CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF1ab/nsp3 : CodonNum = 354

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF1ab/nsp3354N354HN1172HnonsynAatCat19219213779-3781
ORF1ab/nsp3354N354SN1172SnonsynaAtaGt16816813779-3781
ORF1ab/nsp3354N354NN1172NsynaaTaaC16016013779-3781
ORF1ab/nsp3354N354TN1172TnonsynaAtaCt1251240.9923779-3781
ORF1ab/nsp3354N354TN1172TnonsynaATaCA12510.0083779-3781
ORF1ab/nsp3354N354DN1172DnonsynAatGat10910913779-3781
ORF1ab/nsp3354N354delN1172deldelAAT---404013779-3781
ORF1ab/nsp3354N354KN1172KnonsynaaTaaG1590.63779-3781
ORF1ab/nsp3354N354KN1172KnonsynaaTaaA1560.43779-3781
ORF1ab/nsp3354N354YN1172YnonsynAatTat8813779-3781
ORF1ab/nsp3354N354IN1172InonsynaAtaTt5513779-3781
ORF1ab/nsp3354N354RN1172RnonsynAAtCGt1113779-3781
ORF1ab/nsp3354N354XN1172XnonsynAaTTaA1113779-3781
ORF1ab/nsp3354N354GN1172GnonsynAAtGGt1113779-3781
ORF1ab/nsp3354N354del1N1172del1delAat-at1113779-3781
ORF1ab/nsp3354N354VN1172VnonsynAAtGTt1113779-3781

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF1ab/nsp3354N354HAatCat192192All0.000037
ORF1ab/nsp3354N354HAatCat182182B.1.1.70.000163
ORF1ab/nsp3354N354SaAtaGt168168All0.000032
ORF1ab/nsp3354N354NaaTaaC160160All0.000031
ORF1ab/nsp3354N354TaAtaCt124125All0.000024
ORF1ab/nsp3354N354TaATaCA1125All0
ORF1ab/nsp3354N354DAatGat109109All0.000021
ORF1ab/nsp3354N354SaAtaGt6161AY.1030.000379
ORF1ab/nsp3354N354TaAtaCt4545AY.430.000199
ORF1ab/nsp3354N354delAAT---4040All0.000008
ORF1ab/nsp3354N354TaAtaCt4040AY.40.000062
ORF1ab/nsp3354N354NaaTaaC3838AY.430.000168
ORF1ab/nsp3354N354DAatGat2525AY.46.40.004113
ORF1ab/nsp3354N354DAatGat2424AY.40.000037
ORF1ab/nsp3354N354NaaTaaC2020B.1.1.2100.114286
ORF1ab/nsp3354N354SaAtaGt1717AY.40.000026
ORF1ab/nsp3354N354SaAtaGt1717B.1.1.4300.708333
ORF1ab/nsp3354N354KaaTaaG915All0.000002
ORF1ab/nsp3354N354KaaTaaA615All0.000001
ORF1ab/nsp3354N354NaaTaaC1515AY.1030.000093
ORF1ab/nsp3354N354DAatGat1212AY.39.10.000475
ORF1ab/nsp3354N354NaaTaaC1212B.1.1.2840.001289
ORF1ab/nsp3354N354SaAtaGt1212B.1.617.20.000045
ORF1ab/nsp3354N354NaaTaaC1111B.1.1.70.00001
ORF1ab/nsp3354N354SaAtaGt1010B.1.1.70.000009
ORF1ab/nsp3354N354SaAtaGt99B.1.1770.000119
ORF1ab/nsp3354N354YAatTat88All0.000002
ORF1ab/nsp3354N354TaAtaCt88AY.250.000048
ORF1ab/nsp3354N354NaaTaaC66AY.1100.000676
ORF1ab/nsp3354N354SaAtaGt66B.1.220.007905
ORF1ab/nsp3354N354TaAtaCt66B.1.5880.00546
ORF1ab/nsp3354N354DAatGat66P.10.000095
ORF1ab/nsp3354N354IaAtaTt55All0.000001
ORF1ab/nsp3354N354SaAtaGt55AY.440.00003
ORF1ab/nsp3354N354delAAT---55B.1.1.70.000004
ORF1ab/nsp3354N354DAatGat55B.1.177.120.000758
ORF1ab/nsp3354N354delAAT---55B.1.20.000044
ORF1ab/nsp3354N354SaAtaGt44AY.850.001709
ORF1ab/nsp3354N354NaaTaaC44B.10.000037
ORF1ab/nsp3354N354delAAT---44B.10.000037
ORF1ab/nsp3354N354TaAtaCt44B.1.1.5180.025316
ORF1ab/nsp3354N354NaaTaaC44B.1.1600.000125
ORF1ab/nsp3354N354DAatGat44B.1.617.20.000015
ORF1ab/nsp3354N354TaAtaCt34B.1.617.20.000011
ORF1ab/nsp3354N354TaATaCA14B.1.617.20.000004
ORF1ab/nsp3354N354NaaTaaC33AY.30.00003
ORF1ab/nsp3354N354DAatGat33AY.390.000074
ORF1ab/nsp3354N354delAAT---33AY.40.000005
ORF1ab/nsp3354N354NaaTaaC33AY.440.000018
ORF1ab/nsp3354N354TaAtaCt33AY.840.001312
ORF1ab/nsp3354N354KaaTaaG33B.10.000027
ORF1ab/nsp3354N354DAatGat33B.10.000027
ORF1ab/nsp3354N354NaaTaaC33B.1.1.2140.000166
ORF1ab/nsp3354N354DAatGat33B.1.1.70.000003
ORF1ab/nsp3354N354IaAtaTt33B.1.1.70.000003
ORF1ab/nsp3354N354KaaTaaG23B.1.1.70.000002
ORF1ab/nsp3354N354KaaTaaA13B.1.1.70.000001
ORF1ab/nsp3354N354HAatCat33B.1.1.700.001023
ORF1ab/nsp3354N354delAAT---220.111111
ORF1ab/nsp3354N354DAatGat22AY.1020.000053
ORF1ab/nsp3354N354DAatGat22AY.1190.000071
ORF1ab/nsp3354N354NaaTaaC22AY.200.000078
ORF1ab/nsp3354N354NaaTaaC22AY.250.000012
ORF1ab/nsp3354N354NaaTaaC22AY.290.000032
ORF1ab/nsp3354N354TaAtaCt22AY.30.00002
ORF1ab/nsp3354N354YAatTat22AY.40.000003
ORF1ab/nsp3354N354NaaTaaC22AY.40.000003
ORF1ab/nsp3354N354DAatGat22AY.4.20.000043
ORF1ab/nsp3354N354SaAtaGt22AY.450.000243
ORF1ab/nsp3354N354DAatGat22AY.450.000243
ORF1ab/nsp3354N354TaAtaCt22AY.980.000158
ORF1ab/nsp3354N354DAatGat22AY.99.20.000184
ORF1ab/nsp3354N354HAatCat22B.1.10.000036
ORF1ab/nsp3354N354KaaTaaG12B.1.10.000018
ORF1ab/nsp3354N354KaaTaaA12B.1.10.000018
ORF1ab/nsp3354N354NaaTaaC22B.1.1.5190.000079
ORF1ab/nsp3354N354SaAtaGt22B.1.1.5190.000079
ORF1ab/nsp3354N354SaAtaGt22B.1.1600.000062
ORF1ab/nsp3354N354DAatGat22B.1.1770.000026
ORF1ab/nsp3354N354NaaTaaC22B.1.20.000018
ORF1ab/nsp3354N354TaAtaCt22B.1.20.000018
ORF1ab/nsp3354N354SaAtaGt22B.1.20.000018
ORF1ab/nsp3354N354NaaTaaC22B.1.2580.000133
ORF1ab/nsp3354N354NaaTaaC22B.1.3690.00057
ORF1ab/nsp3354N354SaAtaGt22B.1.5260.000047
ORF1ab/nsp3354N354delAAT---22B.1.5960.000174
ORF1ab/nsp3354N354NaaTaaC22B.1.617.20.000008
ORF1ab/nsp3354N354SaAtaGt22B.1.6210.000177
ORF1ab/nsp3354N354delAAT---22B.1.6210.000177
ORF1ab/nsp3354N354SaAtaGt22B.310.007463
ORF1ab/nsp3354N354delAAT---22P.1.120.000968
ORF1ab/nsp3354N354KaaTaaA110.055556
ORF1ab/nsp3354N354del1Aat-at11All0
ORF1ab/nsp3354N354RAAtCGt11All0
ORF1ab/nsp3354N354VAAtGTt11All0
ORF1ab/nsp3354N354XAaTTaA11All0
ORF1ab/nsp3354N354GAAtGGt11All0
ORF1ab/nsp3354N354NaaTaaC11AW.10.003049
ORF1ab/nsp3354N354IaAtaTt11AY.1030.000006
ORF1ab/nsp3354N354NaaTaaC11AY.1160.000287
ORF1ab/nsp3354N354SaAtaGt11AY.1170.000085
ORF1ab/nsp3354N354DAatGat11AY.1180.000063
ORF1ab/nsp3354N354SaAtaGt11AY.200.000039
ORF1ab/nsp3354N354HAatCat11AY.260.000028
ORF1ab/nsp3354N354TaAtaCt11AY.260.000028
ORF1ab/nsp3354N354SaAtaGt11AY.290.000016
ORF1ab/nsp3354N354KaaTaaG11AY.390.000025
ORF1ab/nsp3354N354TaAtaCt11AY.390.000025
ORF1ab/nsp3354N354XAaTTaA11AY.40.000002
ORF1ab/nsp3354N354HAatCat11AY.40.000002
ORF1ab/nsp3354N354IaAtaTt11AY.40.000002
ORF1ab/nsp3354N354KaaTaaA11AY.40.000002
ORF1ab/nsp3354N354delAAT---11AY.4.50.000107
ORF1ab/nsp3354N354DAatGat11AY.430.000004
ORF1ab/nsp3354N354YAatTat11AY.430.000004
ORF1ab/nsp3354N354del1Aat-at11AY.430.000004
ORF1ab/nsp3354N354delAAT---11AY.430.000004
ORF1ab/nsp3354N354DAatGat11AY.440.000006
ORF1ab/nsp3354N354HAatCat11AY.450.000122
ORF1ab/nsp3354N354SaAtaGt11AY.470.000031
ORF1ab/nsp3354N354NaaTaaC11AY.50.000021
ORF1ab/nsp3354N354DAatGat11AY.530.000288
ORF1ab/nsp3354N354DAatGat11AY.540.000095
ORF1ab/nsp3354N354TaAtaCt11AY.540.000095
ORF1ab/nsp3354N354SaAtaGt11AY.60.000041
ORF1ab/nsp3354N354SaAtaGt11AY.600.000938
ORF1ab/nsp3354N354NaaTaaC11AY.610.000105
ORF1ab/nsp3354N354DAatGat11AY.7.10.000113
ORF1ab/nsp3354N354NaaTaaC11AY.750.000056
ORF1ab/nsp3354N354SaAtaGt11AY.750.000056
ORF1ab/nsp3354N354KaaTaaA11AY.780.001541
ORF1ab/nsp3354N354RAAtCGt11AY.850.000427
ORF1ab/nsp3354N354GAAtGGt11AY.850.000427
ORF1ab/nsp3354N354SaAtaGt11AY.9.10.000084
ORF1ab/nsp3354N354NaaTaaC11AY.9.10.000084
ORF1ab/nsp3354N354TaAtaCt11AY.98.10.000048
ORF1ab/nsp3354N354TaAtaCt11AY.990.001049
ORF1ab/nsp3354N354KaaTaaG11B0.000128
ORF1ab/nsp3354N354YAatTat11B.10.000009
ORF1ab/nsp3354N354SaAtaGt11B.10.000009
ORF1ab/nsp3354N354delAAT---11B.1.10.000018
ORF1ab/nsp3354N354SaAtaGt11B.1.1.1570.000913
ORF1ab/nsp3354N354HAatCat11B.1.1.2770.000759
ORF1ab/nsp3354N354delAAT---11B.1.1.330.000421
ORF1ab/nsp3354N354YAatTat11B.1.1.3690.000446
ORF1ab/nsp3354N354NaaTaaC11B.1.1.4160.000905
ORF1ab/nsp3354N354NaaTaaC11B.1.1.500.000679
ORF1ab/nsp3354N354DAatGat11B.1.1.5180.006329
ORF1ab/nsp3354N354YAatTat11B.1.1.70.000001
ORF1ab/nsp3354N354TaAtaCt11B.1.1.70.000001
ORF1ab/nsp3354N354DAatGat11B.1.1430.021277
ORF1ab/nsp3354N354delAAT---11B.1.1600.000031
ORF1ab/nsp3354N354NaaTaaC11B.1.177.100.000878
ORF1ab/nsp3354N354DAatGat11B.1.177.60.000977
ORF1ab/nsp3354N354SaAtaGt11B.1.177.80.000752
ORF1ab/nsp3354N354DAatGat11B.1.20.000009
ORF1ab/nsp3354N354delAAT---11B.1.2180.005155
ORF1ab/nsp3354N354KaaTaaG11B.1.2370.004975
ORF1ab/nsp3354N354NaaTaaC11B.1.258.170.000104
ORF1ab/nsp3354N354VAAtGTt11B.1.258.170.000104
ORF1ab/nsp3354N354NaaTaaC11B.1.3510.00003
ORF1ab/nsp3354N354HAatCat11B.1.351.20.000303
ORF1ab/nsp3354N354delAAT---11B.1.360.000146
ORF1ab/nsp3354N354NaaTaaC11B.1.360.000146
ORF1ab/nsp3354N354NaaTaaC11B.1.36.160.001425
ORF1ab/nsp3354N354DAatGat11B.1.36.220.001208
ORF1ab/nsp3354N354NaaTaaC11B.1.36.290.000517
ORF1ab/nsp3354N354NaaTaaC11B.1.36.350.002604
ORF1ab/nsp3354N354KaaTaaA11B.1.4270.00005
ORF1ab/nsp3354N354TaAtaCt11B.1.4270.00005
ORF1ab/nsp3354N354delAAT---11B.1.4290.000024
ORF1ab/nsp3354N354NaaTaaC11B.1.438.10.000107
ORF1ab/nsp3354N354YAatTat11B.1.4530.003236
ORF1ab/nsp3354N354NaaTaaC11B.1.466.20.000391
ORF1ab/nsp3354N354delAAT---11B.1.5260.000024
ORF1ab/nsp3354N354YAatTat11B.1.5650.00081
ORF1ab/nsp3354N354delAAT---11B.1.5950.000261
ORF1ab/nsp3354N354NaaTaaC11B.1.5950.000261
ORF1ab/nsp3354N354TaAtaCt11B.1.5950.000261
ORF1ab/nsp3354N354NaaTaaC11B.1.5960.000087
ORF1ab/nsp3354N354delAAT---11B.1.617.20.000004
ORF1ab/nsp3354N354NaaTaaC11B.1.6210.000089
ORF1ab/nsp3354N354TaAtaCt11B.1.6280.000352
ORF1ab/nsp3354N354delAAT---11B.4.40.018868
ORF1ab/nsp3354N354NaaTaaC11B.400.000364
ORF1ab/nsp3354N354delAAT---11B.570.015152
ORF1ab/nsp3354N354NaaTaaC11C.140.004329
ORF1ab/nsp3354N354SaAtaGt11C.160.00106
ORF1ab/nsp3354N354DAatGat11C.370.000116
ORF1ab/nsp3354N354delAAT---11N.60.007092
ORF1ab/nsp3354N354delAAT---11P.10.000016
ORF1ab/nsp3354N354SaAtaGt11P.10.000016
ORF1ab/nsp3354N354NaaTaaC11P.1.130.000898