CoV-GLUEGenomeCountriesLineagesMutationsInsertionsDeletionsUpdated:

CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF1ab/nsp3 : CodonNum = 328 & Codon = ---

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF1ab/nsp3328A328delA1146deldelGCA---11111113701-3703

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF1ab/nsp3328A328delGCA---111111All0.000021
ORF1ab/nsp3328A328delGCA---2020P.1.150.004647
ORF1ab/nsp3328A328delGCA---1616P.10.000252
ORF1ab/nsp3328A328delGCA---1010P.1.120.00484
ORF1ab/nsp3328A328delGCA---88B.10.000073
ORF1ab/nsp3328A328delGCA---440.222222
ORF1ab/nsp3328A328delGCA---44AY.430.000018
ORF1ab/nsp3328A328delGCA---44B.1.1.70.000004
ORF1ab/nsp3328A328delGCA---44B.1.6210.000354
ORF1ab/nsp3328A328delGCA---33AY.250.000018
ORF1ab/nsp3328A328delGCA---33B.1.10.000054
ORF1ab/nsp3328A328delGCA---33P.1.140.000143
ORF1ab/nsp3328A328delGCA---22B.1.5960.000174
ORF1ab/nsp3328A328delGCA---22B.1.617.20.000008
ORF1ab/nsp3328A328delGCA---22C.370.000232
ORF1ab/nsp3328A328delGCA---22N.60.014184
ORF1ab/nsp3328A328delGCA---22P.1.70.000639
ORF1ab/nsp3328A328delGCA---11AY.1130.000142
ORF1ab/nsp3328A328delGCA---11AY.1190.000035
ORF1ab/nsp3328A328delGCA---11AY.230.00007
ORF1ab/nsp3328A328delGCA---11AY.240.000431
ORF1ab/nsp3328A328delGCA---11AY.260.000028
ORF1ab/nsp3328A328delGCA---11AY.440.000006
ORF1ab/nsp3328A328delGCA---11AY.670.000464
ORF1ab/nsp3328A328delGCA---11AY.840.000437
ORF1ab/nsp3328A328delGCA---11B.1.1.3060.000438
ORF1ab/nsp3328A328delGCA---11B.1.1.330.000421
ORF1ab/nsp3328A328delGCA---11B.1.1.3480.000796
ORF1ab/nsp3328A328delGCA---11B.1.110.30.000718
ORF1ab/nsp3328A328delGCA---11B.1.1770.000013
ORF1ab/nsp3328A328delGCA---11B.1.20.000009
ORF1ab/nsp3328A328delGCA---11B.1.2180.005155
ORF1ab/nsp3328A328delGCA---11B.1.360.000146
ORF1ab/nsp3328A328delGCA---11B.1.4290.000024
ORF1ab/nsp3328A328delGCA---11B.1.438.10.000107
ORF1ab/nsp3328A328delGCA---11B.1.6270.00202
ORF1ab/nsp3328A328delGCA---11B.570.015152
ORF1ab/nsp3328A328delGCA---11P.1.10.000318
ORF1ab/nsp3328A328delGCA---11P.1.130.000898

CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk

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