CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF1ab/nsp3 : CodonNum = 370

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF1ab/nsp3370S370LS1188LnonsyntCatTa1198881198700.999853827-3829
ORF1ab/nsp3370S370LS1188LnonsyntCAtTG119888140.0001167763827-3829
ORF1ab/nsp3370S370LS1188LnonsynTCaCTa11988820.00001668223827-3829
ORF1ab/nsp3370S370LS1188LnonsynTCACTT11988820.00001668223827-3829
ORF1ab/nsp3370S370SS1188SsyntcAtcG2721430.5257353827-3829
ORF1ab/nsp3370S370SS1188SsyntcAtcC272850.31253827-3829
ORF1ab/nsp3370S370SS1188SsyntcAtcT272330.1213243827-3829
ORF1ab/nsp3370S370SS1188SsynTCAAGT272110.04044123827-3829
ORF1ab/nsp3370S370PS1188PnonsynTcaCca1761750.9943183827-3829
ORF1ab/nsp3370S370PS1188PnonsynTcACcT17610.005681823827-3829
ORF1ab/nsp3370S370IS1188InonsynTCAATT80430.53753827-3829
ORF1ab/nsp3370S370IS1188InonsynTCaATa80350.43753827-3829
ORF1ab/nsp3370S370IS1188InonsynTCAATC8020.0253827-3829
ORF1ab/nsp3370S370delS1188deldelTCA---707013827-3829
ORF1ab/nsp3370S370AS1188AnonsynTcaGca686813827-3829
ORF1ab/nsp3370S370XS1188XnonsyntCatAa57400.7017543827-3829
ORF1ab/nsp3370S370XS1188XnonsyntCatGa57100.1754393827-3829
ORF1ab/nsp3370S370XS1188XnonsyntCAtAG5770.1228073827-3829
ORF1ab/nsp3370S370FS1188FnonsyntCAtTT55500.9090913827-3829
ORF1ab/nsp3370S370FS1188FnonsyntCAtTC5550.09090913827-3829
ORF1ab/nsp3370S370YS1188YnonsyntCAtAT39370.9487183827-3829
ORF1ab/nsp3370S370YS1188YnonsyntCAtAC3920.05128213827-3829
ORF1ab/nsp3370S370KS1188KnonsynTCaAAa38320.8421053827-3829
ORF1ab/nsp3370S370KS1188KnonsynTCAAAG3860.1578953827-3829
ORF1ab/nsp3370S370NS1188NnonsynTCAAAT37350.9459463827-3829
ORF1ab/nsp3370S370NS1188NnonsynTCAAAC3720.05405413827-3829
ORF1ab/nsp3370S370del1S1188del1deltCat-a24190.7916673827-3829
ORF1ab/nsp3370S370del1S1188del1deltcAtc-2440.1666673827-3829
ORF1ab/nsp3370S370del1S1188del1deltCAtT-2410.04166673827-3829
ORF1ab/nsp3370S370CS1188CnonsyntCAtGT15130.8666673827-3829
ORF1ab/nsp3370S370CS1188CnonsyntCAtGC1520.1333333827-3829
ORF1ab/nsp3370S370TS1188TnonsynTcaAca13120.9230773827-3829
ORF1ab/nsp3370S370RS1188RnonsynTCaAGa1380.6153853827-3829
ORF1ab/nsp3370S370RS1188RnonsynTCAAGG1350.3846153827-3829
ORF1ab/nsp3370S370TS1188TnonsynTcAAcT1310.07692313827-3829
ORF1ab/nsp3370S370MS1188MnonsynTCAATG9913827-3829
ORF1ab/nsp3370S370VS1188VnonsynTCAGTT730.4285713827-3829
ORF1ab/nsp3370S370VS1188VnonsynTCAGTG720.2857143827-3829
ORF1ab/nsp3370S370VS1188VnonsynTCAGTC720.2857143827-3829
ORF1ab/nsp3370S370del2S1188del2deltCAt--650.8333333827-3829
ORF1ab/nsp3370S370del2S1188del2delTCa--a610.1666673827-3829
ORF1ab/nsp3370S370WS1188WnonsyntCAtGG5513827-3829
ORF1ab/nsp3370S370GS1188GnonsynTCAGGT210.53827-3829
ORF1ab/nsp3370S370GS1188GnonsynTCAGGC210.53827-3829
ORF1ab/nsp3370S370QS1188QnonsynTCaCAa1113827-3829
ORF1ab/nsp3370S370ES1188EnonsynTCAGAG1113827-3829
ORF1ab/nsp3370S370HS1188HnonsynTCACAT1113827-3829
ORF1ab/nsp3370S370DS1188DnonsynTCAGAT1113827-3829

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF1ab/nsp3370S370LtCatTa119870119888All0.022927
ORF1ab/nsp3370S370LtCAtTG14119888All0.000003
ORF1ab/nsp3370S370LTCaCTa2119888All0
ORF1ab/nsp3370S370LTCACTT2119888All0
ORF1ab/nsp3370S370LtCatTa6213162132P.10.978811
ORF1ab/nsp3370S370LtCAtTG162132P.10.000016
ORF1ab/nsp3370S370LtCatTa2086220862P.1.140.997228
ORF1ab/nsp3370S370LtCatTa61316131P.1.170.99175
ORF1ab/nsp3370S370LtCatTa42284228P.1.150.982342
ORF1ab/nsp3370S370LtCatTa36783678P.1.100.991108
ORF1ab/nsp3370S370LtCatTa30633063P.1.70.977969
ORF1ab/nsp3370S370LtCatTa29702970P.1.10.943456
ORF1ab/nsp3370S370LtCatTa26192619P.1.160.979798
ORF1ab/nsp3370S370LtCatTa19141914P.1.120.926428
ORF1ab/nsp3370S370LtCatTa13701384B.1.1.70.001226
ORF1ab/nsp3370S370LtCAtTG101384B.1.1.70.000009
ORF1ab/nsp3370S370LTCaCTa21384B.1.1.70.000002
ORF1ab/nsp3370S370LTCACTT21384B.1.1.70.000002
ORF1ab/nsp3370S370LtCatTa11111111P.1.17.10.972003
ORF1ab/nsp3370S370LtCatTa10811081P.1.130.971249
ORF1ab/nsp3370S370LtCatTa10701070AY.40.001665
ORF1ab/nsp3370S370LtCatTa10231023P.1.40.999023
ORF1ab/nsp3370S370LtCatTa854854P.1.20.987283
ORF1ab/nsp3370S370LtCatTa674674AY.700.140534
ORF1ab/nsp3370S370LtCatTa514514P.1.61
ORF1ab/nsp3370S370LtCatTa383383B.1.617.20.001442
ORF1ab/nsp3370S370StcAtcG143272All0.000027
ORF1ab/nsp3370S370StcAtcC85272All0.000016
ORF1ab/nsp3370S370StcAtcT33272All0.000006
ORF1ab/nsp3370S370STCAAGT11272All0.000002
ORF1ab/nsp3370S370LtCatTa272272B.1.20.002395
ORF1ab/nsp3370S370LtCatTa220220B.1.1.700.075034
ORF1ab/nsp3370S370LtCatTa208208P.1.80.995215
ORF1ab/nsp3370S370LtCatTa205205P.1.90.985577
ORF1ab/nsp3370S370LtCatTa185185AY.1200.006878
ORF1ab/nsp3370S370LtCatTa183183B.10.001676
ORF1ab/nsp3370S370LtCatTa177177B.1.1.2220.036108
ORF1ab/nsp3370S370PTcaCca175176All0.000033
ORF1ab/nsp3370S370PTcACcT1176All0
ORF1ab/nsp3370S370LtCatTa144144AY.250.000866
ORF1ab/nsp3370S370LtCatTa130130AY.430.000576
ORF1ab/nsp3370S370LtCatTa119119AY.30.001184
ORF1ab/nsp3370S370LtCatTa111111B.1.177.820.052983
ORF1ab/nsp3370S370LtCatTa9898B.1.10.001778
ORF1ab/nsp3370S370LtCatTa9898B.1.177.650.065203
ORF1ab/nsp3370S370LtCatTa9898P.1.111
ORF1ab/nsp3370S370LtCatTa9292AY.440.00056
ORF1ab/nsp3370S370LtCatTa8686B.1.5260.002021
ORF1ab/nsp3370S370LtCatTa8383P.1.10.10.674797
ORF1ab/nsp3370S370ITCAATT4380All0.000008
ORF1ab/nsp3370S370ITCaATa3580All0.000007
ORF1ab/nsp3370S370ITCAATC280All0
ORF1ab/nsp3370S370ITCAATT3974B.1.1.70.000035
ORF1ab/nsp3370S370ITCaATa3374B.1.1.70.00003
ORF1ab/nsp3370S370ITCAATC274B.1.1.70.000002
ORF1ab/nsp3370S370delTCA---7070All0.000013
ORF1ab/nsp3370S370StcAtcC6669B.10.000605
ORF1ab/nsp3370S370StcAtcG269B.10.000018
ORF1ab/nsp3370S370STCAAGT169B.10.000009
ORF1ab/nsp3370S370ATcaGca6868All0.000013
ORF1ab/nsp3370S370PTcaCca6465B.1.1.70.000057
ORF1ab/nsp3370S370PTcACcT165B.1.1.70.000001
ORF1ab/nsp3370S370LtCatTa6363AY.260.001784
ORF1ab/nsp3370S370LtCatTa5959AY.1180.003696
ORF1ab/nsp3370S370XtCatAa4057All0.000008
ORF1ab/nsp3370S370XtCatGa1057All0.000002
ORF1ab/nsp3370S370XtCAtAG757All0.000001
ORF1ab/nsp3370S370FtCAtTT5055All0.00001
ORF1ab/nsp3370S370FtCAtTC555All0.000001
ORF1ab/nsp3370S370LtCatTa5151AY.1030.000317
ORF1ab/nsp3370S370FtCAtTT4650B.1.1.70.000041
ORF1ab/nsp3370S370FtCAtTC450B.1.1.70.000004
ORF1ab/nsp3370S370LtCatTa4949B.1.1770.000645
ORF1ab/nsp3370S370XtCatAa3148B.1.1.70.000028
ORF1ab/nsp3370S370XtCatGa1048B.1.1.70.000009
ORF1ab/nsp3370S370XtCAtAG748B.1.1.70.000006
ORF1ab/nsp3370S370LtCatTa4646AY.1190.001624
ORF1ab/nsp3370S370LtCatTa4646B.1.1.5190.001827
ORF1ab/nsp3370S370StcAtcG2646B.1.1.70.000023
ORF1ab/nsp3370S370STCAAGT946B.1.1.70.000008
ORF1ab/nsp3370S370StcAtcT846B.1.1.70.000007
ORF1ab/nsp3370S370StcAtcC346B.1.1.70.000003
ORF1ab/nsp3370S370LtCatTa4545C.370.005223
ORF1ab/nsp3370S370LtCatTa4444B.1.1280.027954
ORF1ab/nsp3370S370LtCatTa4444B.1.4290.001035
ORF1ab/nsp3370S370LtCatTa4143AY.1000.001886
ORF1ab/nsp3370S370LtCAtTG243AY.1000.000092
ORF1ab/nsp3370S370LtCatTa4242AY.340.004073
ORF1ab/nsp3370S370ATcaGca4242B.1.20.00037
ORF1ab/nsp3370S370LtCatTa4040AY.98.10.001937
ORF1ab/nsp3370S370YtCAtAT3739All0.000007
ORF1ab/nsp3370S370YtCAtAC239All0
ORF1ab/nsp3370S370KTCaAAa3238All0.000006
ORF1ab/nsp3370S370KTCAAAG638All0.000001
ORF1ab/nsp3370S370LtCatTa3838B.1.177.560.025367
ORF1ab/nsp3370S370NTCAAAT3537All0.000007
ORF1ab/nsp3370S370NTCAAAC237All0
ORF1ab/nsp3370S370YtCAtAT3537B.1.1.70.000031
ORF1ab/nsp3370S370YtCAtAC237B.1.1.70.000002
ORF1ab/nsp3370S370KTCaAAa3036B.1.1.70.000027
ORF1ab/nsp3370S370KTCAAAG636B.1.1.70.000005
ORF1ab/nsp3370S370NTCAAAT3335B.1.1.70.00003
ORF1ab/nsp3370S370NTCAAAC235B.1.1.70.000002
ORF1ab/nsp3370S370LtCatTa3333B.1.3510.000981
ORF1ab/nsp3370S370LtCatTa3131B.1.2400.006682
ORF1ab/nsp3370S370LtCatTa3030B.1.2580.001996
ORF1ab/nsp3370S370LtCatTa2929P.1.31
ORF1ab/nsp3370S370PTcaCca2626B.1.20.000229
ORF1ab/nsp3370S370PTcaCca2525AY.30.000249
ORF1ab/nsp3370S370del1tCat-a1924All0.000004
ORF1ab/nsp3370S370del1tcAtc-424All0.000001
ORF1ab/nsp3370S370del1tCAtT-124All0
ORF1ab/nsp3370S370LtCatTa2424P.1.10.21
ORF1ab/nsp3370S370LtCatTa2323AY.1130.003275
ORF1ab/nsp3370S370StcAtcG2323B.1.1.5190.000913
ORF1ab/nsp3370S370LtCatTa2323B.1.5170.009821
ORF1ab/nsp3370S370LtCatTa2121B.1.177.810.003976
ORF1ab/nsp3370S370LtCatTa2020AY.1020.00053
ORF1ab/nsp3370S370LtCatTa2020AY.4.20.000434
ORF1ab/nsp3370S370LtCatTa2020AY.7.10.002254
ORF1ab/nsp3370S370LtCatTa1919R.10.00171
ORF1ab/nsp3370S370StcAtcG1118AY.40.000017
ORF1ab/nsp3370S370StcAtcT718AY.40.000011
ORF1ab/nsp3370S370LtCatTa1818B.1.5770.012371
ORF1ab/nsp3370S370LtCatTa1717AY.10.006727
ORF1ab/nsp3370S370LtCatTa1717AY.390.00042
ORF1ab/nsp3370S370LtCatTa1616AY.750.000896
ORF1ab/nsp3370S370LtCatTa1616B.1.4260.016145
ORF1ab/nsp3370S370CtCAtGT1315All0.000002
ORF1ab/nsp3370S370CtCAtGC215All0
ORF1ab/nsp3370S370LtCatTa1515B.1.1.280.004669
ORF1ab/nsp3370S370LtCatTa1414AY.200.000544
ORF1ab/nsp3370S370LtCatTa1414P.20.002613
ORF1ab/nsp3370S370TTcaAca1213All0.000002
ORF1ab/nsp3370S370RTCaAGa813All0.000002
ORF1ab/nsp3370S370RTCAAGG513All0.000001
ORF1ab/nsp3370S370TTcAAcT113All0
ORF1ab/nsp3370S370LtCatTa1313AY.300.005144
ORF1ab/nsp3370S370CtCAtGT1113B.1.1.70.00001
ORF1ab/nsp3370S370CtCAtGC213B.1.1.70.000002
ORF1ab/nsp3370S370LtCatTa1313B.1.4270.000656
ORF1ab/nsp3370S370LtCatTa1313B.1.6210.001151
ORF1ab/nsp3370S370LtCatTa1313P.1.51
ORF1ab/nsp3370S370LtCatTa1212AY.460.001249
ORF1ab/nsp3370S370LtCatTa1212AY.50.000248
ORF1ab/nsp3370S370delTCA---1212AY.50.000248
ORF1ab/nsp3370S370delTCA---1212B.1.1.70.000011
ORF1ab/nsp3370S370RTCaAGa812B.1.1.70.000007
ORF1ab/nsp3370S370RTCAAGG412B.1.1.70.000004
ORF1ab/nsp3370S370LtCatTa1212B.1.177.210.000918
ORF1ab/nsp3370S370LtCatTa1212B.1.177.720.040678
ORF1ab/nsp3370S370LtCatTa1111AY.230.000767
ORF1ab/nsp3370S370LtCatTa1111B.1.360.001605
ORF1ab/nsp3370S370PTcaCca1111B.1.617.20.000041
ORF1ab/nsp3370S370LtCatTa1010A.2.50.00499
ORF1ab/nsp3370S370StcAtcG910AY.440.000055
ORF1ab/nsp3370S370StcAtcC110AY.440.000006
ORF1ab/nsp3370S370LtCatTa1010AY.46.40.001645
ORF1ab/nsp3370S370PTcaCca1010B.1.10.000181
ORF1ab/nsp3370S370LtCatTa1010B.1.5250.001132
ORF1ab/nsp3370S370LtCatTa1010B.1.5960.000871
ORF1ab/nsp3370S370LtCatTa1010N.10.169492
ORF1ab/nsp3370S370MTCAATG99All0.000002
ORF1ab/nsp3370S370StcAtcT59AY.250.00003
ORF1ab/nsp3370S370StcAtcG49AY.250.000024
ORF1ab/nsp3370S370LtCatTa99B.1.1.5280.043269
ORF1ab/nsp3370S370LtCatTa99B.1.1600.000281
ORF1ab/nsp3370S370StcAtcC99B.1.177.730.005096
ORF1ab/nsp3370S370PTcaCca99B.1.2930.1125
ORF1ab/nsp3370S370LtCatTa99C.360.008197
ORF1ab/nsp3370S370del1tCat-a99P.10.000142
ORF1ab/nsp3370S370LtCatTa88AY.1100.000902
ORF1ab/nsp3370S370LtCatTa88AY.290.000126
ORF1ab/nsp3370S370LtCatTa88AY.610.000838
ORF1ab/nsp3370S370LtCatTa88AY.99.20.000737
ORF1ab/nsp3370S370ATcaGca88B.1.10.000145
ORF1ab/nsp3370S370LtCatTa88B.1.1.3060.003507
ORF1ab/nsp3370S370MTCAATG88B.1.1.70.000007
ORF1ab/nsp3370S370LtCatTa88B.1.3690.002282
ORF1ab/nsp3370S370VTCAGTT37All0.000001
ORF1ab/nsp3370S370VTCAGTG27All0
ORF1ab/nsp3370S370VTCAGTC27All0
ORF1ab/nsp3370S370LtCatTa77AY.39.10.000277
ORF1ab/nsp3370S370StcAtcT47AY.430.000018
ORF1ab/nsp3370S370StcAtcG27AY.430.000009
ORF1ab/nsp3370S370StcAtcC17AY.430.000004
ORF1ab/nsp3370S370LtCatTa77AY.480.003256
ORF1ab/nsp3370S370LtCatTa77AZ.20.005747
ORF1ab/nsp3370S370PTcaCca77B.10.000064
ORF1ab/nsp3370S370ATcaGca77B.10.000064
ORF1ab/nsp3370S370VTCAGTT37B.1.1.70.000003
ORF1ab/nsp3370S370VTCAGTC27B.1.1.70.000002
ORF1ab/nsp3370S370VTCAGTG27B.1.1.70.000002
ORF1ab/nsp3370S370del2tCAt--56All0.000001
ORF1ab/nsp3370S370del2TCa--a16All0
ORF1ab/nsp3370S370LtCatTa66AY.116.10.001869
ORF1ab/nsp3370S370LtCatTa66AY.920.001724
ORF1ab/nsp3370S370LtCatTa66B0.000767
ORF1ab/nsp3370S370StcAtcG66B.1.10.000109
ORF1ab/nsp3370S370LtCatTa66B.1.1.3480.004777
ORF1ab/nsp3370S370LtCatTa66B.1.1700.025862
ORF1ab/nsp3370S370LtCatTa66B.1.177.120.00091
ORF1ab/nsp3370S370LtCatTa66B.1.3990.011605
ORF1ab/nsp3370S370LtCatTa66B.1.5950.001566
ORF1ab/nsp3370S370LtCatTa66N.40.025532
ORF1ab/nsp3370S370del1tCat-a66P.1.140.000287
ORF1ab/nsp3370S370WtCAtGG55All0.000001
ORF1ab/nsp3370S370LtCatTa55AY.1050.003215
ORF1ab/nsp3370S370LtCatTa55AY.1060.001674
ORF1ab/nsp3370S370LtCatTa55AY.20.001781
ORF1ab/nsp3370S370LtCatTa55AY.240.002155
ORF1ab/nsp3370S370PTcaCca55AY.390.000124
ORF1ab/nsp3370S370LtCatTa55AY.46.60.000361
ORF1ab/nsp3370S370LtCatTa55AY.470.000156
ORF1ab/nsp3370S370LtCatTa55AY.70.00098
ORF1ab/nsp3370S370LtCatTa55AY.7.20.002796
ORF1ab/nsp3370S370LtCatTa55AY.9.20.000184
ORF1ab/nsp3370S370LtCatTa55B.1.1.1610.017668
ORF1ab/nsp3370S370LtCatTa55B.1.1.5070.043478
ORF1ab/nsp3370S370LtCatTa55B.1.1.630.001929
ORF1ab/nsp3370S370delTCA---55B.1.20.000044
ORF1ab/nsp3370S370StcAtcG35B.1.20.000026
ORF1ab/nsp3370S370StcAtcT15B.1.20.000009
ORF1ab/nsp3370S370StcAtcC15B.1.20.000009
ORF1ab/nsp3370S370StcAtcG35B.1.617.20.000011
ORF1ab/nsp3370S370StcAtcT25B.1.617.20.000008
ORF1ab/nsp3370S370LtCatTa55C.37.10.013089
ORF1ab/nsp3370S370StcAtcG55P.20.000933
ORF1ab/nsp3370S370LtCatTa55Q.10.000632
ORF1ab/nsp3370S370StcAtcG44AY.1030.000025
ORF1ab/nsp3370S370TTcaAca44AY.1170.000338
ORF1ab/nsp3370S370LtCatTa44AY.420.000161
ORF1ab/nsp3370S370StcAtcG44AY.50.000083
ORF1ab/nsp3370S370LtCatTa44AY.590.002119
ORF1ab/nsp3370S370LtCatTa44AY.840.00175
ORF1ab/nsp3370S370delTCA---44B.10.000037
ORF1ab/nsp3370S370LtCatTa44B.1.1.2310.012384
ORF1ab/nsp3370S370LtCatTa44B.1.1.3170.001647
ORF1ab/nsp3370S370LtCatTa44B.1.1.3260.007042
ORF1ab/nsp3370S370WtCAtGG44B.1.1.70.000004
ORF1ab/nsp3370S370LtCatTa44B.1.2430.000278
ORF1ab/nsp3370S370LtCatTa44B.1.36.170.001976
ORF1ab/nsp3370S370LtCatTa44B.1.36.180.001681
ORF1ab/nsp3370S370LtCatTa44B.1.438.10.000429
ORF1ab/nsp3370S370LtCatTa44B.1.466.20.001565
ORF1ab/nsp3370S370delTCA---44B.1.5960.000349
ORF1ab/nsp3370S370LtCatTa44B.1.617.10.000516
ORF1ab/nsp3370S370LtCatTa44B.400.001457
ORF1ab/nsp3370S370StcAtcG44C.370.000464
ORF1ab/nsp3370S370LtCatTa33A0.001161
ORF1ab/nsp3370S370TTcaAca33AY.1020.00008
ORF1ab/nsp3370S370LtCatTa33AY.1160.00086
ORF1ab/nsp3370S370LtCatTa33AY.3.10.000256
ORF1ab/nsp3370S370LtCatTa33AY.450.000365
ORF1ab/nsp3370S370ATcaGca33AY.470.000093
ORF1ab/nsp3370S370LtCatTa33AY.650.001599
ORF1ab/nsp3370S370LtCatTa33B.1.1.2200.005576
ORF1ab/nsp3370S370StcAtcG33B.1.1.280.000934
ORF1ab/nsp3370S370LtCatTa33B.1.1.370.000579
ORF1ab/nsp3370S370LtCatTa33B.1.177.70.000495
ORF1ab/nsp3370S370LtCatTa33B.1.2650.003812
ORF1ab/nsp3370S370LtCatTa33B.1.36.360.001806
ORF1ab/nsp3370S370LtCatTa33B.1.4090.002344
ORF1ab/nsp3370S370LtCatTa33B.1.4330.009585
ORF1ab/nsp3370S370delTCA---33B.1.5260.000071
ORF1ab/nsp3370S370LtCatTa33B.1.5820.001472
ORF1ab/nsp3370S370StcAtcG33B.1.6370.000219
ORF1ab/nsp3370S370LtCatTa33C.170.166667
ORF1ab/nsp3370S370LtCatTa33Q.80.000495
ORF1ab/nsp3370S370GTCAGGT12All0
ORF1ab/nsp3370S370GTCAGGC12All0
ORF1ab/nsp3370S370LtCatTa22AY.1140.000462
ORF1ab/nsp3370S370LtCatTa22AY.130.000322
ORF1ab/nsp3370S370LtCatTa22AY.16.10.00094
ORF1ab/nsp3370S370delTCA---22AY.16.10.00094
ORF1ab/nsp3370S370ITCAATT12AY.250.000006
ORF1ab/nsp3370S370ITCaATa12AY.250.000006
ORF1ab/nsp3370S370LtCatTa22AY.320.001065
ORF1ab/nsp3370S370LtCatTa22AY.330.000134
ORF1ab/nsp3370S370LtCatTa22AY.360.000296
ORF1ab/nsp3370S370del2tCAt--12AY.40.000002
ORF1ab/nsp3370S370del2TCa--a12AY.40.000002
ORF1ab/nsp3370S370StcAtcG22AY.4.2.10.000298
ORF1ab/nsp3370S370LtCatTa22AY.4.2.10.000298
ORF1ab/nsp3370S370LtCatTa22AY.400.001929
ORF1ab/nsp3370S370LtCatTa22AY.5.30.000675
ORF1ab/nsp3370S370LtCatTa22AY.570.001312
ORF1ab/nsp3370S370StcAtcG22AY.610.00021
ORF1ab/nsp3370S370LtCatTa22AY.740.000231
ORF1ab/nsp3370S370LtCatTa22AY.9.10.000167
ORF1ab/nsp3370S370LtCatTa22AY.910.001461
ORF1ab/nsp3370S370LtCatTa22AY.980.000158
ORF1ab/nsp3370S370XtCatAa22B.10.000018
ORF1ab/nsp3370S370LtCatTa22B.1.1.250.001137
ORF1ab/nsp3370S370StcAtcG22B.1.1.250.001137
ORF1ab/nsp3370S370LtCatTa22B.1.1.270.011299
ORF1ab/nsp3370S370LtCatTa22B.1.1.3110.000716
ORF1ab/nsp3370S370LtCatTa22B.1.1.3180.000604
ORF1ab/nsp3370S370LtCatTa22B.1.1.3720.001377
ORF1ab/nsp3370S370LtCatTa22B.1.1.4090.005666
ORF1ab/nsp3370S370LtCatTa22B.1.1.560.035714
ORF1ab/nsp3370S370del2tCAt--22B.1.1.70.000002
ORF1ab/nsp3370S370ATcaGca22B.1.1.70.000002
ORF1ab/nsp3370S370del1tcAtc-22B.1.1.70.000002
ORF1ab/nsp3370S370GTCAGGT12B.1.1.70.000001
ORF1ab/nsp3370S370GTCAGGC12B.1.1.70.000001
ORF1ab/nsp3370S370TTcAAcT12B.1.1.70.000001
ORF1ab/nsp3370S370TTcaAca12B.1.1.70.000001
ORF1ab/nsp3370S370LtCatTa22B.1.110.30.001437
ORF1ab/nsp3370S370LtCatTa22B.1.177.730.001133
ORF1ab/nsp3370S370del2tCAt--22B.1.20.000018
ORF1ab/nsp3370S370LtCatTa22B.1.2210.000142
ORF1ab/nsp3370S370LtCatTa22B.1.2340.000264
ORF1ab/nsp3370S370StcAtcG22B.1.2340.000264
ORF1ab/nsp3370S370PTcaCca22B.1.2430.000139
ORF1ab/nsp3370S370LtCatTa22B.1.258.170.000208
ORF1ab/nsp3370S370LtCatTa22B.1.3240.00321
ORF1ab/nsp3370S370StcAtcG22B.1.36.80.002
ORF1ab/nsp3370S370LtCatTa22B.1.3750.001639
ORF1ab/nsp3370S370delTCA---22B.1.4290.000047
ORF1ab/nsp3370S370LtCatTa22B.1.4990.002101
ORF1ab/nsp3370S370LtCatTa22B.1.5240.002813
ORF1ab/nsp3370S370StcAtcG22B.1.5260.000047
ORF1ab/nsp3370S370LtCatTa22B.1.5330.019231
ORF1ab/nsp3370S370delTCA---22B.1.6210.000177
ORF1ab/nsp3370S370LtCatTa22B.1.621.10.001012
ORF1ab/nsp3370S370LtCatTa22C.40.02
ORF1ab/nsp3370S370LtCatTa22D.20.00015
ORF1ab/nsp3370S370ITCaATa12P.10.000016
ORF1ab/nsp3370S370ITCAATT12P.10.000016
ORF1ab/nsp3370S370delTCA---22P.1.120.000968
ORF1ab/nsp3370S370LtCatTa22Q.20.001227
ORF1ab/nsp3370S370PTcaCca22Q.30.00029
ORF1ab/nsp3370S370LtCatTa22Z.10.00578
ORF1ab/nsp3370S370FtCAtTC110.055556
ORF1ab/nsp3370S370LtCatTa110.055556
ORF1ab/nsp3370S370StcAtcC110.055556
ORF1ab/nsp3370S370XtCatAa11A0.000387
ORF1ab/nsp3370S370ATcaGca11A0.000387
ORF1ab/nsp3370S370LtCatTa11A.270.001656
ORF1ab/nsp3370S370LtCatTa11AE.30.032258
ORF1ab/nsp3370S370QTCaCAa11All0
ORF1ab/nsp3370S370HTCACAT11All0
ORF1ab/nsp3370S370ETCAGAG11All0
ORF1ab/nsp3370S370DTCAGAT11All0
ORF1ab/nsp3370S370StcAtcG11AY.1020.000027
ORF1ab/nsp3370S370PTcaCca11AY.1030.000006
ORF1ab/nsp3370S370LtCatTa11AY.1080.001103
ORF1ab/nsp3370S370StcAtcT11AY.1110.000183
ORF1ab/nsp3370S370LtCatTa11AY.1170.000085
ORF1ab/nsp3370S370XtCatAa11AY.1190.000035
ORF1ab/nsp3370S370LtCatTa11AY.120.20.001285
ORF1ab/nsp3370S370LtCatTa11AY.1210.000135
ORF1ab/nsp3370S370LtCatTa11AY.140.000088
ORF1ab/nsp3370S370LtCatTa11AY.160.00038
ORF1ab/nsp3370S370StcAtcC11AY.200.000039
ORF1ab/nsp3370S370delTCA---11AY.230.00007
ORF1ab/nsp3370S370XtCatAa11AY.250.000006
ORF1ab/nsp3370S370NTCAAAT11AY.250.000006
ORF1ab/nsp3370S370delTCA---11AY.250.000006
ORF1ab/nsp3370S370YtCAtAT11AY.250.000006
ORF1ab/nsp3370S370FtCAtTT11AY.250.000006
ORF1ab/nsp3370S370KTCaAAa11AY.250.000006
ORF1ab/nsp3370S370LtCatTa11AY.270.000065
ORF1ab/nsp3370S370LtCatTa11AY.29.10.000221
ORF1ab/nsp3370S370delTCA---11AY.30.00001
ORF1ab/nsp3370S370StcAtcG11AY.30.00001
ORF1ab/nsp3370S370StcAtcG11AY.340.000097
ORF1ab/nsp3370S370LtCatTa11AY.34.10.00051
ORF1ab/nsp3370S370LtCatTa11AY.370.000316
ORF1ab/nsp3370S370StcAtcT11AY.390.000025
ORF1ab/nsp3370S370delTCA---11AY.390.000025
ORF1ab/nsp3370S370del1tCAtT-11AY.40.000002
ORF1ab/nsp3370S370TTcaAca11AY.40.000002
ORF1ab/nsp3370S370delTCA---11AY.40.000002
ORF1ab/nsp3370S370PTcaCca11AY.40.000002
ORF1ab/nsp3370S370ATcaGca11AY.40.000002
ORF1ab/nsp3370S370StcAtcG11AY.4.30.000842
ORF1ab/nsp3370S370LtCatTa11AY.4.30.000842
ORF1ab/nsp3370S370LtCatTa11AY.4.50.000107
ORF1ab/nsp3370S370PTcaCca11AY.420.00004
ORF1ab/nsp3370S370delTCA---11AY.430.000004
ORF1ab/nsp3370S370PTcaCca11AY.430.000004
ORF1ab/nsp3370S370PTcaCca11AY.46.10.001027
ORF1ab/nsp3370S370PTcaCca11AY.46.20.000635
ORF1ab/nsp3370S370LtCatTa11AY.46.50.000198
ORF1ab/nsp3370S370XtCatAa11AY.520.000814
ORF1ab/nsp3370S370LtCatTa11AY.530.000288
ORF1ab/nsp3370S370LtCatTa11AY.60.000041
ORF1ab/nsp3370S370LtCatTa11AY.620.000436
ORF1ab/nsp3370S370LtCatTa11AY.630.000387
ORF1ab/nsp3370S370LtCatTa11AY.640.000595
ORF1ab/nsp3370S370StcAtcG11AY.680.000274
ORF1ab/nsp3370S370StcAtcG11AY.7.10.000113
ORF1ab/nsp3370S370delTCA---11AY.75.10.00018
ORF1ab/nsp3370S370LtCatTa11AY.75.10.00018
ORF1ab/nsp3370S370PTcaCca11AY.780.001541
ORF1ab/nsp3370S370LtCatTa11AY.780.001541
ORF1ab/nsp3370S370LtCatTa11AY.880.000884
ORF1ab/nsp3370S370LtCatTa11AY.90.000068
ORF1ab/nsp3370S370StcAtcG11AY.910.00073
ORF1ab/nsp3370S370LtCatTa11AY.930.000273
ORF1ab/nsp3370S370StcAtcG11AY.980.000079
ORF1ab/nsp3370S370StcAtcC11AY.98.10.000048
ORF1ab/nsp3370S370LtCatTa11AY.990.001049
ORF1ab/nsp3370S370LtCatTa11AZ.30.00152
ORF1ab/nsp3370S370StcAtcC11B0.000128
ORF1ab/nsp3370S370TTcaAca11B.10.000009
ORF1ab/nsp3370S370del1tcAtc-11B.10.000009
ORF1ab/nsp3370S370CtCAtGT11B.10.000009
ORF1ab/nsp3370S370ITCAATT11B.10.000009
ORF1ab/nsp3370S370FtCAtTT11B.10.000009
ORF1ab/nsp3370S370delTCA---11B.1.10.000018
ORF1ab/nsp3370S370TTcaAca11B.1.10.000018
ORF1ab/nsp3370S370LtCatTa11B.1.1.1010.01
ORF1ab/nsp3370S370LtCatTa11B.1.1.1530.001095
ORF1ab/nsp3370S370ATcaGca11B.1.1.1570.000913
ORF1ab/nsp3370S370LtCatTa11B.1.1.1630.007634
ORF1ab/nsp3370S370delTCA---11B.1.1.1920.002309
ORF1ab/nsp3370S370LtCatTa11B.1.1.2140.000055
ORF1ab/nsp3370S370LtCatTa11B.1.1.2160.00089
ORF1ab/nsp3370S370StcAtcG11B.1.1.2200.001859
ORF1ab/nsp3370S370LtCatTa11B.1.1.2360.006897
ORF1ab/nsp3370S370LtCatTa11B.1.1.2370.005405
ORF1ab/nsp3370S370LtCatTa11B.1.1.2690.001353
ORF1ab/nsp3370S370LtCatTa11B.1.1.2740.005051
ORF1ab/nsp3370S370PTcaCca11B.1.1.280.000311
ORF1ab/nsp3370S370LtCatTa11B.1.1.2940.001266
ORF1ab/nsp3370S370LtCatTa11B.1.1.3290.003846
ORF1ab/nsp3370S370delTCA---11B.1.1.330.000421
ORF1ab/nsp3370S370LtCatTa11B.1.1.3690.000446
ORF1ab/nsp3370S370LtCatTa11B.1.1.3740.002375
ORF1ab/nsp3370S370LtCatTa11B.1.1.390.00051
ORF1ab/nsp3370S370LtCatTa11B.1.1.4070.041667
ORF1ab/nsp3370S370PTcaCca11B.1.1.4340.000349
ORF1ab/nsp3370S370LtCatTa11B.1.1.540.003021
ORF1ab/nsp3370S370HTCACAT11B.1.1.70.000001
ORF1ab/nsp3370S370QTCaCAa11B.1.1.70.000001
ORF1ab/nsp3370S370DTCAGAT11B.1.1.70.000001
ORF1ab/nsp3370S370ETCAGAG11B.1.1.70.000001
ORF1ab/nsp3370S370LtCatTa11B.1.1.990.02381
ORF1ab/nsp3370S370StcAtcG11B.1.110.30.000718
ORF1ab/nsp3370S370LtCatTa11B.1.1110.001175
ORF1ab/nsp3370S370StcAtcG11B.1.1390.000733
ORF1ab/nsp3370S370LtCatTa11B.1.1390.000733
ORF1ab/nsp3370S370delTCA---11B.1.1400.018868
ORF1ab/nsp3370S370LtCatTa11B.1.1470.000756
ORF1ab/nsp3370S370TTcaAca11B.1.1600.000031
ORF1ab/nsp3370S370delTCA---11B.1.1600.000031
ORF1ab/nsp3370S370LtCatTa11B.1.160.300.002976
ORF1ab/nsp3370S370PTcaCca11B.1.1770.000013
ORF1ab/nsp3370S370delTCA---11B.1.1770.000013
ORF1ab/nsp3370S370StcAtcG11B.1.177.230.003236
ORF1ab/nsp3370S370StcAtcT11B.1.177.40.000211
ORF1ab/nsp3370S370LtCatTa11B.1.177.40.000211
ORF1ab/nsp3370S370LtCatTa11B.1.177.410.0025
ORF1ab/nsp3370S370LtCatTa11B.1.177.510.004566
ORF1ab/nsp3370S370LtCatTa11B.1.177.550.002331
ORF1ab/nsp3370S370LtCatTa11B.1.177.570.000281
ORF1ab/nsp3370S370LtCatTa11B.1.177.600.000218
ORF1ab/nsp3370S370delTCA---11B.1.177.620.001192
ORF1ab/nsp3370S370LtCatTa11B.1.177.860.000183
ORF1ab/nsp3370S370LtCatTa11B.1.177.90.001332
ORF1ab/nsp3370S370LtCatTa11B.1.1790.003759
ORF1ab/nsp3370S370ATcaGca11B.1.2210.000071
ORF1ab/nsp3370S370LtCatTa11B.1.2320.000537
ORF1ab/nsp3370S370StcAtcG11B.1.2430.00007
ORF1ab/nsp3370S370LtCatTa11B.1.258.160.001637
ORF1ab/nsp3370S370ATcaGca11B.1.258.170.000104
ORF1ab/nsp3370S370LtCatTa11B.1.2740.011905
ORF1ab/nsp3370S370LtCatTa11B.1.2790.000514
ORF1ab/nsp3370S370LtCatTa11B.1.2800.007143
ORF1ab/nsp3370S370XtCatAa11B.1.3010.005917
ORF1ab/nsp3370S370LtCatTa11B.1.3110.000275
ORF1ab/nsp3370S370PTcaCca11B.1.3110.000275
ORF1ab/nsp3370S370LtCatTa11B.1.3290.000608
ORF1ab/nsp3370S370XtCatAa11B.1.3440.008197
ORF1ab/nsp3370S370delTCA---11B.1.3510.00003
ORF1ab/nsp3370S370StcAtcG11B.1.3510.00003
ORF1ab/nsp3370S370LtCatTa11B.1.351.30.000876
ORF1ab/nsp3370S370LtCatTa11B.1.351.50.0006
ORF1ab/nsp3370S370LtCatTa11B.1.3560.001727
ORF1ab/nsp3370S370StcAtcG11B.1.36.100.004785
ORF1ab/nsp3370S370LtCatTa11B.1.36.290.000517
ORF1ab/nsp3370S370LtCatTa11B.1.36.310.001751
ORF1ab/nsp3370S370LtCatTa11B.1.36.70.004
ORF1ab/nsp3370S370LtCatTa11B.1.3620.001541
ORF1ab/nsp3370S370StcAtcG11B.1.3670.000792
ORF1ab/nsp3370S370LtCatTa11B.1.3670.000792
ORF1ab/nsp3370S370LtCatTa11B.1.3970.004854
ORF1ab/nsp3370S370del1tcAtc-11B.1.4090.000781
ORF1ab/nsp3370S370LtCatTa11B.1.4130.004255
ORF1ab/nsp3370S370LtCatTa11B.1.4280.00102
ORF1ab/nsp3370S370StcAtcG11B.1.4290.000024
ORF1ab/nsp3370S370LtCatTa11B.1.4500.011364
ORF1ab/nsp3370S370LtCatTa11B.1.4560.003268
ORF1ab/nsp3370S370delTCA---11B.1.5240.001406
ORF1ab/nsp3370S370delTCA---11B.1.5250.000113
ORF1ab/nsp3370S370LtCatTa11B.1.5580.004566
ORF1ab/nsp3370S370LtCatTa11B.1.5610.000397
ORF1ab/nsp3370S370LtCatTa11B.1.5640.000426
ORF1ab/nsp3370S370LtCatTa11B.1.5650.00081
ORF1ab/nsp3370S370LtCatTa11B.1.5680.001111
ORF1ab/nsp3370S370LtCatTa11B.1.5750.000303
ORF1ab/nsp3370S370LtCatTa11B.1.575.10.002439
ORF1ab/nsp3370S370CtCAtGT11B.1.5760.000907
ORF1ab/nsp3370S370ITCAATT11B.1.5760.000907
ORF1ab/nsp3370S370FtCAtTT11B.1.5760.000907
ORF1ab/nsp3370S370STCAAGT11B.1.5760.000907
ORF1ab/nsp3370S370RTCAAGG11B.1.5760.000907
ORF1ab/nsp3370S370LtCAtTG11B.1.5760.000907
ORF1ab/nsp3370S370MTCAATG11B.1.5760.000907
ORF1ab/nsp3370S370WtCAtGG11B.1.5760.000907
ORF1ab/nsp3370S370LtCatTa11B.1.5900.004545
ORF1ab/nsp3370S370delTCA---11B.1.5950.000261
ORF1ab/nsp3370S370LtCatTa11B.1.595.20.04
ORF1ab/nsp3370S370PTcaCca11B.1.5960.000087
ORF1ab/nsp3370S370ATcaGca11B.1.5960.000087
ORF1ab/nsp3370S370PTcaCca11B.1.6090.000479
ORF1ab/nsp3370S370LtCatTa11B.1.6100.003546
ORF1ab/nsp3370S370delTCA---11B.1.617.20.000004
ORF1ab/nsp3370S370LtCatTa11B.1.6200.000946
ORF1ab/nsp3370S370LtCatTa11B.1.6230.000536
ORF1ab/nsp3370S370StcAtcT11B.1.6280.000352
ORF1ab/nsp3370S370LtCatTa11B.1.6360.006711
ORF1ab/nsp3370S370LtCatTa11B.1.830.015385
ORF1ab/nsp3370S370LtCatTa11B.100.008264
ORF1ab/nsp3370S370LtCatTa11B.30.000831
ORF1ab/nsp3370S370LtCatTa11B.4.70.010101
ORF1ab/nsp3370S370StcAtcG11B.400.000364
ORF1ab/nsp3370S370delTCA---11B.570.015152
ORF1ab/nsp3370S370LtCatTa11C.160.00106
ORF1ab/nsp3370S370PTcaCca11C.36.30.000567
ORF1ab/nsp3370S370StcAtcG11D.20.000075
ORF1ab/nsp3370S370StcAtcT11N.50.001767
ORF1ab/nsp3370S370delTCA---11N.60.007092
ORF1ab/nsp3370S370delTCA---11P.10.000016
ORF1ab/nsp3370S370YtCAtAT11P.10.000016
ORF1ab/nsp3370S370XtCatAa11P.10.000016
ORF1ab/nsp3370S370NTCAAAT11P.10.000016
ORF1ab/nsp3370S370KTCaAAa11P.10.000016
ORF1ab/nsp3370S370FtCAtTT11P.10.000016
ORF1ab/nsp3370S370del1tCat-a11P.1.10.000318
ORF1ab/nsp3370S370del1tCat-a11P.1.120.000484
ORF1ab/nsp3370S370del1tCat-a11P.1.170.000162
ORF1ab/nsp3370S370del1tCat-a11P.1.70.000319
ORF1ab/nsp3370S370StcAtcT11Q.10.000126