CoV-GLUE | Mutations | Mutation
Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):
ORF | CodonNum | Mut | ORF1abMut | MutType | RefCodon | MutCodon | AACount | CodonCount | CodonProp | Genome Position |
ORF1ab/nsp3 | 354 | N354H | N1172H | nonsyn | Aat | Cat | 192 | 192 | 1 | 3779-3781 |
ORF1ab/nsp3 | 354 | N354S | N1172S | nonsyn | aAt | aGt | 168 | 168 | 1 | 3779-3781 |
ORF1ab/nsp3 | 354 | N354N | N1172N | syn | aaT | aaC | 160 | 160 | 1 | 3779-3781 |
ORF1ab/nsp3 | 354 | N354T | N1172T | nonsyn | aAt | aCt | 125 | 124 | 0.992 | 3779-3781 |
ORF1ab/nsp3 | 354 | N354T | N1172T | nonsyn | aAT | aCA | 125 | 1 | 0.008 | 3779-3781 |
ORF1ab/nsp3 | 354 | N354D | N1172D | nonsyn | Aat | Gat | 109 | 109 | 1 | 3779-3781 |
ORF1ab/nsp3 | 354 | N354del | N1172del | del | AAT | --- | 40 | 40 | 1 | 3779-3781 |
ORF1ab/nsp3 | 354 | N354K | N1172K | nonsyn | aaT | aaG | 15 | 9 | 0.6 | 3779-3781 |
ORF1ab/nsp3 | 354 | N354K | N1172K | nonsyn | aaT | aaA | 15 | 6 | 0.4 | 3779-3781 |
ORF1ab/nsp3 | 354 | N354Y | N1172Y | nonsyn | Aat | Tat | 8 | 8 | 1 | 3779-3781 |
ORF1ab/nsp3 | 354 | N354I | N1172I | nonsyn | aAt | aTt | 5 | 5 | 1 | 3779-3781 |
ORF1ab/nsp3 | 354 | N354R | N1172R | nonsyn | AAt | CGt | 1 | 1 | 1 | 3779-3781 |
ORF1ab/nsp3 | 354 | N354X | N1172X | nonsyn | AaT | TaA | 1 | 1 | 1 | 3779-3781 |
ORF1ab/nsp3 | 354 | N354G | N1172G | nonsyn | AAt | GGt | 1 | 1 | 1 | 3779-3781 |
ORF1ab/nsp3 | 354 | N354del1 | N1172del1 | del | Aat | -at | 1 | 1 | 1 | 3779-3781 |
ORF1ab/nsp3 | 354 | N354V | N1172V | nonsyn | AAt | GTt | 1 | 1 | 1 | 3779-3781 |
Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):
ORF | CodonNum | Mut | RefCodon | MutCodon | CodonCount | AACount | Lineage | LineageCodonProp |
ORF1ab/nsp3 | 354 | N354H | Aat | Cat | 192 | 192 | All | 0.000037 |
ORF1ab/nsp3 | 354 | N354H | Aat | Cat | 182 | 182 | B.1.1.7 | 0.000163 |
ORF1ab/nsp3 | 354 | N354S | aAt | aGt | 168 | 168 | All | 0.000032 |
ORF1ab/nsp3 | 354 | N354N | aaT | aaC | 160 | 160 | All | 0.000031 |
ORF1ab/nsp3 | 354 | N354T | aAt | aCt | 124 | 125 | All | 0.000024 |
ORF1ab/nsp3 | 354 | N354T | aAT | aCA | 1 | 125 | All | 0 |
ORF1ab/nsp3 | 354 | N354D | Aat | Gat | 109 | 109 | All | 0.000021 |
ORF1ab/nsp3 | 354 | N354S | aAt | aGt | 61 | 61 | AY.103 | 0.000379 |
ORF1ab/nsp3 | 354 | N354T | aAt | aCt | 45 | 45 | AY.43 | 0.000199 |
ORF1ab/nsp3 | 354 | N354del | AAT | --- | 40 | 40 | All | 0.000008 |
ORF1ab/nsp3 | 354 | N354T | aAt | aCt | 40 | 40 | AY.4 | 0.000062 |
ORF1ab/nsp3 | 354 | N354N | aaT | aaC | 38 | 38 | AY.43 | 0.000168 |
ORF1ab/nsp3 | 354 | N354D | Aat | Gat | 25 | 25 | AY.46.4 | 0.004113 |
ORF1ab/nsp3 | 354 | N354D | Aat | Gat | 24 | 24 | AY.4 | 0.000037 |
ORF1ab/nsp3 | 354 | N354N | aaT | aaC | 20 | 20 | B.1.1.210 | 0.114286 |
ORF1ab/nsp3 | 354 | N354S | aAt | aGt | 17 | 17 | AY.4 | 0.000026 |
ORF1ab/nsp3 | 354 | N354S | aAt | aGt | 17 | 17 | B.1.1.430 | 0.708333 |
ORF1ab/nsp3 | 354 | N354K | aaT | aaG | 9 | 15 | All | 0.000002 |
ORF1ab/nsp3 | 354 | N354K | aaT | aaA | 6 | 15 | All | 0.000001 |
ORF1ab/nsp3 | 354 | N354N | aaT | aaC | 15 | 15 | AY.103 | 0.000093 |
ORF1ab/nsp3 | 354 | N354D | Aat | Gat | 12 | 12 | AY.39.1 | 0.000475 |
ORF1ab/nsp3 | 354 | N354N | aaT | aaC | 12 | 12 | B.1.1.284 | 0.001289 |
ORF1ab/nsp3 | 354 | N354S | aAt | aGt | 12 | 12 | B.1.617.2 | 0.000045 |
ORF1ab/nsp3 | 354 | N354N | aaT | aaC | 11 | 11 | B.1.1.7 | 0.00001 |
ORF1ab/nsp3 | 354 | N354S | aAt | aGt | 10 | 10 | B.1.1.7 | 0.000009 |
ORF1ab/nsp3 | 354 | N354S | aAt | aGt | 9 | 9 | B.1.177 | 0.000119 |
ORF1ab/nsp3 | 354 | N354Y | Aat | Tat | 8 | 8 | All | 0.000002 |
ORF1ab/nsp3 | 354 | N354T | aAt | aCt | 8 | 8 | AY.25 | 0.000048 |
ORF1ab/nsp3 | 354 | N354N | aaT | aaC | 6 | 6 | AY.110 | 0.000676 |
ORF1ab/nsp3 | 354 | N354S | aAt | aGt | 6 | 6 | B.1.22 | 0.007905 |
ORF1ab/nsp3 | 354 | N354T | aAt | aCt | 6 | 6 | B.1.588 | 0.00546 |
ORF1ab/nsp3 | 354 | N354D | Aat | Gat | 6 | 6 | P.1 | 0.000095 |
ORF1ab/nsp3 | 354 | N354I | aAt | aTt | 5 | 5 | All | 0.000001 |
ORF1ab/nsp3 | 354 | N354S | aAt | aGt | 5 | 5 | AY.44 | 0.00003 |
ORF1ab/nsp3 | 354 | N354del | AAT | --- | 5 | 5 | B.1.1.7 | 0.000004 |
ORF1ab/nsp3 | 354 | N354D | Aat | Gat | 5 | 5 | B.1.177.12 | 0.000758 |
ORF1ab/nsp3 | 354 | N354del | AAT | --- | 5 | 5 | B.1.2 | 0.000044 |
ORF1ab/nsp3 | 354 | N354S | aAt | aGt | 4 | 4 | AY.85 | 0.001709 |
ORF1ab/nsp3 | 354 | N354N | aaT | aaC | 4 | 4 | B.1 | 0.000037 |
ORF1ab/nsp3 | 354 | N354del | AAT | --- | 4 | 4 | B.1 | 0.000037 |
ORF1ab/nsp3 | 354 | N354T | aAt | aCt | 4 | 4 | B.1.1.518 | 0.025316 |
ORF1ab/nsp3 | 354 | N354N | aaT | aaC | 4 | 4 | B.1.160 | 0.000125 |
ORF1ab/nsp3 | 354 | N354D | Aat | Gat | 4 | 4 | B.1.617.2 | 0.000015 |
ORF1ab/nsp3 | 354 | N354T | aAt | aCt | 3 | 4 | B.1.617.2 | 0.000011 |
ORF1ab/nsp3 | 354 | N354T | aAT | aCA | 1 | 4 | B.1.617.2 | 0.000004 |
ORF1ab/nsp3 | 354 | N354N | aaT | aaC | 3 | 3 | AY.3 | 0.00003 |
ORF1ab/nsp3 | 354 | N354D | Aat | Gat | 3 | 3 | AY.39 | 0.000074 |
ORF1ab/nsp3 | 354 | N354del | AAT | --- | 3 | 3 | AY.4 | 0.000005 |
ORF1ab/nsp3 | 354 | N354N | aaT | aaC | 3 | 3 | AY.44 | 0.000018 |
ORF1ab/nsp3 | 354 | N354T | aAt | aCt | 3 | 3 | AY.84 | 0.001312 |
ORF1ab/nsp3 | 354 | N354K | aaT | aaG | 3 | 3 | B.1 | 0.000027 |
ORF1ab/nsp3 | 354 | N354D | Aat | Gat | 3 | 3 | B.1 | 0.000027 |
ORF1ab/nsp3 | 354 | N354N | aaT | aaC | 3 | 3 | B.1.1.214 | 0.000166 |
ORF1ab/nsp3 | 354 | N354D | Aat | Gat | 3 | 3 | B.1.1.7 | 0.000003 |
ORF1ab/nsp3 | 354 | N354I | aAt | aTt | 3 | 3 | B.1.1.7 | 0.000003 |
ORF1ab/nsp3 | 354 | N354K | aaT | aaG | 2 | 3 | B.1.1.7 | 0.000002 |
ORF1ab/nsp3 | 354 | N354K | aaT | aaA | 1 | 3 | B.1.1.7 | 0.000001 |
ORF1ab/nsp3 | 354 | N354H | Aat | Cat | 3 | 3 | B.1.1.70 | 0.001023 |
ORF1ab/nsp3 | 354 | N354del | AAT | --- | 2 | 2 | 0.111111 | |
ORF1ab/nsp3 | 354 | N354D | Aat | Gat | 2 | 2 | AY.102 | 0.000053 |
ORF1ab/nsp3 | 354 | N354D | Aat | Gat | 2 | 2 | AY.119 | 0.000071 |
ORF1ab/nsp3 | 354 | N354N | aaT | aaC | 2 | 2 | AY.20 | 0.000078 |
ORF1ab/nsp3 | 354 | N354N | aaT | aaC | 2 | 2 | AY.25 | 0.000012 |
ORF1ab/nsp3 | 354 | N354N | aaT | aaC | 2 | 2 | AY.29 | 0.000032 |
ORF1ab/nsp3 | 354 | N354T | aAt | aCt | 2 | 2 | AY.3 | 0.00002 |
ORF1ab/nsp3 | 354 | N354Y | Aat | Tat | 2 | 2 | AY.4 | 0.000003 |
ORF1ab/nsp3 | 354 | N354N | aaT | aaC | 2 | 2 | AY.4 | 0.000003 |
ORF1ab/nsp3 | 354 | N354D | Aat | Gat | 2 | 2 | AY.4.2 | 0.000043 |
ORF1ab/nsp3 | 354 | N354S | aAt | aGt | 2 | 2 | AY.45 | 0.000243 |
ORF1ab/nsp3 | 354 | N354D | Aat | Gat | 2 | 2 | AY.45 | 0.000243 |
ORF1ab/nsp3 | 354 | N354T | aAt | aCt | 2 | 2 | AY.98 | 0.000158 |
ORF1ab/nsp3 | 354 | N354D | Aat | Gat | 2 | 2 | AY.99.2 | 0.000184 |
ORF1ab/nsp3 | 354 | N354H | Aat | Cat | 2 | 2 | B.1.1 | 0.000036 |
ORF1ab/nsp3 | 354 | N354K | aaT | aaG | 1 | 2 | B.1.1 | 0.000018 |
ORF1ab/nsp3 | 354 | N354K | aaT | aaA | 1 | 2 | B.1.1 | 0.000018 |
ORF1ab/nsp3 | 354 | N354N | aaT | aaC | 2 | 2 | B.1.1.519 | 0.000079 |
ORF1ab/nsp3 | 354 | N354S | aAt | aGt | 2 | 2 | B.1.1.519 | 0.000079 |
ORF1ab/nsp3 | 354 | N354S | aAt | aGt | 2 | 2 | B.1.160 | 0.000062 |
ORF1ab/nsp3 | 354 | N354D | Aat | Gat | 2 | 2 | B.1.177 | 0.000026 |
ORF1ab/nsp3 | 354 | N354N | aaT | aaC | 2 | 2 | B.1.2 | 0.000018 |
ORF1ab/nsp3 | 354 | N354T | aAt | aCt | 2 | 2 | B.1.2 | 0.000018 |
ORF1ab/nsp3 | 354 | N354S | aAt | aGt | 2 | 2 | B.1.2 | 0.000018 |
ORF1ab/nsp3 | 354 | N354N | aaT | aaC | 2 | 2 | B.1.258 | 0.000133 |
ORF1ab/nsp3 | 354 | N354N | aaT | aaC | 2 | 2 | B.1.369 | 0.00057 |
ORF1ab/nsp3 | 354 | N354S | aAt | aGt | 2 | 2 | B.1.526 | 0.000047 |
ORF1ab/nsp3 | 354 | N354del | AAT | --- | 2 | 2 | B.1.596 | 0.000174 |
ORF1ab/nsp3 | 354 | N354N | aaT | aaC | 2 | 2 | B.1.617.2 | 0.000008 |
ORF1ab/nsp3 | 354 | N354S | aAt | aGt | 2 | 2 | B.1.621 | 0.000177 |
ORF1ab/nsp3 | 354 | N354del | AAT | --- | 2 | 2 | B.1.621 | 0.000177 |
ORF1ab/nsp3 | 354 | N354S | aAt | aGt | 2 | 2 | B.31 | 0.007463 |
ORF1ab/nsp3 | 354 | N354del | AAT | --- | 2 | 2 | P.1.12 | 0.000968 |
ORF1ab/nsp3 | 354 | N354K | aaT | aaA | 1 | 1 | 0.055556 | |
ORF1ab/nsp3 | 354 | N354del1 | Aat | -at | 1 | 1 | All | 0 |
ORF1ab/nsp3 | 354 | N354R | AAt | CGt | 1 | 1 | All | 0 |
ORF1ab/nsp3 | 354 | N354V | AAt | GTt | 1 | 1 | All | 0 |
ORF1ab/nsp3 | 354 | N354X | AaT | TaA | 1 | 1 | All | 0 |
ORF1ab/nsp3 | 354 | N354G | AAt | GGt | 1 | 1 | All | 0 |
ORF1ab/nsp3 | 354 | N354N | aaT | aaC | 1 | 1 | AW.1 | 0.003049 |
ORF1ab/nsp3 | 354 | N354I | aAt | aTt | 1 | 1 | AY.103 | 0.000006 |
ORF1ab/nsp3 | 354 | N354N | aaT | aaC | 1 | 1 | AY.116 | 0.000287 |
ORF1ab/nsp3 | 354 | N354S | aAt | aGt | 1 | 1 | AY.117 | 0.000085 |
ORF1ab/nsp3 | 354 | N354D | Aat | Gat | 1 | 1 | AY.118 | 0.000063 |
ORF1ab/nsp3 | 354 | N354S | aAt | aGt | 1 | 1 | AY.20 | 0.000039 |
ORF1ab/nsp3 | 354 | N354H | Aat | Cat | 1 | 1 | AY.26 | 0.000028 |
ORF1ab/nsp3 | 354 | N354T | aAt | aCt | 1 | 1 | AY.26 | 0.000028 |
ORF1ab/nsp3 | 354 | N354S | aAt | aGt | 1 | 1 | AY.29 | 0.000016 |
ORF1ab/nsp3 | 354 | N354K | aaT | aaG | 1 | 1 | AY.39 | 0.000025 |
ORF1ab/nsp3 | 354 | N354T | aAt | aCt | 1 | 1 | AY.39 | 0.000025 |
ORF1ab/nsp3 | 354 | N354X | AaT | TaA | 1 | 1 | AY.4 | 0.000002 |
ORF1ab/nsp3 | 354 | N354H | Aat | Cat | 1 | 1 | AY.4 | 0.000002 |
ORF1ab/nsp3 | 354 | N354I | aAt | aTt | 1 | 1 | AY.4 | 0.000002 |
ORF1ab/nsp3 | 354 | N354K | aaT | aaA | 1 | 1 | AY.4 | 0.000002 |
ORF1ab/nsp3 | 354 | N354del | AAT | --- | 1 | 1 | AY.4.5 | 0.000107 |
ORF1ab/nsp3 | 354 | N354D | Aat | Gat | 1 | 1 | AY.43 | 0.000004 |
ORF1ab/nsp3 | 354 | N354Y | Aat | Tat | 1 | 1 | AY.43 | 0.000004 |
ORF1ab/nsp3 | 354 | N354del1 | Aat | -at | 1 | 1 | AY.43 | 0.000004 |
ORF1ab/nsp3 | 354 | N354del | AAT | --- | 1 | 1 | AY.43 | 0.000004 |
ORF1ab/nsp3 | 354 | N354D | Aat | Gat | 1 | 1 | AY.44 | 0.000006 |
ORF1ab/nsp3 | 354 | N354H | Aat | Cat | 1 | 1 | AY.45 | 0.000122 |
ORF1ab/nsp3 | 354 | N354S | aAt | aGt | 1 | 1 | AY.47 | 0.000031 |
ORF1ab/nsp3 | 354 | N354N | aaT | aaC | 1 | 1 | AY.5 | 0.000021 |
ORF1ab/nsp3 | 354 | N354D | Aat | Gat | 1 | 1 | AY.53 | 0.000288 |
ORF1ab/nsp3 | 354 | N354D | Aat | Gat | 1 | 1 | AY.54 | 0.000095 |
ORF1ab/nsp3 | 354 | N354T | aAt | aCt | 1 | 1 | AY.54 | 0.000095 |
ORF1ab/nsp3 | 354 | N354S | aAt | aGt | 1 | 1 | AY.6 | 0.000041 |
ORF1ab/nsp3 | 354 | N354S | aAt | aGt | 1 | 1 | AY.60 | 0.000938 |
ORF1ab/nsp3 | 354 | N354N | aaT | aaC | 1 | 1 | AY.61 | 0.000105 |
ORF1ab/nsp3 | 354 | N354D | Aat | Gat | 1 | 1 | AY.7.1 | 0.000113 |
ORF1ab/nsp3 | 354 | N354N | aaT | aaC | 1 | 1 | AY.75 | 0.000056 |
ORF1ab/nsp3 | 354 | N354S | aAt | aGt | 1 | 1 | AY.75 | 0.000056 |
ORF1ab/nsp3 | 354 | N354K | aaT | aaA | 1 | 1 | AY.78 | 0.001541 |
ORF1ab/nsp3 | 354 | N354R | AAt | CGt | 1 | 1 | AY.85 | 0.000427 |
ORF1ab/nsp3 | 354 | N354G | AAt | GGt | 1 | 1 | AY.85 | 0.000427 |
ORF1ab/nsp3 | 354 | N354S | aAt | aGt | 1 | 1 | AY.9.1 | 0.000084 |
ORF1ab/nsp3 | 354 | N354N | aaT | aaC | 1 | 1 | AY.9.1 | 0.000084 |
ORF1ab/nsp3 | 354 | N354T | aAt | aCt | 1 | 1 | AY.98.1 | 0.000048 |
ORF1ab/nsp3 | 354 | N354T | aAt | aCt | 1 | 1 | AY.99 | 0.001049 |
ORF1ab/nsp3 | 354 | N354K | aaT | aaG | 1 | 1 | B | 0.000128 |
ORF1ab/nsp3 | 354 | N354Y | Aat | Tat | 1 | 1 | B.1 | 0.000009 |
ORF1ab/nsp3 | 354 | N354S | aAt | aGt | 1 | 1 | B.1 | 0.000009 |
ORF1ab/nsp3 | 354 | N354del | AAT | --- | 1 | 1 | B.1.1 | 0.000018 |
ORF1ab/nsp3 | 354 | N354S | aAt | aGt | 1 | 1 | B.1.1.157 | 0.000913 |
ORF1ab/nsp3 | 354 | N354H | Aat | Cat | 1 | 1 | B.1.1.277 | 0.000759 |
ORF1ab/nsp3 | 354 | N354del | AAT | --- | 1 | 1 | B.1.1.33 | 0.000421 |
ORF1ab/nsp3 | 354 | N354Y | Aat | Tat | 1 | 1 | B.1.1.369 | 0.000446 |
ORF1ab/nsp3 | 354 | N354N | aaT | aaC | 1 | 1 | B.1.1.416 | 0.000905 |
ORF1ab/nsp3 | 354 | N354N | aaT | aaC | 1 | 1 | B.1.1.50 | 0.000679 |
ORF1ab/nsp3 | 354 | N354D | Aat | Gat | 1 | 1 | B.1.1.518 | 0.006329 |
ORF1ab/nsp3 | 354 | N354Y | Aat | Tat | 1 | 1 | B.1.1.7 | 0.000001 |
ORF1ab/nsp3 | 354 | N354T | aAt | aCt | 1 | 1 | B.1.1.7 | 0.000001 |
ORF1ab/nsp3 | 354 | N354D | Aat | Gat | 1 | 1 | B.1.143 | 0.021277 |
ORF1ab/nsp3 | 354 | N354del | AAT | --- | 1 | 1 | B.1.160 | 0.000031 |
ORF1ab/nsp3 | 354 | N354N | aaT | aaC | 1 | 1 | B.1.177.10 | 0.000878 |
ORF1ab/nsp3 | 354 | N354D | Aat | Gat | 1 | 1 | B.1.177.6 | 0.000977 |
ORF1ab/nsp3 | 354 | N354S | aAt | aGt | 1 | 1 | B.1.177.8 | 0.000752 |
ORF1ab/nsp3 | 354 | N354D | Aat | Gat | 1 | 1 | B.1.2 | 0.000009 |
ORF1ab/nsp3 | 354 | N354del | AAT | --- | 1 | 1 | B.1.218 | 0.005155 |
ORF1ab/nsp3 | 354 | N354K | aaT | aaG | 1 | 1 | B.1.237 | 0.004975 |
ORF1ab/nsp3 | 354 | N354N | aaT | aaC | 1 | 1 | B.1.258.17 | 0.000104 |
ORF1ab/nsp3 | 354 | N354V | AAt | GTt | 1 | 1 | B.1.258.17 | 0.000104 |
ORF1ab/nsp3 | 354 | N354N | aaT | aaC | 1 | 1 | B.1.351 | 0.00003 |
ORF1ab/nsp3 | 354 | N354H | Aat | Cat | 1 | 1 | B.1.351.2 | 0.000303 |
ORF1ab/nsp3 | 354 | N354del | AAT | --- | 1 | 1 | B.1.36 | 0.000146 |
ORF1ab/nsp3 | 354 | N354N | aaT | aaC | 1 | 1 | B.1.36 | 0.000146 |
ORF1ab/nsp3 | 354 | N354N | aaT | aaC | 1 | 1 | B.1.36.16 | 0.001425 |
ORF1ab/nsp3 | 354 | N354D | Aat | Gat | 1 | 1 | B.1.36.22 | 0.001208 |
ORF1ab/nsp3 | 354 | N354N | aaT | aaC | 1 | 1 | B.1.36.29 | 0.000517 |
ORF1ab/nsp3 | 354 | N354N | aaT | aaC | 1 | 1 | B.1.36.35 | 0.002604 |
ORF1ab/nsp3 | 354 | N354K | aaT | aaA | 1 | 1 | B.1.427 | 0.00005 |
ORF1ab/nsp3 | 354 | N354T | aAt | aCt | 1 | 1 | B.1.427 | 0.00005 |
ORF1ab/nsp3 | 354 | N354del | AAT | --- | 1 | 1 | B.1.429 | 0.000024 |
ORF1ab/nsp3 | 354 | N354N | aaT | aaC | 1 | 1 | B.1.438.1 | 0.000107 |
ORF1ab/nsp3 | 354 | N354Y | Aat | Tat | 1 | 1 | B.1.453 | 0.003236 |
ORF1ab/nsp3 | 354 | N354N | aaT | aaC | 1 | 1 | B.1.466.2 | 0.000391 |
ORF1ab/nsp3 | 354 | N354del | AAT | --- | 1 | 1 | B.1.526 | 0.000024 |
ORF1ab/nsp3 | 354 | N354Y | Aat | Tat | 1 | 1 | B.1.565 | 0.00081 |
ORF1ab/nsp3 | 354 | N354del | AAT | --- | 1 | 1 | B.1.595 | 0.000261 |
ORF1ab/nsp3 | 354 | N354N | aaT | aaC | 1 | 1 | B.1.595 | 0.000261 |
ORF1ab/nsp3 | 354 | N354T | aAt | aCt | 1 | 1 | B.1.595 | 0.000261 |
ORF1ab/nsp3 | 354 | N354N | aaT | aaC | 1 | 1 | B.1.596 | 0.000087 |
ORF1ab/nsp3 | 354 | N354del | AAT | --- | 1 | 1 | B.1.617.2 | 0.000004 |
ORF1ab/nsp3 | 354 | N354N | aaT | aaC | 1 | 1 | B.1.621 | 0.000089 |
ORF1ab/nsp3 | 354 | N354T | aAt | aCt | 1 | 1 | B.1.628 | 0.000352 |
ORF1ab/nsp3 | 354 | N354del | AAT | --- | 1 | 1 | B.4.4 | 0.018868 |
ORF1ab/nsp3 | 354 | N354N | aaT | aaC | 1 | 1 | B.40 | 0.000364 |
ORF1ab/nsp3 | 354 | N354del | AAT | --- | 1 | 1 | B.57 | 0.015152 |
ORF1ab/nsp3 | 354 | N354N | aaT | aaC | 1 | 1 | C.14 | 0.004329 |
ORF1ab/nsp3 | 354 | N354S | aAt | aGt | 1 | 1 | C.16 | 0.00106 |
ORF1ab/nsp3 | 354 | N354D | Aat | Gat | 1 | 1 | C.37 | 0.000116 |
ORF1ab/nsp3 | 354 | N354del | AAT | --- | 1 | 1 | N.6 | 0.007092 |
ORF1ab/nsp3 | 354 | N354del | AAT | --- | 1 | 1 | P.1 | 0.000016 |
ORF1ab/nsp3 | 354 | N354S | aAt | aGt | 1 | 1 | P.1 | 0.000016 |
ORF1ab/nsp3 | 354 | N354N | aaT | aaC | 1 | 1 | P.1.13 | 0.000898 |
CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk
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