CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF1ab/nsp3 : CodonNum = 342

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF1ab/nsp3342H342YH1160YnonsynCatTat702870270.9998583743-3745
ORF1ab/nsp3342H342YH1160YnonsynCaTTaC702810.0001422883743-3745
ORF1ab/nsp3342H342HH1160HsyncaTcaC1644164413743-3745
ORF1ab/nsp3342H342RH1160RnonsyncAtcGt2031990.9802963743-3745
ORF1ab/nsp3342H342RH1160RnonsyncATcGC20320.009852223743-3745
ORF1ab/nsp3342H342RH1160RnonsynCATAGG20310.004926113743-3745
ORF1ab/nsp3342H342RH1160RnonsyncATcGG20310.004926113743-3745
ORF1ab/nsp3342H342delH1160deldelCAT---10310313743-3745
ORF1ab/nsp3342H342QH1160QnonsyncaTcaG64450.7031253743-3745
ORF1ab/nsp3342H342QH1160QnonsyncaTcaA64190.2968753743-3745
ORF1ab/nsp3342H342LH1160LnonsyncAtcTt38150.3947373743-3745
ORF1ab/nsp3342H342LH1160LnonsyncATcTG38140.3684213743-3745
ORF1ab/nsp3342H342LH1160LnonsyncATcTC3870.1842113743-3745
ORF1ab/nsp3342H342LH1160LnonsyncATcTA3820.05263163743-3745
ORF1ab/nsp3342H342NH1160NnonsynCatAat17150.8823533743-3745
ORF1ab/nsp3342H342PH1160PnonsyncAtcCt17130.7647063743-3745
ORF1ab/nsp3342H342PH1160PnonsyncATcCA1720.1176473743-3745
ORF1ab/nsp3342H342NH1160NnonsynCaTAaC1720.1176473743-3745
ORF1ab/nsp3342H342PH1160PnonsyncATcCC1720.1176473743-3745
ORF1ab/nsp3342H342DH1160DnonsynCatGat650.8333333743-3745
ORF1ab/nsp3342H342SH1160SnonsynCATAGC630.53743-3745
ORF1ab/nsp3342H342SH1160SnonsynCAtAGt620.3333333743-3745
ORF1ab/nsp3342H342SH1160SnonsynCAtTCt610.1666673743-3745
ORF1ab/nsp3342H342DH1160DnonsynCaTGaC610.1666673743-3745
ORF1ab/nsp3342H342GH1160GnonsynCATGGG530.63743-3745
ORF1ab/nsp3342H342GH1160GnonsynCATGGC510.23743-3745
ORF1ab/nsp3342H342GH1160GnonsynCAtGGt510.23743-3745
ORF1ab/nsp3342H342CH1160CnonsynCAtTGt4413743-3745
ORF1ab/nsp3342H342EH1160EnonsynCaTGaG3313743-3745
ORF1ab/nsp3342H342TH1160TnonsynCAtACt320.6666673743-3745
ORF1ab/nsp3342H342TH1160TnonsynCATACC310.3333333743-3745
ORF1ab/nsp3342H342MH1160MnonsynCATATG2213743-3745
ORF1ab/nsp3342H342del2H1160del2delcATc--1113743-3745
ORF1ab/nsp3342H342del1H1160del1delcaTca-1113743-3745
ORF1ab/nsp3342H342KH1160KnonsynCaTAaG1113743-3745
ORF1ab/nsp3342H342XH1160XnonsynCaTTaA1113743-3745
ORF1ab/nsp3342H342FH1160FnonsynCAtTTt1113743-3745
ORF1ab/nsp3342H342AH1160AnonsynCAtGCt1113743-3745

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF1ab/nsp3342H342YCatTat70277028All0.001344
ORF1ab/nsp3342H342YCaTTaC17028All0
ORF1ab/nsp3342H342YCatTat17581758B.1.1.70.001574
ORF1ab/nsp3342H342HcaTcaC16441644All0.000314
ORF1ab/nsp3342H342HcaTcaC12641264B.1.1.5190.050195
ORF1ab/nsp3342H342YCatTat861861AY.40.00134
ORF1ab/nsp3342H342YCatTat399399AY.1030.002477
ORF1ab/nsp3342H342YCatTat320320B.1.20.002818
ORF1ab/nsp3342H342YCatTat207207B.1.221.40.8625
ORF1ab/nsp3342H342RcAtcGt199203All0.000038
ORF1ab/nsp3342H342RcATcGC2203All0
ORF1ab/nsp3342H342RCATAGG1203All0
ORF1ab/nsp3342H342RcATcGG1203All0
ORF1ab/nsp3342H342YCatTat200200B.1.617.20.000753
ORF1ab/nsp3342H342YCatTat189189AV.10.954545
ORF1ab/nsp3342H342HcaTcaC181181B.1.1.4640.266568
ORF1ab/nsp3342H342YCatTat148148B.1.2340.019528
ORF1ab/nsp3342H342YCatTat130130B.1.1.3170.05352
ORF1ab/nsp3342H342YCatTat118118B.1.438.10.012657
ORF1ab/nsp3342H342YCatTat113113AY.250.00068
ORF1ab/nsp3342H342YCatTat112112B.10.001026
ORF1ab/nsp3342H342YCatTat106106AY.440.000645
ORF1ab/nsp3342H342delCAT---103103All0.00002
ORF1ab/nsp3342H342YCatTat100100P.10.001575
ORF1ab/nsp3342H342YCatTat9595AY.340.009212
ORF1ab/nsp3342H342YCatTat8686B.1.1770.001132
ORF1ab/nsp3342H342YCatTat7575AY.430.000332
ORF1ab/nsp3342H342YCatTat6868AY.30.000676
ORF1ab/nsp3342H342YCatTat6868AY.4.2.10.010131
ORF1ab/nsp3342H342QcaTcaG4564All0.000009
ORF1ab/nsp3342H342QcaTcaA1964All0.000004
ORF1ab/nsp3342H342YCatTat6363B.1.1600.001965
ORF1ab/nsp3342H342YCatTat5656B.1.5610.022231
ORF1ab/nsp3342H342YCatTat5555B.1.2210.003907
ORF1ab/nsp3342H342YCatTat5454B.1.10.00098
ORF1ab/nsp3342H342YCatTat4848B.1.3431
ORF1ab/nsp3342H342YCatTat4545B.1.5260.001058
ORF1ab/nsp3342H342YCatTat4343B.1.2580.002862
ORF1ab/nsp3342H342YCatTat4242B.1.4270.002121
ORF1ab/nsp3342H342YCatTat4242B.1.6190.036585
ORF1ab/nsp3342H342YCatTat4141AY.390.001013
ORF1ab/nsp3342H342HcaTcaC3939AY.40.000061
ORF1ab/nsp3342H342LcAtcTt1538All0.000003
ORF1ab/nsp3342H342LcATcTG1438All0.000003
ORF1ab/nsp3342H342LcATcTC738All0.000001
ORF1ab/nsp3342H342LcATcTA238All0
ORF1ab/nsp3342H342RcAtcGt3737B.1.1.4200.037223
ORF1ab/nsp3342H342RcAtcGt3737B.1.1.70.000033
ORF1ab/nsp3342H342YCatTat3434B.1.1.3770.046961
ORF1ab/nsp3342H342YCatTat3434B.1.177.120.005158
ORF1ab/nsp3342H342YCatTat3232AY.1000.001472
ORF1ab/nsp3342H342YCatTat3232B.1.1.330.013468
ORF1ab/nsp3342H342YCatTat3030Q.10.00379
ORF1ab/nsp3342H342YCatTat2728B.1.1.5190.001072
ORF1ab/nsp3342H342YCaTTaC128B.1.1.5190.00004
ORF1ab/nsp3342H342YCatTat2828B.1.4290.000659
ORF1ab/nsp3342H342YCatTat2727AY.1190.000953
ORF1ab/nsp3342H342YCatTat2727AY.4.20.000586
ORF1ab/nsp3342H342RcAtcGt2626AY.4.50.002795
ORF1ab/nsp3342H342YCatTat2626B.1.1.3060.011399
ORF1ab/nsp3342H342YCatTat2525B.1.3510.000743
ORF1ab/nsp3342H342YCatTat2323B.1.5250.002603
ORF1ab/nsp3342H342YCatTat2323B.1.6210.002036
ORF1ab/nsp3342H342LcATcTG1423P.10.000221
ORF1ab/nsp3342H342LcATcTC723P.10.00011
ORF1ab/nsp3342H342LcAtcTt223P.10.000032
ORF1ab/nsp3342H342HcaTcaC2222B.1.1.70.00002
ORF1ab/nsp3342H342YCatTat2121B.1.177.530.050239
ORF1ab/nsp3342H342YCatTat2020AY.1020.00053
ORF1ab/nsp3342H342YCatTat2020AY.270.001294
ORF1ab/nsp3342H342delCAT---1919P.10.000299
ORF1ab/nsp3342H342YCatTat1919P.1.140.000908
ORF1ab/nsp3342H342YCatTat1818AY.950.013699
ORF1ab/nsp3342H342HcaTcaC1818B.10.000165
ORF1ab/nsp3342H342YCatTat1818B.1.1.1890.027231
ORF1ab/nsp3342H342NCatAat1517All0.000003
ORF1ab/nsp3342H342PcAtcCt1317All0.000002
ORF1ab/nsp3342H342PcATcCA217All0
ORF1ab/nsp3342H342NCaTAaC217All0
ORF1ab/nsp3342H342PcATcCC217All0
ORF1ab/nsp3342H342YCatTat1717B.1.1.2140.000943
ORF1ab/nsp3342H342delCAT---1717P.1.150.00395
ORF1ab/nsp3342H342YCatTat1616B.1.177.810.003029
ORF1ab/nsp3342H342YCatTat1616B.1.3240.025682
ORF1ab/nsp3342H342HcaTcaC1515AY.430.000066
ORF1ab/nsp3342H342YCatTat1515B.1.1260.019133
ORF1ab/nsp3342H342YCatTat1515B.1.177.750.015609
ORF1ab/nsp3342H342YCatTat1414AY.330.000935
ORF1ab/nsp3342H342RcAtcGt1414AY.430.000062
ORF1ab/nsp3342H342YCatTat1414B.1.1.1760.006151
ORF1ab/nsp3342H342YCatTat1414B.1.1.3700.177215
ORF1ab/nsp3342H342YCatTat1414B.1.2430.000974
ORF1ab/nsp3342H342YCatTat1313AY.200.000505
ORF1ab/nsp3342H342YCatTat1313AY.750.000728
ORF1ab/nsp3342H342YCatTat1313AY.99.20.001198
ORF1ab/nsp3342H342YCatTat1313B.1.6270.026263
ORF1ab/nsp3342H342YCatTat1313B.1.6280.004581
ORF1ab/nsp3342H342HcaTcaC1313P.10.000205
ORF1ab/nsp3342H342YCatTat1212A.2.50.005988
ORF1ab/nsp3342H342YCatTat1212AY.1180.000752
ORF1ab/nsp3342H342YCatTat1212B0.001534
ORF1ab/nsp3342H342QcaTcaA612B.1.1.70.000005
ORF1ab/nsp3342H342QcaTcaG612B.1.1.70.000005
ORF1ab/nsp3342H342QcaTcaG1212P.10.000189
ORF1ab/nsp3342H342YCatTat1111AY.1200.000409
ORF1ab/nsp3342H342YCatTat1111AY.420.000443
ORF1ab/nsp3342H342YCatTat1111AY.46.60.000794
ORF1ab/nsp3342H342YCatTat1111AY.50.000227
ORF1ab/nsp3342H342HcaTcaC1111B.1.10.0002
ORF1ab/nsp3342H342YCatTat1111B.1.1.2840.001181
ORF1ab/nsp3342H342YCatTat1111B.1.5640.004685
ORF1ab/nsp3342H342YCatTat1111C.370.001277
ORF1ab/nsp3342H342RcAtcGt1010AY.1030.000062
ORF1ab/nsp3342H342YCatTat1010AY.1130.001424
ORF1ab/nsp3342H342YCatTat1010AY.650.00533
ORF1ab/nsp3342H342QcaTcaG710B.10.000064
ORF1ab/nsp3342H342QcaTcaA310B.10.000027
ORF1ab/nsp3342H342YCatTat1010B.1.466.20.003912
ORF1ab/nsp3342H342YCatTat1010B.1.5750.003034
ORF1ab/nsp3342H342YCatTat1010B.1.5960.000871
ORF1ab/nsp3342H342RcAtcGt1010B.1.617.20.000038
ORF1ab/nsp3342H342YCatTat1010B.1.6260.057143
ORF1ab/nsp3342H342delCAT---1010P.1.120.00484
ORF1ab/nsp3342H342YCatTat99AY.290.000142
ORF1ab/nsp3342H342YCatTat99AY.450.001095
ORF1ab/nsp3342H342YCatTat99AY.470.00028
ORF1ab/nsp3342H342YCatTat99AY.630.003482
ORF1ab/nsp3342H342YCatTat99B.1.1.3180.002716
ORF1ab/nsp3342H342HcaTcaC99B.1.2580.000599
ORF1ab/nsp3342H342YCatTat99B.1.4700.01264
ORF1ab/nsp3342H342YCatTat99B.1.6370.000658
ORF1ab/nsp3342H342YCatTat99Q.40.004093
ORF1ab/nsp3342H342YCatTat88AY.260.000226
ORF1ab/nsp3342H342YCatTat88AY.520.006515
ORF1ab/nsp3342H342RcAtcGt88AY.640.004762
ORF1ab/nsp3342H342YCatTat88AY.990.008395
ORF1ab/nsp3342H342delCAT---88B.10.000073
ORF1ab/nsp3342H342YCatTat88B.1.1.3970.018018
ORF1ab/nsp3342H342YCatTat88B.1.160.230.038647
ORF1ab/nsp3342H342YCatTat88P.1.170.001294
ORF1ab/nsp3342H342YCatTat77AY.230.000488
ORF1ab/nsp3342H342YCatTat77B.1.258.170.000728
ORF1ab/nsp3342H342HcaTcaC77B.1.617.20.000026
ORF1ab/nsp3342H342YCatTat77P.1.150.001626
ORF1ab/nsp3342H342DCatGat56All0.000001
ORF1ab/nsp3342H342SCATAGC36All0.000001
ORF1ab/nsp3342H342SCAtAGt26All0
ORF1ab/nsp3342H342SCAtTCt16All0
ORF1ab/nsp3342H342DCaTGaC16All0
ORF1ab/nsp3342H342YCatTat66AY.3.10.000512
ORF1ab/nsp3342H342HcaTcaC66AY.440.000037
ORF1ab/nsp3342H342PcAtcCt46B.10.000037
ORF1ab/nsp3342H342PcATcCA26B.10.000018
ORF1ab/nsp3342H342YCatTat66B.1.1.560.107143
ORF1ab/nsp3342H342YCatTat66B.1.4000.002574
ORF1ab/nsp3342H342YCatTat66B.1.416.10.009375
ORF1ab/nsp3342H342GCATGGG350.166667
ORF1ab/nsp3342H342RcAtcGt250.111111
ORF1ab/nsp3342H342RCATAGG150.055556
ORF1ab/nsp3342H342RcATcGG150.055556
ORF1ab/nsp3342H342GCATGGC150.055556
ORF1ab/nsp3342H342GCAtGGt150.055556
ORF1ab/nsp3342H342RcATcGC150.055556
ORF1ab/nsp3342H342YCatTat55AD.20.001095
ORF1ab/nsp3342H342GCATGGG35All0.000001
ORF1ab/nsp3342H342GCAtGGt15All0
ORF1ab/nsp3342H342GCATGGC15All0
ORF1ab/nsp3342H342RcAtcGt55AY.1020.000133
ORF1ab/nsp3342H342HcaTcaC55AY.1030.000031
ORF1ab/nsp3342H342YCatTat55AY.1160.001434
ORF1ab/nsp3342H342HcaTcaC55AY.30.00005
ORF1ab/nsp3342H342HcaTcaC55AY.390.000124
ORF1ab/nsp3342H342QcaTcaG55AY.50.000103
ORF1ab/nsp3342H342YCatTat55AY.610.000524
ORF1ab/nsp3342H342YCatTat55AY.99.10.007764
ORF1ab/nsp3342H342YCatTat55B.1.1.2220.00102
ORF1ab/nsp3342H342delCAT---55B.1.1.70.000004
ORF1ab/nsp3342H342YCatTat55B.1.177.210.000382
ORF1ab/nsp3342H342YCatTat55B.1.360.00073
ORF1ab/nsp3342H342delCAT---55B.1.617.20.000019
ORF1ab/nsp3342H342YCatTat55P.1.70.001596
ORF1ab/nsp3342H342CCAtTGt44All0.000001
ORF1ab/nsp3342H342YCatTat44AY.1170.000338
ORF1ab/nsp3342H342RcAtcGt44AY.250.000024
ORF1ab/nsp3342H342YCatTat44AY.39.10.000158
ORF1ab/nsp3342H342RcAtcGt44AY.40.000006
ORF1ab/nsp3342H342YCatTat44AY.5.10.015038
ORF1ab/nsp3342H342YCatTat44AY.550.00367
ORF1ab/nsp3342H342YCatTat44AY.60.000165
ORF1ab/nsp3342H342YCatTat44AY.90.00027
ORF1ab/nsp3342H342RcAtcGt34B.1.10.000054
ORF1ab/nsp3342H342RcATcGC14B.1.10.000018
ORF1ab/nsp3342H342YCatTat44B.1.1.250.002274
ORF1ab/nsp3342H342YCatTat44B.1.1.280.001245
ORF1ab/nsp3342H342HcaTcaC44B.1.1770.000053
ORF1ab/nsp3342H342YCatTat44B.1.177.620.004768
ORF1ab/nsp3342H342YCatTat44B.1.177.70.000659
ORF1ab/nsp3342H342YCatTat44B.1.351.30.003506
ORF1ab/nsp3342H342YCatTat44B.1.36.80.004
ORF1ab/nsp3342H342YCatTat44B.1.3890.004008
ORF1ab/nsp3342H342YCatTat44B.1.617.10.000516
ORF1ab/nsp3342H342YCatTat44Q.30.00058
ORF1ab/nsp3342H342YCatTat44Q.80.00066
ORF1ab/nsp3342H342ECaTGaG330.166667
ORF1ab/nsp3342H342LcATcTA230.111111
ORF1ab/nsp3342H342QcaTcaA230.111111
ORF1ab/nsp3342H342LcAtcTt130.055556
ORF1ab/nsp3342H342QcaTcaG130.055556
ORF1ab/nsp3342H342SCATAGC130.055556
ORF1ab/nsp3342H342SCAtAGt130.055556
ORF1ab/nsp3342H342SCAtTCt130.055556
ORF1ab/nsp3342H342NCatAat33AD.20.000657
ORF1ab/nsp3342H342ECaTGaG33All0.000001
ORF1ab/nsp3342H342TCAtACt23All0
ORF1ab/nsp3342H342TCATACC13All0
ORF1ab/nsp3342H342YCatTat33AU.20.007264
ORF1ab/nsp3342H342YCatTat33AY.350.000699
ORF1ab/nsp3342H342YCatTat33AY.460.000312
ORF1ab/nsp3342H342YCatTat33AY.46.50.000595
ORF1ab/nsp3342H342YCatTat33AY.5.40.00083
ORF1ab/nsp3342H342YCatTat33AY.680.000821
ORF1ab/nsp3342H342YCatTat33AY.75.10.000541
ORF1ab/nsp3342H342YCatTat33AY.9.20.00011
ORF1ab/nsp3342H342YCatTat33AY.920.000862
ORF1ab/nsp3342H342YCatTat33AY.980.000237
ORF1ab/nsp3342H342YCatTat33AY.98.10.000145
ORF1ab/nsp3342H342RcAtcGt33B.10.000027
ORF1ab/nsp3342H342YCatTat33B.1.1.1280.021277
ORF1ab/nsp3342H342YCatTat33B.1.1.1860.010309
ORF1ab/nsp3342H342YCatTat33B.1.1.5210.016043
ORF1ab/nsp3342H342YCatTat33B.1.1040.01107
ORF1ab/nsp3342H342YCatTat33B.1.110.30.002155
ORF1ab/nsp3342H342YCatTat33B.1.177.230.009709
ORF1ab/nsp3342H342RcAtcGt33B.1.20.000026
ORF1ab/nsp3342H342RcAtcGt33B.1.2340.000396
ORF1ab/nsp3342H342RcAtcGt33B.1.2580.0002
ORF1ab/nsp3342H342YCatTat33B.1.2650.003812
ORF1ab/nsp3342H342YCatTat33B.1.36.20.032258
ORF1ab/nsp3342H342YCatTat33B.1.36.210.006479
ORF1ab/nsp3342H342YCatTat33B.1.4710.008197
ORF1ab/nsp3342H342YCatTat33B.1.621.10.001517
ORF1ab/nsp3342H342YCatTat33D.20.000225
ORF1ab/nsp3342H342delCAT---33P.1.140.000143
ORF1ab/nsp3342H342YCatTat33P.30.004785
ORF1ab/nsp3342H342YCatTat33R.10.00027
ORF1ab/nsp3342H342delCAT---220.111111
ORF1ab/nsp3342H342NCatAat120.055556
ORF1ab/nsp3342H342NCaTAaC120.055556
ORF1ab/nsp3342H342DCatGat120.055556
ORF1ab/nsp3342H342DCaTGaC120.055556
ORF1ab/nsp3342H342YCatTat22A.210.00554
ORF1ab/nsp3342H342MCATATG22All0
ORF1ab/nsp3342H342QcaTcaG22AY.1030.000012
ORF1ab/nsp3342H342YCatTat22AY.1210.000271
ORF1ab/nsp3342H342YCatTat22AY.190.002281
ORF1ab/nsp3342H342NCatAat22AY.30.00002
ORF1ab/nsp3342H342RcAtcGt22AY.30.00002
ORF1ab/nsp3342H342YCatTat22AY.320.001065
ORF1ab/nsp3342H342YCatTat22AY.34.10.00102
ORF1ab/nsp3342H342QcaTcaA22AY.40.000003
ORF1ab/nsp3342H342delCAT---22AY.40.000003
ORF1ab/nsp3342H342YCatTat22AY.4.50.000215
ORF1ab/nsp3342H342YCatTat22AY.46.20.001271
ORF1ab/nsp3342H342YCatTat22AY.540.000191
ORF1ab/nsp3342H342HcaTcaC22AY.590.001059
ORF1ab/nsp3342H342YCatTat22AY.70.000392
ORF1ab/nsp3342H342YCatTat22AY.740.000231
ORF1ab/nsp3342H342YCatTat22AY.840.000875
ORF1ab/nsp3342H342YCatTat22AY.880.001768
ORF1ab/nsp3342H342PcAtcCt12B.1.10.000018
ORF1ab/nsp3342H342NCatAat12B.1.10.000018
ORF1ab/nsp3342H342TCATACC12B.1.10.000018
ORF1ab/nsp3342H342TCAtACt12B.1.10.000018
ORF1ab/nsp3342H342SCAtAGt12B.1.10.000018
ORF1ab/nsp3342H342PcATcCC12B.1.10.000018
ORF1ab/nsp3342H342SCATAGC12B.1.10.000018
ORF1ab/nsp3342H342NCaTAaC12B.1.10.000018
ORF1ab/nsp3342H342YCatTat22B.1.1.100.00223
ORF1ab/nsp3342H342YCatTat22B.1.1.1570.001826
ORF1ab/nsp3342H342HcaTcaC22B.1.1.1610.007067
ORF1ab/nsp3342H342HcaTcaC22B.1.1.2220.000408
ORF1ab/nsp3342H342YCatTat22B.1.1.2440.030769
ORF1ab/nsp3342H342YCatTat22B.1.1.2770.001517
ORF1ab/nsp3342H342HcaTcaC22B.1.1.3060.000877
ORF1ab/nsp3342H342YCatTat22B.1.1.3110.000716
ORF1ab/nsp3342H342YCatTat22B.1.1.3720.001377
ORF1ab/nsp3342H342RcAtcGt22B.1.1.4110.029412
ORF1ab/nsp3342H342YCatTat22B.1.1.630.000772
ORF1ab/nsp3342H342YCatTat22B.1.1430.042553
ORF1ab/nsp3342H342YCatTat22B.1.177.50.002484
ORF1ab/nsp3342H342YCatTat22B.1.177.600.000437
ORF1ab/nsp3342H342YCatTat22B.1.177.830.002963
ORF1ab/nsp3342H342YCatTat22B.1.177.870.001456
ORF1ab/nsp3342H342RcAtcGt22B.1.2100.004264
ORF1ab/nsp3342H342LcAtcTt22B.1.2340.000264
ORF1ab/nsp3342H342YCatTat22B.1.2400.000431
ORF1ab/nsp3342H342YCatTat22B.1.36.360.001204
ORF1ab/nsp3342H342QcaTcaG22B.1.4290.000047
ORF1ab/nsp3342H342QcaTcaG22B.1.5260.000047
ORF1ab/nsp3342H342HcaTcaC22B.1.5260.000047
ORF1ab/nsp3342H342YCatTat22B.1.5270.007407
ORF1ab/nsp3342H342YCatTat22B.1.5800.00813
ORF1ab/nsp3342H342YCatTat22B.1.5950.000522
ORF1ab/nsp3342H342HcaTcaC22B.1.617.10.000258
ORF1ab/nsp3342H342delCAT---22B.1.6210.000177
ORF1ab/nsp3342H342YCatTat22B.550.0059
ORF1ab/nsp3342H342YCatTat22C.160.002121
ORF1ab/nsp3342H342YCatTat22C.36.30.001134
ORF1ab/nsp3342H342LcAtcTt22D.20.00015
ORF1ab/nsp3342H342PcAtcCt22P.10.000032
ORF1ab/nsp3342H342YCatTat22P.1.10.000635
ORF1ab/nsp3342H342YCatTat22P.1.100.000539
ORF1ab/nsp3342H342QcaTcaG22P.1.20.002312
ORF1ab/nsp3342H342delCAT---22P.1.70.000639
ORF1ab/nsp3342H342YCatTat22P.20.000373
ORF1ab/nsp3342H342KCaTAaG110.055556
ORF1ab/nsp3342H342YCatTat110.055556
ORF1ab/nsp3342H342PcAtcCt110.055556
ORF1ab/nsp3342H342CCAtTGt110.055556
ORF1ab/nsp3342H342HcaTcaC110.055556
ORF1ab/nsp3342H342YCatTat11A0.000387
ORF1ab/nsp3342H342YCatTat11A.10.000282
ORF1ab/nsp3342H342YCatTat11A.270.001656
ORF1ab/nsp3342H342YCatTat11A.290.005319
ORF1ab/nsp3342H342XCaTTaA11All0
ORF1ab/nsp3342H342del1caTca-11All0
ORF1ab/nsp3342H342FCAtTTt11All0
ORF1ab/nsp3342H342ACAtGCt11All0
ORF1ab/nsp3342H342KCaTAaG11All0
ORF1ab/nsp3342H342del2cATc--11All0
ORF1ab/nsp3342H342RcAtcGt11AY.1000.000046
ORF1ab/nsp3342H342YCatTat11AY.1060.000335
ORF1ab/nsp3342H342RcAtcGt11AY.1080.001103
ORF1ab/nsp3342H342YCatTat11AY.110.001339
ORF1ab/nsp3342H342YCatTat11AY.1100.000113
ORF1ab/nsp3342H342delCAT---11AY.1130.000142
ORF1ab/nsp3342H342QcaTcaG11AY.1140.000231
ORF1ab/nsp3342H342HcaTcaC11AY.1140.000231
ORF1ab/nsp3342H342YCatTat11AY.1140.000231
ORF1ab/nsp3342H342YCatTat11AY.1150.005208
ORF1ab/nsp3342H342delCAT---11AY.1190.000035
ORF1ab/nsp3342H342QcaTcaA11AY.1190.000035
ORF1ab/nsp3342H342LcAtcTt11AY.1200.000037
ORF1ab/nsp3342H342RcAtcGt11AY.130.000161
ORF1ab/nsp3342H342YCatTat11AY.140.000088
ORF1ab/nsp3342H342YCatTat11AY.16.10.00047
ORF1ab/nsp3342H342delCAT---11AY.200.000039
ORF1ab/nsp3342H342RcAtcGt11AY.230.00007
ORF1ab/nsp3342H342delCAT---11AY.230.00007
ORF1ab/nsp3342H342delCAT---11AY.240.000431
ORF1ab/nsp3342H342delCAT---11AY.250.000006
ORF1ab/nsp3342H342LcAtcTt11AY.250.000006
ORF1ab/nsp3342H342HcaTcaC11AY.250.000006
ORF1ab/nsp3342H342delCAT---11AY.260.000028
ORF1ab/nsp3342H342NCatAat11AY.260.000028
ORF1ab/nsp3342H342RcAtcGt11AY.260.000028
ORF1ab/nsp3342H342HcaTcaC11AY.260.000028
ORF1ab/nsp3342H342RcAtcGt11AY.270.000065
ORF1ab/nsp3342H342YCatTat11AY.29.10.000221
ORF1ab/nsp3342H342QcaTcaA11AY.340.000097
ORF1ab/nsp3342H342YCatTat11AY.360.000148
ORF1ab/nsp3342H342YCatTat11AY.370.000316
ORF1ab/nsp3342H342YCatTat11AY.380.000499
ORF1ab/nsp3342H342YCatTat11AY.4.30.000842
ORF1ab/nsp3342H342delCAT---11AY.4.50.000107
ORF1ab/nsp3342H342YCatTat11AY.410.000294
ORF1ab/nsp3342H342HcaTcaC11AY.420.00004
ORF1ab/nsp3342H342NCatAat11AY.430.000004
ORF1ab/nsp3342H342delCAT---11AY.430.000004
ORF1ab/nsp3342H342MCATATG11AY.430.000004
ORF1ab/nsp3342H342NCatAat11AY.440.000006
ORF1ab/nsp3342H342RcAtcGt11AY.440.000006
ORF1ab/nsp3342H342delCAT---11AY.440.000006
ORF1ab/nsp3342H342QcaTcaA11AY.460.000104
ORF1ab/nsp3342H342YCatTat11AY.46.10.001027
ORF1ab/nsp3342H342YCatTat11AY.46.30.000934
ORF1ab/nsp3342H342YCatTat11AY.46.40.000165
ORF1ab/nsp3342H342RcAtcGt11AY.46.60.000072
ORF1ab/nsp3342H342HcaTcaC11AY.470.000031
ORF1ab/nsp3342H342PcAtcCt11AY.50.000021
ORF1ab/nsp3342H342LcAtcTt11AY.50.000021
ORF1ab/nsp3342H342LcAtcTt11AY.540.000095
ORF1ab/nsp3342H342PcAtcCt11AY.590.00053
ORF1ab/nsp3342H342HcaTcaC11AY.60.000041
ORF1ab/nsp3342H342YCatTat11AY.600.000938
ORF1ab/nsp3342H342RcAtcGt11AY.610.000105
ORF1ab/nsp3342H342NCatAat11AY.610.000105
ORF1ab/nsp3342H342YCatTat11AY.640.000595
ORF1ab/nsp3342H342delCAT---11AY.670.000464
ORF1ab/nsp3342H342QcaTcaA11AY.680.000274
ORF1ab/nsp3342H342YCatTat11AY.7.10.000113
ORF1ab/nsp3342H342HcaTcaC11AY.700.000209
ORF1ab/nsp3342H342YCatTat11AY.710.000475
ORF1ab/nsp3342H342YCatTat11AY.730.000665
ORF1ab/nsp3342H342RcAtcGt11AY.750.000056
ORF1ab/nsp3342H342delCAT---11AY.840.000437
ORF1ab/nsp3342H342HcaTcaC11AY.840.000437
ORF1ab/nsp3342H342YCatTat11AY.850.000427
ORF1ab/nsp3342H342YCatTat11AY.870.000833
ORF1ab/nsp3342H342YCatTat11AY.9.10.000084
ORF1ab/nsp3342H342XCaTTaA11AY.9.20.000037
ORF1ab/nsp3342H342HcaTcaC11AY.900.000684
ORF1ab/nsp3342H342YCatTat11AY.930.000273
ORF1ab/nsp3342H342DCatGat11AY.98.10.000048
ORF1ab/nsp3342H342delCAT---11AY.990.001049
ORF1ab/nsp3342H342RcAtcGt11AY.99.20.000092
ORF1ab/nsp3342H342LcAtcTt11B.10.000009
ORF1ab/nsp3342H342MCATATG11B.10.000009
ORF1ab/nsp3342H342CCAtTGt11B.10.000009
ORF1ab/nsp3342H342delCAT---11B.1.10.000018
ORF1ab/nsp3342H342RcAtcGt11B.1.1.10.000327
ORF1ab/nsp3342H342YCatTat11B.1.1.10.000327
ORF1ab/nsp3342H342YCatTat11B.1.1.1000.04
ORF1ab/nsp3342H342YCatTat11B.1.1.1330.008475
ORF1ab/nsp3342H342YCatTat11B.1.1.1410.002012
ORF1ab/nsp3342H342YCatTat11B.1.1.150.013514
ORF1ab/nsp3342H342RcAtcGt11B.1.1.1570.000913
ORF1ab/nsp3342H342YCatTat11B.1.1.2000.007463
ORF1ab/nsp3342H342QcaTcaG11B.1.1.2220.000204
ORF1ab/nsp3342H342PcAtcCt11B.1.1.2220.000204
ORF1ab/nsp3342H342YCatTat11B.1.1.2410.00207
ORF1ab/nsp3342H342RcAtcGt11B.1.1.250.000569
ORF1ab/nsp3342H342YCatTat11B.1.1.2550.00303
ORF1ab/nsp3342H342YCatTat11B.1.1.2580.003257
ORF1ab/nsp3342H342HcaTcaC11B.1.1.2690.001353
ORF1ab/nsp3342H342YCatTat11B.1.1.270.00565
ORF1ab/nsp3342H342YCatTat11B.1.1.2790.001121
ORF1ab/nsp3342H342YCatTat11B.1.1.2940.001266
ORF1ab/nsp3342H342RcAtcGt11B.1.1.3060.000438
ORF1ab/nsp3342H342delCAT---11B.1.1.3060.000438
ORF1ab/nsp3342H342YCatTat11B.1.1.3070.002532
ORF1ab/nsp3342H342YCatTat11B.1.1.3160.000925
ORF1ab/nsp3342H342delCAT---11B.1.1.330.000421
ORF1ab/nsp3342H342YCatTat11B.1.1.3430.020833
ORF1ab/nsp3342H342YCatTat11B.1.1.3470.018182
ORF1ab/nsp3342H342delCAT---11B.1.1.3480.000796
ORF1ab/nsp3342H342YCatTat11B.1.1.3980.003226
ORF1ab/nsp3342H342YCatTat11B.1.1.4090.002833
ORF1ab/nsp3342H342YCatTat11B.1.1.410.006329
ORF1ab/nsp3342H342YCatTat11B.1.1.4190.007407
ORF1ab/nsp3342H342YCatTat11B.1.1.4340.000349
ORF1ab/nsp3342H342QcaTcaG11B.1.1.450.014085
ORF1ab/nsp3342H342YCatTat11B.1.1.4660.008696
ORF1ab/nsp3342H342YCatTat11B.1.1.5170.006803
ORF1ab/nsp3342H342YCatTat11B.1.1.5230.001563
ORF1ab/nsp3342H342HcaTcaC11B.1.1.5260.003546
ORF1ab/nsp3342H342LcAtcTt11B.1.1.70.000001
ORF1ab/nsp3342H342del1caTca-11B.1.1.70.000001
ORF1ab/nsp3342H342DCatGat11B.1.1.70.000001
ORF1ab/nsp3342H342CCAtTGt11B.1.1.70.000001
ORF1ab/nsp3342H342NCatAat11B.1.1.70.000001
ORF1ab/nsp3342H342TCAtACt11B.1.1.70.000001
ORF1ab/nsp3342H342YCatTat11B.1.1.700.000341
ORF1ab/nsp3342H342delCAT---11B.1.110.30.000718
ORF1ab/nsp3342H342YCatTat11B.1.1280.000635
ORF1ab/nsp3342H342YCatTat11B.1.1460.004237
ORF1ab/nsp3342H342YCatTat11B.1.1470.000756
ORF1ab/nsp3342H342delCAT---11B.1.1600.000031
ORF1ab/nsp3342H342HcaTcaC11B.1.1600.000031
ORF1ab/nsp3342H342YCatTat11B.1.160.160.000929
ORF1ab/nsp3342H342YCatTat11B.1.177.170.000821
ORF1ab/nsp3342H342YCatTat11B.1.177.40.000211
ORF1ab/nsp3342H342YCatTat11B.1.177.440.000519
ORF1ab/nsp3342H342RcAtcGt11B.1.177.450.000381
ORF1ab/nsp3342H342YCatTat11B.1.177.540.000606
ORF1ab/nsp3342H342YCatTat11B.1.177.560.000668
ORF1ab/nsp3342H342RcAtcGt11B.1.177.600.000218
ORF1ab/nsp3342H342HcaTcaC11B.1.177.650.000665
ORF1ab/nsp3342H342YCatTat11B.1.177.770.000726
ORF1ab/nsp3342H342HcaTcaC11B.1.177.790.002342
ORF1ab/nsp3342H342YCatTat11B.1.177.860.000183
ORF1ab/nsp3342H342YCatTat11B.1.1890.004292
ORF1ab/nsp3342H342HcaTcaC11B.1.20.000009
ORF1ab/nsp3342H342QcaTcaG11B.1.20.000009
ORF1ab/nsp3342H342delCAT---11B.1.2180.005155
ORF1ab/nsp3342H342FCAtTTt11B.1.2210.000071
ORF1ab/nsp3342H342LcAtcTt11B.1.2210.000071
ORF1ab/nsp3342H342NCatAat11B.1.2220.001692
ORF1ab/nsp3342H342YCatTat11B.1.2320.000537
ORF1ab/nsp3342H342YCatTat11B.1.2350.002519
ORF1ab/nsp3342H342YCatTat11B.1.2360.002053
ORF1ab/nsp3342H342YCatTat11B.1.258.110.000396
ORF1ab/nsp3342H342YCatTat11B.1.258.120.007874
ORF1ab/nsp3342H342YCatTat11B.1.258.30.001675
ORF1ab/nsp3342H342YCatTat11B.1.2980.002114
ORF1ab/nsp3342H342LcAtcTt11B.1.30.002618
ORF1ab/nsp3342H342YCatTat11B.1.3050.002151
ORF1ab/nsp3342H342YCatTat11B.1.3200.001245
ORF1ab/nsp3342H342YCatTat11B.1.3280.03125
ORF1ab/nsp3342H342YCatTat11B.1.3490.000715
ORF1ab/nsp3342H342QcaTcaA11B.1.3510.00003
ORF1ab/nsp3342H342PcATcCC11B.1.3510.00003
ORF1ab/nsp3342H342HcaTcaC11B.1.3510.00003
ORF1ab/nsp3342H342YCatTat11B.1.351.20.000303
ORF1ab/nsp3342H342HcaTcaC11B.1.3560.001727
ORF1ab/nsp3342H342delCAT---11B.1.360.000146
ORF1ab/nsp3342H342YCatTat11B.1.36.10.00114
ORF1ab/nsp3342H342HcaTcaC11B.1.36.290.000517
ORF1ab/nsp3342H342YCatTat11B.1.3610.001289
ORF1ab/nsp3342H342YCatTat11B.1.3690.000285
ORF1ab/nsp3342H342HcaTcaC11B.1.3690.000285
ORF1ab/nsp3342H342YCatTat11B.1.3710.001122
ORF1ab/nsp3342H342YCatTat11B.1.3960.000706
ORF1ab/nsp3342H342YCatTat11B.1.3990.001934
ORF1ab/nsp3342H342HcaTcaC11B.1.4040.001302
ORF1ab/nsp3342H342YCatTat11B.1.4080.00369
ORF1ab/nsp3342H342YCatTat11B.1.4160.001269
ORF1ab/nsp3342H342YCatTat11B.1.4220.000812
ORF1ab/nsp3342H342YCatTat11B.1.4250.002994
ORF1ab/nsp3342H342delCAT---11B.1.4290.000024
ORF1ab/nsp3342H342RcAtcGt11B.1.4290.000024
ORF1ab/nsp3342H342YCatTat11B.1.4330.003195
ORF1ab/nsp3342H342YCatTat11B.1.4390.005917
ORF1ab/nsp3342H342YCatTat11B.1.4530.003236
ORF1ab/nsp3342H342YCatTat11B.1.4560.003268
ORF1ab/nsp3342H342YCatTat11B.1.4590.004082
ORF1ab/nsp3342H342PcAtcCt11B.1.4620.007246
ORF1ab/nsp3342H342YCatTat11B.1.4620.007246
ORF1ab/nsp3342H342YCatTat11B.1.4800.002488
ORF1ab/nsp3342H342PcAtcCt11B.1.4970.000315
ORF1ab/nsp3342H342YCatTat11B.1.5010.007353
ORF1ab/nsp3342H342YCatTat11B.1.5170.000427
ORF1ab/nsp3342H342NCatAat11B.1.5250.000113
ORF1ab/nsp3342H342HcaTcaC11B.1.5250.000113
ORF1ab/nsp3342H342YCatTat11B.1.5380.008065
ORF1ab/nsp3342H342YCatTat11B.1.5390.017544
ORF1ab/nsp3342H342YCatTat11B.1.5410.004425
ORF1ab/nsp3342H342YCatTat11B.1.5510.00129
ORF1ab/nsp3342H342YCatTat11B.1.5630.016949
ORF1ab/nsp3342H342NCatAat11B.1.5960.000087
ORF1ab/nsp3342H342delCAT---11B.1.5960.000087
ORF1ab/nsp3342H342SCATAGC11B.1.617.10.000129
ORF1ab/nsp3342H342DCatGat11B.1.617.20.000004
ORF1ab/nsp3342H342QcaTcaA11B.1.617.20.000004
ORF1ab/nsp3342H342YCatTat11B.1.6200.000946
ORF1ab/nsp3342H342HcaTcaC11B.1.6210.000089
ORF1ab/nsp3342H342del2cATc--11B.1.621.10.000506
ORF1ab/nsp3342H342QcaTcaG11B.1.6250.002353
ORF1ab/nsp3342H342delCAT---11B.1.6270.00202
ORF1ab/nsp3342H342YCatTat11B.1.6310.003367
ORF1ab/nsp3342H342QcaTcaG11B.1.6370.000073
ORF1ab/nsp3342H342HcaTcaC11B.1.930.000934
ORF1ab/nsp3342H342YCatTat11B.120.00641
ORF1ab/nsp3342H342YCatTat11B.290.003509
ORF1ab/nsp3342H342YCatTat11B.350.007812
ORF1ab/nsp3342H342YCatTat11B.400.000364
ORF1ab/nsp3342H342delCAT---11B.570.015152
ORF1ab/nsp3342H342YCatTat11C.10.002392
ORF1ab/nsp3342H342YCatTat11C.170.055556
ORF1ab/nsp3342H342YCatTat11C.360.000911
ORF1ab/nsp3342H342delCAT---11C.370.000116
ORF1ab/nsp3342H342HcaTcaC11D.20.000075
ORF1ab/nsp3342H342RcAtcGt11N.50.001767
ORF1ab/nsp3342H342delCAT---11N.60.007092
ORF1ab/nsp3342H342CCAtTGt11P.10.000016
ORF1ab/nsp3342H342RcAtcGt11P.10.000016
ORF1ab/nsp3342H342ACAtGCt11P.10.000016
ORF1ab/nsp3342H342YCatTat11P.1.120.000484
ORF1ab/nsp3342H342delCAT---11P.1.130.000898
ORF1ab/nsp3342H342HcaTcaC11P.1.140.000048
ORF1ab/nsp3342H342HcaTcaC11P.1.170.000162
ORF1ab/nsp3342H342RcAtcGt11P.20.000187
ORF1ab/nsp3342H342YCatTat11Q.70.001111
ORF1ab/nsp3342H342DCatGat11Q.80.000165
ORF1ab/nsp3342H342HcaTcaC11V.10.022727