CoV-GLUEGenomeCountriesLineagesMutationsInsertionsDeletionsUpdated:

CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF1ab/nsp3 : CodonNum = 355

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF1ab/nsp3355V355VV1173VsyngtCgtT680567150.9867743782-3784
ORF1ab/nsp3355V355VV1173VsyngtCgtA6805700.01028663782-3784
ORF1ab/nsp3355V355VV1173VsyngtCgtG6805200.002939023782-3784
ORF1ab/nsp3355V355DV1173DnonsyngTcgAc155115500.9993553782-3784
ORF1ab/nsp3355V355DV1173DnonsyngTCgAT155110.0006447453782-3784
ORF1ab/nsp3355V355IV1173InonsynGtcAtc6626600.9969793782-3784
ORF1ab/nsp3355V355IV1173InonsynGtCAtT66220.003021153782-3784
ORF1ab/nsp3355V355LV1173LnonsynGtcCtc79780.9873423782-3784
ORF1ab/nsp3355V355LV1173LnonsynGtCCtT7910.01265823782-3784
ORF1ab/nsp3355V355AV1173AnonsyngTcgCc78750.9615383782-3784
ORF1ab/nsp3355V355AV1173AnonsyngTCgCT7830.03846153782-3784
ORF1ab/nsp3355V355delV1173deldelGTC---393913782-3784
ORF1ab/nsp3355V355FV1173FnonsynGtcTtc25220.883782-3784
ORF1ab/nsp3355V355FV1173FnonsynGtCTtT2530.123782-3784
ORF1ab/nsp3355V355GV1173GnonsyngTcgGc1170.6363643782-3784
ORF1ab/nsp3355V355GV1173GnonsyngTCgGT1140.3636363782-3784
ORF1ab/nsp3355V355CV1173CnonsynGTCTGT630.53782-3784
ORF1ab/nsp3355V355CV1173CnonsynGTcTGc630.53782-3784
ORF1ab/nsp3355V355SV1173SnonsynGTcAGc620.3333333782-3784
ORF1ab/nsp3355V355SV1173SnonsynGTCAGT620.3333333782-3784
ORF1ab/nsp3355V355SV1173SnonsynGTCTCT610.1666673782-3784
ORF1ab/nsp3355V355SV1173SnonsynGTcTCc610.1666673782-3784
ORF1ab/nsp3355V355RV1173RnonsynGTCCGT210.53782-3784
ORF1ab/nsp3355V355RV1173RnonsynGTcCGc210.53782-3784
ORF1ab/nsp3355V355PV1173PnonsynGTCCCT210.53782-3784
ORF1ab/nsp3355V355PV1173PnonsynGTcCCc210.53782-3784
ORF1ab/nsp3355V355TV1173TnonsynGTCACT210.53782-3784
ORF1ab/nsp3355V355TV1173TnonsynGTcACc210.53782-3784
ORF1ab/nsp3355V355QV1173QnonsynGTCCAA1113782-3784
ORF1ab/nsp3355V355del2V1173del2delgTCg--1113782-3784
ORF1ab/nsp3355V355del1V1173del1delgtCgt-1113782-3784

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF1ab/nsp3355V355VgtCgtT67156805All0.001284
ORF1ab/nsp3355V355VgtCgtA706805All0.000013
ORF1ab/nsp3355V355VgtCgtG206805All0.000004
ORF1ab/nsp3355V355DgTcgAc15501551All0.000296
ORF1ab/nsp3355V355DgTCgAT11551All0
ORF1ab/nsp3355V355VgtCgtT10211021AY.250.006141
ORF1ab/nsp3355V355VgtCgtT905909B.1.1.70.00081
ORF1ab/nsp3355V355VgtCgtG2909B.1.1.70.000002
ORF1ab/nsp3355V355VgtCgtA2909B.1.1.70.000002
ORF1ab/nsp3355V355DgTcgAc819820B.1.4290.01927
ORF1ab/nsp3355V355DgTCgAT1820B.1.4290.000024
ORF1ab/nsp3355V355IGtcAtc660662All0.000126
ORF1ab/nsp3355V355IGtCAtT2662All0
ORF1ab/nsp3355V355IGtcAtc524524B.1.1.70.000469
ORF1ab/nsp3355V355VgtCgtT486488AY.30.004834
ORF1ab/nsp3355V355VgtCgtA2488AY.30.00002
ORF1ab/nsp3355V355VgtCgtT479479B.1.617.20.001804
ORF1ab/nsp3355V355VgtCgtT451454AY.40.000702
ORF1ab/nsp3355V355VgtCgtA3454AY.40.000005
ORF1ab/nsp3355V355VgtCgtT337337B.1.6090.161553
ORF1ab/nsp3355V355VgtCgtT236236B.1.2430.016422
ORF1ab/nsp3355V355DgTcgAc221221B.1.4270.01116
ORF1ab/nsp3355V355DgTcgAc208208B.1.20.001832
ORF1ab/nsp3355V355VgtCgtT184184B.1.10.003338
ORF1ab/nsp3355V355VgtCgtT146157B.1.20.001286
ORF1ab/nsp3355V355VgtCgtA10157B.1.20.000088
ORF1ab/nsp3355V355VgtCgtG1157B.1.20.000009
ORF1ab/nsp3355V355VgtCgtT143144B.10.00131
ORF1ab/nsp3355V355VgtCgtA1144B.10.000009
ORF1ab/nsp3355V355VgtCgtT140142AY.430.00062
ORF1ab/nsp3355V355VgtCgtA1142AY.430.000004
ORF1ab/nsp3355V355VgtCgtG1142AY.430.000004
ORF1ab/nsp3355V355VgtCgtT140140AY.1030.000869
ORF1ab/nsp3355V355VgtCgtT138139AY.50.00285
ORF1ab/nsp3355V355VgtCgtA1139AY.50.000021
ORF1ab/nsp3355V355VgtCgtT122122B.1.1770.001606
ORF1ab/nsp3355V355VgtCgtT9898B.1.3370.547486
ORF1ab/nsp3355V355VgtCgtT9393AY.9.10.007786
ORF1ab/nsp3355V355VgtCgtT8383AY.9.20.003049
ORF1ab/nsp3355V355VgtCgtT8080B.1.1.2630.124611
ORF1ab/nsp3355V355LGtcCtc7879All0.000015
ORF1ab/nsp3355V355LGtCCtT179All0
ORF1ab/nsp3355V355AgTcgCc7578All0.000014
ORF1ab/nsp3355V355AgTCgCT378All0.000001
ORF1ab/nsp3355V355IGtcAtc7676B.1.1600.00237
ORF1ab/nsp3355V355LGtcCtc7272B.1.5410.318584
ORF1ab/nsp3355V355VgtCgtT6363AY.980.004977
ORF1ab/nsp3355V355VgtCgtT5253AY.440.000317
ORF1ab/nsp3355V355VgtCgtG153AY.440.000006
ORF1ab/nsp3355V355VgtCgtT4343B.1.1590.52439
ORF1ab/nsp3355V355VgtCgtT4343B.1.1600.001341
ORF1ab/nsp3355V355VgtCgtT4041B.1.4290.000941
ORF1ab/nsp3355V355VgtCgtA141B.1.4290.000024
ORF1ab/nsp3355V355delGTC---3939All0.000007
ORF1ab/nsp3355V355VgtCgtT3838AY.4.20.000824
ORF1ab/nsp3355V355VgtCgtT3737B.1.1.1890.055976
ORF1ab/nsp3355V355DgTcgAc3737B.1.2430.002575
ORF1ab/nsp3355V355VgtCgtT3636AY.98.10.001744
ORF1ab/nsp3355V355VgtCgtT3031AY.290.000473
ORF1ab/nsp3355V355VgtCgtA131AY.290.000016
ORF1ab/nsp3355V355VgtCgtT3131P.10.000488
ORF1ab/nsp3355V355DgTcgAc3030B.10.000275
ORF1ab/nsp3355V355VgtCgtT2929B.1.177.190.041488
ORF1ab/nsp3355V355VgtCgtA2728B.1.5960.002353
ORF1ab/nsp3355V355VgtCgtT128B.1.5960.000087
ORF1ab/nsp3355V355VgtCgtT2727B.1.3510.000803
ORF1ab/nsp3355V355VgtCgtT2626B.1.1.5190.001032
ORF1ab/nsp3355V355FGtcTtc2225All0.000004
ORF1ab/nsp3355V355FGtCTtT325All0.000001
ORF1ab/nsp3355V355VgtCgtT2424B.1.1.250.013644
ORF1ab/nsp3355V355VgtCgtT2424B.1.258.150.45283
ORF1ab/nsp3355V355DgTcgAc2424B.1.5610.009528
ORF1ab/nsp3355V355VgtCgtT2323AY.5.30.00776
ORF1ab/nsp3355V355DgTcgAc2323B.1.1.5190.000913
ORF1ab/nsp3355V355VgtCgtT1222B.1.438.10.001287
ORF1ab/nsp3355V355VgtCgtG1022B.1.438.10.001073
ORF1ab/nsp3355V355VgtCgtT2222C.370.002553
ORF1ab/nsp3355V355VgtCgtT2021AY.200.000777
ORF1ab/nsp3355V355VgtCgtA121AY.200.000039
ORF1ab/nsp3355V355DgTcgAc2121B.1.3670.01664
ORF1ab/nsp3355V355VgtCgtT2020B.1.1.4640.029455
ORF1ab/nsp3355V355VgtCgtT1919AY.39.10.000753
ORF1ab/nsp3355V355VgtCgtT1818AY.1020.000477
ORF1ab/nsp3355V355VgtCgtT1616AY.4.50.00172
ORF1ab/nsp3355V355VgtCgtT1616B.1.2340.002111
ORF1ab/nsp3355V355AgTcgCc1616B.1.2340.002111
ORF1ab/nsp3355V355VgtCgtT1515AY.3.10.001279
ORF1ab/nsp3355V355DgTcgAc1515B.1.10.000272
ORF1ab/nsp3355V355VgtCgtT1515B.1.1.2220.00306
ORF1ab/nsp3355V355DgTcgAc1515B.1.1.2220.00306
ORF1ab/nsp3355V355VgtCgtT1515B.1.1.4340.005228
ORF1ab/nsp3355V355VgtCgtT1414AY.260.000396
ORF1ab/nsp3355V355VgtCgtT1414AY.390.000346
ORF1ab/nsp3355V355IGtcAtc1414AY.440.000085
ORF1ab/nsp3355V355VgtCgtT1414B.1.3690.003993
ORF1ab/nsp3355V355VgtCgtT1313AY.230.000907
ORF1ab/nsp3355V355VgtCgtT1313B.1.4270.000656
ORF1ab/nsp3355V355VgtCgtT1213D.20.0009
ORF1ab/nsp3355V355VgtCgtA113D.20.000075
ORF1ab/nsp3355V355VgtCgtT1212AY.46.60.000866
ORF1ab/nsp3355V355DgTcgAc1212B.1.1.4160.01086
ORF1ab/nsp3355V355DgTcgAc1212B.1.1260.015306
ORF1ab/nsp3355V355VgtCgtT1212B.1.5950.003132
ORF1ab/nsp3355V355GgTcgGc711All0.000001
ORF1ab/nsp3355V355GgTCgGT411All0.000001
ORF1ab/nsp3355V355AgTcgCc1111B.1.4260.0111
ORF1ab/nsp3355V355VgtCgtT1111B.1.5510.014194
ORF1ab/nsp3355V355VgtCgtT1111P.20.002053
ORF1ab/nsp3355V355VgtCgtT1010AY.420.000402
ORF1ab/nsp3355V355VgtCgtT1010B.1.1.1680.263158
ORF1ab/nsp3355V355VgtCgtT1010B.1.177.210.000765
ORF1ab/nsp3355V355DgTcgAc1010B.1.4040.013021
ORF1ab/nsp3355V355VgtCgtT1010B.1.6210.000885
ORF1ab/nsp3355V355VgtCgtT99AY.1000.000414
ORF1ab/nsp3355V355VgtCgtT99AY.1160.002581
ORF1ab/nsp3355V355VgtCgtT89AY.1190.000282
ORF1ab/nsp3355V355VgtCgtA19AY.1190.000035
ORF1ab/nsp3355V355VgtCgtT99AY.1200.000335
ORF1ab/nsp3355V355VgtCgtT99AY.130.001449
ORF1ab/nsp3355V355VgtCgtT99B.1.1.2160.008014
ORF1ab/nsp3355V355DgTcgAc99B.1.2320.004836
ORF1ab/nsp3355V355DgTcgAc99B.1.2340.001187
ORF1ab/nsp3355V355VgtCgtT99B.1.258.140.008824
ORF1ab/nsp3355V355IGtcAtc680.333333
ORF1ab/nsp3355V355IGtCAtT280.111111
ORF1ab/nsp3355V355IGtcAtc88AY.40.000012
ORF1ab/nsp3355V355VgtCgtT88AY.470.000249
ORF1ab/nsp3355V355VgtCgtT88B.1.1.280.00249
ORF1ab/nsp3355V355VgtCgtT88B.1.258.170.000832
ORF1ab/nsp3355V355VgtCgtT88B.1.5260.000188
ORF1ab/nsp3355V355VgtCgtT88B.1.5750.002427
ORF1ab/nsp3355V355VgtCgtT77A.23.10.00493
ORF1ab/nsp3355V355AgTcgCc77AY.230.000488
ORF1ab/nsp3355V355VgtCgtT77B.1.1.630.002701
ORF1ab/nsp3355V355VgtCgtT77B.1.177.860.001284
ORF1ab/nsp3355V355VgtCgtT77B.1.221.20.028112
ORF1ab/nsp3355V355DgTcgAc77B.1.2410.005682
ORF1ab/nsp3355V355VgtCgtT77B.1.2580.000466
ORF1ab/nsp3355V355VgtCgtA77B.1.36.190.064815
ORF1ab/nsp3355V355VgtCgtT77B.1.466.20.002739
ORF1ab/nsp3355V355GgTCgGT360.166667
ORF1ab/nsp3355V355GgTcgGc360.166667
ORF1ab/nsp3355V355SGTcAGc260.111111
ORF1ab/nsp3355V355SGTCAGT260.111111
ORF1ab/nsp3355V355SGTcTCc160.055556
ORF1ab/nsp3355V355SGTCTCT160.055556
ORF1ab/nsp3355V355CGTcTGc36All0.000001
ORF1ab/nsp3355V355CGTCTGT36All0.000001
ORF1ab/nsp3355V355SGTCAGT26All0
ORF1ab/nsp3355V355SGTcAGc26All0
ORF1ab/nsp3355V355SGTcTCc16All0
ORF1ab/nsp3355V355SGTCTCT16All0
ORF1ab/nsp3355V355VgtCgtT66AY.20.002137
ORF1ab/nsp3355V355VgtCgtT66AY.330.000401
ORF1ab/nsp3355V355VgtCgtT66AY.610.000629
ORF1ab/nsp3355V355VgtCgtT66AY.750.000336
ORF1ab/nsp3355V355AgTcgCc66B.1.1.70.000005
ORF1ab/nsp3355V355DgTcgAc66B.1.1.70.000005
ORF1ab/nsp3355V355VgtCgtT66B.1.110.30.00431
ORF1ab/nsp3355V355VgtCgtT66B.1.4740.011407
ORF1ab/nsp3355V355VgtCgtT66B.1.5460.022222
ORF1ab/nsp3355V355VgtCgtT66B.1.6370.000438
ORF1ab/nsp3355V355VgtCgtT55AY.1130.000712
ORF1ab/nsp3355V355VgtCgtT55AY.450.000608
ORF1ab/nsp3355V355VgtCgtT55AY.840.002187
ORF1ab/nsp3355V355VgtCgtT55AY.920.001436
ORF1ab/nsp3355V355VgtCgtT55B.1.1.4330.007123
ORF1ab/nsp3355V355delGTC---55B.1.1.70.000004
ORF1ab/nsp3355V355VgtCgtT55B.1.1.910.833333
ORF1ab/nsp3355V355delGTC---55B.1.20.000044
ORF1ab/nsp3355V355VgtCgtT55B.1.36.170.00247
ORF1ab/nsp3355V355VgtCgtT55B.1.5640.002129
ORF1ab/nsp3355V355DgTcgAc55B.1.5650.004052
ORF1ab/nsp3355V355VgtCgtT55C.36.30.002836
ORF1ab/nsp3355V355VgtCgtT55N.50.008834
ORF1ab/nsp3355V355LGtcCtc340.166667
ORF1ab/nsp3355V355FGtCTtT240.111111
ORF1ab/nsp3355V355CGTCTGT240.111111
ORF1ab/nsp3355V355CGTcTGc240.111111
ORF1ab/nsp3355V355AgTCgCT240.111111
ORF1ab/nsp3355V355AgTcgCc240.111111
ORF1ab/nsp3355V355FGtcTtc240.111111
ORF1ab/nsp3355V355LGtCCtT140.055556
ORF1ab/nsp3355V355VgtCgtT44AY.270.000259
ORF1ab/nsp3355V355VgtCgtT44AY.340.000388
ORF1ab/nsp3355V355AgTcgCc44AY.40.000006
ORF1ab/nsp3355V355delGTC---44AY.40.000006
ORF1ab/nsp3355V355VgtCgtT44AY.46.40.000658
ORF1ab/nsp3355V355VgtCgtT44AY.60.000165
ORF1ab/nsp3355V355VgtCgtT44AY.810.007968
ORF1ab/nsp3355V355VgtCgtT44AY.90.00027
ORF1ab/nsp3355V355delGTC---44B.10.000037
ORF1ab/nsp3355V355VgtCgtT44B.1.1.2940.005063
ORF1ab/nsp3355V355VgtCgtT44B.1.1.3180.001207
ORF1ab/nsp3355V355DgTcgAc44B.1.1.3350.051948
ORF1ab/nsp3355V355DgTcgAc44B.1.1.4320.005063
ORF1ab/nsp3355V355VgtCgtT44B.1.1040.01476
ORF1ab/nsp3355V355VgtCgtT44B.1.30.010471
ORF1ab/nsp3355V355DgTcgAc44B.1.4000.001716
ORF1ab/nsp3355V355VgtCgtT44B.1.5250.000453
ORF1ab/nsp3355V355DgTcgAc44B.1.5510.005161
ORF1ab/nsp3355V355VgtCgtT44B.1.5770.002749
ORF1ab/nsp3355V355DgTcgAc44B.1.5960.000349
ORF1ab/nsp3355V355IGtcAtc44B.1.617.20.000015
ORF1ab/nsp3355V355VgtCgtT44B.1.6180.016129
ORF1ab/nsp3355V355VgtCgtT44B.1.6280.001409
ORF1ab/nsp3355V355FGtcTtc44D.20.0003
ORF1ab/nsp3355V355VgtCgtT44Q.80.00066
ORF1ab/nsp3355V355VgtCgtT330.166667
ORF1ab/nsp3355V355VgtCgtT33A.10.000846
ORF1ab/nsp3355V355IGtcAtc33AD.20.000657
ORF1ab/nsp3355V355VgtCgtT33AY.1080.003308
ORF1ab/nsp3355V355VgtCgtA33AY.1090.002219
ORF1ab/nsp3355V355AgTcgCc33AY.290.000047
ORF1ab/nsp3355V355VgtCgtT33AY.460.000312
ORF1ab/nsp3355V355VgtCgtT33AY.480.001395
ORF1ab/nsp3355V355AgTcgCc23B.1.10.000036
ORF1ab/nsp3355V355FGtcTtc23B.1.10.000036
ORF1ab/nsp3355V355FGtCTtT13B.1.10.000018
ORF1ab/nsp3355V355AgTCgCT13B.1.10.000018
ORF1ab/nsp3355V355AgTcgCc33B.1.1.1680.078947
ORF1ab/nsp3355V355VgtCgtT33B.1.1.2070.003546
ORF1ab/nsp3355V355VgtCgtT33B.1.1.2320.005445
ORF1ab/nsp3355V355VgtCgtT33B.1.1.2650.009464
ORF1ab/nsp3355V355VgtCgtT33B.1.1.330.001263
ORF1ab/nsp3355V355VgtCgtT33B.1.1.370.000579
ORF1ab/nsp3355V355VgtCgtT33B.1.1.700.001023
ORF1ab/nsp3355V355AgTcgCc33B.1.1600.000094
ORF1ab/nsp3355V355VgtCgtT33B.1.1690.044776
ORF1ab/nsp3355V355VgtCgtT33B.1.177.160.001993
ORF1ab/nsp3355V355VgtCgtT33B.1.177.330.004934
ORF1ab/nsp3355V355VgtCgtA33B.1.177.820.001432
ORF1ab/nsp3355V355DgTcgAc33B.1.3110.000824
ORF1ab/nsp3355V355DgTcgAc33B.1.3240.004815
ORF1ab/nsp3355V355VgtCgtT33B.1.3260.022727
ORF1ab/nsp3355V355DgTcgAc33B.1.5880.00273
ORF1ab/nsp3355V355DgTcgAc33B.1.5950.000783
ORF1ab/nsp3355V355DgTcgAc33B.1.6090.001438
ORF1ab/nsp3355V355VgtCgtT33B.1.617.10.000387
ORF1ab/nsp3355V355VgtCgtT33B.40.006623
ORF1ab/nsp3355V355VgtCgtT33N.40.012766
ORF1ab/nsp3355V355VgtCgtT33P.1.140.000143
ORF1ab/nsp3355V355VgtCgtT33P.1.150.000697
ORF1ab/nsp3355V355IGtcAtc33P.30.004785
ORF1ab/nsp3355V355TGTCACT120.055556
ORF1ab/nsp3355V355RGTcCGc120.055556
ORF1ab/nsp3355V355PGTcCCc120.055556
ORF1ab/nsp3355V355RGTCCGT120.055556
ORF1ab/nsp3355V355TGTcACc120.055556
ORF1ab/nsp3355V355PGTCCCT120.055556
ORF1ab/nsp3355V355VgtCgtT22AA.80.044444
ORF1ab/nsp3355V355VgtCgtT22AE.80.000978
ORF1ab/nsp3355V355PGTcCCc12All0
ORF1ab/nsp3355V355TGTcACc12All0
ORF1ab/nsp3355V355TGTCACT12All0
ORF1ab/nsp3355V355RGTCCGT12All0
ORF1ab/nsp3355V355RGTcCGc12All0
ORF1ab/nsp3355V355PGTCCCT12All0
ORF1ab/nsp3355V355VgtCgtT22AY.1070.000932
ORF1ab/nsp3355V355VgtCgtT22AY.16.10.00094
ORF1ab/nsp3355V355FGtcTtc22AY.30.00002
ORF1ab/nsp3355V355AgTcgCc22AY.30.00002
ORF1ab/nsp3355V355VgtCgtT22AY.320.001065
ORF1ab/nsp3355V355VgtCgtT22AY.380.000999
ORF1ab/nsp3355V355IGtcAtc22AY.430.000009
ORF1ab/nsp3355V355AgTcgCc22AY.430.000009
ORF1ab/nsp3355V355VgtCgtT22AY.490.00639
ORF1ab/nsp3355V355VgtCgtT22AY.5.40.000553
ORF1ab/nsp3355V355VgtCgtT22AY.540.000191
ORF1ab/nsp3355V355VgtCgtT22AY.580.001815
ORF1ab/nsp3355V355IGtcAtc22AY.620.000871
ORF1ab/nsp3355V355VgtCgtT22AY.910.001461
ORF1ab/nsp3355V355VgtCgtT22B0.000256
ORF1ab/nsp3355V355GgTCgGT12B.1.10.000018
ORF1ab/nsp3355V355CGTcTGc12B.1.10.000018
ORF1ab/nsp3355V355CGTCTGT12B.1.10.000018
ORF1ab/nsp3355V355GgTcgGc12B.1.10.000018
ORF1ab/nsp3355V355VgtCgtT22B.1.1.1980.002937
ORF1ab/nsp3355V355DgTcgAc22B.1.1.2050.007435
ORF1ab/nsp3355V355DgTcgAc22B.1.1.2070.002364
ORF1ab/nsp3355V355VgtCgtT22B.1.1.2140.000111
ORF1ab/nsp3355V355VgtCgtT22B.1.1.2300.018349
ORF1ab/nsp3355V355VgtCgtT22B.1.1.2430.008163
ORF1ab/nsp3355V355VgtCgtT22B.1.1.3030.005525
ORF1ab/nsp3355V355VgtCgtT22B.1.1.3060.000877
ORF1ab/nsp3355V355DgTcgAc22B.1.1.3580.068966
ORF1ab/nsp3355V355VgtCgtT22B.1.1.3640.133333
ORF1ab/nsp3355V355VgtCgtA22B.1.1.390.001019
ORF1ab/nsp3355V355DgTcgAc22B.1.1.5180.012658
ORF1ab/nsp3355V355FGtcTtc22B.1.1.70.000002
ORF1ab/nsp3355V355VgtCgtT22B.1.177.600.000437
ORF1ab/nsp3355V355VgtCgtT22B.1.177.650.001331
ORF1ab/nsp3355V355VgtCgtT22B.1.177.760.004988
ORF1ab/nsp3355V355VgtCgtT22B.1.360.000292
ORF1ab/nsp3355V355VgtCgtT22B.1.36.380.003284
ORF1ab/nsp3355V355VgtCgtT22B.1.36.90.006431
ORF1ab/nsp3355V355DgTcgAc22B.1.3690.00057
ORF1ab/nsp3355V355DgTcgAc22B.1.3770.009132
ORF1ab/nsp3355V355VgtCgtT22B.1.4040.002604
ORF1ab/nsp3355V355VgtCgtT22B.1.4280.002041
ORF1ab/nsp3355V355VgtCgtT22B.1.4440.031746
ORF1ab/nsp3355V355IGtcAtc22B.1.4690.00722
ORF1ab/nsp3355V355DgTcgAc22B.1.5170.000854
ORF1ab/nsp3355V355VgtCgtT22B.1.5880.00182
ORF1ab/nsp3355V355delGTC---22B.1.5960.000174
ORF1ab/nsp3355V355delGTC---22B.1.6210.000177
ORF1ab/nsp3355V355VgtCgtT22B.1.9.50.011364
ORF1ab/nsp3355V355delGTC---22P.1.120.000968
ORF1ab/nsp3355V355VgtCgtT22P.1.170.000324
ORF1ab/nsp3355V355AgTcgCc11A.2.40.003367
ORF1ab/nsp3355V355GgTcgGc11A.2.40.003367
ORF1ab/nsp3355V355VgtCgtT11A.2.50.000499
ORF1ab/nsp3355V355DgTcgAc11A.2.50.000499
ORF1ab/nsp3355V355VgtCgtT11A.2.5.20.001572
ORF1ab/nsp3355V355VgtCgtT11A.270.001656
ORF1ab/nsp3355V355VgtCgtT11AA.10.007246
ORF1ab/nsp3355V355del2gTCg--11All0
ORF1ab/nsp3355V355del1gtCgt-11All0
ORF1ab/nsp3355V355QGTCCAA11All0
ORF1ab/nsp3355V355VgtCgtT11AP.10.001502
ORF1ab/nsp3355V355VgtCgtT11AU.10.001266
ORF1ab/nsp3355V355FGtcTtc11AY.1000.000046
ORF1ab/nsp3355V355VgtCgtT11AY.1010.00049
ORF1ab/nsp3355V355FGtcTtc11AY.1030.000006
ORF1ab/nsp3355V355AgTcgCc11AY.1030.000006
ORF1ab/nsp3355V355VgtCgtT11AY.1050.000643
ORF1ab/nsp3355V355VgtCgtT11AY.1060.000335
ORF1ab/nsp3355V355VgtCgtT11AY.1110.000183
ORF1ab/nsp3355V355VgtCgtT11AY.1140.000231
ORF1ab/nsp3355V355VgtCgtT11AY.1170.000085
ORF1ab/nsp3355V355VgtCgtT11AY.1180.000063
ORF1ab/nsp3355V355VgtCgtT11AY.1210.000135
ORF1ab/nsp3355V355AgTcgCc11AY.160.00038
ORF1ab/nsp3355V355VgtCgtT11AY.190.00114
ORF1ab/nsp3355V355IGtcAtc11AY.20.000356
ORF1ab/nsp3355V355AgTcgCc11AY.200.000039
ORF1ab/nsp3355V355IGtcAtc11AY.230.00007
ORF1ab/nsp3355V355VgtCgtT11AY.23.10.000417
ORF1ab/nsp3355V355FGtcTtc11AY.240.000431
ORF1ab/nsp3355V355FGtcTtc11AY.250.000006
ORF1ab/nsp3355V355IGtcAtc11AY.250.000006
ORF1ab/nsp3355V355AgTcgCc11AY.250.000006
ORF1ab/nsp3355V355GgTcgGc11AY.250.000006
ORF1ab/nsp3355V355VgtCgtT11AY.34.10.00051
ORF1ab/nsp3355V355FGtcTtc11AY.34.10.00051
ORF1ab/nsp3355V355VgtCgtT11AY.350.000233
ORF1ab/nsp3355V355VgtCgtT11AY.360.000148
ORF1ab/nsp3355V355VgtCgtT11AY.39.1.10.000725
ORF1ab/nsp3355V355VgtCgtT11AY.39.20.001541
ORF1ab/nsp3355V355VgtCgtT11AY.4.40.000409
ORF1ab/nsp3355V355delGTC---11AY.4.50.000107
ORF1ab/nsp3355V355delGTC---11AY.430.000004
ORF1ab/nsp3355V355DgTcgAc11AY.430.000004
ORF1ab/nsp3355V355LGtcCtc11AY.430.000004
ORF1ab/nsp3355V355AgTcgCc11AY.440.000006
ORF1ab/nsp3355V355VgtCgtT11AY.46.10.001027
ORF1ab/nsp3355V355VgtCgtT11AY.46.50.000198
ORF1ab/nsp3355V355FGtcTtc11AY.46.60.000072
ORF1ab/nsp3355V355IGtcAtc11AY.50.000021
ORF1ab/nsp3355V355VgtCgtT11AY.520.000814
ORF1ab/nsp3355V355VgtCgtT11AY.530.000288
ORF1ab/nsp3355V355VgtCgtT11AY.570.000656
ORF1ab/nsp3355V355VgtCgtT11AY.590.00053
ORF1ab/nsp3355V355VgtCgtT11AY.630.000387
ORF1ab/nsp3355V355VgtCgtT11AY.700.000209
ORF1ab/nsp3355V355IGtcAtc11AY.710.000475
ORF1ab/nsp3355V355VgtCgtG11AY.710.000475
ORF1ab/nsp3355V355IGtcAtc11AY.730.000665
ORF1ab/nsp3355V355VgtCgtT11AY.75.10.00018
ORF1ab/nsp3355V355IGtcAtc11AY.780.001541
ORF1ab/nsp3355V355VgtCgtT11AY.80.000606
ORF1ab/nsp3355V355IGtcAtc11AY.840.000437
ORF1ab/nsp3355V355VgtCgtT11AY.870.000833
ORF1ab/nsp3355V355FGtcTtc11AY.9.10.000084
ORF1ab/nsp3355V355VgtCgtT11AY.900.000684
ORF1ab/nsp3355V355VgtCgtT11AY.930.000273
ORF1ab/nsp3355V355VgtCgtT11AY.950.000761
ORF1ab/nsp3355V355VgtCgtT11AZ.20.000821
ORF1ab/nsp3355V355IGtcAtc11B0.000128
ORF1ab/nsp3355V355del1gtCgt-11B.10.000009
ORF1ab/nsp3355V355IGtcAtc11B.10.000009
ORF1ab/nsp3355V355delGTC---11B.1.10.000018
ORF1ab/nsp3355V355VgtCgtT11B.1.1.10.000327
ORF1ab/nsp3355V355VgtCgtT11B.1.1.1410.002012
ORF1ab/nsp3355V355VgtCgtT11B.1.1.1760.000439
ORF1ab/nsp3355V355VgtCgtG11B.1.1.1770.019231
ORF1ab/nsp3355V355VgtCgtT11B.1.1.2040.00304
ORF1ab/nsp3355V355AgTcgCc11B.1.1.2140.000055
ORF1ab/nsp3355V355VgtCgtT11B.1.1.2200.001859
ORF1ab/nsp3355V355VgtCgtT11B.1.1.2580.003257
ORF1ab/nsp3355V355FGtcTtc11B.1.1.2770.000759
ORF1ab/nsp3355V355DgTcgAc11B.1.1.3160.000925
ORF1ab/nsp3355V355VgtCgtT11B.1.1.3160.000925
ORF1ab/nsp3355V355DgTcgAc11B.1.1.3220.008772
ORF1ab/nsp3355V355delGTC---11B.1.1.330.000421
ORF1ab/nsp3355V355VgtCgtT11B.1.1.3510.002793
ORF1ab/nsp3355V355VgtCgtT11B.1.1.3720.000689
ORF1ab/nsp3355V355DgTcgAc11B.1.1.3800.009804
ORF1ab/nsp3355V355VgtCgtT11B.1.1.3980.003226
ORF1ab/nsp3355V355VgtCgtA11B.1.1.4090.002833
ORF1ab/nsp3355V355VgtCgtT11B.1.1.4120.007634
ORF1ab/nsp3355V355DgTcgAc11B.1.1.4180.022727
ORF1ab/nsp3355V355DgTcgAc11B.1.1.4340.000349
ORF1ab/nsp3355V355VgtCgtT11B.1.1.470.005348
ORF1ab/nsp3355V355VgtCgtT11B.1.1.510.001718
ORF1ab/nsp3355V355DgTcgAc11B.1.1.5170.006803
ORF1ab/nsp3355V355VgtCgtT11B.1.1.5230.001563
ORF1ab/nsp3355V355FGtcTtc11B.1.1.610.008772
ORF1ab/nsp3355V355del2gTCg--11B.1.1.70.000001
ORF1ab/nsp3355V355VgtCgtT11B.1.1.710.006061
ORF1ab/nsp3355V355delGTC---11B.1.1600.000031
ORF1ab/nsp3355V355VgtCgtT11B.1.160.160.000929
ORF1ab/nsp3355V355VgtCgtT11B.1.1700.00431
ORF1ab/nsp3355V355AgTcgCc11B.1.1770.000013
ORF1ab/nsp3355V355VgtCgtT11B.1.177.100.000878
ORF1ab/nsp3355V355DgTcgAc11B.1.177.210.000076
ORF1ab/nsp3355V355FGtcTtc11B.1.177.210.000076
ORF1ab/nsp3355V355VgtCgtT11B.1.177.40.000211
ORF1ab/nsp3355V355VgtCgtT11B.1.177.70.000165
ORF1ab/nsp3355V355VgtCgtT11B.1.177.750.001041
ORF1ab/nsp3355V355VgtCgtT11B.1.177.810.000189
ORF1ab/nsp3355V355VgtCgtT11B.1.2010.005682
ORF1ab/nsp3355V355DgTcgAc11B.1.2030.0625
ORF1ab/nsp3355V355VgtCgtT11B.1.2060.000816
ORF1ab/nsp3355V355VgtCgtT11B.1.2100.002132
ORF1ab/nsp3355V355delGTC---11B.1.2180.005155
ORF1ab/nsp3355V355VgtCgtT11B.1.2210.000071
ORF1ab/nsp3355V355DgTcgAc11B.1.2390.001221
ORF1ab/nsp3355V355IGtcAtc11B.1.2430.00007
ORF1ab/nsp3355V355VgtCgtT11B.1.2520.006623
ORF1ab/nsp3355V355QGTCCAA11B.1.258.170.000104
ORF1ab/nsp3355V355VgtCgtG11B.1.3200.001245
ORF1ab/nsp3355V355VgtCgtT11B.1.3360.002439
ORF1ab/nsp3355V355VgtCgtT11B.1.351.20.000303
ORF1ab/nsp3355V355delGTC---11B.1.360.000146
ORF1ab/nsp3355V355AgTcgCc11B.1.360.000146
ORF1ab/nsp3355V355VgtCgtT11B.1.36.10.00114
ORF1ab/nsp3355V355IGtcAtc11B.1.36.180.00042
ORF1ab/nsp3355V355DgTcgAc11B.1.36.80.001
ORF1ab/nsp3355V355AgTcgCc11B.1.3830.009009
ORF1ab/nsp3355V355VgtCgtT11B.1.3890.001002
ORF1ab/nsp3355V355DgTcgAc11B.1.3960.000706
ORF1ab/nsp3355V355DgTcgAc11B.1.3990.001934
ORF1ab/nsp3355V355VgtCgtT11B.1.4000.000429
ORF1ab/nsp3355V355DgTcgAc11B.1.4030.003268
ORF1ab/nsp3355V355DgTcgAc11B.1.4090.000781
ORF1ab/nsp3355V355IGtcAtc11B.1.4270.00005
ORF1ab/nsp3355V355delGTC---11B.1.4290.000024
ORF1ab/nsp3355V355IGtcAtc11B.1.438.10.000107
ORF1ab/nsp3355V355VgtCgtT11B.1.4530.003236
ORF1ab/nsp3355V355VgtCgtA11B.1.4560.003268
ORF1ab/nsp3355V355VgtCgtT11B.1.4620.007246
ORF1ab/nsp3355V355VgtCgtT11B.1.4700.001404
ORF1ab/nsp3355V355VgtCgtT11B.1.4970.000315
ORF1ab/nsp3355V355IGtcAtc11B.1.5250.000113
ORF1ab/nsp3355V355delGTC---11B.1.5260.000024
ORF1ab/nsp3355V355VgtCgtT11B.1.5600.00463
ORF1ab/nsp3355V355VgtCgtT11B.1.5610.000397
ORF1ab/nsp3355V355DgTcgAc11B.1.5770.000687
ORF1ab/nsp3355V355delGTC---11B.1.5950.000261
ORF1ab/nsp3355V355LGtcCtc11B.1.5960.000087
ORF1ab/nsp3355V355VgtCgtT11B.1.5970.00463
ORF1ab/nsp3355V355delGTC---11B.1.617.20.000004
ORF1ab/nsp3355V355LGtcCtc11B.1.617.20.000004
ORF1ab/nsp3355V355VgtCgtT11B.1.6200.000946
ORF1ab/nsp3355V355VgtCgtT11B.1.621.10.000506
ORF1ab/nsp3355V355VgtCgtT11B.1.6230.000536
ORF1ab/nsp3355V355IGtcAtc11B.1.6280.000352
ORF1ab/nsp3355V355VgtCgtT11B.1.6310.003367
ORF1ab/nsp3355V355VgtCgtT11B.3.10.001658
ORF1ab/nsp3355V355delGTC---11B.4.40.018868
ORF1ab/nsp3355V355delGTC---11B.570.015152
ORF1ab/nsp3355V355VgtCgtT11B.60.00091
ORF1ab/nsp3355V355VgtCgtA11B.6.60.000889
ORF1ab/nsp3355V355VgtCgtT11C.2.10.006667
ORF1ab/nsp3355V355VgtCgtT11C.40.01
ORF1ab/nsp3355V355GgTcgGc11D.20.000075
ORF1ab/nsp3355V355VgtCgtG11N.20.038462
ORF1ab/nsp3355V355delGTC---11N.60.007092
ORF1ab/nsp3355V355AgTcgCc11P.10.000016
ORF1ab/nsp3355V355delGTC---11P.10.000016
ORF1ab/nsp3355V355DgTcgAc11P.10.000016
ORF1ab/nsp3355V355VgtCgtG11P.1.120.000484
ORF1ab/nsp3355V355VgtCgtT11P.1.20.001156
ORF1ab/nsp3355V355VgtCgtT11P.1.60.001946
ORF1ab/nsp3355V355VgtCgtT11P.1.70.000319
ORF1ab/nsp3355V355VgtCgtT11P.40.003802
ORF1ab/nsp3355V355AgTcgCc11P.40.003802
ORF1ab/nsp3355V355AgTcgCc11Q.30.000145
ORF1ab/nsp3355V355AgTcgCc11Q.80.000165

CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk

CoV-GLUE uses sequence data from GISAID. GISAID data provided via this web application is subject to GISAID's Terms and Conditions.