ORF1ab/nsp3371S371TaGCaCT112All0
ORF1ab/nsp3371S371TaGCaCA112All0
ORF1ab/nsp3371S371DAGcGAc112All0
ORF1ab/nsp3371S371delAGC---1212AY.50.000248
ORF1ab/nsp3371S371SagCagT1212B.10.00011
ORF1ab/nsp3371S371DAGCGAT1011B.1.1.70.000009
ORF1ab/nsp3371S371DAGcGAc111B.1.1.70.000001
ORF1ab/nsp3371S371IaGcaTc1111C.160.011665
ORF1ab/nsp3371S371NaGcaAc1010B.1.10.000181
ORF1ab/nsp3371S371RagCagA1010B.1.1.3680.030864
ORF1ab/nsp3371S371NaGcaAc1010B.1.20.000088
ORF1ab/nsp3371S371SagCagT99B.1.10.000163
ORF1ab/nsp3371S371NaGcaAc78AY.250.000042
ORF1ab/nsp3371S371NaGCaAT18AY.250.000006
ORF1ab/nsp3371S371SagCagT88AY.980.000632
ORF1ab/nsp3371S371SagCagT88B.1.1.2320.014519
ORF1ab/nsp3371S371CAgCTgT78B.1.1.70.000006
ORF1ab/nsp3371S371CAgcTgc18B.1.1.70.000001
ORF1ab/nsp3371S371SagCagT88B.1.1600.00025
ORF1ab/nsp3371S371NaGcaAc77AY.1030.000043
ORF1ab/nsp3371S371NaGcaAc77B.1.5750.002124
ORF1ab/nsp3371S371IaGcaTc77B.1.617.20.000026
ORF1ab/nsp3371S371HAGCCAT66All0.000001
ORF1ab/nsp3371S371QAGCCAA66All0.000001
ORF1ab/nsp3371S371SagCagT66AY.1030.000037
ORF1ab/nsp3371S371RagCagA66AY.39.10.000238
ORF1ab/nsp3371S371NaGcaAc66AY.40.000009
ORF1ab/nsp3371S371IaGcaTc66AY.40.000009
ORF1ab/nsp3371S371RagCagA56B.1.617.20.000019
ORF1ab/nsp3371S371RAgcCgc16B.1.617.20.000004
ORF1ab/nsp3371S371QAGCCAA55B.1.1.70.000004
ORF1ab/nsp3371S371HAGCCAT55B.1.1.70.000004
ORF1ab/nsp3371S371delAGC---55B.1.20.000044
ORF1ab/nsp3371S371SagCagT55N.90.029762
ORF1ab/nsp3371S371MaGCaTG44All0.000001
ORF1ab/nsp3371S371AAGCGCT24All0
ORF1ab/nsp3371S371AAGCGCA24All0
ORF1ab/nsp3371S371NaGcaAc44AY.470.000124
ORF1ab/nsp3371S371NaGcaAc44B.10.000037
ORF1ab/nsp3371S371delAGC---44B.10.000037
ORF1ab/nsp3371S371RAgcCgc34B.10.000027
ORF1ab/nsp3371S371RagCagA14B.10.000009
ORF1ab/nsp3371S371MaGCaTG44B.1.1.70.000004
ORF1ab/nsp3371S371AAGCGCT24B.1.1.70.000002
ORF1ab/nsp3371S371AAGCGCA24B.1.1.70.000002
ORF1ab/nsp3371S371IaGcaTc44B.1.20.000035
ORF1ab/nsp3371S371GAgcGgc44B.1.258.170.000416
ORF1ab/nsp3371S371RagCagA44B.1.3510.000119
ORF1ab/nsp3371S371GAgcGgc44B.1.5960.000349
ORF1ab/nsp3371S371delAGC---44B.1.5960.000349
ORF1ab/nsp3371S371GAgcGgc44B.1.617.20.000015
ORF1ab/nsp3371S371SagCagT44C.36.30.002269
ORF1ab/nsp3371S371RagCagA33AY.1050.001929
ORF1ab/nsp3371S371IaGcaTc13AY.250.000006
ORF1ab/nsp3371S371IaGCaTT13AY.250.000006
ORF1ab/nsp3371S371IaGCaTA13AY.250.000006
ORF1ab/nsp3371S371SagCagT33AY.260.000085
ORF1ab/nsp3371S371SagCagT33AY.30.00003
ORF1ab/nsp3371S371delAGC---33AY.40.000005
ORF1ab/nsp3371S371TaGcaCc33AY.40.000005
ORF1ab/nsp3371S371SagCagT33AY.430.000013
ORF1ab/nsp3371S371RagCagA23AY.440.000012
ORF1ab/nsp3371S371RAgcCgc13AY.440.000006
ORF1ab/nsp3371S371SagCagT33AY.470.000093
ORF1ab/nsp3371S371SagCagT33AY.540.000286
ORF1ab/nsp3371S371GAgcGgc33B.10.000027
ORF1ab/nsp3371S371LAGCCTA13B.10.000009
ORF1ab/nsp3371S371LAGCCTT13B.10.000009
ORF1ab/nsp3371S371LAGCTTA13B.10.000009
ORF1ab/nsp3371S371NaGcaAc33B.1.1.3110.001074
ORF1ab/nsp3371S371SagCagT33B.1.1770.00004
ORF1ab/nsp3371S371GAgcGgc33B.1.2580.0002
ORF1ab/nsp3371S371SagCagT33B.1.3510.000089
ORF1ab/nsp3371S371SagCagT33B.1.360.000438
ORF1ab/nsp3371S371RAgcCgc33B.1.36.80.003
ORF1ab/nsp3371S371SagCagT33B.1.4270.000151
ORF1ab/nsp3371S371delAGC---33B.1.5260.000071
ORF1ab/nsp3371S371delAGC---33B.1.5680.003333
ORF1ab/nsp3371S371SagCagT33P.10.000047
ORF1ab/nsp3371S371IaGCaTA13P.10.000016
ORF1ab/nsp3371S371IaGCaTT13P.10.000016
ORF1ab/nsp3371S371IaGcaTc13P.10.000016
ORF1ab/nsp3371S371NaGCaAT120.055556
ORF1ab/nsp3371S371CAgCTgT120.055556
ORF1ab/nsp3371S371YAGCTAT120.055556
ORF1ab/nsp3371S371NaGcaAc120.055556
ORF1ab/nsp3371S371CAgcTgc120.055556
ORF1ab/nsp3371S371YAGcTAc120.055556
ORF1ab/nsp3371S371SagCagT22A.10.000564
ORF1ab/nsp3371S371del1agCag-22All0
ORF1ab/nsp3371S371del2AGCG--12All0
ORF1ab/nsp3371S371del2AGC--N12All0
ORF1ab/nsp3371S371GAgcGgc22AY.1030.000012
ORF1ab/nsp3371S371SagCagT22AY.1180.000125
ORF1ab/nsp3371S371SagCagT22AY.1200.000074
ORF1ab/nsp3371S371delAGC---22AY.16.10.00094
ORF1ab/nsp3371S371NaGcaAc22AY.200.000078
ORF1ab/nsp3371S371SagCagT22AY.200.000078
ORF1ab/nsp3371S371delAGC---22AY.250.000012
ORF1ab/nsp3371S371NaGcaAc22AY.270.000129
ORF1ab/nsp3371S371SagCagT22AY.390.000049
ORF1ab/nsp3371S371CAgcTgc22AY.40.000003
ORF1ab/nsp3371S371RagCagA22AY.40.000003
ORF1ab/nsp3371S371NaGcaAc22AY.450.000243
ORF1ab/nsp3371S371SagCagT22AY.46.60.000144
ORF1ab/nsp3371S371SagCagT22AY.60.000082
ORF1ab/nsp3371S371NaGcaAc22AY.750.000112
ORF1ab/nsp3371S371SagCagT22AY.98.10.000097
ORF1ab/nsp3371S371NaGcaAc22B0.000256
ORF1ab/nsp3371S371IaGcaTc22B.10.000018
ORF1ab/nsp3371S371VAGCGTA12B.10.000009
ORF1ab/nsp3371S371VAGCGTT12B.10.000009
ORF1ab/nsp3371S371RagCagA12B.1.10.000018
ORF1ab/nsp3371S371RAgcCgc12B.1.10.000018
ORF1ab/nsp3371S371TaGCaCT12B.1.1.70.000001
ORF1ab/nsp3371S371TaGCaCA12B.1.1.70.000001
ORF1ab/nsp3371S371del2AGCG--12B.1.20.000009
ORF1ab/nsp3371S371del2AGC--N12B.1.20.000009
ORF1ab/nsp3371S371SagCagT22B.1.2210.000142
ORF1ab/nsp3371S371NaGcaAc22B.1.360.000292
ORF1ab/nsp3371S371SagCagT22B.1.36.180.00084
ORF1ab/nsp3371S371delAGC---22B.1.4290.000047
ORF1ab/nsp3371S371SagCagT22B.1.4290.000047
ORF1ab/nsp3371S371SagCagT22B.1.438.10.000215
ORF1ab/nsp3371S371SagCagT22B.1.466.20.000782
ORF1ab/nsp3371S371SagCagT22B.1.5260.000047
ORF1ab/nsp3371S371SagCagT22B.1.5650.001621
ORF1ab/nsp3371S371IaGCaTA12B.1.5760.000907
ORF1ab/nsp3371S371IaGCaTT12B.1.5760.000907
ORF1ab/nsp3371S371delAGC---22B.1.6210.000177
ORF1ab/nsp3371S371NaGCaAT12P.10.000016
ORF1ab/nsp3371S371NaGcaAc12P.10.000016
ORF1ab/nsp3371S371XAGCTAA12P.10.000016
ORF1ab/nsp3371S371XAgCTgA12P.10.000016
ORF1ab/nsp3371S371delAGC---22P.1.120.000968
ORF1ab/nsp3371S371SagCagT110.055556
ORF1ab/nsp3371S371GAgcGgc11A.2.50.000499
ORF1ab/nsp3371S371SagCagT11A.2.50.000499
ORF1ab/nsp3371S371SagCagT11AD.20.000219
ORF1ab/nsp3371S371WAgCTgG11All0
ORF1ab/nsp3371S371SagCagT11AY.1000.000046
ORF1ab/nsp3371S371GAgcGgc11AY.1000.000046
ORF1ab/nsp3371S371RagCagA11AY.1020.000027
ORF1ab/nsp3371S371GAgcGgc11AY.1020.000027
ORF1ab/nsp3371S371SagCagT11AY.1020.000027
ORF1ab/nsp3371S371IaGcaTc11AY.1030.000006
ORF1ab/nsp3371S371IaGcaTc11AY.1070.000466
ORF1ab/nsp3371S371IaGcaTc11AY.1080.001103
ORF1ab/nsp3371S371NaGcaAc11AY.1130.000142
ORF1ab/nsp3371S371GAgcGgc11AY.1180.000063
ORF1ab/nsp3371S371RAgcCgc11AY.1190.000035
ORF1ab/nsp3371S371IaGcaTc11AY.1190.000035
ORF1ab/nsp3371S371SagCagT11AY.130.000161
ORF1ab/nsp3371S371SagCagT11AY.140.000088
ORF1ab/nsp3371S371TaGcaCc11AY.200.000039
ORF1ab/nsp3371S371delAGC---11AY.230.00007
ORF1ab/nsp3371S371SagCagT11AY.230.00007
ORF1ab/nsp3371S371IaGcaTc11AY.230.00007
ORF1ab/nsp3371S371XAGCTAA11AY.250.000006
ORF1ab/nsp3371S371LAGCTTA11AY.250.000006
ORF1ab/nsp3371S371KaGCaAA11AY.250.000006
ORF1ab/nsp3371S371YAGCTAT11AY.250.000006
ORF1ab/nsp3371S371FAGCTTT11AY.250.000006
ORF1ab/nsp3371S371RagCagA11AY.250.000006
ORF1ab/nsp3371S371del1agCag-11AY.250.000006
ORF1ab/nsp3371S371IaGcaTc11AY.260.000028
ORF1ab/nsp3371S371RagCagA11AY.260.000028
ORF1ab/nsp3371S371IaGcaTc11AY.270.000065
ORF1ab/nsp3371S371GAgcGgc11AY.290.000016
ORF1ab/nsp3371S371NaGcaAc11AY.290.000016
ORF1ab/nsp3371S371delAGC---11AY.30.00001
ORF1ab/nsp3371S371GAgcGgc11AY.3.10.000085
ORF1ab/nsp3371S371SagCagT11AY.3.10.000085
ORF1ab/nsp3371S371RAgcCgc11AY.300.000396
ORF1ab/nsp3371S371RAgcCgc11AY.390.000025
ORF1ab/nsp3371S371delAGC---11AY.390.000025
ORF1ab/nsp3371S371TaGcaCc11AY.4.20.000022
ORF1ab/nsp3371S371SagCagT11AY.4.40.000409
ORF1ab/nsp3371S371IaGcaTc11AY.4.50.000107
ORF1ab/nsp3371S371delAGC---11AY.430.000004
ORF1ab/nsp3371S371RAgcCgc11AY.430.000004
ORF1ab/nsp3371S371GAgcGgc11AY.430.000004
ORF1ab/nsp3371S371NaGcaAc11AY.430.000004
ORF1ab/nsp3371S371GAgcGgc11AY.440.000006
ORF1ab/nsp3371S371NaGcaAc11AY.440.000006
ORF1ab/nsp3371S371SagCagT11AY.450.000122
ORF1ab/nsp3371S371SagCagT11AY.460.000104
ORF1ab/nsp3371S371IaGcaTc11AY.460.000104
ORF1ab/nsp3371S371SagCagT11AY.46.40.000165
ORF1ab/nsp3371S371RagCagA11AY.50.000021
ORF1ab/nsp3371S371SagCagT11AY.510.000909
ORF1ab/nsp3371S371SagCagT11AY.560.001605
ORF1ab/nsp3371S371NaGcaAc11AY.60.000041
ORF1ab/nsp3371S371SagCagT11AY.610.000105
ORF1ab/nsp3371S371TaGcaCc11AY.620.000436
ORF1ab/nsp3371S371RAgcCgc11AY.630.000387
ORF1ab/nsp3371S371NaGcaAc11AY.680.000274
ORF1ab/nsp3371S371SagCagT11AY.70.000196
ORF1ab/nsp3371S371RagCagA11AY.750.000056
ORF1ab/nsp3371S371delAGC---11AY.75.10.00018
ORF1ab/nsp3371S371SagCagT11AY.880.000884
ORF1ab/nsp3371S371RagCagA11AY.9.10.000084
ORF1ab/nsp3371S371IaGcaTc11AY.9.20.000037
ORF1ab/nsp3371S371RagCagA11AY.99.20.000092
ORF1ab/nsp3371S371TaGcaCc11B.10.000009
ORF1ab/nsp3371S371XAGCTAA11B.10.000009
ORF1ab/nsp3371S371DAGCGAT11B.10.000009
ORF1ab/nsp3371S371YAGCTAT11B.10.000009
ORF1ab/nsp3371S371HAGCCAT11B.10.000009
ORF1ab/nsp3371S371QAGCCAA11B.10.000009
ORF1ab/nsp3371S371EAGCGAA11B.10.000009
ORF1ab/nsp3371S371FAGCTTT11B.10.000009
ORF1ab/nsp3371S371delAGC---11B.1.10.000018
ORF1ab/nsp3371S371IaGcaTc11B.1.1.10.000327
ORF1ab/nsp3371S371delAGC---11B.1.1.1920.002309
ORF1ab/nsp3371S371RAgcCgc11B.1.1.2210.010101
ORF1ab/nsp3371S371SagCagT11B.1.1.2980.000862
ORF1ab/nsp3371S371SagCagT11B.1.1.3010.001179
ORF1ab/nsp3371S371SagCagT11B.1.1.3290.003846
ORF1ab/nsp3371S371delAGC---11B.1.1.330.000421
ORF1ab/nsp3371S371SagCagT11B.1.1.3690.000446
ORF1ab/nsp3371S371SagCagT11B.1.1.5160.066667
ORF1ab/nsp3371S371GAgcGgc11B.1.1.5180.006329
ORF1ab/nsp3371S371NaGcaAc11B.1.1.5190.00004
ORF1ab/nsp3371S371SagCagT11B.1.1.5190.00004
ORF1ab/nsp3371S371WAgCTgG11B.1.1.70.000001
ORF1ab/nsp3371S371delAGC---11B.1.1400.018868
ORF1ab/nsp3371S371delAGC---11B.1.1600.000031
ORF1ab/nsp3371S371GAgcGgc11B.1.1600.000031
ORF1ab/nsp3371S371SagCagT11B.1.160.200.008929
ORF1ab/nsp3371S371GAgcGgc11B.1.1770.000013
ORF1ab/nsp3371S371delAGC---11B.1.1770.000013
ORF1ab/nsp3371S371RagCagA11B.1.177.230.003236
ORF1ab/nsp3371S371delAGC---11B.1.177.40.000211
ORF1ab/nsp3371S371delAGC---11B.1.177.620.001192
ORF1ab/nsp3371S371SagCagT11B.1.177.70.000165
ORF1ab/nsp3371S371SagCagT11B.1.177.810.000189
ORF1ab/nsp3371S371RAgcCgc11B.1.1840.058824
ORF1ab/nsp3371S371del1agCag-11B.1.20.000009
ORF1ab/nsp3371S371TaGcaCc11B.1.20.000009
ORF1ab/nsp3371S371RagCagA11B.1.2210.000071
ORF1ab/nsp3371S371GAgcGgc11B.1.2430.00007
ORF1ab/nsp3371S371IaGcaTc11B.1.2430.00007
ORF1ab/nsp3371S371SagCagT11B.1.258.170.000104
ORF1ab/nsp3371S371GAgcGgc11B.1.258.30.001675
ORF1ab/nsp3371S371RAgcCgc11B.1.3110.000275
ORF1ab/nsp3371S371IaGcaTc11B.1.3380.008621
ORF1ab/nsp3371S371delAGC---11B.1.3510.00003
ORF1ab/nsp3371S371SagCagT11B.1.351.20.000303
ORF1ab/nsp3371S371SagCagT11B.1.351.50.0006
ORF1ab/nsp3371S371KaGCaAG11B.1.360.000146
ORF1ab/nsp3371S371SagCagT11B.1.36.290.000517
ORF1ab/nsp3371S371TaGcaCc11B.1.36.390.002217
ORF1ab/nsp3371S371GAgcGgc11B.1.3910.001127
ORF1ab/nsp3371S371NaGcaAc11B.1.3970.004854
ORF1ab/nsp3371S371SagCagT11B.1.4000.000429
ORF1ab/nsp3371S371delAGC---11B.1.4090.000781
ORF1ab/nsp3371S371IaGcaTc11B.1.4700.001404
ORF1ab/nsp3371S371delAGC---11B.1.5240.001406
ORF1ab/nsp3371S371RAgcCgc11B.1.5250.000113
ORF1ab/nsp3371S371SagCagT11B.1.5250.000113
ORF1ab/nsp3371S371delAGC---11B.1.5250.000113
ORF1ab/nsp3371S371IaGcaTc11B.1.5260.000024
ORF1ab/nsp3371S371GAgcGgc11B.1.5260.000024
ORF1ab/nsp3371S371SagCagT11B.1.5400.009709
ORF1ab/nsp3371S371GAgcGgc11B.1.5510.00129
ORF1ab/nsp3371S371SagCagT11B.1.575.10.002439
ORF1ab/nsp3371S371NaGCaAT11B.1.5760.000907
ORF1ab/nsp3371S371KaGCaAA11B.1.5760.000907
ORF1ab/nsp3371S371FAGCTTT11B.1.5760.000907
ORF1ab/nsp3371S371LAGCTTA11B.1.5760.000907
ORF1ab/nsp3371S371XAGCTAA11B.1.5760.000907
ORF1ab/nsp3371S371YAGCTAT11B.1.5760.000907
ORF1ab/nsp3371S371delAGC---11B.1.5950.000261
ORF1ab/nsp3371S371IaGcaTc11B.1.595.10.005848
ORF1ab/nsp3371S371GAgcGgc11B.1.6090.000479
ORF1ab/nsp3371S371SagCagT11B.1.617.10.000129
ORF1ab/nsp3371S371GAgcGgc11B.1.617.10.000129
ORF1ab/nsp3371S371delAGC---11B.1.617.20.000004
ORF1ab/nsp3371S371NaGcaAc11B.1.617.20.000004
ORF1ab/nsp3371S371GAgcGgc11B.1.6210.000089
ORF1ab/nsp3371S371NaGcaAc11B.1.6210.000089
ORF1ab/nsp3371S371SagCagT11B.1.6370.000073
ORF1ab/nsp3371S371SagCagT11B.1.9.40.006135
ORF1ab/nsp3371S371delAGC---11B.570.015152
ORF1ab/nsp3371S371TaGcaCc11B.580.010204
ORF1ab/nsp3371S371SagCagT11B.60.00091
ORF1ab/nsp3371S371SagCagT11C.350.000774
ORF1ab/nsp3371S371RagCagA11C.370.000116
ORF1ab/nsp3371S371delAGC---11N.60.007092
ORF1ab/nsp3371S371RagCagA11P.10.000016
ORF1ab/nsp3371S371delAGC---11P.10.000016
ORF1ab/nsp3371S371FAGCTTT11P.10.000016
ORF1ab/nsp3371S371LAGCTTA11P.10.000016
ORF1ab/nsp3371S371CAgCTgT11P.10.000016
ORF1ab/nsp3371S371YAGCTAT11P.10.000016
ORF1ab/nsp3371S371KaGCaAA11P.10.000016
ORF1ab/nsp3371S371NaGcaAc11P.1.120.000484
ORF1ab/nsp3371S371SagCagT11P.1.140.000048
ORF1ab/nsp3371S371IaGcaTc11P.1.150.000232
ORF1ab/nsp3371S371SagCagT11P.1.150.000232
ORF1ab/nsp3371S371SagCagT11Q.80.000165
ORF1ab/nsp3371S371delAGC---11R.10.00009
ORF1ab/nsp3371S371NaGcaAc11R.10.00009

CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk

CoV-GLUE uses sequence data from GISAID. GISAID data provided via this web application is subject to GISAID's Terms and Conditions.