CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF1ab/nsp3 : CodonNum = 350

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF1ab/nsp3350T350IT1168InonsynaCtaTt11269112620.9993793767-3769
ORF1ab/nsp3350T350IT1168InonsynaCTaTA1126950.0004436953767-3769
ORF1ab/nsp3350T350IT1168InonsynaCTaTC1126920.0001774783767-3769
ORF1ab/nsp3350T350NT1168NnonsynaCtaAt110311010.9981873767-3769
ORF1ab/nsp3350T350NT1168NnonsynaCTaAC110320.001813243767-3769
ORF1ab/nsp3350T350TT1168TsynacTacC2741580.5766423767-3769
ORF1ab/nsp3350T350TT1168TsynacTacA274810.295623767-3769
ORF1ab/nsp3350T350TT1168TsynacTacG274350.1277373767-3769
ORF1ab/nsp3350T350AT1168AnonsynActGct2672620.9812733767-3769
ORF1ab/nsp3350T350AT1168AnonsynAcTGcA26730.0112363767-3769
ORF1ab/nsp3350T350AT1168AnonsynAcTGcC26720.007490643767-3769
ORF1ab/nsp3350T350delT1168deldelACT---949413767-3769
ORF1ab/nsp3350T350ST1168SnonsynActTct58280.4827593767-3769
ORF1ab/nsp3350T350ST1168SnonsynaCtaGt58160.2758623767-3769
ORF1ab/nsp3350T350ST1168SnonsynAcTTcC58130.2241383767-3769
ORF1ab/nsp3350T350ST1168SnonsynAcTTcA5810.01724143767-3769
ORF1ab/nsp3350T350PT1168PnonsynActCct34200.5882353767-3769
ORF1ab/nsp3350T350PT1168PnonsynAcTCcC34120.3529413767-3769
ORF1ab/nsp3350T350PT1168PnonsynAcTCcG3420.05882353767-3769
ORF1ab/nsp3350T350del1T1168del1delacTac-1060.63767-3769
ORF1ab/nsp3350T350del1T1168del1delAcT-cN1020.23767-3769
ORF1ab/nsp3350T350del1T1168del1delAct-ct1010.13767-3769
ORF1ab/nsp3350T350del1T1168del1delaCTaT-1010.13767-3769
ORF1ab/nsp3350T350VT1168VnonsynACTGTA950.5555563767-3769
ORF1ab/nsp3350T350VT1168VnonsynACtGTt930.3333333767-3769
ORF1ab/nsp3350T350VT1168VnonsynACTGTG910.1111113767-3769
ORF1ab/nsp3350T350YT1168YnonsynACtTAt530.63767-3769
ORF1ab/nsp3350T350RT1168RnonsynACtCGt520.43767-3769
ORF1ab/nsp3350T350YT1168YnonsynACTTAC520.43767-3769
ORF1ab/nsp3350T350RT1168RnonsynaCTaGG520.43767-3769
ORF1ab/nsp3350T350RT1168RnonsynaCTaGA510.23767-3769
ORF1ab/nsp3350T350GT1168GnonsynACtGGt430.753767-3769
ORF1ab/nsp3350T350FT1168FnonsynACtTTt420.53767-3769
ORF1ab/nsp3350T350FT1168FnonsynACTTTC420.53767-3769
ORF1ab/nsp3350T350GT1168GnonsynACTGGA410.253767-3769
ORF1ab/nsp3350T350WT1168WnonsynACTTGG2213767-3769
ORF1ab/nsp3350T350DT1168DnonsynACtGAt210.53767-3769
ORF1ab/nsp3350T350ET1168EnonsynACTGAA210.53767-3769
ORF1ab/nsp3350T350ET1168EnonsynACTGAG210.53767-3769
ORF1ab/nsp3350T350DT1168DnonsynACTGAC210.53767-3769
ORF1ab/nsp3350T350LT1168LnonsynACTTTA1113767-3769
ORF1ab/nsp3350T350XT1168XnonsynACTTAA1113767-3769
ORF1ab/nsp3350T350KT1168KnonsynaCTaAA1113767-3769
ORF1ab/nsp3350T350HT1168HnonsynACtCAt1113767-3769

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF1ab/nsp3350T350IaCtaTt1126211269All0.002154
ORF1ab/nsp3350T350IaCTaTA511269All0.000001
ORF1ab/nsp3350T350IaCTaTC211269All0
ORF1ab/nsp3350T350IaCtaTt25032503B.1.466.20.979264
ORF1ab/nsp3350T350IaCtaTt12651265AY.40.001969
ORF1ab/nsp3350T350IaCtaTt12551255B.1.1.70.001124
ORF1ab/nsp3350T350NaCtaAt11011103All0.000211
ORF1ab/nsp3350T350NaCTaAC21103All0
ORF1ab/nsp3350T350IaCtaTt786786AU.10.994937
ORF1ab/nsp3350T350IaCtaTt455455AU.30.959916
ORF1ab/nsp3350T350IaCtaTt406406AU.20.983051
ORF1ab/nsp3350T350IaCtaTt406406B.1.617.20.001529
ORF1ab/nsp3350T350NaCtaAt383383AY.4.20.008307
ORF1ab/nsp3350T350IaCtaTt349349AY.250.002099
ORF1ab/nsp3350T350NaCtaAt328328AW.11
ORF1ab/nsp3350T350TacTacC158274All0.00003
ORF1ab/nsp3350T350TacTacA81274All0.000015
ORF1ab/nsp3350T350TacTacG35274All0.000007
ORF1ab/nsp3350T350NaCtaAt268268B.1.1.70.00024
ORF1ab/nsp3350T350AActGct262267All0.00005
ORF1ab/nsp3350T350AAcTGcA3267All0.000001
ORF1ab/nsp3350T350AAcTGcC2267All0
ORF1ab/nsp3350T350IaCtaTt224224AY.1130.031895
ORF1ab/nsp3350T350IaCtaTt197197AY.260.005577
ORF1ab/nsp3350T350IaCtaTt193193B.10.001768
ORF1ab/nsp3350T350IaCtaTt172172B.1.5670.573333
ORF1ab/nsp3350T350IaCtaTt170170AY.440.001035
ORF1ab/nsp3350T350IaCtaTt165165B.1.20.001453
ORF1ab/nsp3350T350IaCtaTt155157AY.430.000687
ORF1ab/nsp3350T350IaCTaTA2157AY.430.000009
ORF1ab/nsp3350T350AActGct130132B.1.1.70.000116
ORF1ab/nsp3350T350AAcTGcC1132B.1.1.70.000001
ORF1ab/nsp3350T350AAcTGcA1132B.1.1.70.000001
ORF1ab/nsp3350T350IaCtaTt123123AY.1030.000764
ORF1ab/nsp3350T350IaCtaTt116116AY.1180.007267
ORF1ab/nsp3350T350IaCtaTt102102AY.200.003964
ORF1ab/nsp3350T350IaCtaTt9696AY.610.010059
ORF1ab/nsp3350T350delACT---9494All0.000018
ORF1ab/nsp3350T350IaCtaTt8282B.1.5250.009279
ORF1ab/nsp3350T350IaCtaTt6565B.1.5260.001528
ORF1ab/nsp3350T350IaCtaTt6363AY.1000.002898
ORF1ab/nsp3350T350IaCtaTt6262B.1.1.5260.219858
ORF1ab/nsp3350T350IaCtaTt6061B.1.10.001088
ORF1ab/nsp3350T350IaCTaTC161B.1.10.000018
ORF1ab/nsp3350T350SActTct2858All0.000005
ORF1ab/nsp3350T350SaCtaGt1658All0.000003
ORF1ab/nsp3350T350SAcTTcC1358All0.000002
ORF1ab/nsp3350T350SAcTTcA158All0
ORF1ab/nsp3350T350IaCtaTt5555AY.290.000868
ORF1ab/nsp3350T350IaCtaTt5555AY.30.000547
ORF1ab/nsp3350T350TacTacA5255B.10.000476
ORF1ab/nsp3350T350TacTacC255B.10.000018
ORF1ab/nsp3350T350TacTacG155B.10.000009
ORF1ab/nsp3350T350IaCtaTt5454AY.1190.001907
ORF1ab/nsp3350T350IaCtaTt4848B.1.177.860.008806
ORF1ab/nsp3350T350IaCtaTt4646P.10.000725
ORF1ab/nsp3350T350IaCtaTt4343AY.1140.009938
ORF1ab/nsp3350T350IaCtaTt4242B.1.1.5190.001668
ORF1ab/nsp3350T350AActGct4040AY.29.10.00882
ORF1ab/nsp3350T350TacTacC3537AY.40.000054
ORF1ab/nsp3350T350TacTacA137AY.40.000002
ORF1ab/nsp3350T350TacTacG137AY.40.000002
ORF1ab/nsp3350T350IaCtaTt3535B.1.1770.000461
ORF1ab/nsp3350T350PActCct2034All0.000004
ORF1ab/nsp3350T350PAcTCcC1234All0.000002
ORF1ab/nsp3350T350PAcTCcG234All0
ORF1ab/nsp3350T350AActGct3434AY.40.000053
ORF1ab/nsp3350T350TacTacC3434AY.440.000207
ORF1ab/nsp3350T350IaCtaTt3434B.1.4270.001717
ORF1ab/nsp3350T350IaCtaTt3333B.1.4290.000776
ORF1ab/nsp3350T350SActTct2133P.10.000331
ORF1ab/nsp3350T350SAcTTcC1133P.10.000173
ORF1ab/nsp3350T350SaCtaGt133P.10.000016
ORF1ab/nsp3350T350IaCtaTt3131B.1.6210.002744
ORF1ab/nsp3350T350PActCct1831P.10.000284
ORF1ab/nsp3350T350PAcTCcC1131P.10.000173
ORF1ab/nsp3350T350PAcTCcG231P.10.000032
ORF1ab/nsp3350T350IaCtaTt2930AY.1020.000769
ORF1ab/nsp3350T350IaCTaTA130AY.1020.000027
ORF1ab/nsp3350T350IaCtaTt3030AY.530.008626
ORF1ab/nsp3350T350IaCtaTt3030B.1.1.4340.010457
ORF1ab/nsp3350T350IaCtaTt3030B.1.160.250.333333
ORF1ab/nsp3350T350IaCtaTt2828AY.330.00187
ORF1ab/nsp3350T350NaCtaAt2828B.1.617.20.000105
ORF1ab/nsp3350T350IaCtaTt2727AY.350.006292
ORF1ab/nsp3350T350TacTacC1824B.1.1.70.000016
ORF1ab/nsp3350T350TacTacA424B.1.1.70.000004
ORF1ab/nsp3350T350TacTacG224B.1.1.70.000002
ORF1ab/nsp3350T350IaCtaTt2424B.1.3510.000713
ORF1ab/nsp3350T350IaCtaTt2323AY.390.000568
ORF1ab/nsp3350T350IaCtaTt2323AY.470.000715
ORF1ab/nsp3350T350IaCtaTt2323B.1.2320.012359
ORF1ab/nsp3350T350IaCtaTt2222AY.750.001232
ORF1ab/nsp3350T350IaCtaTt2222AY.99.20.002027
ORF1ab/nsp3350T350IaCtaTt2020B.1.4590.081633
ORF1ab/nsp3350T350IaCtaTt2020B.1.4620.144928
ORF1ab/nsp3350T350IaCtaTt1919AY.230.001325
ORF1ab/nsp3350T350IaCtaTt1919AY.60.000781
ORF1ab/nsp3350T350IaCtaTt1919B.1.1.2070.022459
ORF1ab/nsp3350T350TacTacG1218AY.430.000053
ORF1ab/nsp3350T350TacTacC418AY.430.000018
ORF1ab/nsp3350T350TacTacA218AY.430.000009
ORF1ab/nsp3350T350IaCtaTt1818B.1.1.2630.028037
ORF1ab/nsp3350T350IaCtaTt1717A.60.087179
ORF1ab/nsp3350T350IaCtaTt1717AY.1090.012574
ORF1ab/nsp3350T350IaCtaTt1717B.1.1.2910.012621
ORF1ab/nsp3350T350IaCtaTt1717B.1.1600.00053
ORF1ab/nsp3350T350IaCtaTt1717B.1.5650.013776
ORF1ab/nsp3350T350delACT---1717P.10.000268
ORF1ab/nsp3350T350IaCtaTt1616AY.340.001551
ORF1ab/nsp3350T350NaCtaAt1616AY.40.000025
ORF1ab/nsp3350T350IaCtaTt1515B.1.1.3330.016146
ORF1ab/nsp3350T350IaCtaTt1414AY.320.007455
ORF1ab/nsp3350T350IaCtaTt1414AY.50.000289
ORF1ab/nsp3350T350IaCtaTt1414B.1.3750.011475
ORF1ab/nsp3350T350delACT---1414P.1.150.003253
ORF1ab/nsp3350T350TacTacC713AY.250.000042
ORF1ab/nsp3350T350TacTacG613AY.250.000036
ORF1ab/nsp3350T350IaCtaTt1313B.1.177.820.006205
ORF1ab/nsp3350T350IaCtaTt1313B.1.177.870.009461
ORF1ab/nsp3350T350IaCtaTt1313B.1.4740.024715
ORF1ab/nsp3350T350IaCtaTt1212AY.90.000811
ORF1ab/nsp3350T350IaCtaTt1111B.1.1.1760.004833
ORF1ab/nsp3350T350IaCtaTt1111B.1.5240.015471
ORF1ab/nsp3350T350del1acTac-610All0.000001
ORF1ab/nsp3350T350del1AcT-cN210All0
ORF1ab/nsp3350T350del1aCTaT-110All0
ORF1ab/nsp3350T350del1Act-ct110All0
ORF1ab/nsp3350T350IaCtaTt1010AY.4.20.000217
ORF1ab/nsp3350T350NaCtaAt1010B.1.1.4640.014728
ORF1ab/nsp3350T350IaCtaTt1010B.1.2430.000696
ORF1ab/nsp3350T350delACT---1010P.1.120.00484
ORF1ab/nsp3350T350VACTGTA59All0.000001
ORF1ab/nsp3350T350VACtGTt39All0.000001
ORF1ab/nsp3350T350VACTGTG19All0
ORF1ab/nsp3350T350SaCtaGt99AY.46.50.001786
ORF1ab/nsp3350T350IaCtaTt99B.1.1.1920.020785
ORF1ab/nsp3350T350IaCtaTt99B.1.1.2840.000967
ORF1ab/nsp3350T350IaCtaTt99B.1.177.30.068702
ORF1ab/nsp3350T350IaCtaTt99B.1.177.580.011984
ORF1ab/nsp3350T350AActGct99B.1.617.20.000034
ORF1ab/nsp3350T350IaCtaTt99D.20.000675
ORF1ab/nsp3350T350IaCtaTt88AY.130.001288
ORF1ab/nsp3350T350IaCtaTt88AY.16.10.003759
ORF1ab/nsp3350T350NaCtaAt88AY.350.001864
ORF1ab/nsp3350T350IaCtaTt88AY.420.000322
ORF1ab/nsp3350T350IaCtaTt88AY.9.20.000294
ORF1ab/nsp3350T350IaCtaTt88AY.98.10.000387
ORF1ab/nsp3350T350IaCtaTt88B.1.1.3170.003294
ORF1ab/nsp3350T350IaCtaTt88B.1.1.3480.006369
ORF1ab/nsp3350T350IaCtaTt88B.1.2210.000568
ORF1ab/nsp3350T350IaCtaTt88B.1.36.80.008
ORF1ab/nsp3350T350TacTacC78B.1.617.20.000026
ORF1ab/nsp3350T350TacTacA18B.1.617.20.000004
ORF1ab/nsp3350T350IaCtaTt88P.1.140.000382
ORF1ab/nsp3350T350IaCtaTt77A0.002709
ORF1ab/nsp3350T350IaCtaTt77AY.1170.000592
ORF1ab/nsp3350T350IaCtaTt77AY.450.000852
ORF1ab/nsp3350T350IaCtaTt77AY.540.000667
ORF1ab/nsp3350T350IaCtaTt77AY.75.10.001262
ORF1ab/nsp3350T350IaCtaTt77AY.920.002011
ORF1ab/nsp3350T350IaCtaTt77AY.940.003099
ORF1ab/nsp3350T350NaCtaAt77B.10.000064
ORF1ab/nsp3350T350IaCtaTt77B.1.1.2140.000388
ORF1ab/nsp3350T350IaCtaTt77B.1.1.2650.022082
ORF1ab/nsp3350T350IaCtaTt77B.1.1060.21875
ORF1ab/nsp3350T350IaCtaTt77B.1.2360.014374
ORF1ab/nsp3350T350IaCtaTt77B.1.2580.000466
ORF1ab/nsp3350T350IaCtaTt77B.1.360.001021
ORF1ab/nsp3350T350IaCtaTt77C.370.000812
ORF1ab/nsp3350T350TacTacC57P.10.000079
ORF1ab/nsp3350T350TacTacG27P.10.000032
ORF1ab/nsp3350T350IaCtaTt77P.1.70.002235
ORF1ab/nsp3350T350IaCtaTt360.166667
ORF1ab/nsp3350T350IaCTaTA260.111111
ORF1ab/nsp3350T350IaCTaTC160.055556
ORF1ab/nsp3350T350NaCtaAt66AY.1030.000037
ORF1ab/nsp3350T350IaCtaTt66AY.1110.001099
ORF1ab/nsp3350T350IaCtaTt66AY.1200.000223
ORF1ab/nsp3350T350IaCtaTt66AY.46.60.000433
ORF1ab/nsp3350T350AActGct66AY.630.002321
ORF1ab/nsp3350T350IaCtaTt66AY.700.001251
ORF1ab/nsp3350T350delACT---66B.10.000055
ORF1ab/nsp3350T350TacTacC36B.1.10.000054
ORF1ab/nsp3350T350TacTacA36B.1.10.000054
ORF1ab/nsp3350T350IaCtaTt66B.1.4980.122449
ORF1ab/nsp3350T350IaCtaTt66B.1.5170.002562
ORF1ab/nsp3350T350IaCtaTt66B.1.5960.000523
ORF1ab/nsp3350T350SaCtaGt250.111111
ORF1ab/nsp3350T350RACtCGt250.111111
ORF1ab/nsp3350T350RaCTaGG250.111111
ORF1ab/nsp3350T350RaCTaGA150.055556
ORF1ab/nsp3350T350SAcTTcA150.055556
ORF1ab/nsp3350T350SAcTTcC150.055556
ORF1ab/nsp3350T350SActTct150.055556
ORF1ab/nsp3350T350YACtTAt35All0.000001
ORF1ab/nsp3350T350RaCTaGG25All0
ORF1ab/nsp3350T350YACTTAC25All0
ORF1ab/nsp3350T350RACtCGt25All0
ORF1ab/nsp3350T350RaCTaGA15All0
ORF1ab/nsp3350T350TacTacC55AY.1030.000031
ORF1ab/nsp3350T350IaCtaTt55AY.39.10.000198
ORF1ab/nsp3350T350NaCtaAt55AY.430.000022
ORF1ab/nsp3350T350AActGct45AY.440.000024
ORF1ab/nsp3350T350AAcTGcC15AY.440.000006
ORF1ab/nsp3350T350NaCtaAt55AY.930.001365
ORF1ab/nsp3350T350IaCtaTt55B0.000639
ORF1ab/nsp3350T350NaCtaAt45B.1.10.000073
ORF1ab/nsp3350T350NaCTaAC15B.1.10.000018
ORF1ab/nsp3350T350NaCtaAt55B.1.1.3480.003981
ORF1ab/nsp3350T350delACT---55B.1.1.70.000004
ORF1ab/nsp3350T350IaCtaTt55B.1.2340.00066
ORF1ab/nsp3350T350IaCtaTt55B.1.3240.008026
ORF1ab/nsp3350T350IaCtaTt55B.1.36.290.002587
ORF1ab/nsp3350T350IaCtaTt55B.1.4690.018051
ORF1ab/nsp3350T350IaCtaTt55B.1.6090.002397
ORF1ab/nsp3350T350IaCtaTt55P.1.20.00578
ORF1ab/nsp3350T350IaCtaTt55Q.10.000632
ORF1ab/nsp3350T350IaCtaTt55Q.80.000825
ORF1ab/nsp3350T350GACtGGt340.166667
ORF1ab/nsp3350T350GACTGGA140.055556
ORF1ab/nsp3350T350GACtGGt34All0.000001
ORF1ab/nsp3350T350FACTTTC24All0
ORF1ab/nsp3350T350FACtTTt24All0
ORF1ab/nsp3350T350GACTGGA14All0
ORF1ab/nsp3350T350AActGct34AY.1020.00008
ORF1ab/nsp3350T350AAcTGcA14AY.1020.000027
ORF1ab/nsp3350T350IaCtaTt44AY.1060.00134
ORF1ab/nsp3350T350IaCtaTt44AY.160.001519
ORF1ab/nsp3350T350IaCtaTt44AY.270.000259
ORF1ab/nsp3350T350IaCtaTt44AY.380.001997
ORF1ab/nsp3350T350IaCtaTt44AY.710.0019
ORF1ab/nsp3350T350IaCtaTt44AY.730.002661
ORF1ab/nsp3350T350IaCtaTt44AY.980.000316
ORF1ab/nsp3350T350IaCtaTt44B.1.1.3060.001754
ORF1ab/nsp3350T350IaCtaTt44B.1.1.3180.001207
ORF1ab/nsp3350T350IaCtaTt44B.1.1.630.001543
ORF1ab/nsp3350T350IaCtaTt44B.1.3670.00317
ORF1ab/nsp3350T350TacTacC44B.1.6230.002146
ORF1ab/nsp3350T350IaCtaTt44C.10.009569
ORF1ab/nsp3350T350TacTacA230.111111
ORF1ab/nsp3350T350TacTacC130.055556
ORF1ab/nsp3350T350delACT---33AY.40.000005
ORF1ab/nsp3350T350AActGct33AY.430.000013
ORF1ab/nsp3350T350NaCtaAt33AY.440.000018
ORF1ab/nsp3350T350IaCtaTt33AY.5.40.00083
ORF1ab/nsp3350T350IaCtaTt33AY.590.001589
ORF1ab/nsp3350T350IaCtaTt33AY.9.10.000251
ORF1ab/nsp3350T350IaCtaTt33B.1.1.10.00098
ORF1ab/nsp3350T350IaCtaTt33B.1.1.2160.002671
ORF1ab/nsp3350T350IaCtaTt33B.1.1.2220.000612
ORF1ab/nsp3350T350IaCtaTt33B.1.1280.001906
ORF1ab/nsp3350T350IaCtaTt33B.1.160.290.012658
ORF1ab/nsp3350T350IaCtaTt33B.1.177.230.009709
ORF1ab/nsp3350T350NaCtaAt33B.1.20.000026
ORF1ab/nsp3350T350IaCtaTt33B.1.2220.005076
ORF1ab/nsp3350T350IaCtaTt33B.1.2410.002435
ORF1ab/nsp3350T350IaCtaTt33B.1.258.170.000312
ORF1ab/nsp3350T350IaCtaTt33B.1.258.30.005025
ORF1ab/nsp3350T350IaCtaTt33B.1.2600.010033
ORF1ab/nsp3350T350IaCtaTt33B.1.3360.007317
ORF1ab/nsp3350T350IaCtaTt33B.1.36.180.001261
ORF1ab/nsp3350T350IaCtaTt33B.1.415.10.022727
ORF1ab/nsp3350T350IaCtaTt33B.1.4260.003027
ORF1ab/nsp3350T350IaCtaTt33B.1.438.10.000322
ORF1ab/nsp3350T350AActGct33B.1.5260.000071
ORF1ab/nsp3350T350IaCtaTt33B.1.5750.00091
ORF1ab/nsp3350T350delACT---33B.1.617.20.000011
ORF1ab/nsp3350T350delACT---33B.1.6210.000266
ORF1ab/nsp3350T350delACT---33P.1.140.000143
ORF1ab/nsp3350T350IaCtaTt33Q.30.000435
ORF1ab/nsp3350T350WACTTGG220.111111
ORF1ab/nsp3350T350delACT---220.111111
ORF1ab/nsp3350T350VACTGTA120.055556
ORF1ab/nsp3350T350NaCtaAt120.055556
ORF1ab/nsp3350T350AActGct120.055556
ORF1ab/nsp3350T350VACtGTt120.055556
ORF1ab/nsp3350T350FACTTTC120.055556
ORF1ab/nsp3350T350NaCTaAC120.055556
ORF1ab/nsp3350T350FACtTTt120.055556
ORF1ab/nsp3350T350YACTTAC120.055556
ORF1ab/nsp3350T350YACtTAt120.055556
ORF1ab/nsp3350T350AAcTGcA120.055556
ORF1ab/nsp3350T350TacTacC22A0.000774
ORF1ab/nsp3350T350IaCtaTt22A.20.001324
ORF1ab/nsp3350T350WACTTGG22All0
ORF1ab/nsp3350T350EACTGAA12All0
ORF1ab/nsp3350T350EACTGAG12All0
ORF1ab/nsp3350T350DACtGAt12All0
ORF1ab/nsp3350T350DACTGAC12All0
ORF1ab/nsp3350T350VACtGTt12AY.1020.000027
ORF1ab/nsp3350T350TacTacC12AY.1020.000027
ORF1ab/nsp3350T350TacTacA12AY.1020.000027
ORF1ab/nsp3350T350VACTGTA12AY.1020.000027
ORF1ab/nsp3350T350IaCtaTt22AY.1040.003968
ORF1ab/nsp3350T350IaCtaTt22AY.1160.000574
ORF1ab/nsp3350T350TacTacC22AY.16.10.00094
ORF1ab/nsp3350T350IaCtaTt22AY.240.000862
ORF1ab/nsp3350T350NaCtaAt22AY.250.000012
ORF1ab/nsp3350T350TacTacC12AY.30.00001
ORF1ab/nsp3350T350TacTacG12AY.30.00001
ORF1ab/nsp3350T350IaCtaTt22AY.3.10.000171
ORF1ab/nsp3350T350IaCtaTt22AY.300.000791
ORF1ab/nsp3350T350IaCtaTt22AY.34.10.00102
ORF1ab/nsp3350T350AActGct22AY.4.20.000043
ORF1ab/nsp3350T350IaCtaTt22AY.4.50.000215
ORF1ab/nsp3350T350delACT---22AY.430.000009
ORF1ab/nsp3350T350VACTGTA22AY.430.000009
ORF1ab/nsp3350T350VACTGTG12AY.46.60.000072
ORF1ab/nsp3350T350VACTGTA12AY.46.60.000072
ORF1ab/nsp3350T350TacTacC22AY.470.000062
ORF1ab/nsp3350T350TacTacC22AY.50.000041
ORF1ab/nsp3350T350IaCtaTt22AY.550.001835
ORF1ab/nsp3350T350TacTacC22AY.650.001066
ORF1ab/nsp3350T350TacTacC22AY.75.10.000361
ORF1ab/nsp3350T350IaCtaTt22AY.770.002255
ORF1ab/nsp3350T350AActGct22AY.770.002255
ORF1ab/nsp3350T350IaCtaTt22AY.840.000875
ORF1ab/nsp3350T350TacTacC22AY.980.000158
ORF1ab/nsp3350T350TacTacG22AY.99.20.000184
ORF1ab/nsp3350T350del1aCTaT-12B.10.000009
ORF1ab/nsp3350T350del1AcT-cN12B.10.000009
ORF1ab/nsp3350T350EACTGAG12B.1.10.000018
ORF1ab/nsp3350T350YACTTAC12B.1.10.000018
ORF1ab/nsp3350T350YACtTAt12B.1.10.000018
ORF1ab/nsp3350T350SActTct12B.1.10.000018
ORF1ab/nsp3350T350EACTGAA12B.1.10.000018
ORF1ab/nsp3350T350SAcTTcC12B.1.10.000018
ORF1ab/nsp3350T350IaCtaTt22B.1.1.1680.052632
ORF1ab/nsp3350T350IaCtaTt22B.1.1.1700.002494
ORF1ab/nsp3350T350NaCtaAt22B.1.1.2140.000111
ORF1ab/nsp3350T350IaCtaTt22B.1.1.280.000622
ORF1ab/nsp3350T350IaCtaTt22B.1.1.3260.003521
ORF1ab/nsp3350T350IaCtaTt22B.1.1.330.000842
ORF1ab/nsp3350T350IaCtaTt22B.1.1.3690.000892
ORF1ab/nsp3350T350IaCtaTt22B.1.1.370.000386
ORF1ab/nsp3350T350IaCtaTt22B.1.1.3970.004505
ORF1ab/nsp3350T350IaCtaTt22B.1.1.4130.013793
ORF1ab/nsp3350T350TacTacC12B.1.1.5190.00004
ORF1ab/nsp3350T350TacTacG12B.1.1.5190.00004
ORF1ab/nsp3350T350SaCtaGt22B.1.1.70.000002
ORF1ab/nsp3350T350IaCtaTt22B.1.110.30.001437
ORF1ab/nsp3350T350IaCtaTt22B.1.1110.00235
ORF1ab/nsp3350T350TacTacA22B.1.1110.00235
ORF1ab/nsp3350T350IaCtaTt22B.1.1260.002551
ORF1ab/nsp3350T350TacTacA22B.1.1490.006849
ORF1ab/nsp3350T350TacTacA22B.1.1770.000026
ORF1ab/nsp3350T350IaCtaTt22B.1.177.170.001642
ORF1ab/nsp3350T350IaCtaTt22B.1.177.210.000153
ORF1ab/nsp3350T350IaCtaTt22B.1.177.350.001382
ORF1ab/nsp3350T350IaCtaTt22B.1.177.410.005
ORF1ab/nsp3350T350IaCtaTt22B.1.177.600.000437
ORF1ab/nsp3350T350IaCtaTt22B.1.177.70.00033
ORF1ab/nsp3350T350NaCtaAt22B.1.177.750.002081
ORF1ab/nsp3350T350IaCtaTt22B.1.177.810.000379
ORF1ab/nsp3350T350TacTacC22B.1.20.000018
ORF1ab/nsp3350T350IaCtaTt22B.1.220.002635
ORF1ab/nsp3350T350AActGct22B.1.2580.000133
ORF1ab/nsp3350T350IaCtaTt22B.1.3110.000549
ORF1ab/nsp3350T350IaCtaTt22B.1.4700.002809
ORF1ab/nsp3350T350IaCtaTt22B.1.4800.004975
ORF1ab/nsp3350T350TacTacG22B.1.5260.000047
ORF1ab/nsp3350T350IaCtaTt22B.1.5330.019231
ORF1ab/nsp3350T350IaCtaTt22B.1.5640.000852
ORF1ab/nsp3350T350delACT---22B.1.5960.000174
ORF1ab/nsp3350T350IaCtaTt22B.1.9.40.01227
ORF1ab/nsp3350T350IaCtaTt22B.30.001661
ORF1ab/nsp3350T350IaCtaTt22C.36.30.001134
ORF1ab/nsp3350T350IaCtaTt22C.37.10.005236
ORF1ab/nsp3350T350AActGct22P.10.000032
ORF1ab/nsp3350T350IaCtaTt22P.1.130.001797
ORF1ab/nsp3350T350IaCtaTt22P.1.170.000324
ORF1ab/nsp3350T350SActTct22P.1.170.000324
ORF1ab/nsp3350T350PActCct12P.1.20.001156
ORF1ab/nsp3350T350PAcTCcC12P.1.20.001156
ORF1ab/nsp3350T350IaCtaTt22R.10.00018
ORF1ab/nsp3350T350KaCTaAA110.055556
ORF1ab/nsp3350T350LACTTTA110.055556
ORF1ab/nsp3350T350XACTTAA110.055556
ORF1ab/nsp3350T350TacTacA11A.20.000662
ORF1ab/nsp3350T350IaCtaTt11A.2.20.001689
ORF1ab/nsp3350T350IaCtaTt11A.2.40.003367
ORF1ab/nsp3350T350AActGct11A.2.50.000499
ORF1ab/nsp3350T350IaCtaTt11A.2.50.000499
ORF1ab/nsp3350T350IaCtaTt11A.2.5.10.004808
ORF1ab/nsp3350T350FACTTTC11A.23.10.000704
ORF1ab/nsp3350T350IaCtaTt11A.30.002096
ORF1ab/nsp3350T350NaCtaAt11AL.10.012987
ORF1ab/nsp3350T350KaCTaAA11All0
ORF1ab/nsp3350T350LACTTTA11All0
ORF1ab/nsp3350T350XACTTAA11All0
ORF1ab/nsp3350T350HACtCAt11All0
ORF1ab/nsp3350T350VACtGTt11AU.30.00211
ORF1ab/nsp3350T350SaCtaGt11AY.1020.000027
ORF1ab/nsp3350T350IaCtaTt11AY.1080.001103
ORF1ab/nsp3350T350NaCtaAt11AY.1080.001103
ORF1ab/nsp3350T350NaCtaAt11AY.1100.000113
ORF1ab/nsp3350T350TacTacA11AY.1100.000113
ORF1ab/nsp3350T350delACT---11AY.1130.000142
ORF1ab/nsp3350T350NaCtaAt11AY.1180.000063
ORF1ab/nsp3350T350delACT---11AY.1190.000035
ORF1ab/nsp3350T350TacTacA11AY.1200.000037
ORF1ab/nsp3350T350IaCtaTt11AY.120.2.10.000498
ORF1ab/nsp3350T350IaCtaTt11AY.140.000088
ORF1ab/nsp3350T350AActGct11AY.160.00038
ORF1ab/nsp3350T350NaCtaAt11AY.16.10.00047
ORF1ab/nsp3350T350IaCtaTt11AY.190.00114
ORF1ab/nsp3350T350delACT---11AY.230.00007
ORF1ab/nsp3350T350AActGct11AY.250.000006
ORF1ab/nsp3350T350delACT---11AY.260.000028
ORF1ab/nsp3350T350AActGct11AY.290.000016
ORF1ab/nsp3350T350IaCtaTt11AY.29.10.000221
ORF1ab/nsp3350T350SaCtaGt11AY.300.000396
ORF1ab/nsp3350T350TacTacC11AY.320.000532
ORF1ab/nsp3350T350AActGct11AY.350.000233
ORF1ab/nsp3350T350IaCtaTt11AY.370.000316
ORF1ab/nsp3350T350NaCtaAt11AY.390.000025
ORF1ab/nsp3350T350TacTacA11AY.4.30.000842
ORF1ab/nsp3350T350delACT---11AY.4.50.000107
ORF1ab/nsp3350T350IaCtaTt11AY.400.000964
ORF1ab/nsp3350T350IaCtaTt11AY.410.000294
ORF1ab/nsp3350T350AActGct11AY.420.00004
ORF1ab/nsp3350T350del1acTac-11AY.440.000006
ORF1ab/nsp3350T350delACT---11AY.440.000006
ORF1ab/nsp3350T350TacTacA11AY.460.000104
ORF1ab/nsp3350T350TacTacA11AY.46.30.000934
ORF1ab/nsp3350T350NaCtaAt11AY.46.50.000198
ORF1ab/nsp3350T350IaCtaTt11AY.480.000465
ORF1ab/nsp3350T350IaCtaTt11AY.5.30.000337
ORF1ab/nsp3350T350IaCtaTt11AY.560.001605
ORF1ab/nsp3350T350IaCtaTt11AY.600.000938
ORF1ab/nsp3350T350IaCtaTt11AY.650.000533
ORF1ab/nsp3350T350delACT---11AY.670.000464
ORF1ab/nsp3350T350IaCtaTt11AY.680.000274
ORF1ab/nsp3350T350AActGct11AY.70.000196
ORF1ab/nsp3350T350IaCtaTt11AY.7.10.000113
ORF1ab/nsp3350T350IaCtaTt11AY.7.20.000559
ORF1ab/nsp3350T350TacTacG11AY.700.000209
ORF1ab/nsp3350T350IaCtaTt11AY.740.000116
ORF1ab/nsp3350T350TacTacC11AY.750.000056
ORF1ab/nsp3350T350IaCtaTt11AY.790.001211
ORF1ab/nsp3350T350IaCtaTt11AY.80.000606
ORF1ab/nsp3350T350IaCtaTt11AY.820.001357
ORF1ab/nsp3350T350delACT---11AY.840.000437
ORF1ab/nsp3350T350IaCtaTt11AY.850.000427
ORF1ab/nsp3350T350IaCtaTt11AY.870.000833
ORF1ab/nsp3350T350TacTacG11AY.9.10.000084
ORF1ab/nsp3350T350DACTGAC11AY.9.20.000037
ORF1ab/nsp3350T350TacTacG11AY.9.20.000037
ORF1ab/nsp3350T350IaCtaTt11AY.910.00073
ORF1ab/nsp3350T350AActGct11AY.920.000287
ORF1ab/nsp3350T350IaCtaTt11AY.930.000273
ORF1ab/nsp3350T350IaCtaTt11AY.950.000761
ORF1ab/nsp3350T350TacTacA11AY.98.10.000048
ORF1ab/nsp3350T350delACT---11AY.990.001049
ORF1ab/nsp3350T350NaCtaAt11AY.99.20.000092
ORF1ab/nsp3350T350FACtTTt11B0.000128
ORF1ab/nsp3350T350TacTacC11B0.000128
ORF1ab/nsp3350T350PActCct11B.10.000009
ORF1ab/nsp3350T350AActGct11B.1.10.000018
ORF1ab/nsp3350T350DACtGAt11B.1.10.000018
ORF1ab/nsp3350T350delACT---11B.1.10.000018
ORF1ab/nsp3350T350IaCtaTt11B.1.1.1380.006061
ORF1ab/nsp3350T350IaCtaTt11B.1.1.1480.008772
ORF1ab/nsp3350T350TacTacG11B.1.1.1530.001095
ORF1ab/nsp3350T350IaCtaTt11B.1.1.1530.001095
ORF1ab/nsp3350T350IaCtaTt11B.1.1.1580.012195
ORF1ab/nsp3350T350IaCtaTt11B.1.1.1610.003534
ORF1ab/nsp3350T350IaCtaTt11B.1.1.1840.058824
ORF1ab/nsp3350T350IaCtaTt11B.1.1.1890.001513
ORF1ab/nsp3350T350IaCtaTt11B.1.1.2360.006897
ORF1ab/nsp3350T350AActGct11B.1.1.250.000569
ORF1ab/nsp3350T350IaCtaTt11B.1.1.2540.011236
ORF1ab/nsp3350T350IaCtaTt11B.1.1.2550.00303
ORF1ab/nsp3350T350IaCtaTt11B.1.1.2790.001121
ORF1ab/nsp3350T350IaCtaTt11B.1.1.3020.002075
ORF1ab/nsp3350T350IaCtaTt11B.1.1.3050.003861
ORF1ab/nsp3350T350delACT---11B.1.1.3060.000438
ORF1ab/nsp3350T350NaCtaAt11B.1.1.3110.000358
ORF1ab/nsp3350T350TacTacC11B.1.1.3120.001912
ORF1ab/nsp3350T350delACT---11B.1.1.330.000421
ORF1ab/nsp3350T350IaCtaTt11B.1.1.3370.003597
ORF1ab/nsp3350T350delACT---11B.1.1.3480.000796
ORF1ab/nsp3350T350IaCtaTt11B.1.1.3540.004386
ORF1ab/nsp3350T350IaCtaTt11B.1.1.3590.027778
ORF1ab/nsp3350T350AActGct11B.1.1.370.000193
ORF1ab/nsp3350T350IaCtaTt11B.1.1.3700.012658
ORF1ab/nsp3350T350IaCtaTt11B.1.1.3710.010417
ORF1ab/nsp3350T350IaCtaTt11B.1.1.3720.000689
ORF1ab/nsp3350T350IaCtaTt11B.1.1.3730.02381
ORF1ab/nsp3350T350IaCtaTt11B.1.1.390.00051
ORF1ab/nsp3350T350IaCtaTt11B.1.1.400.034483
ORF1ab/nsp3350T350IaCtaTt11B.1.1.410.006329
ORF1ab/nsp3350T350IaCtaTt11B.1.1.4110.014706
ORF1ab/nsp3350T350IaCtaTt11B.1.1.4290.004608
ORF1ab/nsp3350T350IaCtaTt11B.1.1.4480.002033
ORF1ab/nsp3350T350IaCtaTt11B.1.1.4850.016667
ORF1ab/nsp3350T350NaCtaAt11B.1.1.4850.016667
ORF1ab/nsp3350T350IaCtaTt11B.1.1.4860.001577
ORF1ab/nsp3350T350IaCtaTt11B.1.1.510.001718
ORF1ab/nsp3350T350IaCtaTt11B.1.1.5250.005464
ORF1ab/nsp3350T350IaCtaTt11B.1.1.610.008772
ORF1ab/nsp3350T350YACtTAt11B.1.1.830.00271
ORF1ab/nsp3350T350IaCtaTt11B.1.1040.00369
ORF1ab/nsp3350T350delACT---11B.1.110.30.000718
ORF1ab/nsp3350T350IaCtaTt11B.1.1470.000756
ORF1ab/nsp3350T350delACT---11B.1.1600.000031
ORF1ab/nsp3350T350IaCtaTt11B.1.160.70.002079
ORF1ab/nsp3350T350NaCtaAt11B.1.1770.000013
ORF1ab/nsp3350T350IaCtaTt11B.1.177.120.000152
ORF1ab/nsp3350T350IaCtaTt11B.1.177.180.00116
ORF1ab/nsp3350T350IaCtaTt11B.1.177.40.000211
ORF1ab/nsp3350T350IaCtaTt11B.1.177.420.000894
ORF1ab/nsp3350T350IaCtaTt11B.1.177.440.000519
ORF1ab/nsp3350T350IaCtaTt11B.1.177.500.004695
ORF1ab/nsp3350T350del1acTac-11B.1.177.730.000566
ORF1ab/nsp3350T350IaCtaTt11B.1.177.750.001041
ORF1ab/nsp3350T350TacTacA11B.1.177.790.002342
ORF1ab/nsp3350T350IaCtaTt11B.1.177.90.001332
ORF1ab/nsp3350T350del1acTac-11B.1.20.000009
ORF1ab/nsp3350T350delACT---11B.1.20.000009
ORF1ab/nsp3350T350AActGct11B.1.20.000009
ORF1ab/nsp3350T350IaCtaTt11B.1.2060.000816
ORF1ab/nsp3350T350IaCtaTt11B.1.214.20.0006
ORF1ab/nsp3350T350delACT---11B.1.2180.005155
ORF1ab/nsp3350T350AActGct11B.1.2210.000071
ORF1ab/nsp3350T350IaCtaTt11B.1.2230.002778
ORF1ab/nsp3350T350TacTacC11B.1.2320.000537
ORF1ab/nsp3350T350IaCtaTt11B.1.2400.000216
ORF1ab/nsp3350T350TacTacC11B.1.2400.000216
ORF1ab/nsp3350T350IaCtaTt11B.1.258.110.000396
ORF1ab/nsp3350T350HACtCAt11B.1.258.170.000104
ORF1ab/nsp3350T350IaCtaTt11B.1.3020.013333
ORF1ab/nsp3350T350IaCtaTt11B.1.3050.002151
ORF1ab/nsp3350T350AActGct11B.1.3240.001605
ORF1ab/nsp3350T350IaCtaTt11B.1.3370.005587
ORF1ab/nsp3350T350AActGct11B.1.3510.00003
ORF1ab/nsp3350T350IaCtaTt11B.1.351.50.0006
ORF1ab/nsp3350T350TacTacC11B.1.3560.001727
ORF1ab/nsp3350T350del1Act-ct11B.1.360.000146
ORF1ab/nsp3350T350AActGct11B.1.360.000146
ORF1ab/nsp3350T350delACT---11B.1.360.000146
ORF1ab/nsp3350T350IaCtaTt11B.1.36.100.004785
ORF1ab/nsp3350T350IaCtaTt11B.1.36.160.001425
ORF1ab/nsp3350T350IaCtaTt11B.1.36.170.000494
ORF1ab/nsp3350T350IaCtaTt11B.1.36.270.000763
ORF1ab/nsp3350T350TacTacG11B.1.3750.00082
ORF1ab/nsp3350T350IaCtaTt11B.1.3970.004854
ORF1ab/nsp3350T350TacTacC11B.1.4160.001269
ORF1ab/nsp3350T350IaCtaTt11B.1.4160.001269
ORF1ab/nsp3350T350IaCtaTt11B.1.4240.008065
ORF1ab/nsp3350T350TacTacC11B.1.4270.00005
ORF1ab/nsp3350T350delACT---11B.1.4290.000024
ORF1ab/nsp3350T350IaCtaTt11B.1.4600.017857
ORF1ab/nsp3350T350IaCtaTt11B.1.4650.003802
ORF1ab/nsp3350T350TacTacC11B.1.4700.001404
ORF1ab/nsp3350T350AActGct11B.1.4970.000315
ORF1ab/nsp3350T350NaCtaAt11B.1.4970.000315
ORF1ab/nsp3350T350IaCtaTt11B.1.4990.00105
ORF1ab/nsp3350T350NaCtaAt11B.1.5250.000113
ORF1ab/nsp3350T350del1acTac-11B.1.5260.000024
ORF1ab/nsp3350T350IaCtaTt11B.1.5430.01
ORF1ab/nsp3350T350IaCtaTt11B.1.5460.003704
ORF1ab/nsp3350T350IaCtaTt11B.1.5610.000397
ORF1ab/nsp3350T350AActGct11B.1.5610.000397
ORF1ab/nsp3350T350TacTacA11B.1.5750.000303
ORF1ab/nsp3350T350IaCtaTt11B.1.575.10.002439
ORF1ab/nsp3350T350del1acTac-11B.1.5950.000261
ORF1ab/nsp3350T350IaCtaTt11B.1.5990.00365
ORF1ab/nsp3350T350IaCtaTt11B.1.6030.010638
ORF1ab/nsp3350T350IaCtaTt11B.1.6190.000871
ORF1ab/nsp3350T350TacTacC11B.1.6210.000089
ORF1ab/nsp3350T350delACT---11B.1.621.10.000506
ORF1ab/nsp3350T350NaCtaAt11B.1.621.10.000506
ORF1ab/nsp3350T350AActGct11B.1.6230.000536
ORF1ab/nsp3350T350IaCtaTt11B.1.6230.000536
ORF1ab/nsp3350T350IaCtaTt11B.1.6250.002353
ORF1ab/nsp3350T350delACT---11B.1.6270.00202
ORF1ab/nsp3350T350IaCtaTt11B.1.6270.00202
ORF1ab/nsp3350T350TacTacC11B.1.6280.000352
ORF1ab/nsp3350T350IaCtaTt11B.1.6310.003367
ORF1ab/nsp3350T350IaCtaTt11B.1.6340.003425
ORF1ab/nsp3350T350IaCtaTt11B.100.008264
ORF1ab/nsp3350T350IaCtaTt11B.340.013699
ORF1ab/nsp3350T350delACT---11B.570.015152
ORF1ab/nsp3350T350IaCtaTt11B.60.00091
ORF1ab/nsp3350T350IaCtaTt11C.130.025641
ORF1ab/nsp3350T350IaCtaTt11C.140.004329
ORF1ab/nsp3350T350IaCtaTt11C.360.000911
ORF1ab/nsp3350T350IaCtaTt11C.380.008065
ORF1ab/nsp3350T350IaCtaTt11C.390.018868
ORF1ab/nsp3350T350IaCtaTt11C.40.01
ORF1ab/nsp3350T350SActTct11D.20.000075
ORF1ab/nsp3350T350IaCtaTt11N.30.005814
ORF1ab/nsp3350T350delACT---11N.60.007092
ORF1ab/nsp3350T350IaCtaTt11N.60.007092
ORF1ab/nsp3350T350NaCtaAt11P.10.000016
ORF1ab/nsp3350T350del1acTac-11P.1.10.000318
ORF1ab/nsp3350T350del1AcT-cN11P.1.150.000232
ORF1ab/nsp3350T350IaCtaTt11P.1.150.000232
ORF1ab/nsp3350T350SActTct11P.1.20.001156
ORF1ab/nsp3350T350TacTacC11P.1.20.001156
ORF1ab/nsp3350T350delACT---11P.1.70.000319
ORF1ab/nsp3350T350IaCtaTt11P.20.000187
ORF1ab/nsp3350T350SActTct11P.20.000187
ORF1ab/nsp3350T350AActGct11P.20.000187
ORF1ab/nsp3350T350IaCtaTt11P.30.001595
ORF1ab/nsp3350T350AActGct11Q.10.000126
ORF1ab/nsp3350T350TacTacC11R.10.00009