CoV-GLUE | Mutations | Mutation
Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):
ORF | CodonNum | Mut | ORF1abMut | MutType | RefCodon | MutCodon | AACount | CodonCount | CodonProp | Genome Position |
ORF1ab/nsp3 | 350 | T350I | T1168I | nonsyn | aCt | aTt | 11269 | 11262 | 0.999379 | 3767-3769 |
ORF1ab/nsp3 | 350 | T350I | T1168I | nonsyn | aCT | aTA | 11269 | 5 | 0.000443695 | 3767-3769 |
ORF1ab/nsp3 | 350 | T350I | T1168I | nonsyn | aCT | aTC | 11269 | 2 | 0.000177478 | 3767-3769 |
ORF1ab/nsp3 | 350 | T350N | T1168N | nonsyn | aCt | aAt | 1103 | 1101 | 0.998187 | 3767-3769 |
ORF1ab/nsp3 | 350 | T350N | T1168N | nonsyn | aCT | aAC | 1103 | 2 | 0.00181324 | 3767-3769 |
ORF1ab/nsp3 | 350 | T350T | T1168T | syn | acT | acC | 274 | 158 | 0.576642 | 3767-3769 |
ORF1ab/nsp3 | 350 | T350T | T1168T | syn | acT | acA | 274 | 81 | 0.29562 | 3767-3769 |
ORF1ab/nsp3 | 350 | T350T | T1168T | syn | acT | acG | 274 | 35 | 0.127737 | 3767-3769 |
ORF1ab/nsp3 | 350 | T350A | T1168A | nonsyn | Act | Gct | 267 | 262 | 0.981273 | 3767-3769 |
ORF1ab/nsp3 | 350 | T350A | T1168A | nonsyn | AcT | GcA | 267 | 3 | 0.011236 | 3767-3769 |
ORF1ab/nsp3 | 350 | T350A | T1168A | nonsyn | AcT | GcC | 267 | 2 | 0.00749064 | 3767-3769 |
ORF1ab/nsp3 | 350 | T350del | T1168del | del | ACT | --- | 94 | 94 | 1 | 3767-3769 |
ORF1ab/nsp3 | 350 | T350S | T1168S | nonsyn | Act | Tct | 58 | 28 | 0.482759 | 3767-3769 |
ORF1ab/nsp3 | 350 | T350S | T1168S | nonsyn | aCt | aGt | 58 | 16 | 0.275862 | 3767-3769 |
ORF1ab/nsp3 | 350 | T350S | T1168S | nonsyn | AcT | TcC | 58 | 13 | 0.224138 | 3767-3769 |
ORF1ab/nsp3 | 350 | T350S | T1168S | nonsyn | AcT | TcA | 58 | 1 | 0.0172414 | 3767-3769 |
ORF1ab/nsp3 | 350 | T350P | T1168P | nonsyn | Act | Cct | 34 | 20 | 0.588235 | 3767-3769 |
ORF1ab/nsp3 | 350 | T350P | T1168P | nonsyn | AcT | CcC | 34 | 12 | 0.352941 | 3767-3769 |
ORF1ab/nsp3 | 350 | T350P | T1168P | nonsyn | AcT | CcG | 34 | 2 | 0.0588235 | 3767-3769 |
ORF1ab/nsp3 | 350 | T350del1 | T1168del1 | del | acT | ac- | 10 | 6 | 0.6 | 3767-3769 |
ORF1ab/nsp3 | 350 | T350del1 | T1168del1 | del | AcT | -cN | 10 | 2 | 0.2 | 3767-3769 |
ORF1ab/nsp3 | 350 | T350del1 | T1168del1 | del | Act | -ct | 10 | 1 | 0.1 | 3767-3769 |
ORF1ab/nsp3 | 350 | T350del1 | T1168del1 | del | aCT | aT- | 10 | 1 | 0.1 | 3767-3769 |
ORF1ab/nsp3 | 350 | T350V | T1168V | nonsyn | ACT | GTA | 9 | 5 | 0.555556 | 3767-3769 |
ORF1ab/nsp3 | 350 | T350V | T1168V | nonsyn | ACt | GTt | 9 | 3 | 0.333333 | 3767-3769 |
ORF1ab/nsp3 | 350 | T350V | T1168V | nonsyn | ACT | GTG | 9 | 1 | 0.111111 | 3767-3769 |
ORF1ab/nsp3 | 350 | T350Y | T1168Y | nonsyn | ACt | TAt | 5 | 3 | 0.6 | 3767-3769 |
ORF1ab/nsp3 | 350 | T350R | T1168R | nonsyn | ACt | CGt | 5 | 2 | 0.4 | 3767-3769 |
ORF1ab/nsp3 | 350 | T350Y | T1168Y | nonsyn | ACT | TAC | 5 | 2 | 0.4 | 3767-3769 |
ORF1ab/nsp3 | 350 | T350R | T1168R | nonsyn | aCT | aGG | 5 | 2 | 0.4 | 3767-3769 |
ORF1ab/nsp3 | 350 | T350R | T1168R | nonsyn | aCT | aGA | 5 | 1 | 0.2 | 3767-3769 |
ORF1ab/nsp3 | 350 | T350G | T1168G | nonsyn | ACt | GGt | 4 | 3 | 0.75 | 3767-3769 |
ORF1ab/nsp3 | 350 | T350F | T1168F | nonsyn | ACt | TTt | 4 | 2 | 0.5 | 3767-3769 |
ORF1ab/nsp3 | 350 | T350F | T1168F | nonsyn | ACT | TTC | 4 | 2 | 0.5 | 3767-3769 |
ORF1ab/nsp3 | 350 | T350G | T1168G | nonsyn | ACT | GGA | 4 | 1 | 0.25 | 3767-3769 |
ORF1ab/nsp3 | 350 | T350W | T1168W | nonsyn | ACT | TGG | 2 | 2 | 1 | 3767-3769 |
ORF1ab/nsp3 | 350 | T350D | T1168D | nonsyn | ACt | GAt | 2 | 1 | 0.5 | 3767-3769 |
ORF1ab/nsp3 | 350 | T350E | T1168E | nonsyn | ACT | GAA | 2 | 1 | 0.5 | 3767-3769 |
ORF1ab/nsp3 | 350 | T350E | T1168E | nonsyn | ACT | GAG | 2 | 1 | 0.5 | 3767-3769 |
ORF1ab/nsp3 | 350 | T350D | T1168D | nonsyn | ACT | GAC | 2 | 1 | 0.5 | 3767-3769 |
ORF1ab/nsp3 | 350 | T350L | T1168L | nonsyn | ACT | TTA | 1 | 1 | 1 | 3767-3769 |
ORF1ab/nsp3 | 350 | T350X | T1168X | nonsyn | ACT | TAA | 1 | 1 | 1 | 3767-3769 |
ORF1ab/nsp3 | 350 | T350K | T1168K | nonsyn | aCT | aAA | 1 | 1 | 1 | 3767-3769 |
ORF1ab/nsp3 | 350 | T350H | T1168H | nonsyn | ACt | CAt | 1 | 1 | 1 | 3767-3769 |
Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):
ORF | CodonNum | Mut | RefCodon | MutCodon | CodonCount | AACount | Lineage | LineageCodonProp |
ORF1ab/nsp3 | 350 | T350I | aCt | aTt | 11262 | 11269 | All | 0.002154 |
ORF1ab/nsp3 | 350 | T350I | aCT | aTA | 5 | 11269 | All | 0.000001 |
ORF1ab/nsp3 | 350 | T350I | aCT | aTC | 2 | 11269 | All | 0 |
ORF1ab/nsp3 | 350 | T350I | aCt | aTt | 2503 | 2503 | B.1.466.2 | 0.979264 |
ORF1ab/nsp3 | 350 | T350I | aCt | aTt | 1265 | 1265 | AY.4 | 0.001969 |
ORF1ab/nsp3 | 350 | T350I | aCt | aTt | 1255 | 1255 | B.1.1.7 | 0.001124 |
ORF1ab/nsp3 | 350 | T350N | aCt | aAt | 1101 | 1103 | All | 0.000211 |
ORF1ab/nsp3 | 350 | T350N | aCT | aAC | 2 | 1103 | All | 0 |
ORF1ab/nsp3 | 350 | T350I | aCt | aTt | 786 | 786 | AU.1 | 0.994937 |
ORF1ab/nsp3 | 350 | T350I | aCt | aTt | 455 | 455 | AU.3 | 0.959916 |
ORF1ab/nsp3 | 350 | T350I | aCt | aTt | 406 | 406 | AU.2 | 0.983051 |
ORF1ab/nsp3 | 350 | T350I | aCt | aTt | 406 | 406 | B.1.617.2 | 0.001529 |
ORF1ab/nsp3 | 350 | T350N | aCt | aAt | 383 | 383 | AY.4.2 | 0.008307 |
ORF1ab/nsp3 | 350 | T350I | aCt | aTt | 349 | 349 | AY.25 | 0.002099 |
ORF1ab/nsp3 | 350 | T350N | aCt | aAt | 328 | 328 | AW.1 | 1 |
ORF1ab/nsp3 | 350 | T350T | acT | acC | 158 | 274 | All | 0.00003 |
ORF1ab/nsp3 | 350 | T350T | acT | acA | 81 | 274 | All | 0.000015 |
ORF1ab/nsp3 | 350 | T350T | acT | acG | 35 | 274 | All | 0.000007 |
ORF1ab/nsp3 | 350 | T350N | aCt | aAt | 268 | 268 | B.1.1.7 | 0.00024 |
ORF1ab/nsp3 | 350 | T350A | Act | Gct | 262 | 267 | All | 0.00005 |
ORF1ab/nsp3 | 350 | T350A | AcT | GcA | 3 | 267 | All | 0.000001 |
ORF1ab/nsp3 | 350 | T350A | AcT | GcC | 2 | 267 | All | 0 |
ORF1ab/nsp3 | 350 | T350I | aCt | aTt | 224 | 224 | AY.113 | 0.031895 |
ORF1ab/nsp3 | 350 | T350I | aCt | aTt | 197 | 197 | AY.26 | 0.005577 |
ORF1ab/nsp3 | 350 | T350I | aCt | aTt | 193 | 193 | B.1 | 0.001768 |
ORF1ab/nsp3 | 350 | T350I | aCt | aTt | 172 | 172 | B.1.567 | 0.573333 |
ORF1ab/nsp3 | 350 | T350I | aCt | aTt | 170 | 170 | AY.44 | 0.001035 |
ORF1ab/nsp3 | 350 | T350I | aCt | aTt | 165 | 165 | B.1.2 | 0.001453 |
ORF1ab/nsp3 | 350 | T350I | aCt | aTt | 155 | 157 | AY.43 | 0.000687 |
ORF1ab/nsp3 | 350 | T350I | aCT | aTA | 2 | 157 | AY.43 | 0.000009 |
ORF1ab/nsp3 | 350 | T350A | Act | Gct | 130 | 132 | B.1.1.7 | 0.000116 |
ORF1ab/nsp3 | 350 | T350A | AcT | GcC | 1 | 132 | B.1.1.7 | 0.000001 |
ORF1ab/nsp3 | 350 | T350A | AcT | GcA | 1 | 132 | B.1.1.7 | 0.000001 |
ORF1ab/nsp3 | 350 | T350I | aCt | aTt | 123 | 123 | AY.103 | 0.000764 |
ORF1ab/nsp3 | 350 | T350I | aCt | aTt | 116 | 116 | AY.118 | 0.007267 |
ORF1ab/nsp3 | 350 | T350I | aCt | aTt | 102 | 102 | AY.20 | 0.003964 |
ORF1ab/nsp3 | 350 | T350I | aCt | aTt | 96 | 96 | AY.61 | 0.010059 |
ORF1ab/nsp3 | 350 | T350del | ACT | --- | 94 | 94 | All | 0.000018 |
ORF1ab/nsp3 | 350 | T350I | aCt | aTt | 82 | 82 | B.1.525 | 0.009279 |
ORF1ab/nsp3 | 350 | T350I | aCt | aTt | 65 | 65 | B.1.526 | 0.001528 |
ORF1ab/nsp3 | 350 | T350I | aCt | aTt | 63 | 63 | AY.100 | 0.002898 |
ORF1ab/nsp3 | 350 | T350I | aCt | aTt | 62 | 62 | B.1.1.526 | 0.219858 |
ORF1ab/nsp3 | 350 | T350I | aCt | aTt | 60 | 61 | B.1.1 | 0.001088 |
ORF1ab/nsp3 | 350 | T350I | aCT | aTC | 1 | 61 | B.1.1 | 0.000018 |
ORF1ab/nsp3 | 350 | T350S | Act | Tct | 28 | 58 | All | 0.000005 |
ORF1ab/nsp3 | 350 | T350S | aCt | aGt | 16 | 58 | All | 0.000003 |
ORF1ab/nsp3 | 350 | T350S | AcT | TcC | 13 | 58 | All | 0.000002 |
ORF1ab/nsp3 | 350 | T350S | AcT | TcA | 1 | 58 | All | 0 |
ORF1ab/nsp3 | 350 | T350I | aCt | aTt | 55 | 55 | AY.29 | 0.000868 |
ORF1ab/nsp3 | 350 | T350I | aCt | aTt | 55 | 55 | AY.3 | 0.000547 |
ORF1ab/nsp3 | 350 | T350T | acT | acA | 52 | 55 | B.1 | 0.000476 |
ORF1ab/nsp3 | 350 | T350T | acT | acC | 2 | 55 | B.1 | 0.000018 |
ORF1ab/nsp3 | 350 | T350T | acT | acG | 1 | 55 | B.1 | 0.000009 |
ORF1ab/nsp3 | 350 | T350I | aCt | aTt | 54 | 54 | AY.119 | 0.001907 |
ORF1ab/nsp3 | 350 | T350I | aCt | aTt | 48 | 48 | B.1.177.86 | 0.008806 |
ORF1ab/nsp3 | 350 | T350I | aCt | aTt | 46 | 46 | P.1 | 0.000725 |
ORF1ab/nsp3 | 350 | T350I | aCt | aTt | 43 | 43 | AY.114 | 0.009938 |
ORF1ab/nsp3 | 350 | T350I | aCt | aTt | 42 | 42 | B.1.1.519 | 0.001668 |
ORF1ab/nsp3 | 350 | T350A | Act | Gct | 40 | 40 | AY.29.1 | 0.00882 |
ORF1ab/nsp3 | 350 | T350T | acT | acC | 35 | 37 | AY.4 | 0.000054 |
ORF1ab/nsp3 | 350 | T350T | acT | acA | 1 | 37 | AY.4 | 0.000002 |
ORF1ab/nsp3 | 350 | T350T | acT | acG | 1 | 37 | AY.4 | 0.000002 |
ORF1ab/nsp3 | 350 | T350I | aCt | aTt | 35 | 35 | B.1.177 | 0.000461 |
ORF1ab/nsp3 | 350 | T350P | Act | Cct | 20 | 34 | All | 0.000004 |
ORF1ab/nsp3 | 350 | T350P | AcT | CcC | 12 | 34 | All | 0.000002 |
ORF1ab/nsp3 | 350 | T350P | AcT | CcG | 2 | 34 | All | 0 |
ORF1ab/nsp3 | 350 | T350A | Act | Gct | 34 | 34 | AY.4 | 0.000053 |
ORF1ab/nsp3 | 350 | T350T | acT | acC | 34 | 34 | AY.44 | 0.000207 |
ORF1ab/nsp3 | 350 | T350I | aCt | aTt | 34 | 34 | B.1.427 | 0.001717 |
ORF1ab/nsp3 | 350 | T350I | aCt | aTt | 33 | 33 | B.1.429 | 0.000776 |
ORF1ab/nsp3 | 350 | T350S | Act | Tct | 21 | 33 | P.1 | 0.000331 |
ORF1ab/nsp3 | 350 | T350S | AcT | TcC | 11 | 33 | P.1 | 0.000173 |
ORF1ab/nsp3 | 350 | T350S | aCt | aGt | 1 | 33 | P.1 | 0.000016 |
ORF1ab/nsp3 | 350 | T350I | aCt | aTt | 31 | 31 | B.1.621 | 0.002744 |
ORF1ab/nsp3 | 350 | T350P | Act | Cct | 18 | 31 | P.1 | 0.000284 |
ORF1ab/nsp3 | 350 | T350P | AcT | CcC | 11 | 31 | P.1 | 0.000173 |
ORF1ab/nsp3 | 350 | T350P | AcT | CcG | 2 | 31 | P.1 | 0.000032 |
ORF1ab/nsp3 | 350 | T350I | aCt | aTt | 29 | 30 | AY.102 | 0.000769 |
ORF1ab/nsp3 | 350 | T350I | aCT | aTA | 1 | 30 | AY.102 | 0.000027 |
ORF1ab/nsp3 | 350 | T350I | aCt | aTt | 30 | 30 | AY.53 | 0.008626 |
ORF1ab/nsp3 | 350 | T350I | aCt | aTt | 30 | 30 | B.1.1.434 | 0.010457 |
ORF1ab/nsp3 | 350 | T350I | aCt | aTt | 30 | 30 | B.1.160.25 | 0.333333 |
ORF1ab/nsp3 | 350 | T350I | aCt | aTt | 28 | 28 | AY.33 | 0.00187 |
ORF1ab/nsp3 | 350 | T350N | aCt | aAt | 28 | 28 | B.1.617.2 | 0.000105 |
ORF1ab/nsp3 | 350 | T350I | aCt | aTt | 27 | 27 | AY.35 | 0.006292 |
ORF1ab/nsp3 | 350 | T350T | acT | acC | 18 | 24 | B.1.1.7 | 0.000016 |
ORF1ab/nsp3 | 350 | T350T | acT | acA | 4 | 24 | B.1.1.7 | 0.000004 |
ORF1ab/nsp3 | 350 | T350T | acT | acG | 2 | 24 | B.1.1.7 | 0.000002 |
ORF1ab/nsp3 | 350 | T350I | aCt | aTt | 24 | 24 | B.1.351 | 0.000713 |
ORF1ab/nsp3 | 350 | T350I | aCt | aTt | 23 | 23 | AY.39 | 0.000568 |
ORF1ab/nsp3 | 350 | T350I | aCt | aTt | 23 | 23 | AY.47 | 0.000715 |
ORF1ab/nsp3 | 350 | T350I | aCt | aTt | 23 | 23 | B.1.232 | 0.012359 |
ORF1ab/nsp3 | 350 | T350I | aCt | aTt | 22 | 22 | AY.75 | 0.001232 |
ORF1ab/nsp3 | 350 | T350I | aCt | aTt | 22 | 22 | AY.99.2 | 0.002027 |
ORF1ab/nsp3 | 350 | T350I | aCt | aTt | 20 | 20 | B.1.459 | 0.081633 |
ORF1ab/nsp3 | 350 | T350I | aCt | aTt | 20 | 20 | B.1.462 | 0.144928 |
ORF1ab/nsp3 | 350 | T350I | aCt | aTt | 19 | 19 | AY.23 | 0.001325 |
ORF1ab/nsp3 | 350 | T350I | aCt | aTt | 19 | 19 | AY.6 | 0.000781 |
ORF1ab/nsp3 | 350 | T350I | aCt | aTt | 19 | 19 | B.1.1.207 | 0.022459 |
ORF1ab/nsp3 | 350 | T350T | acT | acG | 12 | 18 | AY.43 | 0.000053 |
ORF1ab/nsp3 | 350 | T350T | acT | acC | 4 | 18 | AY.43 | 0.000018 |
ORF1ab/nsp3 | 350 | T350T | acT | acA | 2 | 18 | AY.43 | 0.000009 |
ORF1ab/nsp3 | 350 | T350I | aCt | aTt | 18 | 18 | B.1.1.263 | 0.028037 |
ORF1ab/nsp3 | 350 | T350I | aCt | aTt | 17 | 17 | A.6 | 0.087179 |
ORF1ab/nsp3 | 350 | T350I | aCt | aTt | 17 | 17 | AY.109 | 0.012574 |
ORF1ab/nsp3 | 350 | T350I | aCt | aTt | 17 | 17 | B.1.1.291 | 0.012621 |
ORF1ab/nsp3 | 350 | T350I | aCt | aTt | 17 | 17 | B.1.160 | 0.00053 |
ORF1ab/nsp3 | 350 | T350I | aCt | aTt | 17 | 17 | B.1.565 | 0.013776 |
ORF1ab/nsp3 | 350 | T350del | ACT | --- | 17 | 17 | P.1 | 0.000268 |
ORF1ab/nsp3 | 350 | T350I | aCt | aTt | 16 | 16 | AY.34 | 0.001551 |
ORF1ab/nsp3 | 350 | T350N | aCt | aAt | 16 | 16 | AY.4 | 0.000025 |
ORF1ab/nsp3 | 350 | T350I | aCt | aTt | 15 | 15 | B.1.1.333 | 0.016146 |
ORF1ab/nsp3 | 350 | T350I | aCt | aTt | 14 | 14 | AY.32 | 0.007455 |
ORF1ab/nsp3 | 350 | T350I | aCt | aTt | 14 | 14 | AY.5 | 0.000289 |
ORF1ab/nsp3 | 350 | T350I | aCt | aTt | 14 | 14 | B.1.375 | 0.011475 |
ORF1ab/nsp3 | 350 | T350del | ACT | --- | 14 | 14 | P.1.15 | 0.003253 |
ORF1ab/nsp3 | 350 | T350T | acT | acC | 7 | 13 | AY.25 | 0.000042 |
ORF1ab/nsp3 | 350 | T350T | acT | acG | 6 | 13 | AY.25 | 0.000036 |
ORF1ab/nsp3 | 350 | T350I | aCt | aTt | 13 | 13 | B.1.177.82 | 0.006205 |
ORF1ab/nsp3 | 350 | T350I | aCt | aTt | 13 | 13 | B.1.177.87 | 0.009461 |
ORF1ab/nsp3 | 350 | T350I | aCt | aTt | 13 | 13 | B.1.474 | 0.024715 |
ORF1ab/nsp3 | 350 | T350I | aCt | aTt | 12 | 12 | AY.9 | 0.000811 |
ORF1ab/nsp3 | 350 | T350I | aCt | aTt | 11 | 11 | B.1.1.176 | 0.004833 |
ORF1ab/nsp3 | 350 | T350I | aCt | aTt | 11 | 11 | B.1.524 | 0.015471 |
ORF1ab/nsp3 | 350 | T350del1 | acT | ac- | 6 | 10 | All | 0.000001 |
ORF1ab/nsp3 | 350 | T350del1 | AcT | -cN | 2 | 10 | All | 0 |
ORF1ab/nsp3 | 350 | T350del1 | aCT | aT- | 1 | 10 | All | 0 |
ORF1ab/nsp3 | 350 | T350del1 | Act | -ct | 1 | 10 | All | 0 |
ORF1ab/nsp3 | 350 | T350I | aCt | aTt | 10 | 10 | AY.4.2 | 0.000217 |
ORF1ab/nsp3 | 350 | T350N | aCt | aAt | 10 | 10 | B.1.1.464 | 0.014728 |
ORF1ab/nsp3 | 350 | T350I | aCt | aTt | 10 | 10 | B.1.243 | 0.000696 |
ORF1ab/nsp3 | 350 | T350del | ACT | --- | 10 | 10 | P.1.12 | 0.00484 |
ORF1ab/nsp3 | 350 | T350V | ACT | GTA | 5 | 9 | All | 0.000001 |
ORF1ab/nsp3 | 350 | T350V | ACt | GTt | 3 | 9 | All | 0.000001 |
ORF1ab/nsp3 | 350 | T350V | ACT | GTG | 1 | 9 | All | 0 |
ORF1ab/nsp3 | 350 | T350S | aCt | aGt | 9 | 9 | AY.46.5 | 0.001786 |
ORF1ab/nsp3 | 350 | T350I | aCt | aTt | 9 | 9 | B.1.1.192 | 0.020785 |
ORF1ab/nsp3 | 350 | T350I | aCt | aTt | 9 | 9 | B.1.1.284 | 0.000967 |
ORF1ab/nsp3 | 350 | T350I | aCt | aTt | 9 | 9 | B.1.177.3 | 0.068702 |
ORF1ab/nsp3 | 350 | T350I | aCt | aTt | 9 | 9 | B.1.177.58 | 0.011984 |
ORF1ab/nsp3 | 350 | T350A | Act | Gct | 9 | 9 | B.1.617.2 | 0.000034 |
ORF1ab/nsp3 | 350 | T350I | aCt | aTt | 9 | 9 | D.2 | 0.000675 |
ORF1ab/nsp3 | 350 | T350I | aCt | aTt | 8 | 8 | AY.13 | 0.001288 |
ORF1ab/nsp3 | 350 | T350I | aCt | aTt | 8 | 8 | AY.16.1 | 0.003759 |
ORF1ab/nsp3 | 350 | T350N | aCt | aAt | 8 | 8 | AY.35 | 0.001864 |
ORF1ab/nsp3 | 350 | T350I | aCt | aTt | 8 | 8 | AY.42 | 0.000322 |
ORF1ab/nsp3 | 350 | T350I | aCt | aTt | 8 | 8 | AY.9.2 | 0.000294 |
ORF1ab/nsp3 | 350 | T350I | aCt | aTt | 8 | 8 | AY.98.1 | 0.000387 |
ORF1ab/nsp3 | 350 | T350I | aCt | aTt | 8 | 8 | B.1.1.317 | 0.003294 |
ORF1ab/nsp3 | 350 | T350I | aCt | aTt | 8 | 8 | B.1.1.348 | 0.006369 |
ORF1ab/nsp3 | 350 | T350I | aCt | aTt | 8 | 8 | B.1.221 | 0.000568 |
ORF1ab/nsp3 | 350 | T350I | aCt | aTt | 8 | 8 | B.1.36.8 | 0.008 |
ORF1ab/nsp3 | 350 | T350T | acT | acC | 7 | 8 | B.1.617.2 | 0.000026 |
ORF1ab/nsp3 | 350 | T350T | acT | acA | 1 | 8 | B.1.617.2 | 0.000004 |
ORF1ab/nsp3 | 350 | T350I | aCt | aTt | 8 | 8 | P.1.14 | 0.000382 |
ORF1ab/nsp3 | 350 | T350I | aCt | aTt | 7 | 7 | A | 0.002709 |
ORF1ab/nsp3 | 350 | T350I | aCt | aTt | 7 | 7 | AY.117 | 0.000592 |
ORF1ab/nsp3 | 350 | T350I | aCt | aTt | 7 | 7 | AY.45 | 0.000852 |
ORF1ab/nsp3 | 350 | T350I | aCt | aTt | 7 | 7 | AY.54 | 0.000667 |
ORF1ab/nsp3 | 350 | T350I | aCt | aTt | 7 | 7 | AY.75.1 | 0.001262 |
ORF1ab/nsp3 | 350 | T350I | aCt | aTt | 7 | 7 | AY.92 | 0.002011 |
ORF1ab/nsp3 | 350 | T350I | aCt | aTt | 7 | 7 | AY.94 | 0.003099 |
ORF1ab/nsp3 | 350 | T350N | aCt | aAt | 7 | 7 | B.1 | 0.000064 |
ORF1ab/nsp3 | 350 | T350I | aCt | aTt | 7 | 7 | B.1.1.214 | 0.000388 |
ORF1ab/nsp3 | 350 | T350I | aCt | aTt | 7 | 7 | B.1.1.265 | 0.022082 |
ORF1ab/nsp3 | 350 | T350I | aCt | aTt | 7 | 7 | B.1.106 | 0.21875 |
ORF1ab/nsp3 | 350 | T350I | aCt | aTt | 7 | 7 | B.1.236 | 0.014374 |
ORF1ab/nsp3 | 350 | T350I | aCt | aTt | 7 | 7 | B.1.258 | 0.000466 |
ORF1ab/nsp3 | 350 | T350I | aCt | aTt | 7 | 7 | B.1.36 | 0.001021 |
ORF1ab/nsp3 | 350 | T350I | aCt | aTt | 7 | 7 | C.37 | 0.000812 |
ORF1ab/nsp3 | 350 | T350T | acT | acC | 5 | 7 | P.1 | 0.000079 |
ORF1ab/nsp3 | 350 | T350T | acT | acG | 2 | 7 | P.1 | 0.000032 |
ORF1ab/nsp3 | 350 | T350I | aCt | aTt | 7 | 7 | P.1.7 | 0.002235 |
ORF1ab/nsp3 | 350 | T350I | aCt | aTt | 3 | 6 | 0.166667 | |
ORF1ab/nsp3 | 350 | T350I | aCT | aTA | 2 | 6 | 0.111111 | |
ORF1ab/nsp3 | 350 | T350I | aCT | aTC | 1 | 6 | 0.055556 | |
ORF1ab/nsp3 | 350 | T350N | aCt | aAt | 6 | 6 | AY.103 | 0.000037 |
ORF1ab/nsp3 | 350 | T350I | aCt | aTt | 6 | 6 | AY.111 | 0.001099 |
ORF1ab/nsp3 | 350 | T350I | aCt | aTt | 6 | 6 | AY.120 | 0.000223 |
ORF1ab/nsp3 | 350 | T350I | aCt | aTt | 6 | 6 | AY.46.6 | 0.000433 |
ORF1ab/nsp3 | 350 | T350A | Act | Gct | 6 | 6 | AY.63 | 0.002321 |
ORF1ab/nsp3 | 350 | T350I | aCt | aTt | 6 | 6 | AY.70 | 0.001251 |
ORF1ab/nsp3 | 350 | T350del | ACT | --- | 6 | 6 | B.1 | 0.000055 |
ORF1ab/nsp3 | 350 | T350T | acT | acC | 3 | 6 | B.1.1 | 0.000054 |
ORF1ab/nsp3 | 350 | T350T | acT | acA | 3 | 6 | B.1.1 | 0.000054 |
ORF1ab/nsp3 | 350 | T350I | aCt | aTt | 6 | 6 | B.1.498 | 0.122449 |
ORF1ab/nsp3 | 350 | T350I | aCt | aTt | 6 | 6 | B.1.517 | 0.002562 |
ORF1ab/nsp3 | 350 | T350I | aCt | aTt | 6 | 6 | B.1.596 | 0.000523 |
ORF1ab/nsp3 | 350 | T350S | aCt | aGt | 2 | 5 | 0.111111 | |
ORF1ab/nsp3 | 350 | T350R | ACt | CGt | 2 | 5 | 0.111111 | |
ORF1ab/nsp3 | 350 | T350R | aCT | aGG | 2 | 5 | 0.111111 | |
ORF1ab/nsp3 | 350 | T350R | aCT | aGA | 1 | 5 | 0.055556 | |
ORF1ab/nsp3 | 350 | T350S | AcT | TcA | 1 | 5 | 0.055556 | |
ORF1ab/nsp3 | 350 | T350S | AcT | TcC | 1 | 5 | 0.055556 | |
ORF1ab/nsp3 | 350 | T350S | Act | Tct | 1 | 5 | 0.055556 | |
ORF1ab/nsp3 | 350 | T350Y | ACt | TAt | 3 | 5 | All | 0.000001 |
ORF1ab/nsp3 | 350 | T350R | aCT | aGG | 2 | 5 | All | 0 |
ORF1ab/nsp3 | 350 | T350Y | ACT | TAC | 2 | 5 | All | 0 |
ORF1ab/nsp3 | 350 | T350R | ACt | CGt | 2 | 5 | All | 0 |
ORF1ab/nsp3 | 350 | T350R | aCT | aGA | 1 | 5 | All | 0 |
ORF1ab/nsp3 | 350 | T350T | acT | acC | 5 | 5 | AY.103 | 0.000031 |
ORF1ab/nsp3 | 350 | T350I | aCt | aTt | 5 | 5 | AY.39.1 | 0.000198 |
ORF1ab/nsp3 | 350 | T350N | aCt | aAt | 5 | 5 | AY.43 | 0.000022 |
ORF1ab/nsp3 | 350 | T350A | Act | Gct | 4 | 5 | AY.44 | 0.000024 |
ORF1ab/nsp3 | 350 | T350A | AcT | GcC | 1 | 5 | AY.44 | 0.000006 |
ORF1ab/nsp3 | 350 | T350N | aCt | aAt | 5 | 5 | AY.93 | 0.001365 |
ORF1ab/nsp3 | 350 | T350I | aCt | aTt | 5 | 5 | B | 0.000639 |
ORF1ab/nsp3 | 350 | T350N | aCt | aAt | 4 | 5 | B.1.1 | 0.000073 |
ORF1ab/nsp3 | 350 | T350N | aCT | aAC | 1 | 5 | B.1.1 | 0.000018 |
ORF1ab/nsp3 | 350 | T350N | aCt | aAt | 5 | 5 | B.1.1.348 | 0.003981 |
ORF1ab/nsp3 | 350 | T350del | ACT | --- | 5 | 5 | B.1.1.7 | 0.000004 |
ORF1ab/nsp3 | 350 | T350I | aCt | aTt | 5 | 5 | B.1.234 | 0.00066 |
ORF1ab/nsp3 | 350 | T350I | aCt | aTt | 5 | 5 | B.1.324 | 0.008026 |
ORF1ab/nsp3 | 350 | T350I | aCt | aTt | 5 | 5 | B.1.36.29 | 0.002587 |
ORF1ab/nsp3 | 350 | T350I | aCt | aTt | 5 | 5 | B.1.469 | 0.018051 |
ORF1ab/nsp3 | 350 | T350I | aCt | aTt | 5 | 5 | B.1.609 | 0.002397 |
ORF1ab/nsp3 | 350 | T350I | aCt | aTt | 5 | 5 | P.1.2 | 0.00578 |
ORF1ab/nsp3 | 350 | T350I | aCt | aTt | 5 | 5 | Q.1 | 0.000632 |
ORF1ab/nsp3 | 350 | T350I | aCt | aTt | 5 | 5 | Q.8 | 0.000825 |
ORF1ab/nsp3 | 350 | T350G | ACt | GGt | 3 | 4 | 0.166667 | |
ORF1ab/nsp3 | 350 | T350G | ACT | GGA | 1 | 4 | 0.055556 | |
ORF1ab/nsp3 | 350 | T350G | ACt | GGt | 3 | 4 | All | 0.000001 |
ORF1ab/nsp3 | 350 | T350F | ACT | TTC | 2 | 4 | All | 0 |
ORF1ab/nsp3 | 350 | T350F | ACt | TTt | 2 | 4 | All | 0 |
ORF1ab/nsp3 | 350 | T350G | ACT | GGA | 1 | 4 | All | 0 |
ORF1ab/nsp3 | 350 | T350A | Act | Gct | 3 | 4 | AY.102 | 0.00008 |
ORF1ab/nsp3 | 350 | T350A | AcT | GcA | 1 | 4 | AY.102 | 0.000027 |
ORF1ab/nsp3 | 350 | T350I | aCt | aTt | 4 | 4 | AY.106 | 0.00134 |
ORF1ab/nsp3 | 350 | T350I | aCt | aTt | 4 | 4 | AY.16 | 0.001519 |
ORF1ab/nsp3 | 350 | T350I | aCt | aTt | 4 | 4 | AY.27 | 0.000259 |
ORF1ab/nsp3 | 350 | T350I | aCt | aTt | 4 | 4 | AY.38 | 0.001997 |
ORF1ab/nsp3 | 350 | T350I | aCt | aTt | 4 | 4 | AY.71 | 0.0019 |
ORF1ab/nsp3 | 350 | T350I | aCt | aTt | 4 | 4 | AY.73 | 0.002661 |
ORF1ab/nsp3 | 350 | T350I | aCt | aTt | 4 | 4 | AY.98 | 0.000316 |
ORF1ab/nsp3 | 350 | T350I | aCt | aTt | 4 | 4 | B.1.1.306 | 0.001754 |
ORF1ab/nsp3 | 350 | T350I | aCt | aTt | 4 | 4 | B.1.1.318 | 0.001207 |
ORF1ab/nsp3 | 350 | T350I | aCt | aTt | 4 | 4 | B.1.1.63 | 0.001543 |
ORF1ab/nsp3 | 350 | T350I | aCt | aTt | 4 | 4 | B.1.367 | 0.00317 |
ORF1ab/nsp3 | 350 | T350T | acT | acC | 4 | 4 | B.1.623 | 0.002146 |
ORF1ab/nsp3 | 350 | T350I | aCt | aTt | 4 | 4 | C.1 | 0.009569 |
ORF1ab/nsp3 | 350 | T350T | acT | acA | 2 | 3 | 0.111111 | |
ORF1ab/nsp3 | 350 | T350T | acT | acC | 1 | 3 | 0.055556 | |
ORF1ab/nsp3 | 350 | T350del | ACT | --- | 3 | 3 | AY.4 | 0.000005 |
ORF1ab/nsp3 | 350 | T350A | Act | Gct | 3 | 3 | AY.43 | 0.000013 |
ORF1ab/nsp3 | 350 | T350N | aCt | aAt | 3 | 3 | AY.44 | 0.000018 |
ORF1ab/nsp3 | 350 | T350I | aCt | aTt | 3 | 3 | AY.5.4 | 0.00083 |
ORF1ab/nsp3 | 350 | T350I | aCt | aTt | 3 | 3 | AY.59 | 0.001589 |
ORF1ab/nsp3 | 350 | T350I | aCt | aTt | 3 | 3 | AY.9.1 | 0.000251 |
ORF1ab/nsp3 | 350 | T350I | aCt | aTt | 3 | 3 | B.1.1.1 | 0.00098 |
ORF1ab/nsp3 | 350 | T350I | aCt | aTt | 3 | 3 | B.1.1.216 | 0.002671 |
ORF1ab/nsp3 | 350 | T350I | aCt | aTt | 3 | 3 | B.1.1.222 | 0.000612 |
ORF1ab/nsp3 | 350 | T350I | aCt | aTt | 3 | 3 | B.1.128 | 0.001906 |
ORF1ab/nsp3 | 350 | T350I | aCt | aTt | 3 | 3 | B.1.160.29 | 0.012658 |
ORF1ab/nsp3 | 350 | T350I | aCt | aTt | 3 | 3 | B.1.177.23 | 0.009709 |
ORF1ab/nsp3 | 350 | T350N | aCt | aAt | 3 | 3 | B.1.2 | 0.000026 |
ORF1ab/nsp3 | 350 | T350I | aCt | aTt | 3 | 3 | B.1.222 | 0.005076 |
ORF1ab/nsp3 | 350 | T350I | aCt | aTt | 3 | 3 | B.1.241 | 0.002435 |
ORF1ab/nsp3 | 350 | T350I | aCt | aTt | 3 | 3 | B.1.258.17 | 0.000312 |
ORF1ab/nsp3 | 350 | T350I | aCt | aTt | 3 | 3 | B.1.258.3 | 0.005025 |
ORF1ab/nsp3 | 350 | T350I | aCt | aTt | 3 | 3 | B.1.260 | 0.010033 |
ORF1ab/nsp3 | 350 | T350I | aCt | aTt | 3 | 3 | B.1.336 | 0.007317 |
ORF1ab/nsp3 | 350 | T350I | aCt | aTt | 3 | 3 | B.1.36.18 | 0.001261 |
ORF1ab/nsp3 | 350 | T350I | aCt | aTt | 3 | 3 | B.1.415.1 | 0.022727 |
ORF1ab/nsp3 | 350 | T350I | aCt | aTt | 3 | 3 | B.1.426 | 0.003027 |
ORF1ab/nsp3 | 350 | T350I | aCt | aTt | 3 | 3 | B.1.438.1 | 0.000322 |
ORF1ab/nsp3 | 350 | T350A | Act | Gct | 3 | 3 | B.1.526 | 0.000071 |
ORF1ab/nsp3 | 350 | T350I | aCt | aTt | 3 | 3 | B.1.575 | 0.00091 |
ORF1ab/nsp3 | 350 | T350del | ACT | --- | 3 | 3 | B.1.617.2 | 0.000011 |
ORF1ab/nsp3 | 350 | T350del | ACT | --- | 3 | 3 | B.1.621 | 0.000266 |
ORF1ab/nsp3 | 350 | T350del | ACT | --- | 3 | 3 | P.1.14 | 0.000143 |
ORF1ab/nsp3 | 350 | T350I | aCt | aTt | 3 | 3 | Q.3 | 0.000435 |
ORF1ab/nsp3 | 350 | T350W | ACT | TGG | 2 | 2 | 0.111111 | |
ORF1ab/nsp3 | 350 | T350del | ACT | --- | 2 | 2 | 0.111111 | |
ORF1ab/nsp3 | 350 | T350V | ACT | GTA | 1 | 2 | 0.055556 | |
ORF1ab/nsp3 | 350 | T350N | aCt | aAt | 1 | 2 | 0.055556 | |
ORF1ab/nsp3 | 350 | T350A | Act | Gct | 1 | 2 | 0.055556 | |
ORF1ab/nsp3 | 350 | T350V | ACt | GTt | 1 | 2 | 0.055556 | |
ORF1ab/nsp3 | 350 | T350F | ACT | TTC | 1 | 2 | 0.055556 | |
ORF1ab/nsp3 | 350 | T350N | aCT | aAC | 1 | 2 | 0.055556 | |
ORF1ab/nsp3 | 350 | T350F | ACt | TTt | 1 | 2 | 0.055556 | |
ORF1ab/nsp3 | 350 | T350Y | ACT | TAC | 1 | 2 | 0.055556 | |
ORF1ab/nsp3 | 350 | T350Y | ACt | TAt | 1 | 2 | 0.055556 | |
ORF1ab/nsp3 | 350 | T350A | AcT | GcA | 1 | 2 | 0.055556 | |
ORF1ab/nsp3 | 350 | T350T | acT | acC | 2 | 2 | A | 0.000774 |
ORF1ab/nsp3 | 350 | T350I | aCt | aTt | 2 | 2 | A.2 | 0.001324 |
ORF1ab/nsp3 | 350 | T350W | ACT | TGG | 2 | 2 | All | 0 |
ORF1ab/nsp3 | 350 | T350E | ACT | GAA | 1 | 2 | All | 0 |
ORF1ab/nsp3 | 350 | T350E | ACT | GAG | 1 | 2 | All | 0 |
ORF1ab/nsp3 | 350 | T350D | ACt | GAt | 1 | 2 | All | 0 |
ORF1ab/nsp3 | 350 | T350D | ACT | GAC | 1 | 2 | All | 0 |
ORF1ab/nsp3 | 350 | T350V | ACt | GTt | 1 | 2 | AY.102 | 0.000027 |
ORF1ab/nsp3 | 350 | T350T | acT | acC | 1 | 2 | AY.102 | 0.000027 |
ORF1ab/nsp3 | 350 | T350T | acT | acA | 1 | 2 | AY.102 | 0.000027 |
ORF1ab/nsp3 | 350 | T350V | ACT | GTA | 1 | 2 | AY.102 | 0.000027 |
ORF1ab/nsp3 | 350 | T350I | aCt | aTt | 2 | 2 | AY.104 | 0.003968 |
ORF1ab/nsp3 | 350 | T350I | aCt | aTt | 2 | 2 | AY.116 | 0.000574 |
ORF1ab/nsp3 | 350 | T350T | acT | acC | 2 | 2 | AY.16.1 | 0.00094 |
ORF1ab/nsp3 | 350 | T350I | aCt | aTt | 2 | 2 | AY.24 | 0.000862 |
ORF1ab/nsp3 | 350 | T350N | aCt | aAt | 2 | 2 | AY.25 | 0.000012 |
ORF1ab/nsp3 | 350 | T350T | acT | acC | 1 | 2 | AY.3 | 0.00001 |
ORF1ab/nsp3 | 350 | T350T | acT | acG | 1 | 2 | AY.3 | 0.00001 |
ORF1ab/nsp3 | 350 | T350I | aCt | aTt | 2 | 2 | AY.3.1 | 0.000171 |
ORF1ab/nsp3 | 350 | T350I | aCt | aTt | 2 | 2 | AY.30 | 0.000791 |
ORF1ab/nsp3 | 350 | T350I | aCt | aTt | 2 | 2 | AY.34.1 | 0.00102 |
ORF1ab/nsp3 | 350 | T350A | Act | Gct | 2 | 2 | AY.4.2 | 0.000043 |
ORF1ab/nsp3 | 350 | T350I | aCt | aTt | 2 | 2 | AY.4.5 | 0.000215 |
ORF1ab/nsp3 | 350 | T350del | ACT | --- | 2 | 2 | AY.43 | 0.000009 |
ORF1ab/nsp3 | 350 | T350V | ACT | GTA | 2 | 2 | AY.43 | 0.000009 |
ORF1ab/nsp3 | 350 | T350V | ACT | GTG | 1 | 2 | AY.46.6 | 0.000072 |
ORF1ab/nsp3 | 350 | T350V | ACT | GTA | 1 | 2 | AY.46.6 | 0.000072 |
ORF1ab/nsp3 | 350 | T350T | acT | acC | 2 | 2 | AY.47 | 0.000062 |
ORF1ab/nsp3 | 350 | T350T | acT | acC | 2 | 2 | AY.5 | 0.000041 |
ORF1ab/nsp3 | 350 | T350I | aCt | aTt | 2 | 2 | AY.55 | 0.001835 |
ORF1ab/nsp3 | 350 | T350T | acT | acC | 2 | 2 | AY.65 | 0.001066 |
ORF1ab/nsp3 | 350 | T350T | acT | acC | 2 | 2 | AY.75.1 | 0.000361 |
ORF1ab/nsp3 | 350 | T350I | aCt | aTt | 2 | 2 | AY.77 | 0.002255 |
ORF1ab/nsp3 | 350 | T350A | Act | Gct | 2 | 2 | AY.77 | 0.002255 |
ORF1ab/nsp3 | 350 | T350I | aCt | aTt | 2 | 2 | AY.84 | 0.000875 |
ORF1ab/nsp3 | 350 | T350T | acT | acC | 2 | 2 | AY.98 | 0.000158 |
ORF1ab/nsp3 | 350 | T350T | acT | acG | 2 | 2 | AY.99.2 | 0.000184 |
ORF1ab/nsp3 | 350 | T350del1 | aCT | aT- | 1 | 2 | B.1 | 0.000009 |
ORF1ab/nsp3 | 350 | T350del1 | AcT | -cN | 1 | 2 | B.1 | 0.000009 |
ORF1ab/nsp3 | 350 | T350E | ACT | GAG | 1 | 2 | B.1.1 | 0.000018 |
ORF1ab/nsp3 | 350 | T350Y | ACT | TAC | 1 | 2 | B.1.1 | 0.000018 |
ORF1ab/nsp3 | 350 | T350Y | ACt | TAt | 1 | 2 | B.1.1 | 0.000018 |
ORF1ab/nsp3 | 350 | T350S | Act | Tct | 1 | 2 | B.1.1 | 0.000018 |
ORF1ab/nsp3 | 350 | T350E | ACT | GAA | 1 | 2 | B.1.1 | 0.000018 |
ORF1ab/nsp3 | 350 | T350S | AcT | TcC | 1 | 2 | B.1.1 | 0.000018 |
ORF1ab/nsp3 | 350 | T350I | aCt | aTt | 2 | 2 | B.1.1.168 | 0.052632 |
ORF1ab/nsp3 | 350 | T350I | aCt | aTt | 2 | 2 | B.1.1.170 | 0.002494 |
ORF1ab/nsp3 | 350 | T350N | aCt | aAt | 2 | 2 | B.1.1.214 | 0.000111 |
ORF1ab/nsp3 | 350 | T350I | aCt | aTt | 2 | 2 | B.1.1.28 | 0.000622 |
ORF1ab/nsp3 | 350 | T350I | aCt | aTt | 2 | 2 | B.1.1.326 | 0.003521 |
ORF1ab/nsp3 | 350 | T350I | aCt | aTt | 2 | 2 | B.1.1.33 | 0.000842 |
ORF1ab/nsp3 | 350 | T350I | aCt | aTt | 2 | 2 | B.1.1.369 | 0.000892 |
ORF1ab/nsp3 | 350 | T350I | aCt | aTt | 2 | 2 | B.1.1.37 | 0.000386 |
ORF1ab/nsp3 | 350 | T350I | aCt | aTt | 2 | 2 | B.1.1.397 | 0.004505 |
ORF1ab/nsp3 | 350 | T350I | aCt | aTt | 2 | 2 | B.1.1.413 | 0.013793 |
ORF1ab/nsp3 | 350 | T350T | acT | acC | 1 | 2 | B.1.1.519 | 0.00004 |
ORF1ab/nsp3 | 350 | T350T | acT | acG | 1 | 2 | B.1.1.519 | 0.00004 |
ORF1ab/nsp3 | 350 | T350S | aCt | aGt | 2 | 2 | B.1.1.7 | 0.000002 |
ORF1ab/nsp3 | 350 | T350I | aCt | aTt | 2 | 2 | B.1.110.3 | 0.001437 |
ORF1ab/nsp3 | 350 | T350I | aCt | aTt | 2 | 2 | B.1.111 | 0.00235 |
ORF1ab/nsp3 | 350 | T350T | acT | acA | 2 | 2 | B.1.111 | 0.00235 |
ORF1ab/nsp3 | 350 | T350I | aCt | aTt | 2 | 2 | B.1.126 | 0.002551 |
ORF1ab/nsp3 | 350 | T350T | acT | acA | 2 | 2 | B.1.149 | 0.006849 |
ORF1ab/nsp3 | 350 | T350T | acT | acA | 2 | 2 | B.1.177 | 0.000026 |
ORF1ab/nsp3 | 350 | T350I | aCt | aTt | 2 | 2 | B.1.177.17 | 0.001642 |
ORF1ab/nsp3 | 350 | T350I | aCt | aTt | 2 | 2 | B.1.177.21 | 0.000153 |
ORF1ab/nsp3 | 350 | T350I | aCt | aTt | 2 | 2 | B.1.177.35 | 0.001382 |
ORF1ab/nsp3 | 350 | T350I | aCt | aTt | 2 | 2 | B.1.177.41 | 0.005 |
ORF1ab/nsp3 | 350 | T350I | aCt | aTt | 2 | 2 | B.1.177.60 | 0.000437 |
ORF1ab/nsp3 | 350 | T350I | aCt | aTt | 2 | 2 | B.1.177.7 | 0.00033 |
ORF1ab/nsp3 | 350 | T350N | aCt | aAt | 2 | 2 | B.1.177.75 | 0.002081 |
ORF1ab/nsp3 | 350 | T350I | aCt | aTt | 2 | 2 | B.1.177.81 | 0.000379 |
ORF1ab/nsp3 | 350 | T350T | acT | acC | 2 | 2 | B.1.2 | 0.000018 |
ORF1ab/nsp3 | 350 | T350I | aCt | aTt | 2 | 2 | B.1.22 | 0.002635 |
ORF1ab/nsp3 | 350 | T350A | Act | Gct | 2 | 2 | B.1.258 | 0.000133 |
ORF1ab/nsp3 | 350 | T350I | aCt | aTt | 2 | 2 | B.1.311 | 0.000549 |
ORF1ab/nsp3 | 350 | T350I | aCt | aTt | 2 | 2 | B.1.470 | 0.002809 |
ORF1ab/nsp3 | 350 | T350I | aCt | aTt | 2 | 2 | B.1.480 | 0.004975 |
ORF1ab/nsp3 | 350 | T350T | acT | acG | 2 | 2 | B.1.526 | 0.000047 |
ORF1ab/nsp3 | 350 | T350I | aCt | aTt | 2 | 2 | B.1.533 | 0.019231 |
ORF1ab/nsp3 | 350 | T350I | aCt | aTt | 2 | 2 | B.1.564 | 0.000852 |
ORF1ab/nsp3 | 350 | T350del | ACT | --- | 2 | 2 | B.1.596 | 0.000174 |
ORF1ab/nsp3 | 350 | T350I | aCt | aTt | 2 | 2 | B.1.9.4 | 0.01227 |
ORF1ab/nsp3 | 350 | T350I | aCt | aTt | 2 | 2 | B.3 | 0.001661 |
ORF1ab/nsp3 | 350 | T350I | aCt | aTt | 2 | 2 | C.36.3 | 0.001134 |
ORF1ab/nsp3 | 350 | T350I | aCt | aTt | 2 | 2 | C.37.1 | 0.005236 |
ORF1ab/nsp3 | 350 | T350A | Act | Gct | 2 | 2 | P.1 | 0.000032 |
ORF1ab/nsp3 | 350 | T350I | aCt | aTt | 2 | 2 | P.1.13 | 0.001797 |
ORF1ab/nsp3 | 350 | T350I | aCt | aTt | 2 | 2 | P.1.17 | 0.000324 |
ORF1ab/nsp3 | 350 | T350S | Act | Tct | 2 | 2 | P.1.17 | 0.000324 |
ORF1ab/nsp3 | 350 | T350P | Act | Cct | 1 | 2 | P.1.2 | 0.001156 |
ORF1ab/nsp3 | 350 | T350P | AcT | CcC | 1 | 2 | P.1.2 | 0.001156 |
ORF1ab/nsp3 | 350 | T350I | aCt | aTt | 2 | 2 | R.1 | 0.00018 |
ORF1ab/nsp3 | 350 | T350K | aCT | aAA | 1 | 1 | 0.055556 | |
ORF1ab/nsp3 | 350 | T350L | ACT | TTA | 1 | 1 | 0.055556 | |
ORF1ab/nsp3 | 350 | T350X | ACT | TAA | 1 | 1 | 0.055556 | |
ORF1ab/nsp3 | 350 | T350T | acT | acA | 1 | 1 | A.2 | 0.000662 |
ORF1ab/nsp3 | 350 | T350I | aCt | aTt | 1 | 1 | A.2.2 | 0.001689 |
ORF1ab/nsp3 | 350 | T350I | aCt | aTt | 1 | 1 | A.2.4 | 0.003367 |
ORF1ab/nsp3 | 350 | T350A | Act | Gct | 1 | 1 | A.2.5 | 0.000499 |
ORF1ab/nsp3 | 350 | T350I | aCt | aTt | 1 | 1 | A.2.5 | 0.000499 |
ORF1ab/nsp3 | 350 | T350I | aCt | aTt | 1 | 1 | A.2.5.1 | 0.004808 |
ORF1ab/nsp3 | 350 | T350F | ACT | TTC | 1 | 1 | A.23.1 | 0.000704 |
ORF1ab/nsp3 | 350 | T350I | aCt | aTt | 1 | 1 | A.3 | 0.002096 |
ORF1ab/nsp3 | 350 | T350N | aCt | aAt | 1 | 1 | AL.1 | 0.012987 |
ORF1ab/nsp3 | 350 | T350K | aCT | aAA | 1 | 1 | All | 0 |
ORF1ab/nsp3 | 350 | T350L | ACT | TTA | 1 | 1 | All | 0 |
ORF1ab/nsp3 | 350 | T350X | ACT | TAA | 1 | 1 | All | 0 |
ORF1ab/nsp3 | 350 | T350H | ACt | CAt | 1 | 1 | All | 0 |
ORF1ab/nsp3 | 350 | T350V | ACt | GTt | 1 | 1 | AU.3 | 0.00211 |
ORF1ab/nsp3 | 350 | T350S | aCt | aGt | 1 | 1 | AY.102 | 0.000027 |
ORF1ab/nsp3 | 350 | T350I | aCt | aTt | 1 | 1 | AY.108 | 0.001103 |
ORF1ab/nsp3 | 350 | T350N | aCt | aAt | 1 | 1 | AY.108 | 0.001103 |
ORF1ab/nsp3 | 350 | T350N | aCt | aAt | 1 | 1 | AY.110 | 0.000113 |
ORF1ab/nsp3 | 350 | T350T | acT | acA | 1 | 1 | AY.110 | 0.000113 |
ORF1ab/nsp3 | 350 | T350del | ACT | --- | 1 | 1 | AY.113 | 0.000142 |
ORF1ab/nsp3 | 350 | T350N | aCt | aAt | 1 | 1 | AY.118 | 0.000063 |
ORF1ab/nsp3 | 350 | T350del | ACT | --- | 1 | 1 | AY.119 | 0.000035 |
ORF1ab/nsp3 | 350 | T350T | acT | acA | 1 | 1 | AY.120 | 0.000037 |
ORF1ab/nsp3 | 350 | T350I | aCt | aTt | 1 | 1 | AY.120.2.1 | 0.000498 |
ORF1ab/nsp3 | 350 | T350I | aCt | aTt | 1 | 1 | AY.14 | 0.000088 |
ORF1ab/nsp3 | 350 | T350A | Act | Gct | 1 | 1 | AY.16 | 0.00038 |
ORF1ab/nsp3 | 350 | T350N | aCt | aAt | 1 | 1 | AY.16.1 | 0.00047 |
ORF1ab/nsp3 | 350 | T350I | aCt | aTt | 1 | 1 | AY.19 | 0.00114 |
ORF1ab/nsp3 | 350 | T350del | ACT | --- | 1 | 1 | AY.23 | 0.00007 |
ORF1ab/nsp3 | 350 | T350A | Act | Gct | 1 | 1 | AY.25 | 0.000006 |
ORF1ab/nsp3 | 350 | T350del | ACT | --- | 1 | 1 | AY.26 | 0.000028 |
ORF1ab/nsp3 | 350 | T350A | Act | Gct | 1 | 1 | AY.29 | 0.000016 |
ORF1ab/nsp3 | 350 | T350I | aCt | aTt | 1 | 1 | AY.29.1 | 0.000221 |
ORF1ab/nsp3 | 350 | T350S | aCt | aGt | 1 | 1 | AY.30 | 0.000396 |
ORF1ab/nsp3 | 350 | T350T | acT | acC | 1 | 1 | AY.32 | 0.000532 |
ORF1ab/nsp3 | 350 | T350A | Act | Gct | 1 | 1 | AY.35 | 0.000233 |
ORF1ab/nsp3 | 350 | T350I | aCt | aTt | 1 | 1 | AY.37 | 0.000316 |
ORF1ab/nsp3 | 350 | T350N | aCt | aAt | 1 | 1 | AY.39 | 0.000025 |
ORF1ab/nsp3 | 350 | T350T | acT | acA | 1 | 1 | AY.4.3 | 0.000842 |
ORF1ab/nsp3 | 350 | T350del | ACT | --- | 1 | 1 | AY.4.5 | 0.000107 |
ORF1ab/nsp3 | 350 | T350I | aCt | aTt | 1 | 1 | AY.40 | 0.000964 |
ORF1ab/nsp3 | 350 | T350I | aCt | aTt | 1 | 1 | AY.41 | 0.000294 |
ORF1ab/nsp3 | 350 | T350A | Act | Gct | 1 | 1 | AY.42 | 0.00004 |
ORF1ab/nsp3 | 350 | T350del1 | acT | ac- | 1 | 1 | AY.44 | 0.000006 |
ORF1ab/nsp3 | 350 | T350del | ACT | --- | 1 | 1 | AY.44 | 0.000006 |
ORF1ab/nsp3 | 350 | T350T | acT | acA | 1 | 1 | AY.46 | 0.000104 |
ORF1ab/nsp3 | 350 | T350T | acT | acA | 1 | 1 | AY.46.3 | 0.000934 |
ORF1ab/nsp3 | 350 | T350N | aCt | aAt | 1 | 1 | AY.46.5 | 0.000198 |
ORF1ab/nsp3 | 350 | T350I | aCt | aTt | 1 | 1 | AY.48 | 0.000465 |
ORF1ab/nsp3 | 350 | T350I | aCt | aTt | 1 | 1 | AY.5.3 | 0.000337 |
ORF1ab/nsp3 | 350 | T350I | aCt | aTt | 1 | 1 | AY.56 | 0.001605 |
ORF1ab/nsp3 | 350 | T350I | aCt | aTt | 1 | 1 | AY.60 | 0.000938 |
ORF1ab/nsp3 | 350 | T350I | aCt | aTt | 1 | 1 | AY.65 | 0.000533 |
ORF1ab/nsp3 | 350 | T350del | ACT | --- | 1 | 1 | AY.67 | 0.000464 |
ORF1ab/nsp3 | 350 | T350I | aCt | aTt | 1 | 1 | AY.68 | 0.000274 |
ORF1ab/nsp3 | 350 | T350A | Act | Gct | 1 | 1 | AY.7 | 0.000196 |
ORF1ab/nsp3 | 350 | T350I | aCt | aTt | 1 | 1 | AY.7.1 | 0.000113 |
ORF1ab/nsp3 | 350 | T350I | aCt | aTt | 1 | 1 | AY.7.2 | 0.000559 |
ORF1ab/nsp3 | 350 | T350T | acT | acG | 1 | 1 | AY.70 | 0.000209 |
ORF1ab/nsp3 | 350 | T350I | aCt | aTt | 1 | 1 | AY.74 | 0.000116 |
ORF1ab/nsp3 | 350 | T350T | acT | acC | 1 | 1 | AY.75 | 0.000056 |
ORF1ab/nsp3 | 350 | T350I | aCt | aTt | 1 | 1 | AY.79 | 0.001211 |
ORF1ab/nsp3 | 350 | T350I | aCt | aTt | 1 | 1 | AY.8 | 0.000606 |
ORF1ab/nsp3 | 350 | T350I | aCt | aTt | 1 | 1 | AY.82 | 0.001357 |
ORF1ab/nsp3 | 350 | T350del | ACT | --- | 1 | 1 | AY.84 | 0.000437 |
ORF1ab/nsp3 | 350 | T350I | aCt | aTt | 1 | 1 | AY.85 | 0.000427 |
ORF1ab/nsp3 | 350 | T350I | aCt | aTt | 1 | 1 | AY.87 | 0.000833 |
ORF1ab/nsp3 | 350 | T350T | acT | acG | 1 | 1 | AY.9.1 | 0.000084 |
ORF1ab/nsp3 | 350 | T350D | ACT | GAC | 1 | 1 | AY.9.2 | 0.000037 |
ORF1ab/nsp3 | 350 | T350T | acT | acG | 1 | 1 | AY.9.2 | 0.000037 |
ORF1ab/nsp3 | 350 | T350I | aCt | aTt | 1 | 1 | AY.91 | 0.00073 |
ORF1ab/nsp3 | 350 | T350A | Act | Gct | 1 | 1 | AY.92 | 0.000287 |
ORF1ab/nsp3 | 350 | T350I | aCt | aTt | 1 | 1 | AY.93 | 0.000273 |
ORF1ab/nsp3 | 350 | T350I | aCt | aTt | 1 | 1 | AY.95 | 0.000761 |
ORF1ab/nsp3 | 350 | T350T | acT | acA | 1 | 1 | AY.98.1 | 0.000048 |
ORF1ab/nsp3 | 350 | T350del | ACT | --- | 1 | 1 | AY.99 | 0.001049 |
ORF1ab/nsp3 | 350 | T350N | aCt | aAt | 1 | 1 | AY.99.2 | 0.000092 |
ORF1ab/nsp3 | 350 | T350F | ACt | TTt | 1 | 1 | B | 0.000128 |
ORF1ab/nsp3 | 350 | T350T | acT | acC | 1 | 1 | B | 0.000128 |
ORF1ab/nsp3 | 350 | T350P | Act | Cct | 1 | 1 | B.1 | 0.000009 |
ORF1ab/nsp3 | 350 | T350A | Act | Gct | 1 | 1 | B.1.1 | 0.000018 |
ORF1ab/nsp3 | 350 | T350D | ACt | GAt | 1 | 1 | B.1.1 | 0.000018 |
ORF1ab/nsp3 | 350 | T350del | ACT | --- | 1 | 1 | B.1.1 | 0.000018 |
ORF1ab/nsp3 | 350 | T350I | aCt | aTt | 1 | 1 | B.1.1.138 | 0.006061 |
ORF1ab/nsp3 | 350 | T350I | aCt | aTt | 1 | 1 | B.1.1.148 | 0.008772 |
ORF1ab/nsp3 | 350 | T350T | acT | acG | 1 | 1 | B.1.1.153 | 0.001095 |
ORF1ab/nsp3 | 350 | T350I | aCt | aTt | 1 | 1 | B.1.1.153 | 0.001095 |
ORF1ab/nsp3 | 350 | T350I | aCt | aTt | 1 | 1 | B.1.1.158 | 0.012195 |
ORF1ab/nsp3 | 350 | T350I | aCt | aTt | 1 | 1 | B.1.1.161 | 0.003534 |
ORF1ab/nsp3 | 350 | T350I | aCt | aTt | 1 | 1 | B.1.1.184 | 0.058824 |
ORF1ab/nsp3 | 350 | T350I | aCt | aTt | 1 | 1 | B.1.1.189 | 0.001513 |
ORF1ab/nsp3 | 350 | T350I | aCt | aTt | 1 | 1 | B.1.1.236 | 0.006897 |
ORF1ab/nsp3 | 350 | T350A | Act | Gct | 1 | 1 | B.1.1.25 | 0.000569 |
ORF1ab/nsp3 | 350 | T350I | aCt | aTt | 1 | 1 | B.1.1.254 | 0.011236 |
ORF1ab/nsp3 | 350 | T350I | aCt | aTt | 1 | 1 | B.1.1.255 | 0.00303 |
ORF1ab/nsp3 | 350 | T350I | aCt | aTt | 1 | 1 | B.1.1.279 | 0.001121 |
ORF1ab/nsp3 | 350 | T350I | aCt | aTt | 1 | 1 | B.1.1.302 | 0.002075 |
ORF1ab/nsp3 | 350 | T350I | aCt | aTt | 1 | 1 | B.1.1.305 | 0.003861 |
ORF1ab/nsp3 | 350 | T350del | ACT | --- | 1 | 1 | B.1.1.306 | 0.000438 |
ORF1ab/nsp3 | 350 | T350N | aCt | aAt | 1 | 1 | B.1.1.311 | 0.000358 |
ORF1ab/nsp3 | 350 | T350T | acT | acC | 1 | 1 | B.1.1.312 | 0.001912 |
ORF1ab/nsp3 | 350 | T350del | ACT | --- | 1 | 1 | B.1.1.33 | 0.000421 |
ORF1ab/nsp3 | 350 | T350I | aCt | aTt | 1 | 1 | B.1.1.337 | 0.003597 |
ORF1ab/nsp3 | 350 | T350del | ACT | --- | 1 | 1 | B.1.1.348 | 0.000796 |
ORF1ab/nsp3 | 350 | T350I | aCt | aTt | 1 | 1 | B.1.1.354 | 0.004386 |
ORF1ab/nsp3 | 350 | T350I | aCt | aTt | 1 | 1 | B.1.1.359 | 0.027778 |
ORF1ab/nsp3 | 350 | T350A | Act | Gct | 1 | 1 | B.1.1.37 | 0.000193 |
ORF1ab/nsp3 | 350 | T350I | aCt | aTt | 1 | 1 | B.1.1.370 | 0.012658 |
ORF1ab/nsp3 | 350 | T350I | aCt | aTt | 1 | 1 | B.1.1.371 | 0.010417 |
ORF1ab/nsp3 | 350 | T350I | aCt | aTt | 1 | 1 | B.1.1.372 | 0.000689 |
ORF1ab/nsp3 | 350 | T350I | aCt | aTt | 1 | 1 | B.1.1.373 | 0.02381 |
ORF1ab/nsp3 | 350 | T350I | aCt | aTt | 1 | 1 | B.1.1.39 | 0.00051 |
ORF1ab/nsp3 | 350 | T350I | aCt | aTt | 1 | 1 | B.1.1.40 | 0.034483 |
ORF1ab/nsp3 | 350 | T350I | aCt | aTt | 1 | 1 | B.1.1.41 | 0.006329 |
ORF1ab/nsp3 | 350 | T350I | aCt | aTt | 1 | 1 | B.1.1.411 | 0.014706 |
ORF1ab/nsp3 | 350 | T350I | aCt | aTt | 1 | 1 | B.1.1.429 | 0.004608 |
ORF1ab/nsp3 | 350 | T350I | aCt | aTt | 1 | 1 | B.1.1.448 | 0.002033 |
ORF1ab/nsp3 | 350 | T350I | aCt | aTt | 1 | 1 | B.1.1.485 | 0.016667 |
ORF1ab/nsp3 | 350 | T350N | aCt | aAt | 1 | 1 | B.1.1.485 | 0.016667 |
ORF1ab/nsp3 | 350 | T350I | aCt | aTt | 1 | 1 | B.1.1.486 | 0.001577 |
ORF1ab/nsp3 | 350 | T350I | aCt | aTt | 1 | 1 | B.1.1.51 | 0.001718 |
ORF1ab/nsp3 | 350 | T350I | aCt | aTt | 1 | 1 | B.1.1.525 | 0.005464 |
ORF1ab/nsp3 | 350 | T350I | aCt | aTt | 1 | 1 | B.1.1.61 | 0.008772 |
ORF1ab/nsp3 | 350 | T350Y | ACt | TAt | 1 | 1 | B.1.1.83 | 0.00271 |
ORF1ab/nsp3 | 350 | T350I | aCt | aTt | 1 | 1 | B.1.104 | 0.00369 |
ORF1ab/nsp3 | 350 | T350del | ACT | --- | 1 | 1 | B.1.110.3 | 0.000718 |
ORF1ab/nsp3 | 350 | T350I | aCt | aTt | 1 | 1 | B.1.147 | 0.000756 |
ORF1ab/nsp3 | 350 | T350del | ACT | --- | 1 | 1 | B.1.160 | 0.000031 |
ORF1ab/nsp3 | 350 | T350I | aCt | aTt | 1 | 1 | B.1.160.7 | 0.002079 |
ORF1ab/nsp3 | 350 | T350N | aCt | aAt | 1 | 1 | B.1.177 | 0.000013 |
ORF1ab/nsp3 | 350 | T350I | aCt | aTt | 1 | 1 | B.1.177.12 | 0.000152 |
ORF1ab/nsp3 | 350 | T350I | aCt | aTt | 1 | 1 | B.1.177.18 | 0.00116 |
ORF1ab/nsp3 | 350 | T350I | aCt | aTt | 1 | 1 | B.1.177.4 | 0.000211 |
ORF1ab/nsp3 | 350 | T350I | aCt | aTt | 1 | 1 | B.1.177.42 | 0.000894 |
ORF1ab/nsp3 | 350 | T350I | aCt | aTt | 1 | 1 | B.1.177.44 | 0.000519 |
ORF1ab/nsp3 | 350 | T350I | aCt | aTt | 1 | 1 | B.1.177.50 | 0.004695 |
ORF1ab/nsp3 | 350 | T350del1 | acT | ac- | 1 | 1 | B.1.177.73 | 0.000566 |
ORF1ab/nsp3 | 350 | T350I | aCt | aTt | 1 | 1 | B.1.177.75 | 0.001041 |
ORF1ab/nsp3 | 350 | T350T | acT | acA | 1 | 1 | B.1.177.79 | 0.002342 |
ORF1ab/nsp3 | 350 | T350I | aCt | aTt | 1 | 1 | B.1.177.9 | 0.001332 |
ORF1ab/nsp3 | 350 | T350del1 | acT | ac- | 1 | 1 | B.1.2 | 0.000009 |
ORF1ab/nsp3 | 350 | T350del | ACT | --- | 1 | 1 | B.1.2 | 0.000009 |
ORF1ab/nsp3 | 350 | T350A | Act | Gct | 1 | 1 | B.1.2 | 0.000009 |
ORF1ab/nsp3 | 350 | T350I | aCt | aTt | 1 | 1 | B.1.206 | 0.000816 |
ORF1ab/nsp3 | 350 | T350I | aCt | aTt | 1 | 1 | B.1.214.2 | 0.0006 |
ORF1ab/nsp3 | 350 | T350del | ACT | --- | 1 | 1 | B.1.218 | 0.005155 |
ORF1ab/nsp3 | 350 | T350A | Act | Gct | 1 | 1 | B.1.221 | 0.000071 |
ORF1ab/nsp3 | 350 | T350I | aCt | aTt | 1 | 1 | B.1.223 | 0.002778 |
ORF1ab/nsp3 | 350 | T350T | acT | acC | 1 | 1 | B.1.232 | 0.000537 |
ORF1ab/nsp3 | 350 | T350I | aCt | aTt | 1 | 1 | B.1.240 | 0.000216 |
ORF1ab/nsp3 | 350 | T350T | acT | acC | 1 | 1 | B.1.240 | 0.000216 |
ORF1ab/nsp3 | 350 | T350I | aCt | aTt | 1 | 1 | B.1.258.11 | 0.000396 |
ORF1ab/nsp3 | 350 | T350H | ACt | CAt | 1 | 1 | B.1.258.17 | 0.000104 |
ORF1ab/nsp3 | 350 | T350I | aCt | aTt | 1 | 1 | B.1.302 | 0.013333 |
ORF1ab/nsp3 | 350 | T350I | aCt | aTt | 1 | 1 | B.1.305 | 0.002151 |
ORF1ab/nsp3 | 350 | T350A | Act | Gct | 1 | 1 | B.1.324 | 0.001605 |
ORF1ab/nsp3 | 350 | T350I | aCt | aTt | 1 | 1 | B.1.337 | 0.005587 |
ORF1ab/nsp3 | 350 | T350A | Act | Gct | 1 | 1 | B.1.351 | 0.00003 |
ORF1ab/nsp3 | 350 | T350I | aCt | aTt | 1 | 1 | B.1.351.5 | 0.0006 |
ORF1ab/nsp3 | 350 | T350T | acT | acC | 1 | 1 | B.1.356 | 0.001727 |
ORF1ab/nsp3 | 350 | T350del1 | Act | -ct | 1 | 1 | B.1.36 | 0.000146 |
ORF1ab/nsp3 | 350 | T350A | Act | Gct | 1 | 1 | B.1.36 | 0.000146 |
ORF1ab/nsp3 | 350 | T350del | ACT | --- | 1 | 1 | B.1.36 | 0.000146 |
ORF1ab/nsp3 | 350 | T350I | aCt | aTt | 1 | 1 | B.1.36.10 | 0.004785 |
ORF1ab/nsp3 | 350 | T350I | aCt | aTt | 1 | 1 | B.1.36.16 | 0.001425 |
ORF1ab/nsp3 | 350 | T350I | aCt | aTt | 1 | 1 | B.1.36.17 | 0.000494 |
ORF1ab/nsp3 | 350 | T350I | aCt | aTt | 1 | 1 | B.1.36.27 | 0.000763 |
ORF1ab/nsp3 | 350 | T350T | acT | acG | 1 | 1 | B.1.375 | 0.00082 |
ORF1ab/nsp3 | 350 | T350I | aCt | aTt | 1 | 1 | B.1.397 | 0.004854 |
ORF1ab/nsp3 | 350 | T350T | acT | acC | 1 | 1 | B.1.416 | 0.001269 |
ORF1ab/nsp3 | 350 | T350I | aCt | aTt | 1 | 1 | B.1.416 | 0.001269 |
ORF1ab/nsp3 | 350 | T350I | aCt | aTt | 1 | 1 | B.1.424 | 0.008065 |
ORF1ab/nsp3 | 350 | T350T | acT | acC | 1 | 1 | B.1.427 | 0.00005 |
ORF1ab/nsp3 | 350 | T350del | ACT | --- | 1 | 1 | B.1.429 | 0.000024 |
ORF1ab/nsp3 | 350 | T350I | aCt | aTt | 1 | 1 | B.1.460 | 0.017857 |
ORF1ab/nsp3 | 350 | T350I | aCt | aTt | 1 | 1 | B.1.465 | 0.003802 |
ORF1ab/nsp3 | 350 | T350T | acT | acC | 1 | 1 | B.1.470 | 0.001404 |
ORF1ab/nsp3 | 350 | T350A | Act | Gct | 1 | 1 | B.1.497 | 0.000315 |
ORF1ab/nsp3 | 350 | T350N | aCt | aAt | 1 | 1 | B.1.497 | 0.000315 |
ORF1ab/nsp3 | 350 | T350I | aCt | aTt | 1 | 1 | B.1.499 | 0.00105 |
ORF1ab/nsp3 | 350 | T350N | aCt | aAt | 1 | 1 | B.1.525 | 0.000113 |
ORF1ab/nsp3 | 350 | T350del1 | acT | ac- | 1 | 1 | B.1.526 | 0.000024 |
ORF1ab/nsp3 | 350 | T350I | aCt | aTt | 1 | 1 | B.1.543 | 0.01 |
ORF1ab/nsp3 | 350 | T350I | aCt | aTt | 1 | 1 | B.1.546 | 0.003704 |
ORF1ab/nsp3 | 350 | T350I | aCt | aTt | 1 | 1 | B.1.561 | 0.000397 |
ORF1ab/nsp3 | 350 | T350A | Act | Gct | 1 | 1 | B.1.561 | 0.000397 |
ORF1ab/nsp3 | 350 | T350T | acT | acA | 1 | 1 | B.1.575 | 0.000303 |
ORF1ab/nsp3 | 350 | T350I | aCt | aTt | 1 | 1 | B.1.575.1 | 0.002439 |
ORF1ab/nsp3 | 350 | T350del1 | acT | ac- | 1 | 1 | B.1.595 | 0.000261 |
ORF1ab/nsp3 | 350 | T350I | aCt | aTt | 1 | 1 | B.1.599 | 0.00365 |
ORF1ab/nsp3 | 350 | T350I | aCt | aTt | 1 | 1 | B.1.603 | 0.010638 |
ORF1ab/nsp3 | 350 | T350I | aCt | aTt | 1 | 1 | B.1.619 | 0.000871 |
ORF1ab/nsp3 | 350 | T350T | acT | acC | 1 | 1 | B.1.621 | 0.000089 |
ORF1ab/nsp3 | 350 | T350del | ACT | --- | 1 | 1 | B.1.621.1 | 0.000506 |
ORF1ab/nsp3 | 350 | T350N | aCt | aAt | 1 | 1 | B.1.621.1 | 0.000506 |
ORF1ab/nsp3 | 350 | T350A | Act | Gct | 1 | 1 | B.1.623 | 0.000536 |
ORF1ab/nsp3 | 350 | T350I | aCt | aTt | 1 | 1 | B.1.623 | 0.000536 |
ORF1ab/nsp3 | 350 | T350I | aCt | aTt | 1 | 1 | B.1.625 | 0.002353 |
ORF1ab/nsp3 | 350 | T350del | ACT | --- | 1 | 1 | B.1.627 | 0.00202 |
ORF1ab/nsp3 | 350 | T350I | aCt | aTt | 1 | 1 | B.1.627 | 0.00202 |
ORF1ab/nsp3 | 350 | T350T | acT | acC | 1 | 1 | B.1.628 | 0.000352 |
ORF1ab/nsp3 | 350 | T350I | aCt | aTt | 1 | 1 | B.1.631 | 0.003367 |
ORF1ab/nsp3 | 350 | T350I | aCt | aTt | 1 | 1 | B.1.634 | 0.003425 |
ORF1ab/nsp3 | 350 | T350I | aCt | aTt | 1 | 1 | B.10 | 0.008264 |
ORF1ab/nsp3 | 350 | T350I | aCt | aTt | 1 | 1 | B.34 | 0.013699 |
ORF1ab/nsp3 | 350 | T350del | ACT | --- | 1 | 1 | B.57 | 0.015152 |
ORF1ab/nsp3 | 350 | T350I | aCt | aTt | 1 | 1 | B.6 | 0.00091 |
ORF1ab/nsp3 | 350 | T350I | aCt | aTt | 1 | 1 | C.13 | 0.025641 |
ORF1ab/nsp3 | 350 | T350I | aCt | aTt | 1 | 1 | C.14 | 0.004329 |
ORF1ab/nsp3 | 350 | T350I | aCt | aTt | 1 | 1 | C.36 | 0.000911 |
ORF1ab/nsp3 | 350 | T350I | aCt | aTt | 1 | 1 | C.38 | 0.008065 |
ORF1ab/nsp3 | 350 | T350I | aCt | aTt | 1 | 1 | C.39 | 0.018868 |
ORF1ab/nsp3 | 350 | T350I | aCt | aTt | 1 | 1 | C.4 | 0.01 |
ORF1ab/nsp3 | 350 | T350S | Act | Tct | 1 | 1 | D.2 | 0.000075 |
ORF1ab/nsp3 | 350 | T350I | aCt | aTt | 1 | 1 | N.3 | 0.005814 |
ORF1ab/nsp3 | 350 | T350del | ACT | --- | 1 | 1 | N.6 | 0.007092 |
ORF1ab/nsp3 | 350 | T350I | aCt | aTt | 1 | 1 | N.6 | 0.007092 |
ORF1ab/nsp3 | 350 | T350N | aCt | aAt | 1 | 1 | P.1 | 0.000016 |
ORF1ab/nsp3 | 350 | T350del1 | acT | ac- | 1 | 1 | P.1.1 | 0.000318 |
ORF1ab/nsp3 | 350 | T350del1 | AcT | -cN | 1 | 1 | P.1.15 | 0.000232 |
ORF1ab/nsp3 | 350 | T350I | aCt | aTt | 1 | 1 | P.1.15 | 0.000232 |
ORF1ab/nsp3 | 350 | T350S | Act | Tct | 1 | 1 | P.1.2 | 0.001156 |
ORF1ab/nsp3 | 350 | T350T | acT | acC | 1 | 1 | P.1.2 | 0.001156 |
ORF1ab/nsp3 | 350 | T350del | ACT | --- | 1 | 1 | P.1.7 | 0.000319 |
ORF1ab/nsp3 | 350 | T350I | aCt | aTt | 1 | 1 | P.2 | 0.000187 |
ORF1ab/nsp3 | 350 | T350S | Act | Tct | 1 | 1 | P.2 | 0.000187 |
ORF1ab/nsp3 | 350 | T350A | Act | Gct | 1 | 1 | P.2 | 0.000187 |
ORF1ab/nsp3 | 350 | T350I | aCt | aTt | 1 | 1 | P.3 | 0.001595 |
ORF1ab/nsp3 | 350 | T350A | Act | Gct | 1 | 1 | Q.1 | 0.000126 |
ORF1ab/nsp3 | 350 | T350T | acT | acC | 1 | 1 | R.1 | 0.00009 |
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CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk
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