CoV-GLUE | Mutations | Mutation
Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):
ORF | CodonNum | Mut | ORF1abMut | MutType | RefCodon | MutCodon | AACount | CodonCount | CodonProp | Genome Position |
ORF1ab/nsp3 | 355 | V355V | V1173V | syn | gtC | gtT | 6805 | 6715 | 0.986774 | 3782-3784 |
ORF1ab/nsp3 | 355 | V355V | V1173V | syn | gtC | gtA | 6805 | 70 | 0.0102866 | 3782-3784 |
ORF1ab/nsp3 | 355 | V355V | V1173V | syn | gtC | gtG | 6805 | 20 | 0.00293902 | 3782-3784 |
ORF1ab/nsp3 | 355 | V355D | V1173D | nonsyn | gTc | gAc | 1551 | 1550 | 0.999355 | 3782-3784 |
ORF1ab/nsp3 | 355 | V355D | V1173D | nonsyn | gTC | gAT | 1551 | 1 | 0.000644745 | 3782-3784 |
ORF1ab/nsp3 | 355 | V355I | V1173I | nonsyn | Gtc | Atc | 662 | 660 | 0.996979 | 3782-3784 |
ORF1ab/nsp3 | 355 | V355I | V1173I | nonsyn | GtC | AtT | 662 | 2 | 0.00302115 | 3782-3784 |
ORF1ab/nsp3 | 355 | V355L | V1173L | nonsyn | Gtc | Ctc | 79 | 78 | 0.987342 | 3782-3784 |
ORF1ab/nsp3 | 355 | V355L | V1173L | nonsyn | GtC | CtT | 79 | 1 | 0.0126582 | 3782-3784 |
ORF1ab/nsp3 | 355 | V355A | V1173A | nonsyn | gTc | gCc | 78 | 75 | 0.961538 | 3782-3784 |
ORF1ab/nsp3 | 355 | V355A | V1173A | nonsyn | gTC | gCT | 78 | 3 | 0.0384615 | 3782-3784 |
ORF1ab/nsp3 | 355 | V355del | V1173del | del | GTC | --- | 39 | 39 | 1 | 3782-3784 |
ORF1ab/nsp3 | 355 | V355F | V1173F | nonsyn | Gtc | Ttc | 25 | 22 | 0.88 | 3782-3784 |
ORF1ab/nsp3 | 355 | V355F | V1173F | nonsyn | GtC | TtT | 25 | 3 | 0.12 | 3782-3784 |
ORF1ab/nsp3 | 355 | V355G | V1173G | nonsyn | gTc | gGc | 11 | 7 | 0.636364 | 3782-3784 |
ORF1ab/nsp3 | 355 | V355G | V1173G | nonsyn | gTC | gGT | 11 | 4 | 0.363636 | 3782-3784 |
ORF1ab/nsp3 | 355 | V355C | V1173C | nonsyn | GTC | TGT | 6 | 3 | 0.5 | 3782-3784 |
ORF1ab/nsp3 | 355 | V355C | V1173C | nonsyn | GTc | TGc | 6 | 3 | 0.5 | 3782-3784 |
ORF1ab/nsp3 | 355 | V355S | V1173S | nonsyn | GTc | AGc | 6 | 2 | 0.333333 | 3782-3784 |
ORF1ab/nsp3 | 355 | V355S | V1173S | nonsyn | GTC | AGT | 6 | 2 | 0.333333 | 3782-3784 |
ORF1ab/nsp3 | 355 | V355S | V1173S | nonsyn | GTC | TCT | 6 | 1 | 0.166667 | 3782-3784 |
ORF1ab/nsp3 | 355 | V355S | V1173S | nonsyn | GTc | TCc | 6 | 1 | 0.166667 | 3782-3784 |
ORF1ab/nsp3 | 355 | V355R | V1173R | nonsyn | GTC | CGT | 2 | 1 | 0.5 | 3782-3784 |
ORF1ab/nsp3 | 355 | V355R | V1173R | nonsyn | GTc | CGc | 2 | 1 | 0.5 | 3782-3784 |
ORF1ab/nsp3 | 355 | V355P | V1173P | nonsyn | GTC | CCT | 2 | 1 | 0.5 | 3782-3784 |
ORF1ab/nsp3 | 355 | V355P | V1173P | nonsyn | GTc | CCc | 2 | 1 | 0.5 | 3782-3784 |
ORF1ab/nsp3 | 355 | V355T | V1173T | nonsyn | GTC | ACT | 2 | 1 | 0.5 | 3782-3784 |
ORF1ab/nsp3 | 355 | V355T | V1173T | nonsyn | GTc | ACc | 2 | 1 | 0.5 | 3782-3784 |
ORF1ab/nsp3 | 355 | V355Q | V1173Q | nonsyn | GTC | CAA | 1 | 1 | 1 | 3782-3784 |
ORF1ab/nsp3 | 355 | V355del2 | V1173del2 | del | gTC | g-- | 1 | 1 | 1 | 3782-3784 |
ORF1ab/nsp3 | 355 | V355del1 | V1173del1 | del | gtC | gt- | 1 | 1 | 1 | 3782-3784 |
Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):
ORF | CodonNum | Mut | RefCodon | MutCodon | CodonCount | AACount | Lineage | LineageCodonProp |
ORF1ab/nsp3 | 355 | V355V | gtC | gtT | 6715 | 6805 | All | 0.001284 |
ORF1ab/nsp3 | 355 | V355V | gtC | gtA | 70 | 6805 | All | 0.000013 |
ORF1ab/nsp3 | 355 | V355V | gtC | gtG | 20 | 6805 | All | 0.000004 |
ORF1ab/nsp3 | 355 | V355D | gTc | gAc | 1550 | 1551 | All | 0.000296 |
ORF1ab/nsp3 | 355 | V355D | gTC | gAT | 1 | 1551 | All | 0 |
ORF1ab/nsp3 | 355 | V355V | gtC | gtT | 1021 | 1021 | AY.25 | 0.006141 |
ORF1ab/nsp3 | 355 | V355V | gtC | gtT | 905 | 909 | B.1.1.7 | 0.00081 |
ORF1ab/nsp3 | 355 | V355V | gtC | gtG | 2 | 909 | B.1.1.7 | 0.000002 |
ORF1ab/nsp3 | 355 | V355V | gtC | gtA | 2 | 909 | B.1.1.7 | 0.000002 |
ORF1ab/nsp3 | 355 | V355D | gTc | gAc | 819 | 820 | B.1.429 | 0.01927 |
ORF1ab/nsp3 | 355 | V355D | gTC | gAT | 1 | 820 | B.1.429 | 0.000024 |
ORF1ab/nsp3 | 355 | V355I | Gtc | Atc | 660 | 662 | All | 0.000126 |
ORF1ab/nsp3 | 355 | V355I | GtC | AtT | 2 | 662 | All | 0 |
ORF1ab/nsp3 | 355 | V355I | Gtc | Atc | 524 | 524 | B.1.1.7 | 0.000469 |
ORF1ab/nsp3 | 355 | V355V | gtC | gtT | 486 | 488 | AY.3 | 0.004834 |
ORF1ab/nsp3 | 355 | V355V | gtC | gtA | 2 | 488 | AY.3 | 0.00002 |
ORF1ab/nsp3 | 355 | V355V | gtC | gtT | 479 | 479 | B.1.617.2 | 0.001804 |
ORF1ab/nsp3 | 355 | V355V | gtC | gtT | 451 | 454 | AY.4 | 0.000702 |
ORF1ab/nsp3 | 355 | V355V | gtC | gtA | 3 | 454 | AY.4 | 0.000005 |
ORF1ab/nsp3 | 355 | V355V | gtC | gtT | 337 | 337 | B.1.609 | 0.161553 |
ORF1ab/nsp3 | 355 | V355V | gtC | gtT | 236 | 236 | B.1.243 | 0.016422 |
ORF1ab/nsp3 | 355 | V355D | gTc | gAc | 221 | 221 | B.1.427 | 0.01116 |
ORF1ab/nsp3 | 355 | V355D | gTc | gAc | 208 | 208 | B.1.2 | 0.001832 |
ORF1ab/nsp3 | 355 | V355V | gtC | gtT | 184 | 184 | B.1.1 | 0.003338 |
ORF1ab/nsp3 | 355 | V355V | gtC | gtT | 146 | 157 | B.1.2 | 0.001286 |
ORF1ab/nsp3 | 355 | V355V | gtC | gtA | 10 | 157 | B.1.2 | 0.000088 |
ORF1ab/nsp3 | 355 | V355V | gtC | gtG | 1 | 157 | B.1.2 | 0.000009 |
ORF1ab/nsp3 | 355 | V355V | gtC | gtT | 143 | 144 | B.1 | 0.00131 |
ORF1ab/nsp3 | 355 | V355V | gtC | gtA | 1 | 144 | B.1 | 0.000009 |
ORF1ab/nsp3 | 355 | V355V | gtC | gtT | 140 | 142 | AY.43 | 0.00062 |
ORF1ab/nsp3 | 355 | V355V | gtC | gtA | 1 | 142 | AY.43 | 0.000004 |
ORF1ab/nsp3 | 355 | V355V | gtC | gtG | 1 | 142 | AY.43 | 0.000004 |
ORF1ab/nsp3 | 355 | V355V | gtC | gtT | 140 | 140 | AY.103 | 0.000869 |
ORF1ab/nsp3 | 355 | V355V | gtC | gtT | 138 | 139 | AY.5 | 0.00285 |
ORF1ab/nsp3 | 355 | V355V | gtC | gtA | 1 | 139 | AY.5 | 0.000021 |
ORF1ab/nsp3 | 355 | V355V | gtC | gtT | 122 | 122 | B.1.177 | 0.001606 |
ORF1ab/nsp3 | 355 | V355V | gtC | gtT | 98 | 98 | B.1.337 | 0.547486 |
ORF1ab/nsp3 | 355 | V355V | gtC | gtT | 93 | 93 | AY.9.1 | 0.007786 |
ORF1ab/nsp3 | 355 | V355V | gtC | gtT | 83 | 83 | AY.9.2 | 0.003049 |
ORF1ab/nsp3 | 355 | V355V | gtC | gtT | 80 | 80 | B.1.1.263 | 0.124611 |
ORF1ab/nsp3 | 355 | V355L | Gtc | Ctc | 78 | 79 | All | 0.000015 |
ORF1ab/nsp3 | 355 | V355L | GtC | CtT | 1 | 79 | All | 0 |
ORF1ab/nsp3 | 355 | V355A | gTc | gCc | 75 | 78 | All | 0.000014 |
ORF1ab/nsp3 | 355 | V355A | gTC | gCT | 3 | 78 | All | 0.000001 |
ORF1ab/nsp3 | 355 | V355I | Gtc | Atc | 76 | 76 | B.1.160 | 0.00237 |
ORF1ab/nsp3 | 355 | V355L | Gtc | Ctc | 72 | 72 | B.1.541 | 0.318584 |
ORF1ab/nsp3 | 355 | V355V | gtC | gtT | 63 | 63 | AY.98 | 0.004977 |
ORF1ab/nsp3 | 355 | V355V | gtC | gtT | 52 | 53 | AY.44 | 0.000317 |
ORF1ab/nsp3 | 355 | V355V | gtC | gtG | 1 | 53 | AY.44 | 0.000006 |
ORF1ab/nsp3 | 355 | V355V | gtC | gtT | 43 | 43 | B.1.159 | 0.52439 |
ORF1ab/nsp3 | 355 | V355V | gtC | gtT | 43 | 43 | B.1.160 | 0.001341 |
ORF1ab/nsp3 | 355 | V355V | gtC | gtT | 40 | 41 | B.1.429 | 0.000941 |
ORF1ab/nsp3 | 355 | V355V | gtC | gtA | 1 | 41 | B.1.429 | 0.000024 |
ORF1ab/nsp3 | 355 | V355del | GTC | --- | 39 | 39 | All | 0.000007 |
ORF1ab/nsp3 | 355 | V355V | gtC | gtT | 38 | 38 | AY.4.2 | 0.000824 |
ORF1ab/nsp3 | 355 | V355V | gtC | gtT | 37 | 37 | B.1.1.189 | 0.055976 |
ORF1ab/nsp3 | 355 | V355D | gTc | gAc | 37 | 37 | B.1.243 | 0.002575 |
ORF1ab/nsp3 | 355 | V355V | gtC | gtT | 36 | 36 | AY.98.1 | 0.001744 |
ORF1ab/nsp3 | 355 | V355V | gtC | gtT | 30 | 31 | AY.29 | 0.000473 |
ORF1ab/nsp3 | 355 | V355V | gtC | gtA | 1 | 31 | AY.29 | 0.000016 |
ORF1ab/nsp3 | 355 | V355V | gtC | gtT | 31 | 31 | P.1 | 0.000488 |
ORF1ab/nsp3 | 355 | V355D | gTc | gAc | 30 | 30 | B.1 | 0.000275 |
ORF1ab/nsp3 | 355 | V355V | gtC | gtT | 29 | 29 | B.1.177.19 | 0.041488 |
ORF1ab/nsp3 | 355 | V355V | gtC | gtA | 27 | 28 | B.1.596 | 0.002353 |
ORF1ab/nsp3 | 355 | V355V | gtC | gtT | 1 | 28 | B.1.596 | 0.000087 |
ORF1ab/nsp3 | 355 | V355V | gtC | gtT | 27 | 27 | B.1.351 | 0.000803 |
ORF1ab/nsp3 | 355 | V355V | gtC | gtT | 26 | 26 | B.1.1.519 | 0.001032 |
ORF1ab/nsp3 | 355 | V355F | Gtc | Ttc | 22 | 25 | All | 0.000004 |
ORF1ab/nsp3 | 355 | V355F | GtC | TtT | 3 | 25 | All | 0.000001 |
ORF1ab/nsp3 | 355 | V355V | gtC | gtT | 24 | 24 | B.1.1.25 | 0.013644 |
ORF1ab/nsp3 | 355 | V355V | gtC | gtT | 24 | 24 | B.1.258.15 | 0.45283 |
ORF1ab/nsp3 | 355 | V355D | gTc | gAc | 24 | 24 | B.1.561 | 0.009528 |
ORF1ab/nsp3 | 355 | V355V | gtC | gtT | 23 | 23 | AY.5.3 | 0.00776 |
ORF1ab/nsp3 | 355 | V355D | gTc | gAc | 23 | 23 | B.1.1.519 | 0.000913 |
ORF1ab/nsp3 | 355 | V355V | gtC | gtT | 12 | 22 | B.1.438.1 | 0.001287 |
ORF1ab/nsp3 | 355 | V355V | gtC | gtG | 10 | 22 | B.1.438.1 | 0.001073 |
ORF1ab/nsp3 | 355 | V355V | gtC | gtT | 22 | 22 | C.37 | 0.002553 |
ORF1ab/nsp3 | 355 | V355V | gtC | gtT | 20 | 21 | AY.20 | 0.000777 |
ORF1ab/nsp3 | 355 | V355V | gtC | gtA | 1 | 21 | AY.20 | 0.000039 |
ORF1ab/nsp3 | 355 | V355D | gTc | gAc | 21 | 21 | B.1.367 | 0.01664 |
ORF1ab/nsp3 | 355 | V355V | gtC | gtT | 20 | 20 | B.1.1.464 | 0.029455 |
ORF1ab/nsp3 | 355 | V355V | gtC | gtT | 19 | 19 | AY.39.1 | 0.000753 |
ORF1ab/nsp3 | 355 | V355V | gtC | gtT | 18 | 18 | AY.102 | 0.000477 |
ORF1ab/nsp3 | 355 | V355V | gtC | gtT | 16 | 16 | AY.4.5 | 0.00172 |
ORF1ab/nsp3 | 355 | V355V | gtC | gtT | 16 | 16 | B.1.234 | 0.002111 |
ORF1ab/nsp3 | 355 | V355A | gTc | gCc | 16 | 16 | B.1.234 | 0.002111 |
ORF1ab/nsp3 | 355 | V355V | gtC | gtT | 15 | 15 | AY.3.1 | 0.001279 |
ORF1ab/nsp3 | 355 | V355D | gTc | gAc | 15 | 15 | B.1.1 | 0.000272 |
ORF1ab/nsp3 | 355 | V355V | gtC | gtT | 15 | 15 | B.1.1.222 | 0.00306 |
ORF1ab/nsp3 | 355 | V355D | gTc | gAc | 15 | 15 | B.1.1.222 | 0.00306 |
ORF1ab/nsp3 | 355 | V355V | gtC | gtT | 15 | 15 | B.1.1.434 | 0.005228 |
ORF1ab/nsp3 | 355 | V355V | gtC | gtT | 14 | 14 | AY.26 | 0.000396 |
ORF1ab/nsp3 | 355 | V355V | gtC | gtT | 14 | 14 | AY.39 | 0.000346 |
ORF1ab/nsp3 | 355 | V355I | Gtc | Atc | 14 | 14 | AY.44 | 0.000085 |
ORF1ab/nsp3 | 355 | V355V | gtC | gtT | 14 | 14 | B.1.369 | 0.003993 |
ORF1ab/nsp3 | 355 | V355V | gtC | gtT | 13 | 13 | AY.23 | 0.000907 |
ORF1ab/nsp3 | 355 | V355V | gtC | gtT | 13 | 13 | B.1.427 | 0.000656 |
ORF1ab/nsp3 | 355 | V355V | gtC | gtT | 12 | 13 | D.2 | 0.0009 |
ORF1ab/nsp3 | 355 | V355V | gtC | gtA | 1 | 13 | D.2 | 0.000075 |
ORF1ab/nsp3 | 355 | V355V | gtC | gtT | 12 | 12 | AY.46.6 | 0.000866 |
ORF1ab/nsp3 | 355 | V355D | gTc | gAc | 12 | 12 | B.1.1.416 | 0.01086 |
ORF1ab/nsp3 | 355 | V355D | gTc | gAc | 12 | 12 | B.1.126 | 0.015306 |
ORF1ab/nsp3 | 355 | V355V | gtC | gtT | 12 | 12 | B.1.595 | 0.003132 |
ORF1ab/nsp3 | 355 | V355G | gTc | gGc | 7 | 11 | All | 0.000001 |
ORF1ab/nsp3 | 355 | V355G | gTC | gGT | 4 | 11 | All | 0.000001 |
ORF1ab/nsp3 | 355 | V355A | gTc | gCc | 11 | 11 | B.1.426 | 0.0111 |
ORF1ab/nsp3 | 355 | V355V | gtC | gtT | 11 | 11 | B.1.551 | 0.014194 |
ORF1ab/nsp3 | 355 | V355V | gtC | gtT | 11 | 11 | P.2 | 0.002053 |
ORF1ab/nsp3 | 355 | V355V | gtC | gtT | 10 | 10 | AY.42 | 0.000402 |
ORF1ab/nsp3 | 355 | V355V | gtC | gtT | 10 | 10 | B.1.1.168 | 0.263158 |
ORF1ab/nsp3 | 355 | V355V | gtC | gtT | 10 | 10 | B.1.177.21 | 0.000765 |
ORF1ab/nsp3 | 355 | V355D | gTc | gAc | 10 | 10 | B.1.404 | 0.013021 |
ORF1ab/nsp3 | 355 | V355V | gtC | gtT | 10 | 10 | B.1.621 | 0.000885 |
ORF1ab/nsp3 | 355 | V355V | gtC | gtT | 9 | 9 | AY.100 | 0.000414 |
ORF1ab/nsp3 | 355 | V355V | gtC | gtT | 9 | 9 | AY.116 | 0.002581 |
ORF1ab/nsp3 | 355 | V355V | gtC | gtT | 8 | 9 | AY.119 | 0.000282 |
ORF1ab/nsp3 | 355 | V355V | gtC | gtA | 1 | 9 | AY.119 | 0.000035 |
ORF1ab/nsp3 | 355 | V355V | gtC | gtT | 9 | 9 | AY.120 | 0.000335 |
ORF1ab/nsp3 | 355 | V355V | gtC | gtT | 9 | 9 | AY.13 | 0.001449 |
ORF1ab/nsp3 | 355 | V355V | gtC | gtT | 9 | 9 | B.1.1.216 | 0.008014 |
ORF1ab/nsp3 | 355 | V355D | gTc | gAc | 9 | 9 | B.1.232 | 0.004836 |
ORF1ab/nsp3 | 355 | V355D | gTc | gAc | 9 | 9 | B.1.234 | 0.001187 |
ORF1ab/nsp3 | 355 | V355V | gtC | gtT | 9 | 9 | B.1.258.14 | 0.008824 |
ORF1ab/nsp3 | 355 | V355I | Gtc | Atc | 6 | 8 | 0.333333 | |
ORF1ab/nsp3 | 355 | V355I | GtC | AtT | 2 | 8 | 0.111111 | |
ORF1ab/nsp3 | 355 | V355I | Gtc | Atc | 8 | 8 | AY.4 | 0.000012 |
ORF1ab/nsp3 | 355 | V355V | gtC | gtT | 8 | 8 | AY.47 | 0.000249 |
ORF1ab/nsp3 | 355 | V355V | gtC | gtT | 8 | 8 | B.1.1.28 | 0.00249 |
ORF1ab/nsp3 | 355 | V355V | gtC | gtT | 8 | 8 | B.1.258.17 | 0.000832 |
ORF1ab/nsp3 | 355 | V355V | gtC | gtT | 8 | 8 | B.1.526 | 0.000188 |
ORF1ab/nsp3 | 355 | V355V | gtC | gtT | 8 | 8 | B.1.575 | 0.002427 |
ORF1ab/nsp3 | 355 | V355V | gtC | gtT | 7 | 7 | A.23.1 | 0.00493 |
ORF1ab/nsp3 | 355 | V355A | gTc | gCc | 7 | 7 | AY.23 | 0.000488 |
ORF1ab/nsp3 | 355 | V355V | gtC | gtT | 7 | 7 | B.1.1.63 | 0.002701 |
ORF1ab/nsp3 | 355 | V355V | gtC | gtT | 7 | 7 | B.1.177.86 | 0.001284 |
ORF1ab/nsp3 | 355 | V355V | gtC | gtT | 7 | 7 | B.1.221.2 | 0.028112 |
ORF1ab/nsp3 | 355 | V355D | gTc | gAc | 7 | 7 | B.1.241 | 0.005682 |
ORF1ab/nsp3 | 355 | V355V | gtC | gtT | 7 | 7 | B.1.258 | 0.000466 |
ORF1ab/nsp3 | 355 | V355V | gtC | gtA | 7 | 7 | B.1.36.19 | 0.064815 |
ORF1ab/nsp3 | 355 | V355V | gtC | gtT | 7 | 7 | B.1.466.2 | 0.002739 |
ORF1ab/nsp3 | 355 | V355G | gTC | gGT | 3 | 6 | 0.166667 | |
ORF1ab/nsp3 | 355 | V355G | gTc | gGc | 3 | 6 | 0.166667 | |
ORF1ab/nsp3 | 355 | V355S | GTc | AGc | 2 | 6 | 0.111111 | |
ORF1ab/nsp3 | 355 | V355S | GTC | AGT | 2 | 6 | 0.111111 | |
ORF1ab/nsp3 | 355 | V355S | GTc | TCc | 1 | 6 | 0.055556 | |
ORF1ab/nsp3 | 355 | V355S | GTC | TCT | 1 | 6 | 0.055556 | |
ORF1ab/nsp3 | 355 | V355C | GTc | TGc | 3 | 6 | All | 0.000001 |
ORF1ab/nsp3 | 355 | V355C | GTC | TGT | 3 | 6 | All | 0.000001 |
ORF1ab/nsp3 | 355 | V355S | GTC | AGT | 2 | 6 | All | 0 |
ORF1ab/nsp3 | 355 | V355S | GTc | AGc | 2 | 6 | All | 0 |
ORF1ab/nsp3 | 355 | V355S | GTc | TCc | 1 | 6 | All | 0 |
ORF1ab/nsp3 | 355 | V355S | GTC | TCT | 1 | 6 | All | 0 |
ORF1ab/nsp3 | 355 | V355V | gtC | gtT | 6 | 6 | AY.2 | 0.002137 |
ORF1ab/nsp3 | 355 | V355V | gtC | gtT | 6 | 6 | AY.33 | 0.000401 |
ORF1ab/nsp3 | 355 | V355V | gtC | gtT | 6 | 6 | AY.61 | 0.000629 |
ORF1ab/nsp3 | 355 | V355V | gtC | gtT | 6 | 6 | AY.75 | 0.000336 |
ORF1ab/nsp3 | 355 | V355A | gTc | gCc | 6 | 6 | B.1.1.7 | 0.000005 |
ORF1ab/nsp3 | 355 | V355D | gTc | gAc | 6 | 6 | B.1.1.7 | 0.000005 |
ORF1ab/nsp3 | 355 | V355V | gtC | gtT | 6 | 6 | B.1.110.3 | 0.00431 |
ORF1ab/nsp3 | 355 | V355V | gtC | gtT | 6 | 6 | B.1.474 | 0.011407 |
ORF1ab/nsp3 | 355 | V355V | gtC | gtT | 6 | 6 | B.1.546 | 0.022222 |
ORF1ab/nsp3 | 355 | V355V | gtC | gtT | 6 | 6 | B.1.637 | 0.000438 |
ORF1ab/nsp3 | 355 | V355V | gtC | gtT | 5 | 5 | AY.113 | 0.000712 |
ORF1ab/nsp3 | 355 | V355V | gtC | gtT | 5 | 5 | AY.45 | 0.000608 |
ORF1ab/nsp3 | 355 | V355V | gtC | gtT | 5 | 5 | AY.84 | 0.002187 |
ORF1ab/nsp3 | 355 | V355V | gtC | gtT | 5 | 5 | AY.92 | 0.001436 |
ORF1ab/nsp3 | 355 | V355V | gtC | gtT | 5 | 5 | B.1.1.433 | 0.007123 |
ORF1ab/nsp3 | 355 | V355del | GTC | --- | 5 | 5 | B.1.1.7 | 0.000004 |
ORF1ab/nsp3 | 355 | V355V | gtC | gtT | 5 | 5 | B.1.1.91 | 0.833333 |
ORF1ab/nsp3 | 355 | V355del | GTC | --- | 5 | 5 | B.1.2 | 0.000044 |
ORF1ab/nsp3 | 355 | V355V | gtC | gtT | 5 | 5 | B.1.36.17 | 0.00247 |
ORF1ab/nsp3 | 355 | V355V | gtC | gtT | 5 | 5 | B.1.564 | 0.002129 |
ORF1ab/nsp3 | 355 | V355D | gTc | gAc | 5 | 5 | B.1.565 | 0.004052 |
ORF1ab/nsp3 | 355 | V355V | gtC | gtT | 5 | 5 | C.36.3 | 0.002836 |
ORF1ab/nsp3 | 355 | V355V | gtC | gtT | 5 | 5 | N.5 | 0.008834 |
ORF1ab/nsp3 | 355 | V355L | Gtc | Ctc | 3 | 4 | 0.166667 | |
ORF1ab/nsp3 | 355 | V355F | GtC | TtT | 2 | 4 | 0.111111 | |
ORF1ab/nsp3 | 355 | V355C | GTC | TGT | 2 | 4 | 0.111111 | |
ORF1ab/nsp3 | 355 | V355C | GTc | TGc | 2 | 4 | 0.111111 | |
ORF1ab/nsp3 | 355 | V355A | gTC | gCT | 2 | 4 | 0.111111 | |
ORF1ab/nsp3 | 355 | V355A | gTc | gCc | 2 | 4 | 0.111111 | |
ORF1ab/nsp3 | 355 | V355F | Gtc | Ttc | 2 | 4 | 0.111111 | |
ORF1ab/nsp3 | 355 | V355L | GtC | CtT | 1 | 4 | 0.055556 | |
ORF1ab/nsp3 | 355 | V355V | gtC | gtT | 4 | 4 | AY.27 | 0.000259 |
ORF1ab/nsp3 | 355 | V355V | gtC | gtT | 4 | 4 | AY.34 | 0.000388 |
ORF1ab/nsp3 | 355 | V355A | gTc | gCc | 4 | 4 | AY.4 | 0.000006 |
ORF1ab/nsp3 | 355 | V355del | GTC | --- | 4 | 4 | AY.4 | 0.000006 |
ORF1ab/nsp3 | 355 | V355V | gtC | gtT | 4 | 4 | AY.46.4 | 0.000658 |
ORF1ab/nsp3 | 355 | V355V | gtC | gtT | 4 | 4 | AY.6 | 0.000165 |
ORF1ab/nsp3 | 355 | V355V | gtC | gtT | 4 | 4 | AY.81 | 0.007968 |
ORF1ab/nsp3 | 355 | V355V | gtC | gtT | 4 | 4 | AY.9 | 0.00027 |
ORF1ab/nsp3 | 355 | V355del | GTC | --- | 4 | 4 | B.1 | 0.000037 |
ORF1ab/nsp3 | 355 | V355V | gtC | gtT | 4 | 4 | B.1.1.294 | 0.005063 |
ORF1ab/nsp3 | 355 | V355V | gtC | gtT | 4 | 4 | B.1.1.318 | 0.001207 |
ORF1ab/nsp3 | 355 | V355D | gTc | gAc | 4 | 4 | B.1.1.335 | 0.051948 |
ORF1ab/nsp3 | 355 | V355D | gTc | gAc | 4 | 4 | B.1.1.432 | 0.005063 |
ORF1ab/nsp3 | 355 | V355V | gtC | gtT | 4 | 4 | B.1.104 | 0.01476 |
ORF1ab/nsp3 | 355 | V355V | gtC | gtT | 4 | 4 | B.1.3 | 0.010471 |
ORF1ab/nsp3 | 355 | V355D | gTc | gAc | 4 | 4 | B.1.400 | 0.001716 |
ORF1ab/nsp3 | 355 | V355V | gtC | gtT | 4 | 4 | B.1.525 | 0.000453 |
ORF1ab/nsp3 | 355 | V355D | gTc | gAc | 4 | 4 | B.1.551 | 0.005161 |
ORF1ab/nsp3 | 355 | V355V | gtC | gtT | 4 | 4 | B.1.577 | 0.002749 |
ORF1ab/nsp3 | 355 | V355D | gTc | gAc | 4 | 4 | B.1.596 | 0.000349 |
ORF1ab/nsp3 | 355 | V355I | Gtc | Atc | 4 | 4 | B.1.617.2 | 0.000015 |
ORF1ab/nsp3 | 355 | V355V | gtC | gtT | 4 | 4 | B.1.618 | 0.016129 |
ORF1ab/nsp3 | 355 | V355V | gtC | gtT | 4 | 4 | B.1.628 | 0.001409 |
ORF1ab/nsp3 | 355 | V355F | Gtc | Ttc | 4 | 4 | D.2 | 0.0003 |
ORF1ab/nsp3 | 355 | V355V | gtC | gtT | 4 | 4 | Q.8 | 0.00066 |
ORF1ab/nsp3 | 355 | V355V | gtC | gtT | 3 | 3 | 0.166667 | |
ORF1ab/nsp3 | 355 | V355V | gtC | gtT | 3 | 3 | A.1 | 0.000846 |
ORF1ab/nsp3 | 355 | V355I | Gtc | Atc | 3 | 3 | AD.2 | 0.000657 |
ORF1ab/nsp3 | 355 | V355V | gtC | gtT | 3 | 3 | AY.108 | 0.003308 |
ORF1ab/nsp3 | 355 | V355V | gtC | gtA | 3 | 3 | AY.109 | 0.002219 |
ORF1ab/nsp3 | 355 | V355A | gTc | gCc | 3 | 3 | AY.29 | 0.000047 |
ORF1ab/nsp3 | 355 | V355V | gtC | gtT | 3 | 3 | AY.46 | 0.000312 |
ORF1ab/nsp3 | 355 | V355V | gtC | gtT | 3 | 3 | AY.48 | 0.001395 |
ORF1ab/nsp3 | 355 | V355A | gTc | gCc | 2 | 3 | B.1.1 | 0.000036 |
ORF1ab/nsp3 | 355 | V355F | Gtc | Ttc | 2 | 3 | B.1.1 | 0.000036 |
ORF1ab/nsp3 | 355 | V355F | GtC | TtT | 1 | 3 | B.1.1 | 0.000018 |
ORF1ab/nsp3 | 355 | V355A | gTC | gCT | 1 | 3 | B.1.1 | 0.000018 |
ORF1ab/nsp3 | 355 | V355A | gTc | gCc | 3 | 3 | B.1.1.168 | 0.078947 |
ORF1ab/nsp3 | 355 | V355V | gtC | gtT | 3 | 3 | B.1.1.207 | 0.003546 |
ORF1ab/nsp3 | 355 | V355V | gtC | gtT | 3 | 3 | B.1.1.232 | 0.005445 |
ORF1ab/nsp3 | 355 | V355V | gtC | gtT | 3 | 3 | B.1.1.265 | 0.009464 |
ORF1ab/nsp3 | 355 | V355V | gtC | gtT | 3 | 3 | B.1.1.33 | 0.001263 |
ORF1ab/nsp3 | 355 | V355V | gtC | gtT | 3 | 3 | B.1.1.37 | 0.000579 |
ORF1ab/nsp3 | 355 | V355V | gtC | gtT | 3 | 3 | B.1.1.70 | 0.001023 |
ORF1ab/nsp3 | 355 | V355A | gTc | gCc | 3 | 3 | B.1.160 | 0.000094 |
ORF1ab/nsp3 | 355 | V355V | gtC | gtT | 3 | 3 | B.1.169 | 0.044776 |
ORF1ab/nsp3 | 355 | V355V | gtC | gtT | 3 | 3 | B.1.177.16 | 0.001993 |
ORF1ab/nsp3 | 355 | V355V | gtC | gtT | 3 | 3 | B.1.177.33 | 0.004934 |
ORF1ab/nsp3 | 355 | V355V | gtC | gtA | 3 | 3 | B.1.177.82 | 0.001432 |
ORF1ab/nsp3 | 355 | V355D | gTc | gAc | 3 | 3 | B.1.311 | 0.000824 |
ORF1ab/nsp3 | 355 | V355D | gTc | gAc | 3 | 3 | B.1.324 | 0.004815 |
ORF1ab/nsp3 | 355 | V355V | gtC | gtT | 3 | 3 | B.1.326 | 0.022727 |
ORF1ab/nsp3 | 355 | V355D | gTc | gAc | 3 | 3 | B.1.588 | 0.00273 |
ORF1ab/nsp3 | 355 | V355D | gTc | gAc | 3 | 3 | B.1.595 | 0.000783 |
ORF1ab/nsp3 | 355 | V355D | gTc | gAc | 3 | 3 | B.1.609 | 0.001438 |
ORF1ab/nsp3 | 355 | V355V | gtC | gtT | 3 | 3 | B.1.617.1 | 0.000387 |
ORF1ab/nsp3 | 355 | V355V | gtC | gtT | 3 | 3 | B.4 | 0.006623 |
ORF1ab/nsp3 | 355 | V355V | gtC | gtT | 3 | 3 | N.4 | 0.012766 |
ORF1ab/nsp3 | 355 | V355V | gtC | gtT | 3 | 3 | P.1.14 | 0.000143 |
ORF1ab/nsp3 | 355 | V355V | gtC | gtT | 3 | 3 | P.1.15 | 0.000697 |
ORF1ab/nsp3 | 355 | V355I | Gtc | Atc | 3 | 3 | P.3 | 0.004785 |
ORF1ab/nsp3 | 355 | V355T | GTC | ACT | 1 | 2 | 0.055556 | |
ORF1ab/nsp3 | 355 | V355R | GTc | CGc | 1 | 2 | 0.055556 | |
ORF1ab/nsp3 | 355 | V355P | GTc | CCc | 1 | 2 | 0.055556 | |
ORF1ab/nsp3 | 355 | V355R | GTC | CGT | 1 | 2 | 0.055556 | |
ORF1ab/nsp3 | 355 | V355T | GTc | ACc | 1 | 2 | 0.055556 | |
ORF1ab/nsp3 | 355 | V355P | GTC | CCT | 1 | 2 | 0.055556 | |
ORF1ab/nsp3 | 355 | V355V | gtC | gtT | 2 | 2 | AA.8 | 0.044444 |
ORF1ab/nsp3 | 355 | V355V | gtC | gtT | 2 | 2 | AE.8 | 0.000978 |
ORF1ab/nsp3 | 355 | V355P | GTc | CCc | 1 | 2 | All | 0 |
ORF1ab/nsp3 | 355 | V355T | GTc | ACc | 1 | 2 | All | 0 |
ORF1ab/nsp3 | 355 | V355T | GTC | ACT | 1 | 2 | All | 0 |
ORF1ab/nsp3 | 355 | V355R | GTC | CGT | 1 | 2 | All | 0 |
ORF1ab/nsp3 | 355 | V355R | GTc | CGc | 1 | 2 | All | 0 |
ORF1ab/nsp3 | 355 | V355P | GTC | CCT | 1 | 2 | All | 0 |
ORF1ab/nsp3 | 355 | V355V | gtC | gtT | 2 | 2 | AY.107 | 0.000932 |
ORF1ab/nsp3 | 355 | V355V | gtC | gtT | 2 | 2 | AY.16.1 | 0.00094 |
ORF1ab/nsp3 | 355 | V355F | Gtc | Ttc | 2 | 2 | AY.3 | 0.00002 |
ORF1ab/nsp3 | 355 | V355A | gTc | gCc | 2 | 2 | AY.3 | 0.00002 |
ORF1ab/nsp3 | 355 | V355V | gtC | gtT | 2 | 2 | AY.32 | 0.001065 |
ORF1ab/nsp3 | 355 | V355V | gtC | gtT | 2 | 2 | AY.38 | 0.000999 |
ORF1ab/nsp3 | 355 | V355I | Gtc | Atc | 2 | 2 | AY.43 | 0.000009 |
ORF1ab/nsp3 | 355 | V355A | gTc | gCc | 2 | 2 | AY.43 | 0.000009 |
ORF1ab/nsp3 | 355 | V355V | gtC | gtT | 2 | 2 | AY.49 | 0.00639 |
ORF1ab/nsp3 | 355 | V355V | gtC | gtT | 2 | 2 | AY.5.4 | 0.000553 |
ORF1ab/nsp3 | 355 | V355V | gtC | gtT | 2 | 2 | AY.54 | 0.000191 |
ORF1ab/nsp3 | 355 | V355V | gtC | gtT | 2 | 2 | AY.58 | 0.001815 |
ORF1ab/nsp3 | 355 | V355I | Gtc | Atc | 2 | 2 | AY.62 | 0.000871 |
ORF1ab/nsp3 | 355 | V355V | gtC | gtT | 2 | 2 | AY.91 | 0.001461 |
ORF1ab/nsp3 | 355 | V355V | gtC | gtT | 2 | 2 | B | 0.000256 |
ORF1ab/nsp3 | 355 | V355G | gTC | gGT | 1 | 2 | B.1.1 | 0.000018 |
ORF1ab/nsp3 | 355 | V355C | GTc | TGc | 1 | 2 | B.1.1 | 0.000018 |
ORF1ab/nsp3 | 355 | V355C | GTC | TGT | 1 | 2 | B.1.1 | 0.000018 |
ORF1ab/nsp3 | 355 | V355G | gTc | gGc | 1 | 2 | B.1.1 | 0.000018 |
ORF1ab/nsp3 | 355 | V355V | gtC | gtT | 2 | 2 | B.1.1.198 | 0.002937 |
ORF1ab/nsp3 | 355 | V355D | gTc | gAc | 2 | 2 | B.1.1.205 | 0.007435 |
ORF1ab/nsp3 | 355 | V355D | gTc | gAc | 2 | 2 | B.1.1.207 | 0.002364 |
ORF1ab/nsp3 | 355 | V355V | gtC | gtT | 2 | 2 | B.1.1.214 | 0.000111 |
ORF1ab/nsp3 | 355 | V355V | gtC | gtT | 2 | 2 | B.1.1.230 | 0.018349 |
ORF1ab/nsp3 | 355 | V355V | gtC | gtT | 2 | 2 | B.1.1.243 | 0.008163 |
ORF1ab/nsp3 | 355 | V355V | gtC | gtT | 2 | 2 | B.1.1.303 | 0.005525 |
ORF1ab/nsp3 | 355 | V355V | gtC | gtT | 2 | 2 | B.1.1.306 | 0.000877 |
ORF1ab/nsp3 | 355 | V355D | gTc | gAc | 2 | 2 | B.1.1.358 | 0.068966 |
ORF1ab/nsp3 | 355 | V355V | gtC | gtT | 2 | 2 | B.1.1.364 | 0.133333 |
ORF1ab/nsp3 | 355 | V355V | gtC | gtA | 2 | 2 | B.1.1.39 | 0.001019 |
ORF1ab/nsp3 | 355 | V355D | gTc | gAc | 2 | 2 | B.1.1.518 | 0.012658 |
ORF1ab/nsp3 | 355 | V355F | Gtc | Ttc | 2 | 2 | B.1.1.7 | 0.000002 |
ORF1ab/nsp3 | 355 | V355V | gtC | gtT | 2 | 2 | B.1.177.60 | 0.000437 |
ORF1ab/nsp3 | 355 | V355V | gtC | gtT | 2 | 2 | B.1.177.65 | 0.001331 |
ORF1ab/nsp3 | 355 | V355V | gtC | gtT | 2 | 2 | B.1.177.76 | 0.004988 |
ORF1ab/nsp3 | 355 | V355V | gtC | gtT | 2 | 2 | B.1.36 | 0.000292 |
ORF1ab/nsp3 | 355 | V355V | gtC | gtT | 2 | 2 | B.1.36.38 | 0.003284 |
ORF1ab/nsp3 | 355 | V355V | gtC | gtT | 2 | 2 | B.1.36.9 | 0.006431 |
ORF1ab/nsp3 | 355 | V355D | gTc | gAc | 2 | 2 | B.1.369 | 0.00057 |
ORF1ab/nsp3 | 355 | V355D | gTc | gAc | 2 | 2 | B.1.377 | 0.009132 |
ORF1ab/nsp3 | 355 | V355V | gtC | gtT | 2 | 2 | B.1.404 | 0.002604 |
ORF1ab/nsp3 | 355 | V355V | gtC | gtT | 2 | 2 | B.1.428 | 0.002041 |
ORF1ab/nsp3 | 355 | V355V | gtC | gtT | 2 | 2 | B.1.444 | 0.031746 |
ORF1ab/nsp3 | 355 | V355I | Gtc | Atc | 2 | 2 | B.1.469 | 0.00722 |
ORF1ab/nsp3 | 355 | V355D | gTc | gAc | 2 | 2 | B.1.517 | 0.000854 |
ORF1ab/nsp3 | 355 | V355V | gtC | gtT | 2 | 2 | B.1.588 | 0.00182 |
ORF1ab/nsp3 | 355 | V355del | GTC | --- | 2 | 2 | B.1.596 | 0.000174 |
ORF1ab/nsp3 | 355 | V355del | GTC | --- | 2 | 2 | B.1.621 | 0.000177 |
ORF1ab/nsp3 | 355 | V355V | gtC | gtT | 2 | 2 | B.1.9.5 | 0.011364 |
ORF1ab/nsp3 | 355 | V355del | GTC | --- | 2 | 2 | P.1.12 | 0.000968 |
ORF1ab/nsp3 | 355 | V355V | gtC | gtT | 2 | 2 | P.1.17 | 0.000324 |
ORF1ab/nsp3 | 355 | V355A | gTc | gCc | 1 | 1 | A.2.4 | 0.003367 |
ORF1ab/nsp3 | 355 | V355G | gTc | gGc | 1 | 1 | A.2.4 | 0.003367 |
ORF1ab/nsp3 | 355 | V355V | gtC | gtT | 1 | 1 | A.2.5 | 0.000499 |
ORF1ab/nsp3 | 355 | V355D | gTc | gAc | 1 | 1 | A.2.5 | 0.000499 |
ORF1ab/nsp3 | 355 | V355V | gtC | gtT | 1 | 1 | A.2.5.2 | 0.001572 |
ORF1ab/nsp3 | 355 | V355V | gtC | gtT | 1 | 1 | A.27 | 0.001656 |
ORF1ab/nsp3 | 355 | V355V | gtC | gtT | 1 | 1 | AA.1 | 0.007246 |
ORF1ab/nsp3 | 355 | V355del2 | gTC | g-- | 1 | 1 | All | 0 |
ORF1ab/nsp3 | 355 | V355del1 | gtC | gt- | 1 | 1 | All | 0 |
ORF1ab/nsp3 | 355 | V355Q | GTC | CAA | 1 | 1 | All | 0 |
ORF1ab/nsp3 | 355 | V355V | gtC | gtT | 1 | 1 | AP.1 | 0.001502 |
ORF1ab/nsp3 | 355 | V355V | gtC | gtT | 1 | 1 | AU.1 | 0.001266 |
ORF1ab/nsp3 | 355 | V355F | Gtc | Ttc | 1 | 1 | AY.100 | 0.000046 |
ORF1ab/nsp3 | 355 | V355V | gtC | gtT | 1 | 1 | AY.101 | 0.00049 |
ORF1ab/nsp3 | 355 | V355F | Gtc | Ttc | 1 | 1 | AY.103 | 0.000006 |
ORF1ab/nsp3 | 355 | V355A | gTc | gCc | 1 | 1 | AY.103 | 0.000006 |
ORF1ab/nsp3 | 355 | V355V | gtC | gtT | 1 | 1 | AY.105 | 0.000643 |
ORF1ab/nsp3 | 355 | V355V | gtC | gtT | 1 | 1 | AY.106 | 0.000335 |
ORF1ab/nsp3 | 355 | V355V | gtC | gtT | 1 | 1 | AY.111 | 0.000183 |
ORF1ab/nsp3 | 355 | V355V | gtC | gtT | 1 | 1 | AY.114 | 0.000231 |
ORF1ab/nsp3 | 355 | V355V | gtC | gtT | 1 | 1 | AY.117 | 0.000085 |
ORF1ab/nsp3 | 355 | V355V | gtC | gtT | 1 | 1 | AY.118 | 0.000063 |
ORF1ab/nsp3 | 355 | V355V | gtC | gtT | 1 | 1 | AY.121 | 0.000135 |
ORF1ab/nsp3 | 355 | V355A | gTc | gCc | 1 | 1 | AY.16 | 0.00038 |
ORF1ab/nsp3 | 355 | V355V | gtC | gtT | 1 | 1 | AY.19 | 0.00114 |
ORF1ab/nsp3 | 355 | V355I | Gtc | Atc | 1 | 1 | AY.2 | 0.000356 |
ORF1ab/nsp3 | 355 | V355A | gTc | gCc | 1 | 1 | AY.20 | 0.000039 |
ORF1ab/nsp3 | 355 | V355I | Gtc | Atc | 1 | 1 | AY.23 | 0.00007 |
ORF1ab/nsp3 | 355 | V355V | gtC | gtT | 1 | 1 | AY.23.1 | 0.000417 |
ORF1ab/nsp3 | 355 | V355F | Gtc | Ttc | 1 | 1 | AY.24 | 0.000431 |
ORF1ab/nsp3 | 355 | V355F | Gtc | Ttc | 1 | 1 | AY.25 | 0.000006 |
ORF1ab/nsp3 | 355 | V355I | Gtc | Atc | 1 | 1 | AY.25 | 0.000006 |
ORF1ab/nsp3 | 355 | V355A | gTc | gCc | 1 | 1 | AY.25 | 0.000006 |
ORF1ab/nsp3 | 355 | V355G | gTc | gGc | 1 | 1 | AY.25 | 0.000006 |
ORF1ab/nsp3 | 355 | V355V | gtC | gtT | 1 | 1 | AY.34.1 | 0.00051 |
ORF1ab/nsp3 | 355 | V355F | Gtc | Ttc | 1 | 1 | AY.34.1 | 0.00051 |
ORF1ab/nsp3 | 355 | V355V | gtC | gtT | 1 | 1 | AY.35 | 0.000233 |
ORF1ab/nsp3 | 355 | V355V | gtC | gtT | 1 | 1 | AY.36 | 0.000148 |
ORF1ab/nsp3 | 355 | V355V | gtC | gtT | 1 | 1 | AY.39.1.1 | 0.000725 |
ORF1ab/nsp3 | 355 | V355V | gtC | gtT | 1 | 1 | AY.39.2 | 0.001541 |
ORF1ab/nsp3 | 355 | V355V | gtC | gtT | 1 | 1 | AY.4.4 | 0.000409 |
ORF1ab/nsp3 | 355 | V355del | GTC | --- | 1 | 1 | AY.4.5 | 0.000107 |
ORF1ab/nsp3 | 355 | V355del | GTC | --- | 1 | 1 | AY.43 | 0.000004 |
ORF1ab/nsp3 | 355 | V355D | gTc | gAc | 1 | 1 | AY.43 | 0.000004 |
ORF1ab/nsp3 | 355 | V355L | Gtc | Ctc | 1 | 1 | AY.43 | 0.000004 |
ORF1ab/nsp3 | 355 | V355A | gTc | gCc | 1 | 1 | AY.44 | 0.000006 |
ORF1ab/nsp3 | 355 | V355V | gtC | gtT | 1 | 1 | AY.46.1 | 0.001027 |
ORF1ab/nsp3 | 355 | V355V | gtC | gtT | 1 | 1 | AY.46.5 | 0.000198 |
ORF1ab/nsp3 | 355 | V355F | Gtc | Ttc | 1 | 1 | AY.46.6 | 0.000072 |
ORF1ab/nsp3 | 355 | V355I | Gtc | Atc | 1 | 1 | AY.5 | 0.000021 |
ORF1ab/nsp3 | 355 | V355V | gtC | gtT | 1 | 1 | AY.52 | 0.000814 |
ORF1ab/nsp3 | 355 | V355V | gtC | gtT | 1 | 1 | AY.53 | 0.000288 |
ORF1ab/nsp3 | 355 | V355V | gtC | gtT | 1 | 1 | AY.57 | 0.000656 |
ORF1ab/nsp3 | 355 | V355V | gtC | gtT | 1 | 1 | AY.59 | 0.00053 |
ORF1ab/nsp3 | 355 | V355V | gtC | gtT | 1 | 1 | AY.63 | 0.000387 |
ORF1ab/nsp3 | 355 | V355V | gtC | gtT | 1 | 1 | AY.70 | 0.000209 |
ORF1ab/nsp3 | 355 | V355I | Gtc | Atc | 1 | 1 | AY.71 | 0.000475 |
ORF1ab/nsp3 | 355 | V355V | gtC | gtG | 1 | 1 | AY.71 | 0.000475 |
ORF1ab/nsp3 | 355 | V355I | Gtc | Atc | 1 | 1 | AY.73 | 0.000665 |
ORF1ab/nsp3 | 355 | V355V | gtC | gtT | 1 | 1 | AY.75.1 | 0.00018 |
ORF1ab/nsp3 | 355 | V355I | Gtc | Atc | 1 | 1 | AY.78 | 0.001541 |
ORF1ab/nsp3 | 355 | V355V | gtC | gtT | 1 | 1 | AY.8 | 0.000606 |
ORF1ab/nsp3 | 355 | V355I | Gtc | Atc | 1 | 1 | AY.84 | 0.000437 |
ORF1ab/nsp3 | 355 | V355V | gtC | gtT | 1 | 1 | AY.87 | 0.000833 |
ORF1ab/nsp3 | 355 | V355F | Gtc | Ttc | 1 | 1 | AY.9.1 | 0.000084 |
ORF1ab/nsp3 | 355 | V355V | gtC | gtT | 1 | 1 | AY.90 | 0.000684 |
ORF1ab/nsp3 | 355 | V355V | gtC | gtT | 1 | 1 | AY.93 | 0.000273 |
ORF1ab/nsp3 | 355 | V355V | gtC | gtT | 1 | 1 | AY.95 | 0.000761 |
ORF1ab/nsp3 | 355 | V355V | gtC | gtT | 1 | 1 | AZ.2 | 0.000821 |
ORF1ab/nsp3 | 355 | V355I | Gtc | Atc | 1 | 1 | B | 0.000128 |
ORF1ab/nsp3 | 355 | V355del1 | gtC | gt- | 1 | 1 | B.1 | 0.000009 |
ORF1ab/nsp3 | 355 | V355I | Gtc | Atc | 1 | 1 | B.1 | 0.000009 |
ORF1ab/nsp3 | 355 | V355del | GTC | --- | 1 | 1 | B.1.1 | 0.000018 |
ORF1ab/nsp3 | 355 | V355V | gtC | gtT | 1 | 1 | B.1.1.1 | 0.000327 |
ORF1ab/nsp3 | 355 | V355V | gtC | gtT | 1 | 1 | B.1.1.141 | 0.002012 |
ORF1ab/nsp3 | 355 | V355V | gtC | gtT | 1 | 1 | B.1.1.176 | 0.000439 |
ORF1ab/nsp3 | 355 | V355V | gtC | gtG | 1 | 1 | B.1.1.177 | 0.019231 |
ORF1ab/nsp3 | 355 | V355V | gtC | gtT | 1 | 1 | B.1.1.204 | 0.00304 |
ORF1ab/nsp3 | 355 | V355A | gTc | gCc | 1 | 1 | B.1.1.214 | 0.000055 |
ORF1ab/nsp3 | 355 | V355V | gtC | gtT | 1 | 1 | B.1.1.220 | 0.001859 |
ORF1ab/nsp3 | 355 | V355V | gtC | gtT | 1 | 1 | B.1.1.258 | 0.003257 |
ORF1ab/nsp3 | 355 | V355F | Gtc | Ttc | 1 | 1 | B.1.1.277 | 0.000759 |
ORF1ab/nsp3 | 355 | V355D | gTc | gAc | 1 | 1 | B.1.1.316 | 0.000925 |
ORF1ab/nsp3 | 355 | V355V | gtC | gtT | 1 | 1 | B.1.1.316 | 0.000925 |
ORF1ab/nsp3 | 355 | V355D | gTc | gAc | 1 | 1 | B.1.1.322 | 0.008772 |
ORF1ab/nsp3 | 355 | V355del | GTC | --- | 1 | 1 | B.1.1.33 | 0.000421 |
ORF1ab/nsp3 | 355 | V355V | gtC | gtT | 1 | 1 | B.1.1.351 | 0.002793 |
ORF1ab/nsp3 | 355 | V355V | gtC | gtT | 1 | 1 | B.1.1.372 | 0.000689 |
ORF1ab/nsp3 | 355 | V355D | gTc | gAc | 1 | 1 | B.1.1.380 | 0.009804 |
ORF1ab/nsp3 | 355 | V355V | gtC | gtT | 1 | 1 | B.1.1.398 | 0.003226 |
ORF1ab/nsp3 | 355 | V355V | gtC | gtA | 1 | 1 | B.1.1.409 | 0.002833 |
ORF1ab/nsp3 | 355 | V355V | gtC | gtT | 1 | 1 | B.1.1.412 | 0.007634 |
ORF1ab/nsp3 | 355 | V355D | gTc | gAc | 1 | 1 | B.1.1.418 | 0.022727 |
ORF1ab/nsp3 | 355 | V355D | gTc | gAc | 1 | 1 | B.1.1.434 | 0.000349 |
ORF1ab/nsp3 | 355 | V355V | gtC | gtT | 1 | 1 | B.1.1.47 | 0.005348 |
ORF1ab/nsp3 | 355 | V355V | gtC | gtT | 1 | 1 | B.1.1.51 | 0.001718 |
ORF1ab/nsp3 | 355 | V355D | gTc | gAc | 1 | 1 | B.1.1.517 | 0.006803 |
ORF1ab/nsp3 | 355 | V355V | gtC | gtT | 1 | 1 | B.1.1.523 | 0.001563 |
ORF1ab/nsp3 | 355 | V355F | Gtc | Ttc | 1 | 1 | B.1.1.61 | 0.008772 |
ORF1ab/nsp3 | 355 | V355del2 | gTC | g-- | 1 | 1 | B.1.1.7 | 0.000001 |
ORF1ab/nsp3 | 355 | V355V | gtC | gtT | 1 | 1 | B.1.1.71 | 0.006061 |
ORF1ab/nsp3 | 355 | V355del | GTC | --- | 1 | 1 | B.1.160 | 0.000031 |
ORF1ab/nsp3 | 355 | V355V | gtC | gtT | 1 | 1 | B.1.160.16 | 0.000929 |
ORF1ab/nsp3 | 355 | V355V | gtC | gtT | 1 | 1 | B.1.170 | 0.00431 |
ORF1ab/nsp3 | 355 | V355A | gTc | gCc | 1 | 1 | B.1.177 | 0.000013 |
ORF1ab/nsp3 | 355 | V355V | gtC | gtT | 1 | 1 | B.1.177.10 | 0.000878 |
ORF1ab/nsp3 | 355 | V355D | gTc | gAc | 1 | 1 | B.1.177.21 | 0.000076 |
ORF1ab/nsp3 | 355 | V355F | Gtc | Ttc | 1 | 1 | B.1.177.21 | 0.000076 |
ORF1ab/nsp3 | 355 | V355V | gtC | gtT | 1 | 1 | B.1.177.4 | 0.000211 |
ORF1ab/nsp3 | 355 | V355V | gtC | gtT | 1 | 1 | B.1.177.7 | 0.000165 |
ORF1ab/nsp3 | 355 | V355V | gtC | gtT | 1 | 1 | B.1.177.75 | 0.001041 |
ORF1ab/nsp3 | 355 | V355V | gtC | gtT | 1 | 1 | B.1.177.81 | 0.000189 |
ORF1ab/nsp3 | 355 | V355V | gtC | gtT | 1 | 1 | B.1.201 | 0.005682 |
ORF1ab/nsp3 | 355 | V355D | gTc | gAc | 1 | 1 | B.1.203 | 0.0625 |
ORF1ab/nsp3 | 355 | V355V | gtC | gtT | 1 | 1 | B.1.206 | 0.000816 |
ORF1ab/nsp3 | 355 | V355V | gtC | gtT | 1 | 1 | B.1.210 | 0.002132 |
ORF1ab/nsp3 | 355 | V355del | GTC | --- | 1 | 1 | B.1.218 | 0.005155 |
ORF1ab/nsp3 | 355 | V355V | gtC | gtT | 1 | 1 | B.1.221 | 0.000071 |
ORF1ab/nsp3 | 355 | V355D | gTc | gAc | 1 | 1 | B.1.239 | 0.001221 |
ORF1ab/nsp3 | 355 | V355I | Gtc | Atc | 1 | 1 | B.1.243 | 0.00007 |
ORF1ab/nsp3 | 355 | V355V | gtC | gtT | 1 | 1 | B.1.252 | 0.006623 |
ORF1ab/nsp3 | 355 | V355Q | GTC | CAA | 1 | 1 | B.1.258.17 | 0.000104 |
ORF1ab/nsp3 | 355 | V355V | gtC | gtG | 1 | 1 | B.1.320 | 0.001245 |
ORF1ab/nsp3 | 355 | V355V | gtC | gtT | 1 | 1 | B.1.336 | 0.002439 |
ORF1ab/nsp3 | 355 | V355V | gtC | gtT | 1 | 1 | B.1.351.2 | 0.000303 |
ORF1ab/nsp3 | 355 | V355del | GTC | --- | 1 | 1 | B.1.36 | 0.000146 |
ORF1ab/nsp3 | 355 | V355A | gTc | gCc | 1 | 1 | B.1.36 | 0.000146 |
ORF1ab/nsp3 | 355 | V355V | gtC | gtT | 1 | 1 | B.1.36.1 | 0.00114 |
ORF1ab/nsp3 | 355 | V355I | Gtc | Atc | 1 | 1 | B.1.36.18 | 0.00042 |
ORF1ab/nsp3 | 355 | V355D | gTc | gAc | 1 | 1 | B.1.36.8 | 0.001 |
ORF1ab/nsp3 | 355 | V355A | gTc | gCc | 1 | 1 | B.1.383 | 0.009009 |
ORF1ab/nsp3 | 355 | V355V | gtC | gtT | 1 | 1 | B.1.389 | 0.001002 |
ORF1ab/nsp3 | 355 | V355D | gTc | gAc | 1 | 1 | B.1.396 | 0.000706 |
ORF1ab/nsp3 | 355 | V355D | gTc | gAc | 1 | 1 | B.1.399 | 0.001934 |
ORF1ab/nsp3 | 355 | V355V | gtC | gtT | 1 | 1 | B.1.400 | 0.000429 |
ORF1ab/nsp3 | 355 | V355D | gTc | gAc | 1 | 1 | B.1.403 | 0.003268 |
ORF1ab/nsp3 | 355 | V355D | gTc | gAc | 1 | 1 | B.1.409 | 0.000781 |
ORF1ab/nsp3 | 355 | V355I | Gtc | Atc | 1 | 1 | B.1.427 | 0.00005 |
ORF1ab/nsp3 | 355 | V355del | GTC | --- | 1 | 1 | B.1.429 | 0.000024 |
ORF1ab/nsp3 | 355 | V355I | Gtc | Atc | 1 | 1 | B.1.438.1 | 0.000107 |
ORF1ab/nsp3 | 355 | V355V | gtC | gtT | 1 | 1 | B.1.453 | 0.003236 |
ORF1ab/nsp3 | 355 | V355V | gtC | gtA | 1 | 1 | B.1.456 | 0.003268 |
ORF1ab/nsp3 | 355 | V355V | gtC | gtT | 1 | 1 | B.1.462 | 0.007246 |
ORF1ab/nsp3 | 355 | V355V | gtC | gtT | 1 | 1 | B.1.470 | 0.001404 |
ORF1ab/nsp3 | 355 | V355V | gtC | gtT | 1 | 1 | B.1.497 | 0.000315 |
ORF1ab/nsp3 | 355 | V355I | Gtc | Atc | 1 | 1 | B.1.525 | 0.000113 |
ORF1ab/nsp3 | 355 | V355del | GTC | --- | 1 | 1 | B.1.526 | 0.000024 |
ORF1ab/nsp3 | 355 | V355V | gtC | gtT | 1 | 1 | B.1.560 | 0.00463 |
ORF1ab/nsp3 | 355 | V355V | gtC | gtT | 1 | 1 | B.1.561 | 0.000397 |
ORF1ab/nsp3 | 355 | V355D | gTc | gAc | 1 | 1 | B.1.577 | 0.000687 |
ORF1ab/nsp3 | 355 | V355del | GTC | --- | 1 | 1 | B.1.595 | 0.000261 |
ORF1ab/nsp3 | 355 | V355L | Gtc | Ctc | 1 | 1 | B.1.596 | 0.000087 |
ORF1ab/nsp3 | 355 | V355V | gtC | gtT | 1 | 1 | B.1.597 | 0.00463 |
ORF1ab/nsp3 | 355 | V355del | GTC | --- | 1 | 1 | B.1.617.2 | 0.000004 |
ORF1ab/nsp3 | 355 | V355L | Gtc | Ctc | 1 | 1 | B.1.617.2 | 0.000004 |
ORF1ab/nsp3 | 355 | V355V | gtC | gtT | 1 | 1 | B.1.620 | 0.000946 |
ORF1ab/nsp3 | 355 | V355V | gtC | gtT | 1 | 1 | B.1.621.1 | 0.000506 |
ORF1ab/nsp3 | 355 | V355V | gtC | gtT | 1 | 1 | B.1.623 | 0.000536 |
ORF1ab/nsp3 | 355 | V355I | Gtc | Atc | 1 | 1 | B.1.628 | 0.000352 |
ORF1ab/nsp3 | 355 | V355V | gtC | gtT | 1 | 1 | B.1.631 | 0.003367 |
ORF1ab/nsp3 | 355 | V355V | gtC | gtT | 1 | 1 | B.3.1 | 0.001658 |
ORF1ab/nsp3 | 355 | V355del | GTC | --- | 1 | 1 | B.4.4 | 0.018868 |
ORF1ab/nsp3 | 355 | V355del | GTC | --- | 1 | 1 | B.57 | 0.015152 |
ORF1ab/nsp3 | 355 | V355V | gtC | gtT | 1 | 1 | B.6 | 0.00091 |
ORF1ab/nsp3 | 355 | V355V | gtC | gtA | 1 | 1 | B.6.6 | 0.000889 |
ORF1ab/nsp3 | 355 | V355V | gtC | gtT | 1 | 1 | C.2.1 | 0.006667 |
ORF1ab/nsp3 | 355 | V355V | gtC | gtT | 1 | 1 | C.4 | 0.01 |
ORF1ab/nsp3 | 355 | V355G | gTc | gGc | 1 | 1 | D.2 | 0.000075 |
ORF1ab/nsp3 | 355 | V355V | gtC | gtG | 1 | 1 | N.2 | 0.038462 |
ORF1ab/nsp3 | 355 | V355del | GTC | --- | 1 | 1 | N.6 | 0.007092 |
ORF1ab/nsp3 | 355 | V355A | gTc | gCc | 1 | 1 | P.1 | 0.000016 |
ORF1ab/nsp3 | 355 | V355del | GTC | --- | 1 | 1 | P.1 | 0.000016 |
ORF1ab/nsp3 | 355 | V355D | gTc | gAc | 1 | 1 | P.1 | 0.000016 |
ORF1ab/nsp3 | 355 | V355V | gtC | gtG | 1 | 1 | P.1.12 | 0.000484 |
ORF1ab/nsp3 | 355 | V355V | gtC | gtT | 1 | 1 | P.1.2 | 0.001156 |
ORF1ab/nsp3 | 355 | V355V | gtC | gtT | 1 | 1 | P.1.6 | 0.001946 |
ORF1ab/nsp3 | 355 | V355V | gtC | gtT | 1 | 1 | P.1.7 | 0.000319 |
ORF1ab/nsp3 | 355 | V355V | gtC | gtT | 1 | 1 | P.4 | 0.003802 |
ORF1ab/nsp3 | 355 | V355A | gTc | gCc | 1 | 1 | P.4 | 0.003802 |
ORF1ab/nsp3 | 355 | V355A | gTc | gCc | 1 | 1 | Q.3 | 0.000145 |
ORF1ab/nsp3 | 355 | V355A | gTc | gCc | 1 | 1 | Q.8 | 0.000165 |
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CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk
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