CoV-GLUE Mutation

CoV-GLUE Mutation: ORF = ORF1ab/nsp3 : CodonNum = 364

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORF	CodonNum	Mut	ORF1abMut	MutType	RefCodon	MutCodon	AACount	CodonCount	CodonProp	Genome Position
ORF1ab/nsp3	364	L364L	L1182L	syn	ctC	ctT	12770	12706	0.994988	3809-3811
ORF1ab/nsp3	364	L364L	L1182L	syn	ctC	ctA	12770	59	0.0046202	3809-3811
ORF1ab/nsp3	364	L364L	L1182L	syn	ctC	ctG	12770	5	0.000391543	3809-3811
ORF1ab/nsp3	364	L364F	L1182F	nonsyn	Ctc	Ttc	6481	6469	0.998148	3809-3811
ORF1ab/nsp3	364	L364F	L1182F	nonsyn	CtC	TtT	6481	12	0.00185157	3809-3811
ORF1ab/nsp3	364	L364I	L1182I	nonsyn	Ctc	Atc	111	110	0.990991	3809-3811
ORF1ab/nsp3	364	L364I	L1182I	nonsyn	CtC	AtT	111	1	0.00900901	3809-3811
ORF1ab/nsp3	364	L364R	L1182R	nonsyn	cTc	cGc	95	95	1	3809-3811
ORF1ab/nsp3	364	L364del1	L1182del1	del	ctC	ct-	79	79	1	3809-3811
ORF1ab/nsp3	364	L364P	L1182P	nonsyn	cTc	cCc	73	72	0.986301	3809-3811
ORF1ab/nsp3	364	L364P	L1182P	nonsyn	cTC	cCT	73	1	0.0136986	3809-3811
ORF1ab/nsp3	364	L364del	L1182del	del	CTC	---	49	49	1	3809-3811
ORF1ab/nsp3	364	L364H	L1182H	nonsyn	cTc	cAc	28	27	0.964286	3809-3811
ORF1ab/nsp3	364	L364H	L1182H	nonsyn	cTC	cAT	28	1	0.0357143	3809-3811
ORF1ab/nsp3	364	L364S	L1182S	nonsyn	CTc	AGc	20	18	0.9	3809-3811
ORF1ab/nsp3	364	L364S	L1182S	nonsyn	CTC	TCT	20	1	0.05	3809-3811
ORF1ab/nsp3	364	L364S	L1182S	nonsyn	CTc	TCc	20	1	0.05	3809-3811
ORF1ab/nsp3	364	L364V	L1182V	nonsyn	Ctc	Gtc	17	17	1	3809-3811
ORF1ab/nsp3	364	L364del2	L1182del2	del	cTC	c--	5	3	0.6	3809-3811
ORF1ab/nsp3	364	L364del2	L1182del2	del	CTC	--N	5	2	0.4	3809-3811

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORF	CodonNum	Mut	RefCodon	MutCodon	CodonCount	AACount	Lineage	LineageCodonProp
ORF1ab/nsp3	364	L364L	ctC	ctT	12706	12770	All	0.00243
ORF1ab/nsp3	364	L364L	ctC	ctA	59	12770	All	0.000011
ORF1ab/nsp3	364	L364L	ctC	ctG	5	12770	All	0.000001
ORF1ab/nsp3	364	L364F	Ctc	Ttc	6469	6481	All	0.001237
ORF1ab/nsp3	364	L364F	CtC	TtT	12	6481	All	0.000002
ORF1ab/nsp3	364	L364L	ctC	ctT	5769	5771	B.1.617.2	0.021723
ORF1ab/nsp3	364	L364L	ctC	ctA	2	5771	B.1.617.2	0.000008
ORF1ab/nsp3	364	L364L	ctC	ctT	4300	4300	AY.98	0.339679
ORF1ab/nsp3	364	L364F	Ctc	Ttc	2944	2952	AY.69	0.549561
ORF1ab/nsp3	364	L364F	CtC	TtT	8	2952	AY.69	0.001493
ORF1ab/nsp3	364	L364F	Ctc	Ttc	1521	1521	B.1.1.7	0.001362
ORF1ab/nsp3	364	L364L	ctC	ctT	1332	1369	B.1.1.7	0.001192
ORF1ab/nsp3	364	L364L	ctC	ctA	37	1369	B.1.1.7	0.000033
ORF1ab/nsp3	364	L364F	Ctc	Ttc	852	852	AY.25	0.005125
ORF1ab/nsp3	364	L364F	Ctc	Ttc	200	200	AY.43	0.000886
ORF1ab/nsp3	364	L364F	Ctc	Ttc	179	179	AY.5	0.003696
ORF1ab/nsp3	364	L364L	ctC	ctT	119	120	AY.4	0.000185
ORF1ab/nsp3	364	L364L	ctC	ctA	1	120	AY.4	0.000002
ORF1ab/nsp3	364	L364I	Ctc	Atc	110	111	All	0.000021
ORF1ab/nsp3	364	L364I	CtC	AtT	1	111	All	0
ORF1ab/nsp3	364	L364L	ctC	ctT	110	110	AY.54	0.010488
ORF1ab/nsp3	364	L364R	cTc	cGc	95	95	All	0.000018
ORF1ab/nsp3	364	L364F	Ctc	Ttc	92	92	AY.23	0.006417
ORF1ab/nsp3	364	L364del1	ctC	ct-	79	79	All	0.000015
ORF1ab/nsp3	364	L364L	ctC	ctT	76	76	AY.44	0.000463
ORF1ab/nsp3	364	L364P	cTc	cCc	72	73	All	0.000014
ORF1ab/nsp3	364	L364P	cTC	cCT	1	73	All	0
ORF1ab/nsp3	364	L364F	Ctc	Ttc	72	72	AY.4	0.000112
ORF1ab/nsp3	364	L364L	ctC	ctT	68	69	B.1	0.000623
ORF1ab/nsp3	364	L364L	ctC	ctA	1	69	B.1	0.000009
ORF1ab/nsp3	364	L364del1	ctC	ct-	66	66	B.1.1.7	0.000059
ORF1ab/nsp3	364	L364L	ctC	ctT	51	54	AY.103	0.000317
ORF1ab/nsp3	364	L364L	ctC	ctA	3	54	AY.103	0.000019
ORF1ab/nsp3	364	L364F	Ctc	Ttc	48	50	B.1.617.2	0.000181
ORF1ab/nsp3	364	L364F	CtC	TtT	2	50	B.1.617.2	0.000008
ORF1ab/nsp3	364	L364del	CTC	---	49	49	All	0.000009
ORF1ab/nsp3	364	L364L	ctC	ctT	45	45	B.1.2	0.000396
ORF1ab/nsp3	364	L364F	Ctc	Ttc	43	43	B.1	0.000394
ORF1ab/nsp3	364	L364F	Ctc	Ttc	41	41	AY.44	0.00025
ORF1ab/nsp3	364	L364F	Ctc	Ttc	39	39	B.1.526	0.000917
ORF1ab/nsp3	364	L364L	ctC	ctT	38	38	B.1.462	0.275362
ORF1ab/nsp3	364	L364L	ctC	ctT	33	36	AY.3	0.000328
ORF1ab/nsp3	364	L364L	ctC	ctA	3	36	AY.3	0.00003
ORF1ab/nsp3	364	L364F	Ctc	Ttc	34	34	B.1.2	0.000299
ORF1ab/nsp3	364	L364L	ctC	ctT	33	33	AY.43	0.000146
ORF1ab/nsp3	364	L364L	ctC	ctT	31	31	AY.5.3	0.010459
ORF1ab/nsp3	364	L364L	ctC	ctT	30	31	B.1.1	0.000544
ORF1ab/nsp3	364	L364L	ctC	ctA	1	31	B.1.1	0.000018
ORF1ab/nsp3	364	L364L	ctC	ctT	30	31	B.1.160	0.000936
ORF1ab/nsp3	364	L364L	ctC	ctA	1	31	B.1.160	0.000031
ORF1ab/nsp3	364	L364R	cTc	cGc	30	30	B.1.617.2	0.000113
ORF1ab/nsp3	364	L364L	ctC	ctT	29	29	B.1.1.40	1
ORF1ab/nsp3	364	L364H	cTc	cAc	27	28	All	0.000005
ORF1ab/nsp3	364	L364H	cTC	cAT	1	28	All	0
ORF1ab/nsp3	364	L364L	ctC	ctT	27	27	AY.102	0.000716
ORF1ab/nsp3	364	L364L	ctC	ctT	27	27	AY.60	0.025328
ORF1ab/nsp3	364	L364F	Ctc	Ttc	27	27	B.1.1	0.00049
ORF1ab/nsp3	364	L364L	ctC	ctT	26	26	AY.5	0.000537
ORF1ab/nsp3	364	L364F	Ctc	Ttc	26	26	P.1	0.00041
ORF1ab/nsp3	364	L364F	Ctc	Ttc	25	25	AY.103	0.000155
ORF1ab/nsp3	364	L364F	Ctc	Ttc	25	25	AY.39	0.000618
ORF1ab/nsp3	364	L364I	Ctc	Atc	22	23	B.1.617.2	0.000083
ORF1ab/nsp3	364	L364I	CtC	AtT	1	23	B.1.617.2	0.000004
ORF1ab/nsp3	364	L364L	ctC	ctT	22	22	AY.39	0.000544
ORF1ab/nsp3	364	L364H	cTc	cAc	22	22	P.1	0.000347
ORF1ab/nsp3	364	L364L	ctC	ctT	22	22	P.1	0.000347
ORF1ab/nsp3	364	L364F	Ctc	Ttc	21	21	B.1.1.519	0.000834
ORF1ab/nsp3	364	L364S	CTc	AGc	18	20	All	0.000003
ORF1ab/nsp3	364	L364S	CTC	TCT	1	20	All	0
ORF1ab/nsp3	364	L364S	CTc	TCc	1	20	All	0
ORF1ab/nsp3	364	L364L	ctC	ctT	18	18	AY.26	0.00051
ORF1ab/nsp3	364	L364V	Ctc	Gtc	17	17	All	0.000003
ORF1ab/nsp3	364	L364I	Ctc	Atc	17	17	AY.25	0.000102
ORF1ab/nsp3	364	L364L	ctC	ctT	17	17	B.1.258.17	0.001768
ORF1ab/nsp3	364	L364L	ctC	ctT	14	16	AY.25	0.000084
ORF1ab/nsp3	364	L364L	ctC	ctA	2	16	AY.25	0.000012
ORF1ab/nsp3	364	L364P	cTc	cCc	15	15	AY.114	0.003467
ORF1ab/nsp3	364	L364L	ctC	ctT	15	15	AY.46	0.001561
ORF1ab/nsp3	364	L364L	ctC	ctT	14	14	AY.100	0.000644
ORF1ab/nsp3	364	L364F	Ctc	Ttc	14	14	AY.3	0.000139
ORF1ab/nsp3	364	L364F	Ctc	Ttc	13	13	AY.33	0.000868
ORF1ab/nsp3	364	L364I	Ctc	Atc	12	12	AY.23	0.000837
ORF1ab/nsp3	364	L364P	cTc	cCc	12	12	AY.4	0.000019
ORF1ab/nsp3	364	L364I	Ctc	Atc	12	12	B.1.1.7	0.000011
ORF1ab/nsp3	364	L364L	ctC	ctT	11	11	AY.114	0.002542
ORF1ab/nsp3	364	L364F	Ctc	Ttc	11	11	AY.29	0.000174
ORF1ab/nsp3	364	L364F	Ctc	Ttc	11	11	AY.9	0.000744
ORF1ab/nsp3	364	L364R	cTc	cGc	11	11	B.1.1.7	0.00001
ORF1ab/nsp3	364	L364L	ctC	ctT	11	11	B.1.177	0.000145
ORF1ab/nsp3	364	L364F	Ctc	Ttc	11	11	B.1.177	0.000145
ORF1ab/nsp3	364	L364F	Ctc	Ttc	11	11	B.1.243	0.000765
ORF1ab/nsp3	364	L364L	ctC	ctT	11	11	B.1.621.1	0.005564
ORF1ab/nsp3	364	L364L	ctC	ctT	10	10	AY.32	0.005325
ORF1ab/nsp3	364	L364L	ctC	ctT	10	10	AY.98.1	0.000484
ORF1ab/nsp3	364	L364V	Ctc	Gtc	10	10	B.1.617.2	0.000038
ORF1ab/nsp3	364	L364P	cTc	cCc	9	9	AY.103	0.000056
ORF1ab/nsp3	364	L364L	ctC	ctT	9	9	B.1.234	0.001187
ORF1ab/nsp3	364	L364L	ctC	ctT	9	9	B.1.596	0.000784
ORF1ab/nsp3	364	L364S	CTc	AGc	9	9	B.1.617.2	0.000034
ORF1ab/nsp3	364	L364L	ctC	ctT	9	9	B.1.91	0.018672
ORF1ab/nsp3	364	L364L	ctC	ctT	9	9	P.1.7	0.002874
ORF1ab/nsp3	364	L364R	cTc	cGc	8	8	AY.25	0.000048
ORF1ab/nsp3	364	L364L	ctC	ctT	8	8	B.1.1.317	0.003294
ORF1ab/nsp3	364	L364L	ctC	ctT	8	8	B.1.1.519	0.000318
ORF1ab/nsp3	364	L364del	CTC	---	8	8	B.1.1.7	0.000007
ORF1ab/nsp3	364	L364R	cTc	cGc	8	8	B.1.2	0.00007
ORF1ab/nsp3	364	L364I	Ctc	Atc	7	7	AY.20	0.000272
ORF1ab/nsp3	364	L364R	cTc	cGc	7	7	AY.20	0.000272
ORF1ab/nsp3	364	L364I	Ctc	Atc	7	7	AY.4	0.000011
ORF1ab/nsp3	364	L364R	cTc	cGc	7	7	AY.43	0.000031
ORF1ab/nsp3	364	L364L	ctC	ctT	7	7	AY.45	0.000852
ORF1ab/nsp3	364	L364F	Ctc	Ttc	7	7	AY.47	0.000218
ORF1ab/nsp3	364	L364L	ctC	ctT	7	7	AY.9.2	0.000257
ORF1ab/nsp3	364	L364L	ctC	ctT	7	7	B	0.000895
ORF1ab/nsp3	364	L364L	ctC	ctT	7	7	B.1.110.3	0.005029
ORF1ab/nsp3	364	L364F	Ctc	Ttc	7	7	B.1.525	0.000792
ORF1ab/nsp3	364	L364F	Ctc	Ttc	6	6	AY.120	0.000223
ORF1ab/nsp3	364	L364L	ctC	ctT	5	6	AY.29	0.000079
ORF1ab/nsp3	364	L364L	ctC	ctA	1	6	AY.29	0.000016
ORF1ab/nsp3	364	L364L	ctC	ctT	6	6	AY.35	0.001398
ORF1ab/nsp3	364	L364F	Ctc	Ttc	6	6	AY.54	0.000572
ORF1ab/nsp3	364	L364L	ctC	ctT	6	6	AY.74	0.000694
ORF1ab/nsp3	364	L364F	Ctc	Ttc	6	6	B.1.1.369	0.002677
ORF1ab/nsp3	364	L364L	ctC	ctT	6	6	B.1.177.60	0.001311
ORF1ab/nsp3	364	L364del	CTC	---	6	6	B.1.2	0.000053
ORF1ab/nsp3	364	L364L	ctC	ctT	6	6	B.1.499	0.006303
ORF1ab/nsp3	364	L364del2	cTC	c--	3	5	All	0.000001
ORF1ab/nsp3	364	L364del2	CTC	--N	2	5	All	0
ORF1ab/nsp3	364	L364F	Ctc	Ttc	5	5	AY.102	0.000133
ORF1ab/nsp3	364	L364S	CTc	AGc	5	5	AY.103	0.000031
ORF1ab/nsp3	364	L364L	ctC	ctT	5	5	AY.106	0.001674
ORF1ab/nsp3	364	L364L	ctC	ctT	5	5	AY.117	0.000423
ORF1ab/nsp3	364	L364L	ctC	ctT	5	5	AY.119	0.000177
ORF1ab/nsp3	364	L364F	Ctc	Ttc	5	5	AY.119	0.000177
ORF1ab/nsp3	364	L364L	ctC	ctT	5	5	AY.20	0.000194
ORF1ab/nsp3	364	L364L	ctC	ctT	5	5	AY.23	0.000349
ORF1ab/nsp3	364	L364I	Ctc	Atc	5	5	AY.43	0.000022
ORF1ab/nsp3	364	L364R	cTc	cGc	5	5	AY.44	0.00003
ORF1ab/nsp3	364	L364L	ctC	ctT	5	5	AY.61	0.000524
ORF1ab/nsp3	364	L364L	ctC	ctG	5	5	B.1.329	0.003038
ORF1ab/nsp3	364	L364F	Ctc	Ttc	5	5	B.1.351	0.000149
ORF1ab/nsp3	364	L364F	Ctc	Ttc	5	5	B.1.429	0.000118
ORF1ab/nsp3	364	L364F	Ctc	Ttc	5	5	B.1.596	0.000436
ORF1ab/nsp3	364	L364L	ctC	ctT	5	5	Q.8	0.000825
ORF1ab/nsp3	364	L364I	Ctc	Atc	4	4	AY.102	0.000106
ORF1ab/nsp3	364	L364I	Ctc	Atc	4	4	AY.103	0.000025
ORF1ab/nsp3	364	L364L	ctC	ctT	4	4	AY.108	0.00441
ORF1ab/nsp3	364	L364F	Ctc	Ttc	4	4	AY.117	0.000338
ORF1ab/nsp3	364	L364F	Ctc	Ttc	4	4	AY.118	0.000251
ORF1ab/nsp3	364	L364F	Ctc	Ttc	4	4	AY.36	0.000593
ORF1ab/nsp3	364	L364L	ctC	ctT	4	4	AY.4.2	0.000087
ORF1ab/nsp3	364	L364V	Ctc	Gtc	4	4	AY.61	0.000419
ORF1ab/nsp3	364	L364L	ctC	ctT	4	4	AY.75	0.000224
ORF1ab/nsp3	364	L364L	ctC	ctT	4	4	AY.77	0.00451
ORF1ab/nsp3	364	L364F	Ctc	Ttc	4	4	AY.83	0.006897
ORF1ab/nsp3	364	L364L	ctC	ctT	4	4	AY.9.1	0.000335
ORF1ab/nsp3	364	L364F	Ctc	Ttc	4	4	AY.9.2	0.000147
ORF1ab/nsp3	364	L364R	cTc	cGc	4	4	B.1	0.000037
ORF1ab/nsp3	364	L364F	Ctc	Ttc	4	4	B.1.177.32	0.005398
ORF1ab/nsp3	364	L364L	ctC	ctT	4	4	B.1.351	0.000119
ORF1ab/nsp3	364	L364del	CTC	---	4	4	B.1.526	0.000094
ORF1ab/nsp3	364	L364L	ctC	ctT	4	4	B.1.526	0.000094
ORF1ab/nsp3	364	L364L	ctC	ctT	4	4	P.2	0.000747
ORF1ab/nsp3	364	L364F	Ctc	Ttc	4	4	Q.1	0.000505
ORF1ab/nsp3	364	L364R	cTc	cGc	3	3	AY.100	0.000138
ORF1ab/nsp3	364	L364F	Ctc	Ttc	3	3	AY.20	0.000117
ORF1ab/nsp3	364	L364F	Ctc	Ttc	3	3	AY.26	0.000085
ORF1ab/nsp3	364	L364del	CTC	---	3	3	AY.4	0.000005
ORF1ab/nsp3	364	L364L	ctC	ctT	3	3	AY.4.4	0.001227
ORF1ab/nsp3	364	L364F	Ctc	Ttc	3	3	AY.42	0.000121
ORF1ab/nsp3	364	L364P	cTc	cCc	3	3	AY.43	0.000013
ORF1ab/nsp3	364	L364L	ctC	ctT	3	3	AY.46.6	0.000217
ORF1ab/nsp3	364	L364F	Ctc	Ttc	3	3	AY.56	0.004815
ORF1ab/nsp3	364	L364L	ctC	ctT	3	3	AY.6	0.000123
ORF1ab/nsp3	364	L364L	ctC	ctT	3	3	AY.73	0.001996
ORF1ab/nsp3	364	L364F	Ctc	Ttc	3	3	AY.98	0.000237
ORF1ab/nsp3	364	L364F	Ctc	Ttc	3	3	AY.99.2	0.000276
ORF1ab/nsp3	364	L364del	CTC	---	3	3	B.1	0.000027
ORF1ab/nsp3	364	L364F	Ctc	Ttc	3	3	B.1.1.214	0.000166
ORF1ab/nsp3	364	L364F	Ctc	Ttc	3	3	B.1.1.28	0.000934
ORF1ab/nsp3	364	L364F	Ctc	Ttc	3	3	B.1.1.318	0.000905
ORF1ab/nsp3	364	L364L	ctC	ctT	3	3	B.1.1.33	0.001263
ORF1ab/nsp3	364	L364L	ctC	ctT	3	3	B.1.1.368	0.009259
ORF1ab/nsp3	364	L364L	ctC	ctT	3	3	B.1.177.65	0.001996
ORF1ab/nsp3	364	L364L	ctC	ctT	3	3	B.1.177.7	0.000495
ORF1ab/nsp3	364	L364del1	ctC	ct-	3	3	B.1.177.82	0.001432
ORF1ab/nsp3	364	L364P	cTc	cCc	3	3	B.1.2	0.000026
ORF1ab/nsp3	364	L364del1	ctC	ct-	3	3	B.1.351	0.000089
ORF1ab/nsp3	364	L364L	ctC	ctT	3	3	B.1.429	0.000071
ORF1ab/nsp3	364	L364L	ctC	ctT	3	3	B.1.525	0.000339
ORF1ab/nsp3	364	L364del	CTC	---	3	3	B.1.596	0.000261
ORF1ab/nsp3	364	L364L	ctC	ctT	3	3	B.1.617.1	0.000387
ORF1ab/nsp3	364	L364P	cTc	cCc	3	3	D.2	0.000225
ORF1ab/nsp3	364	L364L	ctC	ctT	3	3	P.1.15	0.000697
ORF1ab/nsp3	364	L364L	ctC	ctT	3	3	R.1	0.00027
ORF1ab/nsp3	364	L364F	CtC	TtT	1	2		0.055556
ORF1ab/nsp3	364	L364P	cTC	cCT	1	2		0.055556
ORF1ab/nsp3	364	L364S	CTc	TCc	1	2		0.055556
ORF1ab/nsp3	364	L364F	Ctc	Ttc	1	2		0.055556
ORF1ab/nsp3	364	L364P	cTc	cCc	1	2		0.055556
ORF1ab/nsp3	364	L364S	CTC	TCT	1	2		0.055556
ORF1ab/nsp3	364	L364F	Ctc	Ttc	2	2	AY.100	0.000092
ORF1ab/nsp3	364	L364F	Ctc	Ttc	2	2	AY.107	0.000932
ORF1ab/nsp3	364	L364L	ctC	ctT	2	2	AY.109	0.001479
ORF1ab/nsp3	364	L364F	Ctc	Ttc	2	2	AY.110	0.000225
ORF1ab/nsp3	364	L364L	ctC	ctT	2	2	AY.110	0.000225
ORF1ab/nsp3	364	L364F	Ctc	Ttc	2	2	AY.113	0.000285
ORF1ab/nsp3	364	L364I	Ctc	Atc	2	2	AY.117	0.000169
ORF1ab/nsp3	364	L364F	Ctc	Ttc	2	2	AY.16.1	0.00094
ORF1ab/nsp3	364	L364L	ctC	ctT	1	2	AY.27	0.000065
ORF1ab/nsp3	364	L364L	ctC	ctA	1	2	AY.27	0.000065
ORF1ab/nsp3	364	L364P	cTc	cCc	2	2	AY.29.1	0.000441
ORF1ab/nsp3	364	L364L	ctC	ctT	2	2	AY.30	0.000791
ORF1ab/nsp3	364	L364L	ctC	ctT	2	2	AY.34	0.000194
ORF1ab/nsp3	364	L364R	cTc	cGc	2	2	AY.4	0.000003
ORF1ab/nsp3	364	L364F	Ctc	Ttc	2	2	AY.4.2	0.000043
ORF1ab/nsp3	364	L364L	ctC	ctT	2	2	AY.40	0.001929
ORF1ab/nsp3	364	L364L	ctC	ctT	2	2	AY.42	0.00008
ORF1ab/nsp3	364	L364del1	ctC	ct-	2	2	AY.52	0.001629
ORF1ab/nsp3	364	L364L	ctC	ctT	1	2	AY.52	0.000814
ORF1ab/nsp3	364	L364L	ctC	ctA	1	2	AY.52	0.000814
ORF1ab/nsp3	364	L364L	ctC	ctA	1	2	AY.55	0.000917
ORF1ab/nsp3	364	L364L	ctC	ctT	1	2	AY.55	0.000917
ORF1ab/nsp3	364	L364L	ctC	ctT	2	2	AY.68	0.000547
ORF1ab/nsp3	364	L364L	ctC	ctT	2	2	AY.71	0.00095
ORF1ab/nsp3	364	L364L	ctC	ctT	2	2	AY.80	0.002257
ORF1ab/nsp3	364	L364L	ctC	ctT	2	2	AY.82	0.002714
ORF1ab/nsp3	364	L364L	ctC	ctT	2	2	AY.84	0.000875
ORF1ab/nsp3	364	L364L	ctC	ctT	2	2	AY.86	0.00166
ORF1ab/nsp3	364	L364L	ctC	ctT	2	2	AY.87	0.001665
ORF1ab/nsp3	364	L364L	ctC	ctT	2	2	AY.88	0.001768
ORF1ab/nsp3	364	L364P	cTc	cCc	2	2	AY.98.1	0.000097
ORF1ab/nsp3	364	L364L	ctC	ctT	2	2	AY.99	0.002099
ORF1ab/nsp3	364	L364L	ctC	ctT	2	2	AY.99.2	0.000184
ORF1ab/nsp3	364	L364P	cTc	cCc	2	2	B.1	0.000018
ORF1ab/nsp3	364	L364P	cTc	cCc	2	2	B.1.1	0.000036
ORF1ab/nsp3	364	L364del	CTC	---	2	2	B.1.1	0.000036
ORF1ab/nsp3	364	L364F	Ctc	Ttc	2	2	B.1.1.207	0.002364
ORF1ab/nsp3	364	L364L	ctC	ctT	2	2	B.1.1.214	0.000111
ORF1ab/nsp3	364	L364R	cTc	cGc	2	2	B.1.1.277	0.001517
ORF1ab/nsp3	364	L364L	ctC	ctT	2	2	B.1.1.294	0.002532
ORF1ab/nsp3	364	L364F	Ctc	Ttc	2	2	B.1.1.301	0.002358
ORF1ab/nsp3	364	L364F	Ctc	Ttc	2	2	B.1.1.317	0.000823
ORF1ab/nsp3	364	L364F	Ctc	Ttc	2	2	B.1.1.326	0.003521
ORF1ab/nsp3	364	L364P	cTc	cCc	2	2	B.1.1.519	0.000079
ORF1ab/nsp3	364	L364L	ctC	ctT	2	2	B.1.1.52	0.02439
ORF1ab/nsp3	364	L364P	cTc	cCc	2	2	B.1.1.7	0.000002
ORF1ab/nsp3	364	L364L	ctC	ctT	2	2	B.1.139	0.001466
ORF1ab/nsp3	364	L364del1	ctC	ct-	2	2	B.1.160	0.000062
ORF1ab/nsp3	364	L364L	ctC	ctT	2	2	B.1.160.16	0.001859
ORF1ab/nsp3	364	L364L	ctC	ctT	2	2	B.1.160.17	0.003401
ORF1ab/nsp3	364	L364P	cTc	cCc	2	2	B.1.177	0.000026
ORF1ab/nsp3	364	L364F	Ctc	Ttc	2	2	B.1.177.21	0.000153
ORF1ab/nsp3	364	L364F	Ctc	Ttc	2	2	B.1.177.60	0.000437
ORF1ab/nsp3	364	L364L	ctC	ctT	2	2	B.1.177.73	0.001133
ORF1ab/nsp3	364	L364L	ctC	ctT	2	2	B.1.177.75	0.002081
ORF1ab/nsp3	364	L364L	ctC	ctT	2	2	B.1.206	0.001631
ORF1ab/nsp3	364	L364P	cTc	cCc	2	2	B.1.221	0.000142
ORF1ab/nsp3	364	L364I	Ctc	Atc	2	2	B.1.234	0.000264
ORF1ab/nsp3	364	L364L	ctC	ctT	2	2	B.1.243	0.000139
ORF1ab/nsp3	364	L364F	Ctc	Ttc	2	2	B.1.258.17	0.000208
ORF1ab/nsp3	364	L364L	ctC	ctT	2	2	B.1.258.3	0.00335
ORF1ab/nsp3	364	L364F	Ctc	Ttc	2	2	B.1.36.1	0.002281
ORF1ab/nsp3	364	L364F	Ctc	Ttc	2	2	B.1.36.29	0.001035
ORF1ab/nsp3	364	L364L	ctC	ctT	2	2	B.1.409	0.001563
ORF1ab/nsp3	364	L364L	ctC	ctT	2	2	B.1.413	0.008511
ORF1ab/nsp3	364	L364del	CTC	---	2	2	B.1.429	0.000047
ORF1ab/nsp3	364	L364F	Ctc	Ttc	2	2	B.1.438.1	0.000215
ORF1ab/nsp3	364	L364L	ctC	ctA	1	2	B.1.438.1	0.000107
ORF1ab/nsp3	364	L364L	ctC	ctT	1	2	B.1.438.1	0.000107
ORF1ab/nsp3	364	L364F	Ctc	Ttc	2	2	B.1.575	0.000607
ORF1ab/nsp3	364	L364del	CTC	---	2	2	B.1.621	0.000177
ORF1ab/nsp3	364	L364F	Ctc	Ttc	2	2	B.1.621	0.000177
ORF1ab/nsp3	364	L364F	Ctc	Ttc	2	2	B.1.637	0.000146
ORF1ab/nsp3	364	L364L	ctC	ctT	2	2	C.1	0.004785
ORF1ab/nsp3	364	L364P	cTc	cCc	2	2	C.16	0.002121
ORF1ab/nsp3	364	L364F	Ctc	Ttc	2	2	C.36.3	0.001134
ORF1ab/nsp3	364	L364L	ctC	ctT	2	2	C.37	0.000232
ORF1ab/nsp3	364	L364F	Ctc	Ttc	2	2	D.2	0.00015
ORF1ab/nsp3	364	L364L	ctC	ctT	2	2	D.2	0.00015
ORF1ab/nsp3	364	L364del	CTC	---	2	2	P.1.12	0.000968
ORF1ab/nsp3	364	L364F	Ctc	Ttc	2	2	P.1.14	0.000096
ORF1ab/nsp3	364	L364F	Ctc	Ttc	2	2	P.1.15	0.000465
ORF1ab/nsp3	364	L364F	Ctc	Ttc	2	2	P.1.7	0.000639
ORF1ab/nsp3	364	L364F	Ctc	Ttc	2	2	P.2	0.000373
ORF1ab/nsp3	364	L364F	Ctc	Ttc	2	2	Q.3	0.00029
ORF1ab/nsp3	364	L364L	ctC	ctT	1	1		0.055556
ORF1ab/nsp3	364	L364del	CTC	---	1	1	A	0.000387
ORF1ab/nsp3	364	L364I	Ctc	Atc	1	1	A.1	0.000282
ORF1ab/nsp3	364	L364L	ctC	ctT	1	1	A.1	0.000282
ORF1ab/nsp3	364	L364F	Ctc	Ttc	1	1	A.2	0.000662
ORF1ab/nsp3	364	L364L	ctC	ctT	1	1	A.5	0.001923
ORF1ab/nsp3	364	L364F	Ctc	Ttc	1	1	AD.2	0.000219
ORF1ab/nsp3	364	L364F	Ctc	Ttc	1	1	AY.1	0.000396
ORF1ab/nsp3	364	L364R	cTc	cGc	1	1	AY.102	0.000027
ORF1ab/nsp3	364	L364H	cTc	cAc	1	1	AY.103	0.000006
ORF1ab/nsp3	364	L364L	ctC	ctT	1	1	AY.104	0.001984
ORF1ab/nsp3	364	L364L	ctC	ctT	1	1	AY.105	0.000643
ORF1ab/nsp3	364	L364L	ctC	ctT	1	1	AY.107	0.000466
ORF1ab/nsp3	364	L364L	ctC	ctT	1	1	AY.111	0.000183
ORF1ab/nsp3	364	L364L	ctC	ctT	1	1	AY.116.1	0.000311
ORF1ab/nsp3	364	L364R	cTc	cGc	1	1	AY.117	0.000085
ORF1ab/nsp3	364	L364P	cTc	cCc	1	1	AY.118	0.000063
ORF1ab/nsp3	364	L364S	CTc	AGc	1	1	AY.119	0.000035
ORF1ab/nsp3	364	L364F	Ctc	Ttc	1	1	AY.12	0.000316
ORF1ab/nsp3	364	L364del	CTC	---	1	1	AY.120	0.000037
ORF1ab/nsp3	364	L364I	Ctc	Atc	1	1	AY.120	0.000037
ORF1ab/nsp3	364	L364F	Ctc	Ttc	1	1	AY.121	0.000135
ORF1ab/nsp3	364	L364L	ctC	ctT	1	1	AY.121	0.000135
ORF1ab/nsp3	364	L364F	Ctc	Ttc	1	1	AY.15	0.002222
ORF1ab/nsp3	364	L364L	ctC	ctT	1	1	AY.16	0.00038
ORF1ab/nsp3	364	L364V	Ctc	Gtc	1	1	AY.16.1	0.00047
ORF1ab/nsp3	364	L364L	ctC	ctT	1	1	AY.16.1	0.00047
ORF1ab/nsp3	364	L364del	CTC	---	1	1	AY.16.1	0.00047
ORF1ab/nsp3	364	L364del2	cTC	c--	1	1	AY.16.1	0.00047
ORF1ab/nsp3	364	L364L	ctC	ctT	1	1	AY.24	0.000431
ORF1ab/nsp3	364	L364R	cTc	cGc	1	1	AY.26	0.000028
ORF1ab/nsp3	364	L364R	cTc	cGc	1	1	AY.29	0.000016
ORF1ab/nsp3	364	L364L	ctC	ctT	1	1	AY.29.1	0.000221
ORF1ab/nsp3	364	L364del	CTC	---	1	1	AY.3	0.00001
ORF1ab/nsp3	364	L364L	ctC	ctT	1	1	AY.3.1	0.000085
ORF1ab/nsp3	364	L364H	cTc	cAc	1	1	AY.30	0.000396
ORF1ab/nsp3	364	L364L	ctC	ctT	1	1	AY.37	0.000316
ORF1ab/nsp3	364	L364L	ctC	ctT	1	1	AY.38	0.000499
ORF1ab/nsp3	364	L364S	CTc	AGc	1	1	AY.39	0.000025
ORF1ab/nsp3	364	L364I	Ctc	Atc	1	1	AY.39	0.000025
ORF1ab/nsp3	364	L364del	CTC	---	1	1	AY.43	0.000004
ORF1ab/nsp3	364	L364P	cTc	cCc	1	1	AY.44	0.000006
ORF1ab/nsp3	364	L364F	Ctc	Ttc	1	1	AY.45	0.000122
ORF1ab/nsp3	364	L364P	cTc	cCc	1	1	AY.45	0.000122
ORF1ab/nsp3	364	L364F	Ctc	Ttc	1	1	AY.46.4	0.000165
ORF1ab/nsp3	364	L364L	ctC	ctT	1	1	AY.46.5	0.000198
ORF1ab/nsp3	364	L364I	Ctc	Atc	1	1	AY.47	0.000031
ORF1ab/nsp3	364	L364L	ctC	ctT	1	1	AY.47	0.000031
ORF1ab/nsp3	364	L364S	CTc	AGc	1	1	AY.5	0.000021
ORF1ab/nsp3	364	L364L	ctC	ctT	1	1	AY.5.4	0.000277
ORF1ab/nsp3	364	L364R	cTc	cGc	1	1	AY.50	0.000799
ORF1ab/nsp3	364	L364F	Ctc	Ttc	1	1	AY.53	0.000288
ORF1ab/nsp3	364	L364V	Ctc	Gtc	1	1	AY.54	0.000095
ORF1ab/nsp3	364	L364R	cTc	cGc	1	1	AY.55	0.000917
ORF1ab/nsp3	364	L364I	Ctc	Atc	1	1	AY.61	0.000105
ORF1ab/nsp3	364	L364L	ctC	ctT	1	1	AY.65	0.000533
ORF1ab/nsp3	364	L364L	ctC	ctT	1	1	AY.7	0.000196
ORF1ab/nsp3	364	L364F	Ctc	Ttc	1	1	AY.72	0.001361
ORF1ab/nsp3	364	L364F	Ctc	Ttc	1	1	AY.75	0.000056
ORF1ab/nsp3	364	L364L	ctC	ctT	1	1	AY.78	0.001541
ORF1ab/nsp3	364	L364L	ctC	ctT	1	1	AY.79	0.001211
ORF1ab/nsp3	364	L364L	ctC	ctT	1	1	AY.85	0.000427
ORF1ab/nsp3	364	L364L	ctC	ctT	1	1	AY.9	0.000068
ORF1ab/nsp3	364	L364P	cTc	cCc	1	1	AY.9.1	0.000084
ORF1ab/nsp3	364	L364L	ctC	ctT	1	1	AY.90	0.000684
ORF1ab/nsp3	364	L364L	ctC	ctT	1	1	AY.92	0.000287
ORF1ab/nsp3	364	L364F	Ctc	Ttc	1	1	AY.94	0.000443
ORF1ab/nsp3	364	L364H	cTc	cAc	1	1	AY.98.1	0.000048
ORF1ab/nsp3	364	L364F	CtC	TtT	1	1	B	0.000128
ORF1ab/nsp3	364	L364del2	CTC	--N	1	1	B.1	0.000009
ORF1ab/nsp3	364	L364H	cTc	cAc	1	1	B.1	0.000009
ORF1ab/nsp3	364	L364H	cTc	cAc	1	1	B.1.1	0.000018
ORF1ab/nsp3	364	L364I	Ctc	Atc	1	1	B.1.1	0.000018
ORF1ab/nsp3	364	L364R	cTc	cGc	1	1	B.1.1	0.000018
ORF1ab/nsp3	364	L364L	ctC	ctT	1	1	B.1.1.1	0.000327
ORF1ab/nsp3	364	L364F	Ctc	Ttc	1	1	B.1.1.141	0.002012
ORF1ab/nsp3	364	L364L	ctC	ctT	1	1	B.1.1.176	0.000439
ORF1ab/nsp3	364	L364L	ctC	ctT	1	1	B.1.1.203	0.016949
ORF1ab/nsp3	364	L364P	cTc	cCc	1	1	B.1.1.207	0.001182
ORF1ab/nsp3	364	L364L	ctC	ctT	1	1	B.1.1.207	0.001182
ORF1ab/nsp3	364	L364L	ctC	ctT	1	1	B.1.1.222	0.000204
ORF1ab/nsp3	364	L364L	ctC	ctT	1	1	B.1.1.243	0.004082
ORF1ab/nsp3	364	L364L	ctC	ctT	1	1	B.1.1.255	0.00303
ORF1ab/nsp3	364	L364L	ctC	ctT	1	1	B.1.1.28	0.000311
ORF1ab/nsp3	364	L364F	Ctc	Ttc	1	1	B.1.1.284	0.000107
ORF1ab/nsp3	364	L364F	Ctc	Ttc	1	1	B.1.1.306	0.000438
ORF1ab/nsp3	364	L364L	ctC	ctT	1	1	B.1.1.306	0.000438
ORF1ab/nsp3	364	L364F	Ctc	Ttc	1	1	B.1.1.312	0.001912
ORF1ab/nsp3	364	L364del	CTC	---	1	1	B.1.1.33	0.000421
ORF1ab/nsp3	364	L364L	ctC	ctT	1	1	B.1.1.389	0.006061
ORF1ab/nsp3	364	L364L	ctC	ctT	1	1	B.1.1.398	0.003226
ORF1ab/nsp3	364	L364L	ctC	ctT	1	1	B.1.1.409	0.002833
ORF1ab/nsp3	364	L364L	ctC	ctT	1	1	B.1.1.412	0.007634
ORF1ab/nsp3	364	L364L	ctC	ctT	1	1	B.1.1.416	0.000905
ORF1ab/nsp3	364	L364L	ctC	ctT	1	1	B.1.1.464	0.001473
ORF1ab/nsp3	364	L364S	CTc	AGc	1	1	B.1.1.467	0.019231
ORF1ab/nsp3	364	L364F	Ctc	Ttc	1	1	B.1.1.522	0.017241
ORF1ab/nsp3	364	L364L	ctC	ctT	1	1	B.1.1.58	0.005376
ORF1ab/nsp3	364	L364L	ctC	ctT	1	1	B.1.1.63	0.000386
ORF1ab/nsp3	364	L364F	Ctc	Ttc	1	1	B.1.1.63	0.000386
ORF1ab/nsp3	364	L364del2	cTC	c--	1	1	B.1.1.7	0.000001
ORF1ab/nsp3	364	L364I	Ctc	Atc	1	1	B.1.1.70	0.000341
ORF1ab/nsp3	364	L364L	ctC	ctT	1	1	B.1.111	0.001175
ORF1ab/nsp3	364	L364L	ctC	ctT	1	1	B.1.115	0.021739
ORF1ab/nsp3	364	L364L	ctC	ctT	1	1	B.1.124	0.007812
ORF1ab/nsp3	364	L364L	ctC	ctT	1	1	B.1.131	0.008772
ORF1ab/nsp3	364	L364del	CTC	---	1	1	B.1.160	0.000031
ORF1ab/nsp3	364	L364I	Ctc	Atc	1	1	B.1.160	0.000031
ORF1ab/nsp3	364	L364F	Ctc	Ttc	1	1	B.1.160	0.000031
ORF1ab/nsp3	364	L364F	Ctc	Ttc	1	1	B.1.177.12	0.000152
ORF1ab/nsp3	364	L364L	ctC	ctT	1	1	B.1.177.12	0.000152
ORF1ab/nsp3	364	L364F	Ctc	Ttc	1	1	B.1.177.17	0.000821
ORF1ab/nsp3	364	L364L	ctC	ctA	1	1	B.1.177.23	0.003236
ORF1ab/nsp3	364	L364L	ctC	ctT	1	1	B.1.177.4	0.000211
ORF1ab/nsp3	364	L364I	Ctc	Atc	1	1	B.1.177.52	0.001757
ORF1ab/nsp3	364	L364del1	ctC	ct-	1	1	B.1.177.6	0.000977
ORF1ab/nsp3	364	L364L	ctC	ctT	1	1	B.1.177.6	0.000977
ORF1ab/nsp3	364	L364P	cTc	cCc	1	1	B.1.177.73	0.000566
ORF1ab/nsp3	364	L364F	Ctc	Ttc	1	1	B.1.177.77	0.000726
ORF1ab/nsp3	364	L364F	Ctc	Ttc	1	1	B.1.177.81	0.000189
ORF1ab/nsp3	364	L364L	ctC	ctT	1	1	B.1.177.87	0.000728
ORF1ab/nsp3	364	L364del2	CTC	--N	1	1	B.1.2	0.000009
ORF1ab/nsp3	364	L364L	ctC	ctT	1	1	B.1.210	0.002132
ORF1ab/nsp3	364	L364L	ctC	ctT	1	1	B.1.221	0.000071
ORF1ab/nsp3	364	L364F	Ctc	Ttc	1	1	B.1.221	0.000071
ORF1ab/nsp3	364	L364F	Ctc	Ttc	1	1	B.1.234	0.000132
ORF1ab/nsp3	364	L364F	Ctc	Ttc	1	1	B.1.240	0.000216
ORF1ab/nsp3	364	L364L	ctC	ctT	1	1	B.1.240	0.000216
ORF1ab/nsp3	364	L364I	Ctc	Atc	1	1	B.1.258	0.000067
ORF1ab/nsp3	364	L364H	cTC	cAT	1	1	B.1.258.17	0.000104
ORF1ab/nsp3	364	L364F	Ctc	Ttc	1	1	B.1.265	0.001271
ORF1ab/nsp3	364	L364R	cTc	cGc	1	1	B.1.332	0.003497
ORF1ab/nsp3	364	L364del2	cTC	c--	1	1	B.1.351	0.00003
ORF1ab/nsp3	364	L364L	ctC	ctT	1	1	B.1.356	0.001727
ORF1ab/nsp3	364	L364L	ctC	ctT	1	1	B.1.36	0.000146
ORF1ab/nsp3	364	L364F	Ctc	Ttc	1	1	B.1.36	0.000146
ORF1ab/nsp3	364	L364del1	ctC	ct-	1	1	B.1.36.1	0.00114
ORF1ab/nsp3	364	L364F	Ctc	Ttc	1	1	B.1.36.22	0.001208
ORF1ab/nsp3	364	L364L	ctC	ctT	1	1	B.1.36.8	0.001
ORF1ab/nsp3	364	L364F	Ctc	Ttc	1	1	B.1.366	0.004878
ORF1ab/nsp3	364	L364F	Ctc	Ttc	1	1	B.1.367	0.000792
ORF1ab/nsp3	364	L364I	Ctc	Atc	1	1	B.1.369	0.000285
ORF1ab/nsp3	364	L364L	ctC	ctT	1	1	B.1.369	0.000285
ORF1ab/nsp3	364	L364F	Ctc	Ttc	1	1	B.1.396	0.000706
ORF1ab/nsp3	364	L364L	ctC	ctT	1	1	B.1.396	0.000706
ORF1ab/nsp3	364	L364F	Ctc	Ttc	1	1	B.1.426	0.001009
ORF1ab/nsp3	364	L364F	Ctc	Ttc	1	1	B.1.427	0.00005
ORF1ab/nsp3	364	L364del	CTC	---	1	1	B.1.427	0.00005
ORF1ab/nsp3	364	L364L	ctC	ctT	1	1	B.1.433	0.003195
ORF1ab/nsp3	364	L364F	Ctc	Ttc	1	1	B.1.459	0.004082
ORF1ab/nsp3	364	L364L	ctC	ctT	1	1	B.1.466	0.023256
ORF1ab/nsp3	364	L364L	ctC	ctA	1	1	B.1.466.2	0.000391
ORF1ab/nsp3	364	L364F	Ctc	Ttc	1	1	B.1.497	0.000315
ORF1ab/nsp3	364	L364L	ctC	ctT	1	1	B.1.509	0.000866
ORF1ab/nsp3	364	L364del	CTC	---	1	1	B.1.517	0.000427
ORF1ab/nsp3	364	L364F	Ctc	Ttc	1	1	B.1.524	0.001406
ORF1ab/nsp3	364	L364F	Ctc	Ttc	1	1	B.1.527	0.003704
ORF1ab/nsp3	364	L364L	ctC	ctT	1	1	B.1.568	0.001111
ORF1ab/nsp3	364	L364F	Ctc	Ttc	1	1	B.1.577	0.000687
ORF1ab/nsp3	364	L364L	ctC	ctT	1	1	B.1.580	0.004065
ORF1ab/nsp3	364	L364I	Ctc	Atc	1	1	B.1.582	0.000491
ORF1ab/nsp3	364	L364del	CTC	---	1	1	B.1.595	0.000261
ORF1ab/nsp3	364	L364L	ctC	ctT	1	1	B.1.595.1	0.005848
ORF1ab/nsp3	364	L364F	Ctc	Ttc	1	1	B.1.609	0.000479
ORF1ab/nsp3	364	L364V	Ctc	Gtc	1	1	B.1.617.1	0.000129
ORF1ab/nsp3	364	L364del	CTC	---	1	1	B.1.617.2	0.000004
ORF1ab/nsp3	364	L364I	Ctc	Atc	1	1	B.1.621	0.000089
ORF1ab/nsp3	364	L364L	ctC	ctT	1	1	B.1.621	0.000089
ORF1ab/nsp3	364	L364P	cTc	cCc	1	1	B.1.637	0.000073
ORF1ab/nsp3	364	L364del	CTC	---	1	1	B.57	0.015152
ORF1ab/nsp3	364	L364L	ctC	ctA	1	1	B.6.6	0.000889
ORF1ab/nsp3	364	L364L	ctC	ctT	1	1	C.1.2	0.004255
ORF1ab/nsp3	364	L364L	ctC	ctT	1	1	C.14	0.004329
ORF1ab/nsp3	364	L364P	cTc	cCc	1	1	C.36	0.000911
ORF1ab/nsp3	364	L364F	Ctc	Ttc	1	1	C.37	0.000116
ORF1ab/nsp3	364	L364I	Ctc	Atc	1	1	D.2	0.000075
ORF1ab/nsp3	364	L364del	CTC	---	1	1	N.6	0.007092
ORF1ab/nsp3	364	L364I	Ctc	Atc	1	1	P.1	0.000016
ORF1ab/nsp3	364	L364del	CTC	---	1	1	P.1	0.000016
ORF1ab/nsp3	364	L364F	Ctc	Ttc	1	1	P.1.1	0.000318
ORF1ab/nsp3	364	L364F	Ctc	Ttc	1	1	P.1.12	0.000484
ORF1ab/nsp3	364	L364L	ctC	ctT	1	1	P.1.14	0.000048
ORF1ab/nsp3	364	L364L	ctC	ctT	1	1	P.1.2	0.001156
ORF1ab/nsp3	364	L364L	ctC	ctT	1	1	P.3	0.001595
ORF1ab/nsp3	364	L364I	Ctc	Atc	1	1	P.6	0.003145
ORF1ab/nsp3	364	L364L	ctC	ctT	1	1	Q.1	0.000126
ORF1ab/nsp3	364	L364del1	ctC	ct-	1	1	R.1	0.00009
ORF1ab/nsp3	364	L364F	Ctc	Ttc	1	1	R.1	0.00009
ORF1ab/nsp3	364	L364L	ctC	ctT	1	1	W.4	0.001351

CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk

CoV-GLUE uses sequence data from GISAID. GISAID data provided via this web application is subject to GISAID's Terms and Conditions.