CoV-GLUEGenomeCountriesLineagesMutationsInsertionsDeletionsUpdated:

CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF1ab/nsp3 : CodonNum = 370

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF1ab/nsp3370S370LS1188LnonsyntCatTa1198881198700.999853827-3829
ORF1ab/nsp3370S370LS1188LnonsyntCAtTG119888140.0001167763827-3829
ORF1ab/nsp3370S370LS1188LnonsynTCaCTa11988820.00001668223827-3829
ORF1ab/nsp3370S370LS1188LnonsynTCACTT11988820.00001668223827-3829
ORF1ab/nsp3370S370SS1188SsyntcAtcG2721430.5257353827-3829
ORF1ab/nsp3370S370SS1188SsyntcAtcC272850.31253827-3829
ORF1ab/nsp3370S370SS1188SsyntcAtcT272330.1213243827-3829
ORF1ab/nsp3370S370SS1188SsynTCAAGT272110.04044123827-3829
ORF1ab/nsp3370S370PS1188PnonsynTcaCca1761750.9943183827-3829
ORF1ab/nsp3370S370PS1188PnonsynTcACcT17610.005681823827-3829
ORF1ab/nsp3370S370IS1188InonsynTCAATT80430.53753827-3829
ORF1ab/nsp3370S370IS1188InonsynTCaATa80350.43753827-3829
ORF1ab/nsp3370S370IS1188InonsynTCAATC8020.0253827-3829
ORF1ab/nsp3370S370delS1188deldelTCA---707013827-3829
ORF1ab/nsp3370S370AS1188AnonsynTcaGca686813827-3829
ORF1ab/nsp3370S370XS1188XnonsyntCatAa57400.7017543827-3829
ORF1ab/nsp3370S370XS1188XnonsyntCatGa57100.1754393827-3829
ORF1ab/nsp3370S370XS1188XnonsyntCAtAG5770.1228073827-3829
ORF1ab/nsp3370S370FS1188FnonsyntCAtTT55500.9090913827-3829
ORF1ab/nsp3370S370FS1188FnonsyntCAtTC5550.09090913827-3829
ORF1ab/nsp3370S370YS1188YnonsyntCAtAT39370.9487183827-3829
ORF1ab/nsp3370S370YS1188YnonsyntCAtAC3920.05128213827-3829
ORF1ab/nsp3370S370KS1188KnonsynTCaAAa38320.8421053827-3829
ORF1ab/nsp3370S370KS1188KnonsynTCAAAG3860.1578953827-3829
ORF1ab/nsp3370S370NS1188NnonsynTCAAAT37350.9459463827-3829
ORF1ab/nsp3370S370NS1188NnonsynTCAAAC3720.05405413827-3829
ORF1ab/nsp3370S370del1S1188del1deltCat-a24190.7916673827-3829
ORF1ab/nsp3370S370del1S1188del1deltcAtc-2440.1666673827-3829
ORF1ab/nsp3370S370del1S1188del1deltCAtT-2410.04166673827-3829
ORF1ab/nsp3370S370CS1188CnonsyntCAtGT15130.8666673827-3829
ORF1ab/nsp3370S370CS1188CnonsyntCAtGC1520.1333333827-3829
ORF1ab/nsp3370S370TS1188TnonsynTcaAca13120.9230773827-3829
ORF1ab/nsp3370S370RS1188RnonsynTCaAGa1380.6153853827-3829
ORF1ab/nsp3370S370RS1188RnonsynTCAAGG1350.3846153827-3829
ORF1ab/nsp3370S370TS1188TnonsynTcAAcT1310.07692313827-3829
ORF1ab/nsp3370S370MS1188MnonsynTCAATG9913827-3829
ORF1ab/nsp3370S370VS1188VnonsynTCAGTT730.4285713827-3829
ORF1ab/nsp3370S370VS1188VnonsynTCAGTG720.2857143827-3829
ORF1ab/nsp3370S370VS1188VnonsynTCAGTC720.2857143827-3829
ORF1ab/nsp3370S370del2S1188del2deltCAt--650.8333333827-3829
ORF1ab/nsp3370S370del2S1188del2delTCa--a610.1666673827-3829
ORF1ab/nsp3370S370WS1188WnonsyntCAtGG5513827-3829
ORF1ab/nsp3370S370GS1188GnonsynTCAGGT210.53827-3829
ORF1ab/nsp3370S370GS1188GnonsynTCAGGC210.53827-3829
ORF1ab/nsp3370S370QS1188QnonsynTCaCAa1113827-3829
ORF1ab/nsp3370S370ES1188EnonsynTCAGAG1113827-3829
ORF1ab/nsp3370S370HS1188HnonsynTCACAT1113827-3829
ORF1ab/nsp3370S370DS1188DnonsynTCAGAT1113827-3829

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF1ab/nsp3370S370LtCatTa119870119888All0.022927
ORF1ab/nsp3370S370LtCAtTG14119888All0.000003
ORF1ab/nsp3370S370LTCaCTa2119888All0
ORF1ab/nsp3370S370LTCACTT2119888All0
ORF1ab/nsp3370S370LtCatTa6213162132P.10.978811
ORF1ab/nsp3370S370LtCAtTG162132P.10.000016
ORF1ab/nsp3370S370LtCatTa2086220862P.1.140.997228
ORF1ab/nsp3370S370LtCatTa61316131P.1.170.99175
ORF1ab/nsp3370S370LtCatTa42284228P.1.150.982342
ORF1ab/nsp3370S370LtCatTa36783678P.1.100.991108
ORF1ab/nsp3370S370LtCatTa30633063P.1.70.977969
ORF1ab/nsp3370S370LtCatTa29702970P.1.10.943456
ORF1ab/nsp3370S370LtCatTa26192619P.1.160.979798
ORF1ab/nsp3370S370LtCatTa19141914P.1.120.926428
ORF1ab/nsp3370S370LtCatTa13701384B.1.1.70.001226
ORF1ab/nsp3370S370LtCAtTG101384B.1.1.70.000009
ORF1ab/nsp3370S370LTCaCTa21384B.1.1.70.000002
ORF1ab/nsp3370S370LTCACTT21384B.1.1.70.000002
ORF1ab/nsp3370S370LtCatTa11111111P.1.17.10.972003
ORF1ab/nsp3370S370LtCatTa10811081P.1.130.971249
ORF1ab/nsp3370S370LtCatTa10701070AY.40.001665
ORF1ab/nsp3370S370LtCatTa10231023P.1.40.999023
ORF1ab/nsp3370S370LtCatTa854854P.1.20.987283
ORF1ab/nsp3370S370LtCatTa674674AY.700.140534
ORF1ab/nsp3370S370LtCatTa514514P.1.61
ORF1ab/nsp3370S370LtCatTa383383B.1.617.20.001442
ORF1ab/nsp3370S370StcAtcG143272All0.000027
ORF1ab/nsp3370S370StcAtcC85272All0.000016
ORF1ab/nsp3370S370StcAtcT33272All0.000006
ORF1ab/nsp3370S370STCAAGT11272All0.000002
ORF1ab/nsp3370S370LtCatTa272272B.1.20.002395
ORF1ab/nsp3370S370LtCatTa220220B.1.1.700.075034
ORF1ab/nsp3370S370LtCatTa208208P.1.80.995215
ORF1ab/nsp3370S370LtCatTa205205P.1.90.985577
ORF1ab/nsp3370S370LtCatTa185185AY.1200.006878
ORF1ab/nsp3370S370LtCatTa183183B.10.001676
ORF1ab/nsp3370S370LtCatTa177177B.1.1.2220.036108
ORF1ab/nsp3370S370PTcaCca175176All0.000033
ORF1ab/nsp3370S370PTcACcT1176All0
ORF1ab/nsp3370S370LtCatTa144144AY.250.000866
ORF1ab/nsp3370S370LtCatTa130130AY.430.000576
ORF1ab/nsp3370S370LtCatTa119119AY.30.001184
ORF1ab/nsp3370S370LtCatTa111111B.1.177.820.052983
ORF1ab/nsp3370S370LtCatTa9898B.1.10.001778
ORF1ab/nsp3370S370LtCatTa9898B.1.177.650.065203
ORF1ab/nsp3370S370LtCatTa9898P.1.111
ORF1ab/nsp3370S370LtCatTa9292AY.440.00056
ORF1ab/nsp3370S370LtCatTa8686B.1.5260.002021
ORF1ab/nsp3370S370LtCatTa8383P.1.10.10.674797
ORF1ab/nsp3370S370ITCAATT4380All0.000008
ORF1ab/nsp3370S370ITCaATa3580All0.000007
ORF1ab/nsp3370S370ITCAATC280All0
ORF1ab/nsp3370S370ITCAATT3974B.1.1.70.000035
ORF1ab/nsp3370S370ITCaATa3374B.1.1.70.00003
ORF1ab/nsp3370S370ITCAATC274B.1.1.70.000002
ORF1ab/nsp3370S370delTCA---7070All0.000013
ORF1ab/nsp3370S370StcAtcC6669B.10.000605
ORF1ab/nsp3370S370StcAtcG269B.10.000018
ORF1ab/nsp3370S370STCAAGT169B.10.000009
ORF1ab/nsp3370S370ATcaGca6868All0.000013
ORF1ab/nsp3370S370PTcaCca6465B.1.1.70.000057
ORF1ab/nsp3370S370PTcACcT165B.1.1.70.000001
ORF1ab/nsp3370S370LtCatTa6363AY.260.001784
ORF1ab/nsp3370S370LtCatTa5959AY.1180.003696
ORF1ab/nsp3370S370XtCatAa4057All0.000008
ORF1ab/nsp3370S370XtCatGa1057All0.000002
ORF1ab/nsp3370S370XtCAtAG757All0.000001
ORF1ab/nsp3370S370FtCAtTT5055All0.00001
ORF1ab/nsp3370S370FtCAtTC555All0.000001
ORF1ab/nsp3370S370LtCatTa5151AY.1030.000317
ORF1ab/nsp3370S370FtCAtTT4650B.1.1.70.000041
ORF1ab/nsp3370S370FtCAtTC450B.1.1.70.000004
ORF1ab/nsp3370S370LtCatTa4949B.1.1770.000645
ORF1ab/nsp3370S370XtCatAa3148B.1.1.70.000028
ORF1ab/nsp3370S370XtCatGa1048B.1.1.70.000009
ORF1ab/nsp3370S370XtCAtAG748B.1.1.70.000006
ORF1ab/nsp3370S370LtCatTa4646AY.1190.001624
ORF1ab/nsp3370S370LtCatTa4646B.1.1.5190.001827
ORF1ab/nsp3370S370StcAtcG2646B.1.1.70.000023
ORF1ab/nsp3370S370STCAAGT946B.1.1.70.000008
ORF1ab/nsp3370S370StcAtcT846B.1.1.70.000007
ORF1ab/nsp3370S370StcAtcC346B.1.1.70.000003
ORF1ab/nsp3370S370LtCatTa4545C.370.005223
ORF1ab/nsp3370S370LtCatTa4444B.1.1280.027954
ORF1ab/nsp3370S370LtCatTa4444B.1.4290.001035
ORF1ab/nsp3370S370LtCatTa4143AY.1000.001886
ORF1ab/nsp3370S370LtCAtTG243AY.1000.000092
ORF1ab/nsp3370S370LtCatTa4242AY.340.004073
ORF1ab/nsp3370S370ATcaGca4242B.1.20.00037
ORF1ab/nsp3370S370LtCatTa4040AY.98.10.001937
ORF1ab/nsp3370S370YtCAtAT3739All0.000007
ORF1ab/nsp3370S370YtCAtAC239All0
ORF1ab/nsp3370S370KTCaAAa3238All0.000006
ORF1ab/nsp3370S370KTCAAAG638All0.000001
ORF1ab/nsp3370S370LtCatTa3838B.1.177.560.025367
ORF1ab/nsp3370S370NTCAAAT3537All0.000007
ORF1ab/nsp3370S370NTCAAAC237All0
ORF1ab/nsp3370S370YtCAtAT3537B.1.1.70.000031
ORF1ab/nsp3370S370YtCAtAC237B.1.1.70.000002
ORF1ab/nsp3370S370KTCaAAa3036B.1.1.70.000027
ORF1ab/nsp3370S370KTCAAAG636B.1.1.70.000005
ORF1ab/nsp3370S370NTCAAAT3335B.1.1.70.00003
ORF1ab/nsp3370S370NTCAAAC235B.1.1.70.000002
ORF1ab/nsp3370S370LtCatTa3333B.1.3510.000981
ORF1ab/nsp3370S370LtCatTa3131B.1.2400.006682
ORF1ab/nsp3370S370LtCatTa3030B.1.2580.001996
ORF1ab/nsp3370S370LtCatTa2929P.1.31
ORF1ab/nsp3370S370PTcaCca2626B.1.20.000229
ORF1ab/nsp3370S370PTcaCca2525AY.30.000249
ORF1ab/nsp3370S370del1tCat-a1924All0.000004
ORF1ab/nsp3370S370del1tcAtc-424All0.000001
ORF1ab/nsp3370S370del1tCAtT-124All0
ORF1ab/nsp3370S370LtCatTa2424P.1.10.21
ORF1ab/nsp3370S370LtCatTa2323AY.1130.003275
ORF1ab/nsp3370S370StcAtcG2323B.1.1.5190.000913
ORF1ab/nsp3370S370LtCatTa2323B.1.5170.009821
ORF1ab/nsp3370S370LtCatTa2121B.1.177.810.003976
ORF1ab/nsp3370S370LtCatTa2020AY.1020.00053
ORF1ab/nsp3370S370LtCatTa2020AY.4.20.000434
ORF1ab/nsp3370S370LtCatTa2020AY.7.10.002254
ORF1ab/nsp3370S370LtCatTa1919R.10.00171
ORF1ab/nsp3370S370StcAtcG1118AY.40.000017
ORF1ab/nsp3370S370StcAtcT718AY.40.000011
ORF1ab/nsp3370S370LtCatTa1818B.1.5770.012371
ORF1ab/nsp3370S370LtCatTa1717AY.10.006727
ORF1ab/nsp3370S370LtCatTa1717AY.390.00042
ORF1ab/nsp3370S370LtCatTa1616AY.750.000896
ORF1ab/nsp3370S370LtCatTa1616B.1.4260.016145
ORF1ab/nsp3370S370CtCAtGT1315All0.000002
ORF1ab/nsp3370S370CtCAtGC215All0
ORF1ab/nsp3370S370LtCatTa1515B.1.1.280.004669
ORF1ab/nsp3370S370LtCatTa1414AY.200.000544
ORF1ab/nsp3370S370LtCatTa1414P.20.002613
ORF1ab/nsp3370S370TTcaAca1213All0.000002
ORF1ab/nsp3370S370RTCaAGa813All0.000002
ORF1ab/nsp3370S370RTCAAGG513All0.000001
ORF1ab/nsp3370S370TTcAAcT113All0
ORF1ab/nsp3370S370LtCatTa1313AY.300.005144
ORF1ab/nsp3370S370CtCAtGT1113B.1.1.70.00001
ORF1ab/nsp3370S370CtCAtGC213B.1.1.70.000002
ORF1ab/nsp3370S370LtCatTa1313B.1.4270.000656
ORF1ab/nsp3370S370LtCatTa1313B.1.6210.001151
ORF1ab/nsp3370S370LtCatTa1313P.1.51
ORF1ab/nsp3370S370LtCatTa1212AY.460.001249
ORF1ab/nsp3370S370LtCatTa1212AY.50.000248
ORF1ab/nsp3370S370delTCA---1212AY.50.000248
ORF1ab/nsp3370S370delTCA---1212B.1.1.70.000011
ORF1ab/nsp3370S370RTCaAGa812B.1.1.70.000007
ORF1ab/nsp3370S370RTCAAGG412B.1.1.70.000004
ORF1ab/nsp3370S370LtCatTa1212B.1.177.210.000918
ORF1ab/nsp3370S370LtCatTa1212B.1.177.720.040678
ORF1ab/nsp3370S370LtCatTa1111AY.230.000767
ORF1ab/nsp3370S370LtCatTa1111B.1.360.001605
ORF1ab/nsp3370S370PTcaCca1111B.1.617.20.000041
ORF1ab/nsp3370S370LtCatTa1010A.2.50.00499
ORF1ab/nsp3370S370StcAtcG910AY.440.000055
ORF1ab/nsp3370S370StcAtcC110AY.440.000006
ORF1ab/nsp3370S370LtCatTa1010AY.46.40.001645
ORF1ab/nsp3370S370PTcaCca1010B.1.10.000181
ORF1ab/nsp3370S370LtCatTa1010B.1.5250.001132
ORF1ab/nsp3370S370LtCatTa1010B.1.5960.000871
ORF1ab/nsp3370S370LtCatTa1010N.10.169492
ORF1ab/nsp3370S370MTCAATG99All0.000002
ORF1ab/nsp3370S370StcAtcT59AY.250.00003
ORF1ab/nsp3370S370StcAtcG49AY.250.000024
ORF1ab/nsp3370S370LtCatTa99B.1.1.5280.043269
ORF1ab/nsp3370S370LtCatTa99B.1.1600.000281
ORF1ab/nsp3370S370StcAtcC99B.1.177.730.005096
ORF1ab/nsp3370S370PTcaCca99B.1.2930.1125
ORF1ab/nsp3370S370LtCatTa99C.360.008197
ORF1ab/nsp3370S370del1tCat-a99P.10.000142
ORF1ab/nsp3370S370LtCatTa88AY.1100.000902
ORF1ab/nsp3370S370LtCatTa88AY.290.000126
ORF1ab/nsp3370S370LtCatTa88AY.610.000838
ORF1ab/nsp3370S370LtCatTa88AY.99.20.000737
ORF1ab/nsp3370S370ATcaGca88B.1.10.000145
ORF1ab/nsp3370S370LtCatTa88B.1.1.3060.003507
ORF1ab/nsp3370S370MTCAATG88B.1.1.70.000007
ORF1ab/nsp3370S370LtCatTa88B.1.3690.002282
ORF1ab/nsp3370S370VTCAGTT37All0.000001
ORF1ab/nsp3370S370VTCAGTG27All0
ORF1ab/nsp3370S370VTCAGTC27All0
ORF1ab/nsp3370S370LtCatTa77AY.39.10.000277
ORF1ab/nsp3370S370StcAtcT47AY.430.000018
ORF1ab/nsp3370S370StcAtcG27AY.430.000009
ORF1ab/nsp3370S370StcAtcC17AY.430.000004
ORF1ab/nsp3370S370LtCatTa77AY.480.003256
ORF1ab/nsp3370S370LtCatTa77AZ.20.005747
ORF1ab/nsp3370S370PTcaCca77B.10.000064
ORF1ab/nsp3370S370ATcaGca77B.10.000064
ORF1ab/nsp3370S370VTCAGTT37B.1.1.70.000003
ORF1ab/nsp3370S370VTCAGTC27B.1.1.70.000002
ORF1ab/nsp3370S370VTCAGTG27B.1.1.70.000002
ORF1ab/nsp3370S370del2tCAt--56All0.000001
ORF1ab/nsp3370S370del2TCa--a16All0
ORF1ab/nsp3370S370LtCatTa66AY.116.10.001869
ORF1ab/nsp3370S370LtCatTa66AY.920.001724
ORF1ab/nsp3370S370LtCatTa66B0.000767
ORF1ab/nsp3370S370StcAtcG66B.1.10.000109
ORF1ab/nsp3370S370LtCatTa66B.1.1.3480.004777
ORF1ab/nsp3370S370LtCatTa66B.1.1700.025862
ORF1ab/nsp3370S370LtCatTa66B.1.177.120.00091
ORF1ab/nsp3370S370LtCatTa66B.1.3990.011605
ORF1ab/nsp3370S370LtCatTa66B.1.5950.001566
ORF1ab/nsp3370S370LtCatTa66N.40.025532
ORF1ab/nsp3370S370del1tCat-a66P.1.140.000287
ORF1ab/nsp3370S370WtCAtGG55All0.000001
ORF1ab/nsp3370S370LtCatTa55AY.1050.003215
ORF1ab/nsp3370S370LtCatTa55AY.1060.001674
ORF1ab/nsp3370S370LtCatTa55AY.20.001781
ORF1ab/nsp3370S370LtCatTa55AY.240.002155
ORF1ab/nsp3370S370PTcaCca55AY.390.000124
ORF1ab/nsp3370S370LtCatTa55AY.46.60.000361
ORF1ab/nsp3370S370LtCatTa55AY.470.000156
ORF1ab/nsp3370S370LtCatTa55AY.70.00098
ORF1ab/nsp3370S370LtCatTa55AY.7.20.002796
ORF1ab/nsp3370S370LtCatTa55AY.9.20.000184
ORF1ab/nsp3370S370LtCatTa55B.1.1.1610.017668
ORF1ab/nsp3370S370LtCatTa55B.1.1.5070.043478
ORF1ab/nsp3370S370LtCatTa55B.1.1.630.001929
ORF1ab/nsp3370S370delTCA---55B.1.20.000044
ORF1ab/nsp3370S370StcAtcG35B.1.20.000026
ORF1ab/nsp3370S370StcAtcT15B.1.20.000009
ORF1ab/nsp3370S370StcAtcC15B.1.20.000009
ORF1ab/nsp3370S370StcAtcG35B.1.617.20.000011
ORF1ab/nsp3370S370StcAtcT25B.1.617.20.000008
ORF1ab/nsp3370S370LtCatTa55C.37.10.013089
ORF1ab/nsp3370S370StcAtcG55P.20.000933
ORF1ab/nsp3370S370LtCatTa55Q.10.000632
ORF1ab/nsp3370S370StcAtcG44AY.1030.000025
ORF1ab/nsp3370S370TTcaAca44AY.1170.000338
ORF1ab/nsp3370S370LtCatTa44AY.420.000161
ORF1ab/nsp3370S370StcAtcG44AY.50.000083
ORF1ab/nsp3370S370LtCatTa44AY.590.002119
ORF1ab/nsp3370S370LtCatTa44AY.840.00175
ORF1ab/nsp3370S370delTCA---44B.10.000037
ORF1ab/nsp3370S370LtCatTa44B.1.1.2310.012384
ORF1ab/nsp3370S370LtCatTa44B.1.1.3170.001647
ORF1ab/nsp3370S370LtCatTa44B.1.1.3260.007042
ORF1ab/nsp3370S370WtCAtGG44B.1.1.70.000004
ORF1ab/nsp3370S370LtCatTa44B.1.2430.000278
ORF1ab/nsp3370S370LtCatTa44B.1.36.170.001976
ORF1ab/nsp3370S370LtCatTa44B.1.36.180.001681
ORF1ab/nsp3370S370LtCatTa44B.1.438.10.000429
ORF1ab/nsp3370S370LtCatTa44B.1.466.20.001565
ORF1ab/nsp3370S370delTCA---44B.1.5960.000349
ORF1ab/nsp3370S370LtCatTa44B.1.617.10.000516
ORF1ab/nsp3370S370LtCatTa44B.400.001457
ORF1ab/nsp3370S370StcAtcG44C.370.000464
ORF1ab/nsp3370S370LtCatTa33A0.001161
ORF1ab/nsp3370S370TTcaAca33AY.1020.00008
ORF1ab/nsp3370S370LtCatTa33AY.1160.00086
ORF1ab/nsp3370S370LtCatTa33AY.3.10.000256
ORF1ab/nsp3370S370LtCatTa33AY.450.000365
ORF1ab/nsp3370S370ATcaGca33AY.470.000093
ORF1ab/nsp3370S370LtCatTa33AY.650.001599
ORF1ab/nsp3370S370LtCatTa33B.1.1.2200.005576
ORF1ab/nsp3370S370StcAtcG33B.1.1.280.000934
ORF1ab/nsp3370S370LtCatTa33B.1.1.370.000579
ORF1ab/nsp3370S370LtCatTa33B.1.177.70.000495
ORF1ab/nsp3370S370LtCatTa33B.1.2650.003812
ORF1ab/nsp3370S370LtCatTa33B.1.36.360.001806
ORF1ab/nsp3370S370LtCatTa33B.1.4090.002344
ORF1ab/nsp3370S370LtCatTa33B.1.4330.009585
ORF1ab/nsp3370S370delTCA---33B.1.5260.000071
ORF1ab/nsp3370S370LtCatTa33B.1.5820.001472
ORF1ab/nsp3370S370StcAtcG33B.1.6370.000219
ORF1ab/nsp3370S370LtCatTa33C.170.166667
ORF1ab/nsp3370S370LtCatTa33Q.80.000495
ORF1ab/nsp3370S370GTCAGGT12All0
ORF1ab/nsp3370S370GTCAGGC12All0
ORF1ab/nsp3370S370LtCatTa22AY.1140.000462
ORF1ab/nsp3370S370LtCatTa22AY.130.000322
ORF1ab/nsp3370S370LtCatTa22AY.16.10.00094
ORF1ab/nsp3370S370delTCA---22AY.16.10.00094
ORF1ab/nsp3370S370ITCAATT12AY.250.000006
ORF1ab/nsp3370S370ITCaATa12AY.250.000006
ORF1ab/nsp3370S370LtCatTa22AY.320.001065
ORF1ab/nsp3370S370LtCatTa22AY.330.000134
ORF1ab/nsp3370S370LtCatTa22AY.360.000296
ORF1ab/nsp3370S370del2tCAt--12AY.40.000002
ORF1ab/nsp3370S370del2TCa--a12AY.40.000002
ORF1ab/nsp3370S370StcAtcG22AY.4.2.10.000298
ORF1ab/nsp3370S370LtCatTa22AY.4.2.10.000298
ORF1ab/nsp3370S370LtCatTa22AY.400.001929
ORF1ab/nsp3370S370LtCatTa22AY.5.30.000675
ORF1ab/nsp3370S370LtCatTa22AY.570.001312
ORF1ab/nsp3370S370StcAtcG22AY.610.00021
ORF1ab/nsp3370S370LtCatTa22AY.740.000231
ORF1ab/nsp3370S370LtCatTa22AY.9.10.000167
ORF1ab/nsp3370S370LtCatTa22AY.910.001461
ORF1ab/nsp3370S370LtCatTa22AY.980.000158
ORF1ab/nsp3370S370XtCatAa22B.10.000018
ORF1ab/nsp3370S370LtCatTa22B.1.1.250.001137
ORF1ab/nsp3370S370StcAtcG22B.1.1.250.001137
ORF1ab/nsp3370S370LtCatTa22B.1.1.270.011299
ORF1ab/nsp3370S370LtCatTa22B.1.1.3110.000716
ORF1ab/nsp3370S370LtCatTa22B.1.1.3180.000604
ORF1ab/nsp3370S370LtCatTa22B.1.1.3720.001377
ORF1ab/nsp3370S370LtCatTa22B.1.1.4090.005666
ORF1ab/nsp3370S370LtCatTa22B.1.1.560.035714
ORF1ab/nsp3370S370del2tCAt--22B.1.1.70.000002
ORF1ab/nsp3370S370ATcaGca22B.1.1.70.000002
ORF1ab/nsp3370S370del1tcAtc-22B.1.1.70.000002
ORF1ab/nsp3370S370GTCAGGT12B.1.1.70.000001
ORF1ab/nsp3370S370GTCAGGC12B.1.1.70.000001
ORF1ab/nsp3370S370TTcAAcT12B.1.1.70.000001
ORF1ab/nsp3370S370TTcaAca12B.1.1.70.000001
ORF1ab/nsp3370S370LtCatTa22B.1.110.30.001437
ORF1ab/nsp3370S370LtCatTa22B.1.177.730.001133
ORF1ab/nsp3370S370del2tCAt--22B.1.20.000018
ORF1ab/nsp3370S370LtCatTa22B.1.2210.000142
ORF1ab/nsp3370S370LtCatTa22B.1.2340.000264
ORF1ab/nsp3370S370StcAtcG22B.1.2340.000264
ORF1ab/nsp3370S370PTcaCca22B.1.2430.000139
ORF1ab/nsp3370S370LtCatTa22B.1.258.170.000208
ORF1ab/nsp3370S370LtCatTa22B.1.3240.00321
ORF1ab/nsp3370S370StcAtcG22B.1.36.80.002
ORF1ab/nsp3370S370LtCatTa22B.1.3750.001639
ORF1ab/nsp3370S370delTCA---22B.1.4290.000047
ORF1ab/nsp3370S370LtCatTa22B.1.4990.002101
ORF1ab/nsp3370S370LtCatTa22B.1.5240.002813
ORF1ab/nsp3370S370StcAtcG22B.1.5260.000047
ORF1ab/nsp3370S370LtCatTa22B.1.5330.019231
ORF1ab/nsp3370S370delTCA---22B.1.6210.000177
ORF1ab/nsp3370S370LtCatTa22B.1.621.10.001012
ORF1ab/nsp3370S370LtCatTa22C.40.02
ORF1ab/nsp3370S370LtCatTa22D.20.00015
ORF1ab/nsp3370S370ITCaATa12P.10.000016
ORF1ab/nsp3370S370ITCAATT12P.10.000016
ORF1ab/nsp3370S370delTCA---22P.1.120.000968
ORF1ab/nsp3370S370LtCatTa22Q.20.001227
ORF1ab/nsp3370S370PTcaCca22Q.30.00029
ORF1ab/nsp3370S370LtCatTa22Z.10.00578
ORF1ab/nsp3370S370FtCAtTC110.055556
ORF1ab/nsp3370S370LtCatTa110.055556
ORF1ab/nsp3370S370StcAtcC110.055556
ORF1ab/nsp3370S370XtCatAa11A0.000387
ORF1ab/nsp3370S370ATcaGca11A0.000387
ORF1ab/nsp3370S370LtCatTa11A.270.001656
ORF1ab/nsp3370S370LtCatTa11AE.30.032258
ORF1ab/nsp3370S370QTCaCAa11All0
ORF1ab/nsp3370S370HTCACAT11All0
ORF1ab/nsp3370S370ETCAGAG11All0
ORF1ab/nsp3370S370DTCAGAT11All0
ORF1ab/nsp3370S370StcAtcG11AY.1020.000027
ORF1ab/nsp3370S370PTcaCca11AY.1030.000006
ORF1ab/nsp3370S370LtCatTa11AY.1080.001103
ORF1ab/nsp3370S370StcAtcT11AY.1110.000183
ORF1ab/nsp3370S370LtCatTa11AY.1170.000085
ORF1ab/nsp3370S370XtCatAa11AY.1190.000035
ORF1ab/nsp3370S370LtCatTa11AY.120.20.001285
ORF1ab/nsp3370S370LtCatTa11AY.1210.000135
ORF1ab/nsp3370S370LtCatTa11AY.140.000088
ORF1ab/nsp3370S370LtCatTa11AY.160.00038
ORF1ab/nsp3370S370StcAtcC11AY.200.000039
ORF1ab/nsp3370S370delTCA---11AY.230.00007
ORF1ab/nsp3370S370XtCatAa11AY.250.000006
ORF1ab/nsp3370S370NTCAAAT11AY.250.000006
ORF1ab/nsp3370S370delTCA---11AY.250.000006
ORF1ab/nsp3370S370YtCAtAT11AY.250.000006
ORF1ab/nsp3370S370FtCAtTT11AY.250.000006
ORF1ab/nsp3370S370KTCaAAa11AY.250.000006
ORF1ab/nsp3370S370LtCatTa11AY.270.000065
ORF1ab/nsp3370S370LtCatTa11AY.29.10.000221
ORF1ab/nsp3370S370delTCA---11AY.30.00001
ORF1ab/nsp3370S370StcAtcG11AY.30.00001
ORF1ab/nsp3370S370StcAtcG11AY.340.000097
ORF1ab/nsp3370S370LtCatTa11AY.34.10.00051
ORF1ab/nsp3370S370LtCatTa11AY.370.000316
ORF1ab/nsp3370S370StcAtcT11AY.390.000025
ORF1ab/nsp3370S370delTCA---11AY.390.000025
ORF1ab/nsp3370S370del1tCAtT-11AY.40.000002
ORF1ab/nsp3370S370TTcaAca11AY.40.000002
ORF1ab/nsp3370S370delTCA---11AY.40.000002
ORF1ab/nsp3370S370PTcaCca11AY.40.000002
ORF1ab/nsp3370S370ATcaGca11AY.40.000002
ORF1ab/nsp3370S370StcAtcG11AY.4.30.000842
ORF1ab/nsp3370S370LtCatTa11AY.4.30.000842
ORF1ab/nsp3370S370LtCatTa11AY.4.50.000107
ORF1ab/nsp3370S370PTcaCca11AY.420.00004
ORF1ab/nsp3370S370delTCA---11AY.430.000004
ORF1ab/nsp3370S370PTcaCca11AY.430.000004
ORF1ab/nsp3370S370PTcaCca11AY.46.10.001027
ORF1ab/nsp3370S370PTcaCca11AY.46.20.000635
ORF1ab/nsp3370S370LtCatTa11AY.46.50.000198
ORF1ab/nsp3370S370XtCatAa11AY.520.000814
ORF1ab/nsp3370S370LtCatTa11AY.530.000288
ORF1ab/nsp3370S370LtCatTa11AY.60.000041
ORF1ab/nsp3370S370LtCatTa11AY.620.000436
ORF1ab/nsp3370S370LtCatTa11AY.630.000387
ORF1ab/nsp3370S370LtCatTa11AY.640.000595
ORF1ab/nsp3370S370StcAtcG11AY.680.000274
ORF1ab/nsp3370S370StcAtcG11AY.7.10.000113
ORF1ab/nsp3370S370delTCA---11AY.75.10.00018
ORF1ab/nsp3370S370LtCatTa11AY.75.10.00018
ORF1ab/nsp3370S370PTcaCca11AY.780.001541
ORF1ab/nsp3370S370LtCatTa11AY.780.001541
ORF1ab/nsp3370S370LtCatTa11AY.880.000884
ORF1ab/nsp3370S370LtCatTa11AY.90.000068
ORF1ab/nsp3370S370StcAtcG11AY.910.00073
ORF1ab/nsp3370S370LtCatTa11AY.930.000273
ORF1ab/nsp3370S370StcAtcG11AY.980.000079
ORF1ab/nsp3370S370StcAtcC11AY.98.10.000048
ORF1ab/nsp3370S370LtCatTa11AY.990.001049
ORF1ab/nsp3370S370LtCatTa11AZ.30.00152
ORF1ab/nsp3370S370StcAtcC11B0.000128
ORF1ab/nsp3370S370TTcaAca11B.10.000009
ORF1ab/nsp3370S370del1tcAtc-11B.10.000009
ORF1ab/nsp3370S370CtCAtGT11B.10.000009
ORF1ab/nsp3370S370ITCAATT11B.10.000009
ORF1ab/nsp3370S370FtCAtTT11B.10.000009
ORF1ab/nsp3370S370delTCA---11B.1.10.000018
ORF1ab/nsp3370S370TTcaAca11B.1.10.000018
ORF1ab/nsp3370S370LtCatTa11B.1.1.1010.01
ORF1ab/nsp3370S370LtCatTa11B.1.1.1530.001095
ORF1ab/nsp3370S370ATcaGca11B.1.1.1570.000913
ORF1ab/nsp3370S370LtCatTa11B.1.1.1630.007634
ORF1ab/nsp3370S370delTCA---11B.1.1.1920.002309
ORF1ab/nsp3370S370LtCatTa11B.1.1.2140.000055
ORF1ab/nsp3370S370LtCatTa11B.1.1.2160.00089
ORF1ab/nsp3370S370StcAtcG11B.1.1.2200.001859
ORF1ab/nsp3370S370LtCatTa11B.1.1.2360.006897
ORF1ab/nsp3370S370LtCatTa11B.1.1.2370.005405
ORF1ab/nsp3370S370LtCatTa11B.1.1.2690.001353
ORF1ab/nsp3370S370LtCatTa11B.1.1.2740.005051
ORF1ab/nsp3370S370PTcaCca11B.1.1.280.000311
ORF1ab/nsp3370S370LtCatTa11B.1.1.2940.001266
ORF1ab/nsp3370S370LtCatTa11B.1.1.3290.003846
ORF1ab/nsp3370S370delTCA---11B.1.1.330.000421
ORF1ab/nsp3370S370LtCatTa11B.1.1.3690.000446
ORF1ab/nsp3370S370LtCatTa11B.1.1.3740.002375
ORF1ab/nsp3370S370LtCatTa11B.1.1.390.00051
ORF1ab/nsp3370S370LtCatTa11B.1.1.4070.041667
ORF1ab/nsp3370S370PTcaCca11B.1.1.4340.000349
ORF1ab/nsp3370S370LtCatTa11B.1.1.540.003021
ORF1ab/nsp3370S370HTCACAT11B.1.1.70.000001
ORF1ab/nsp3370S370QTCaCAa11B.1.1.70.000001
ORF1ab/nsp3370S370DTCAGAT11B.1.1.70.000001
ORF1ab/nsp3370S370ETCAGAG11B.1.1.70.000001
ORF1ab/nsp3370S370LtCatTa11B.1.1.990.02381
ORF1ab/nsp3370S370StcAtcG11B.1.110.30.000718
ORF1ab/nsp3370S370LtCatTa11B.1.1110.001175
ORF1ab/nsp3370S370StcAtcG11B.1.1390.000733
ORF1ab/nsp3370S370LtCatTa11B.1.1390.000733
ORF1ab/nsp3370S370delTCA---11B.1.1400.018868
ORF1ab/nsp3370S370LtCatTa11B.1.1470.000756
ORF1ab/nsp3370S370TTcaAca11B.1.1600.000031
ORF1ab/nsp3370S370delTCA---11B.1.1600.000031
ORF1ab/nsp3370S370LtCatTa11B.1.160.300.002976
ORF1ab/nsp3370S370PTcaCca11B.1.1770.000013
ORF1ab/nsp3370S370delTCA---11B.1.1770.000013
ORF1ab/nsp3370S370StcAtcG11B.1.177.230.003236
ORF1ab/nsp3370S370StcAtcT11B.1.177.40.000211
ORF1ab/nsp3370S370LtCatTa11B.1.177.40.000211
ORF1ab/nsp3370S370LtCatTa11B.1.177.410.0025
ORF1ab/nsp3370S370LtCatTa11B.1.177.510.004566
ORF1ab/nsp3370S370LtCatTa11B.1.177.550.002331
ORF1ab/nsp3370S370LtCatTa11B.1.177.570.000281
ORF1ab/nsp3370S370LtCatTa11B.1.177.600.000218
ORF1ab/nsp3370S370delTCA---11B.1.177.620.001192
ORF1ab/nsp3370S370LtCatTa11B.1.177.860.000183
ORF1ab/nsp3370S370LtCatTa11B.1.177.90.001332
ORF1ab/nsp3370S370LtCatTa11B.1.1790.003759
ORF1ab/nsp3370S370ATcaGca11B.1.2210.000071
ORF1ab/nsp3370S370LtCatTa11B.1.2320.000537
ORF1ab/nsp3370S370StcAtcG11B.1.2430.00007
ORF1ab/nsp3370S370LtCatTa11B.1.258.160.001637
ORF1ab/nsp3370S370ATcaGca11B.1.258.170.000104
ORF1ab/nsp3370S370LtCatTa11B.1.2740.011905
ORF1ab/nsp3370S370LtCatTa11B.1.2790.000514
ORF1ab/nsp3370S370LtCatTa11B.1.2800.007143
ORF1ab/nsp3370S370XtCatAa11B.1.3010.005917
ORF1ab/nsp3370S370LtCatTa11B.1.3110.000275
ORF1ab/nsp3370S370PTcaCca11B.1.3110.000275
ORF1ab/nsp3370S370LtCatTa11B.1.3290.000608
ORF1ab/nsp3370S370XtCatAa11B.1.3440.008197
ORF1ab/nsp3370S370delTCA---11B.1.3510.00003
ORF1ab/nsp3370S370StcAtcG11B.1.3510.00003
ORF1ab/nsp3370S370LtCatTa11B.1.351.30.000876
ORF1ab/nsp3370S370LtCatTa11B.1.351.50.0006
ORF1ab/nsp3370S370LtCatTa11B.1.3560.001727
ORF1ab/nsp3370S370StcAtcG11B.1.36.100.004785
ORF1ab/nsp3370S370LtCatTa11B.1.36.290.000517
ORF1ab/nsp3370S370LtCatTa11B.1.36.310.001751
ORF1ab/nsp3370S370LtCatTa11B.1.36.70.004
ORF1ab/nsp3370S370LtCatTa11B.1.3620.001541
ORF1ab/nsp3370S370StcAtcG11B.1.3670.000792
ORF1ab/nsp3370S370LtCatTa11B.1.3670.000792
ORF1ab/nsp3370S370LtCatTa11B.1.3970.004854
ORF1ab/nsp3370S370del1tcAtc-11B.1.4090.000781
ORF1ab/nsp3370S370LtCatTa11B.1.4130.004255
ORF1ab/nsp3370S370LtCatTa11B.1.4280.00102
ORF1ab/nsp3370S370StcAtcG11B.1.4290.000024
ORF1ab/nsp3370S370LtCatTa11B.1.4500.011364
ORF1ab/nsp3370S370LtCatTa11B.1.4560.003268
ORF1ab/nsp3370S370delTCA---11B.1.5240.001406
ORF1ab/nsp3370S370delTCA---11B.1.5250.000113
ORF1ab/nsp3370S370LtCatTa11B.1.5580.004566
ORF1ab/nsp3370S370LtCatTa11B.1.5610.000397
ORF1ab/nsp3370S370LtCatTa11B.1.5640.000426
ORF1ab/nsp3370S370LtCatTa11B.1.5650.00081
ORF1ab/nsp3370S370LtCatTa11B.1.5680.001111
ORF1ab/nsp3370S370LtCatTa11B.1.5750.000303
ORF1ab/nsp3370S370LtCatTa11B.1.575.10.002439
ORF1ab/nsp3370S370CtCAtGT11B.1.5760.000907
ORF1ab/nsp3370S370ITCAATT11B.1.5760.000907
ORF1ab/nsp3370S370FtCAtTT11B.1.5760.000907
ORF1ab/nsp3370S370STCAAGT11B.1.5760.000907
ORF1ab/nsp3370S370RTCAAGG11B.1.5760.000907
ORF1ab/nsp3370S370LtCAtTG11B.1.5760.000907
ORF1ab/nsp3370S370MTCAATG11B.1.5760.000907
ORF1ab/nsp3370S370WtCAtGG11B.1.5760.000907
ORF1ab/nsp3370S370LtCatTa11B.1.5900.004545
ORF1ab/nsp3370S370delTCA---11B.1.5950.000261
ORF1ab/nsp3370S370LtCatTa11B.1.595.20.04
ORF1ab/nsp3370S370PTcaCca11B.1.5960.000087
ORF1ab/nsp3370S370ATcaGca11B.1.5960.000087
ORF1ab/nsp3370S370PTcaCca11B.1.6090.000479
ORF1ab/nsp3370S370LtCatTa11B.1.6100.003546
ORF1ab/nsp3370S370delTCA---11B.1.617.20.000004
ORF1ab/nsp3370S370LtCatTa11B.1.6200.000946
ORF1ab/nsp3370S370LtCatTa11B.1.6230.000536
ORF1ab/nsp3370S370StcAtcT11B.1.6280.000352
ORF1ab/nsp3370S370LtCatTa11B.1.6360.006711
ORF1ab/nsp3370S370LtCatTa11B.1.830.015385
ORF1ab/nsp3370S370LtCatTa11B.100.008264
ORF1ab/nsp3370S370LtCatTa11B.30.000831
ORF1ab/nsp3370S370LtCatTa11B.4.70.010101
ORF1ab/nsp3370S370StcAtcG11B.400.000364
ORF1ab/nsp3370S370delTCA---11B.570.015152
ORF1ab/nsp3370S370LtCatTa11C.160.00106
ORF1ab/nsp3370S370PTcaCca11C.36.30.000567
ORF1ab/nsp3370S370StcAtcG11D.20.000075
ORF1ab/nsp3370S370StcAtcT11N.50.001767
ORF1ab/nsp3370S370delTCA---11N.60.007092
ORF1ab/nsp3370S370delTCA---11P.10.000016
ORF1ab/nsp3370S370YtCAtAT11P.10.000016
ORF1ab/nsp3370S370XtCatAa11P.10.000016
ORF1ab/nsp3370S370NTCAAAT11P.10.000016
ORF1ab/nsp3370S370KTCaAAa11P.10.000016
ORF1ab/nsp3370S370FtCAtTT11P.10.000016
ORF1ab/nsp3370S370del1tCat-a11P.1.10.000318
ORF1ab/nsp3370S370del1tCat-a11P.1.120.000484
ORF1ab/nsp3370S370del1tCat-a11P.1.170.000162
ORF1ab/nsp3370S370del1tCat-a11P.1.70.000319
ORF1ab/nsp3370S370StcAtcT11Q.10.000126

CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk

CoV-GLUE uses sequence data from GISAID. GISAID data provided via this web application is subject to GISAID's Terms and Conditions.