CoV-GLUEGenomeCountriesLineagesMutationsInsertionsDeletionsUpdated:

CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF1ab/nsp3 : CodonNum = 355 & Codon = Atc

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF1ab/nsp3355V355IV1173InonsynGtcAtc6626600.9969793782-3784

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF1ab/nsp3355V355IGtcAtc660662All0.000126
ORF1ab/nsp3355V355IGtcAtc524524B.1.1.70.000469
ORF1ab/nsp3355V355IGtcAtc7676B.1.1600.00237
ORF1ab/nsp3355V355IGtcAtc1414AY.440.000085
ORF1ab/nsp3355V355IGtcAtc680.333333
ORF1ab/nsp3355V355IGtcAtc88AY.40.000012
ORF1ab/nsp3355V355IGtcAtc44B.1.617.20.000015
ORF1ab/nsp3355V355IGtcAtc33AD.20.000657
ORF1ab/nsp3355V355IGtcAtc33P.30.004785
ORF1ab/nsp3355V355IGtcAtc22AY.430.000009
ORF1ab/nsp3355V355IGtcAtc22AY.620.000871
ORF1ab/nsp3355V355IGtcAtc22B.1.4690.00722
ORF1ab/nsp3355V355IGtcAtc11AY.20.000356
ORF1ab/nsp3355V355IGtcAtc11AY.230.00007
ORF1ab/nsp3355V355IGtcAtc11AY.250.000006
ORF1ab/nsp3355V355IGtcAtc11AY.50.000021
ORF1ab/nsp3355V355IGtcAtc11AY.710.000475
ORF1ab/nsp3355V355IGtcAtc11AY.730.000665
ORF1ab/nsp3355V355IGtcAtc11AY.780.001541
ORF1ab/nsp3355V355IGtcAtc11AY.840.000437
ORF1ab/nsp3355V355IGtcAtc11B0.000128
ORF1ab/nsp3355V355IGtcAtc11B.10.000009
ORF1ab/nsp3355V355IGtcAtc11B.1.2430.00007
ORF1ab/nsp3355V355IGtcAtc11B.1.36.180.00042
ORF1ab/nsp3355V355IGtcAtc11B.1.4270.00005
ORF1ab/nsp3355V355IGtcAtc11B.1.438.10.000107
ORF1ab/nsp3355V355IGtcAtc11B.1.5250.000113
ORF1ab/nsp3355V355IGtcAtc11B.1.6280.000352

CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk

CoV-GLUE uses sequence data from GISAID. GISAID data provided via this web application is subject to GISAID's Terms and Conditions.