CoV-GLUEGenomeCountriesLineagesMutationsInsertionsDeletionsUpdated:

CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF1ab/nsp3 : CodonNum = 326 & Codon = Tta

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF1ab/nsp3326L326LL1144LsynCtaTta762475060.9845233695-3697

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF1ab/nsp3326L326LCtaTta75067624All0.001436
ORF1ab/nsp3326L326LCtaTta16671704B.1.1.70.001492
ORF1ab/nsp3326L326LCtaTta709709AY.40.001104
ORF1ab/nsp3326L326LCtaTta428452B.1.617.20.001612
ORF1ab/nsp3326L326LCtaTta422422B.1.5260.009919
ORF1ab/nsp3326L326LCtaTta365369AY.250.002195
ORF1ab/nsp3326L326LCtaTta328329B.1.20.002888
ORF1ab/nsp3326L326LCtaTta274274AY.1030.001701
ORF1ab/nsp3326L326LCtaTta199199S.10.985149
ORF1ab/nsp3326L326LCtaTta198198B.1.177.530.473684
ORF1ab/nsp3326L326LCtaTta148155B.10.001356
ORF1ab/nsp3326L326LCtaTta148148B.1.1600.004616
ORF1ab/nsp3326L326LCtaTta145147AY.1020.003845
ORF1ab/nsp3326L326LCtaTta143143B.1.1.2170.52
ORF1ab/nsp3326L326LCtaTta137138AY.440.000834
ORF1ab/nsp3326L326LCtaTta133133AY.430.000589
ORF1ab/nsp3326L326LCtaTta125127AY.30.001243
ORF1ab/nsp3326L326LCtaTta104105AY.260.002944
ORF1ab/nsp3326L326LCtaTta8489P.10.001323
ORF1ab/nsp3326L326LCtaTta7373B.1.3750.059836
ORF1ab/nsp3326L326LCtaTta5858B.1.5250.006563
ORF1ab/nsp3326L326LCtaTta5757Q.30.008267
ORF1ab/nsp3326L326LCtaTta5252B.1.1.4320.065823
ORF1ab/nsp3326L326LCtaTta5252B.1.6370.0038
ORF1ab/nsp3326L326LCtaTta5050P.1.140.00239
ORF1ab/nsp3326L326LCtaTta4949B.1.10.000889
ORF1ab/nsp3326L326LCtaTta4449B.1.1770.000579
ORF1ab/nsp3326L326LCtaTta4646AY.390.001137
ORF1ab/nsp3326L326LCtaTta4242B.1.3510.001249
ORF1ab/nsp3326L326LCtaTta4242B.1.5361
ORF1ab/nsp3326L326LCtaTta3939AY.1000.001794
ORF1ab/nsp3326L326LCtaTta3838AY.99.20.003502
ORF1ab/nsp3326L326LCtaTta3434B.1.1.2840.003652
ORF1ab/nsp3326L326LCtaTta3333B.1.4290.000776
ORF1ab/nsp3326L326LCtaTta3031B.1.1.5190.001191
ORF1ab/nsp3326L326LCtaTta2929AY.290.000457
ORF1ab/nsp3326L326LCtaTta2626B.1.177.810.004922
ORF1ab/nsp3326L326LCtaTta2525AY.740.002891
ORF1ab/nsp3326L326LCtaTta2323AY.39.10.000911
ORF1ab/nsp3326L326LCtaTta2121AY.470.000653
ORF1ab/nsp3326L326LCtaTta2121B.1.214.30.15
ORF1ab/nsp3326L326LCtaTta2121B.1.6040.362069
ORF1ab/nsp3326L326LCtaTta2121P.1.10.006671
ORF1ab/nsp3326L326LCtaTta2020AY.420.000805
ORF1ab/nsp3326L326LCtaTta1919AY.360.002816
ORF1ab/nsp3326L326LCtaTta1919C.370.002205
ORF1ab/nsp3326L326LCtaTta1718AY.60.000699
ORF1ab/nsp3326L326LCtaTta1818B.1.4110.066667
ORF1ab/nsp3326L326LCtaTta1717AY.120.10.005457
ORF1ab/nsp3326L326LCtaTta1517B.1.258.170.00156
ORF1ab/nsp3326L326LCtaTta1616AY.1170.001352
ORF1ab/nsp3326L326LCtaTta1415AY.1180.000877
ORF1ab/nsp3326L326LCtaTta1414AY.330.000935
ORF1ab/nsp3326L326LCtaTta1414B.1.6120.037135
ORF1ab/nsp3326L326LCtaTta1313AY.460.001353
ORF1ab/nsp3326L326LCtaTta1212AY.1200.000446
ORF1ab/nsp3326L326LCtaTta1212B.1.2580.000799
ORF1ab/nsp3326L326LCtaTta1212B.1.360.001751
ORF1ab/nsp3326L326LCtaTta1212B.1.5820.005888
ORF1ab/nsp3326L326LCtaTta1111AY.9.20.000404
ORF1ab/nsp3326L326LCtaTta1111B.1.1.4340.003834
ORF1ab/nsp3326L326LCtaTta1111B.1.5960.000959
ORF1ab/nsp3326L326LCtaTta1010AY.4.20.000217
ORF1ab/nsp3326L326LCtaTta1010B.1.6210.000885
ORF1ab/nsp3326L326LCtaTta99AY.1190.000318
ORF1ab/nsp3326L326LCtaTta19AY.130.000161
ORF1ab/nsp3326L326LCtaTta99AY.230.000628
ORF1ab/nsp3326L326LCtaTta99AY.3.10.000767
ORF1ab/nsp3326L326LCtaTta99AY.840.003937
ORF1ab/nsp3326L326LCtaTta99B.1.36.290.004656
ORF1ab/nsp3326L326LCtaTta99Q.80.001484
ORF1ab/nsp3326L326LCtaTta88B.1.1.2140.000444
ORF1ab/nsp3326L326LCtaTta88B.1.177.570.002248
ORF1ab/nsp3326L326LCtaTta88B.1.2430.000557
ORF1ab/nsp3326L326LCtaTta78B.1.4270.000353
ORF1ab/nsp3326L326LCtaTta88R.10.00072
ORF1ab/nsp3326L326LCtaTta67AY.1210.000812
ORF1ab/nsp3326L326LCtaTta77AY.46.30.006536
ORF1ab/nsp3326L326LCtaTta77B.1.1.630.002701
ORF1ab/nsp3326L326LCtaTta77P.1.40.006836
ORF1ab/nsp3326L326LCtaTta66A.2.50.002994
ORF1ab/nsp3326L326LCtaTta66AY.240.002586
ORF1ab/nsp3326L326LCtaTta66AY.450.00073
ORF1ab/nsp3326L326LCtaTta66AY.50.000124
ORF1ab/nsp3326L326LCtaTta66AY.5.40.00166
ORF1ab/nsp3326L326LCtaTta56AY.610.000524
ORF1ab/nsp3326L326LCtaTta66B.1.1.2410.012422
ORF1ab/nsp3326L326LCtaTta66B.1.1.280.001867
ORF1ab/nsp3326L326LCtaTta66B.1.177.420.005367
ORF1ab/nsp3326L326LCtaTta66B.1.6280.002114
ORF1ab/nsp3326L326LCtaTta66D.20.00045
ORF1ab/nsp3326L326LCtaTta66P.60.018868
ORF1ab/nsp3326L326LCtaTta55AY.4.10.003687
ORF1ab/nsp3326L326LCtaTta55AY.540.000477
ORF1ab/nsp3326L326LCtaTta55AY.930.001365
ORF1ab/nsp3326L326LCtaTta55B0.000639
ORF1ab/nsp3326L326LCtaTta55B.1.1.10.001633
ORF1ab/nsp3326L326LCtaTta45B.1.177.210.000306
ORF1ab/nsp3326L326LCtaTta55B.1.177.600.001092
ORF1ab/nsp3326L326LCtaTta45B.1.2210.000284
ORF1ab/nsp3326L326LCtaTta55B.1.4060.030303
ORF1ab/nsp3326L326LCtaTta55B.1.5160.009785
ORF1ab/nsp3326L326LCtaTta55N.50.008834
ORF1ab/nsp3326L326LCtaTta45Q.10.000505
ORF1ab/nsp3326L326LCtaTta44A0.001548
ORF1ab/nsp3326L326LCtaTta44AY.1160.001147
ORF1ab/nsp3326L326LCtaTta34AY.200.000117
ORF1ab/nsp3326L326LCtaTta44AY.46.40.000658
ORF1ab/nsp3326L326LCtaTta44AY.660.004278
ORF1ab/nsp3326L326LCtaTta44B.1.1.500.002716
ORF1ab/nsp3326L326LCtaTta44B.1.3690.001141
ORF1ab/nsp3326L326LCtaTta44B.1.4090.003125
ORF1ab/nsp3326L326LCtaTta44B.1.4970.001259
ORF1ab/nsp3326L326LCtaTta44B.1.5600.018519
ORF1ab/nsp3326L326LCtaTta44B.1.5950.001044
ORF1ab/nsp3326L326LCtaTta44B.30.003322
ORF1ab/nsp3326L326LCtaTta33A.250.054545
ORF1ab/nsp3326L326LCtaTta33AY.1010.001471
ORF1ab/nsp3326L326LCtaTta33AY.29.10.000662
ORF1ab/nsp3326L326LCtaTta33AY.350.000699
ORF1ab/nsp3326L326LCtaTta33AY.4.2.10.000447
ORF1ab/nsp3326L326LCtaTta33AY.590.001589
ORF1ab/nsp3326L326LCtaTta33AY.620.001307
ORF1ab/nsp3326L326LCtaTta33AY.850.001282
ORF1ab/nsp3326L326LCtaTta33AY.980.000237
ORF1ab/nsp3326L326LCtaTta33B.1.1.2160.002671
ORF1ab/nsp3326L326LCtaTta33B.1.1.3160.002775
ORF1ab/nsp3326L326LCtaTta33B.1.1.3740.007126
ORF1ab/nsp3326L326LCtaTta33B.1.1.4130.02069
ORF1ab/nsp3326L326LCtaTta33B.1.177.100.002634
ORF1ab/nsp3326L326LCtaTta33B.1.177.410.0075
ORF1ab/nsp3326L326LCtaTta23B.1.2400.000431
ORF1ab/nsp3326L326LCtaTta33B.1.3240.004815
ORF1ab/nsp3326L326LCtaTta33B.1.3490.002144
ORF1ab/nsp3326L326LCtaTta33B.1.466.20.001174
ORF1ab/nsp3326L326LCtaTta33B.1.5640.001278
ORF1ab/nsp3326L326LCtaTta33B.6.60.002667
ORF1ab/nsp3326L326LCtaTta22A.2.40.006734
ORF1ab/nsp3326L326LCtaTta22A.210.00554
ORF1ab/nsp3326L326LCtaTta22AE.80.000978
ORF1ab/nsp3326L326LCtaTta22AU.20.004843
ORF1ab/nsp3326L326LCtaTta22AY.100.00106
ORF1ab/nsp3326L326LCtaTta22AY.1060.00067
ORF1ab/nsp3326L326LCtaTta22AY.140.000176
ORF1ab/nsp3326L326LCtaTta22AY.270.000129
ORF1ab/nsp3326L326LCtaTta22AY.300.000791
ORF1ab/nsp3326L326LCtaTta22AY.320.001065
ORF1ab/nsp3326L326LCtaTta22AY.630.000774
ORF1ab/nsp3326L326LCtaTta22AY.640.00119
ORF1ab/nsp3326L326LCtaTta22AY.750.000112
ORF1ab/nsp3326L326LCtaTta22AY.780.003082
ORF1ab/nsp3326L326LCtaTta22AY.880.001768
ORF1ab/nsp3326L326LCtaTta22B.1.1.2790.002242
ORF1ab/nsp3326L326LCtaTta22B.1.1.3170.000823
ORF1ab/nsp3326L326LCtaTta22B.1.1.330.000842
ORF1ab/nsp3326L326LCtaTta22B.1.1.370.000386
ORF1ab/nsp3326L326LCtaTta22B.1.1.4870.011173
ORF1ab/nsp3326L326LCtaTta22B.1.1.5000.04
ORF1ab/nsp3326L326LCtaTta22B.1.1390.001466
ORF1ab/nsp3326L326LCtaTta22B.1.177.160.001329
ORF1ab/nsp3326L326LCtaTta22B.1.177.40.000422
ORF1ab/nsp3326L326LCtaTta22B.1.3110.000549
ORF1ab/nsp3326L326LCtaTta22B.1.36.170.000988
ORF1ab/nsp3326L326LCtaTta22B.1.36.240.012346
ORF1ab/nsp3326L326LCtaTta22B.1.36.360.001204
ORF1ab/nsp3326L326LCtaTta22B.1.4040.002604
ORF1ab/nsp3326L326LCtaTta22B.1.4480.005249
ORF1ab/nsp3326L326LCtaTta22B.1.5610.000794
ORF1ab/nsp3326L326LCtaTta22B.1.5750.000607
ORF1ab/nsp3326L326LCtaTta22B.1.5990.007299
ORF1ab/nsp3326L326LCtaTta22B.1.617.10.000258
ORF1ab/nsp3326L326LCtaTta22P.1.170.000324
ORF1ab/nsp3326L326LCtaTta22P.20.000373
ORF1ab/nsp3326L326LCtaTta22Z.10.00578
ORF1ab/nsp3326L326LCtaTta11A.2.5.20.001572
ORF1ab/nsp3326L326LCtaTta11A.23.10.000704
ORF1ab/nsp3326L326LCtaTta11AE.10.011364
ORF1ab/nsp3326L326LCtaTta11AL.10.012987
ORF1ab/nsp3326L326LCtaTta11AW.10.003049
ORF1ab/nsp3326L326LCtaTta11AY.10.000396
ORF1ab/nsp3326L326LCtaTta11AY.1050.000643
ORF1ab/nsp3326L326LCtaTta11AY.1080.001103
ORF1ab/nsp3326L326LCtaTta11AY.1090.00074
ORF1ab/nsp3326L326LCtaTta11AY.1100.000113
ORF1ab/nsp3326L326LCtaTta11AY.1110.000183
ORF1ab/nsp3326L326LCtaTta11AY.1140.000231
ORF1ab/nsp3326L326LCtaTta11AY.120.000316
ORF1ab/nsp3326L326LCtaTta11AY.120.2.10.000498
ORF1ab/nsp3326L326LCtaTta11AY.160.00038
ORF1ab/nsp3326L326LCtaTta11AY.16.10.00047
ORF1ab/nsp3326L326LCtaTta11AY.190.00114
ORF1ab/nsp3326L326LCtaTta11AY.280.00189
ORF1ab/nsp3326L326LCtaTta11AY.340.000097
ORF1ab/nsp3326L326LCtaTta11AY.4.50.000107
ORF1ab/nsp3326L326LCtaTta11AY.410.000294
ORF1ab/nsp3326L326LCtaTta11AY.46.20.000635
ORF1ab/nsp3326L326LCtaTta11AY.480.000465
ORF1ab/nsp3326L326LCtaTta11AY.5.30.000337
ORF1ab/nsp3326L326LCtaTta11AY.550.000917
ORF1ab/nsp3326L326LCtaTta11AY.560.001605
ORF1ab/nsp3326L326LCtaTta11AY.680.000274
ORF1ab/nsp3326L326LCtaTta11AY.7.20.000559
ORF1ab/nsp3326L326LCtaTta11AY.700.000209
ORF1ab/nsp3326L326LCtaTta11AY.730.000665
ORF1ab/nsp3326L326LCtaTta11AY.770.001127
ORF1ab/nsp3326L326LCtaTta11AY.870.000833
ORF1ab/nsp3326L326LCtaTta11AY.9.10.000084
ORF1ab/nsp3326L326LCtaTta11AY.98.10.000048
ORF1ab/nsp3326L326LCtaTta11AY.99.10.001553
ORF1ab/nsp3326L326LCtaTta11AZ.20.000821
ORF1ab/nsp3326L326LCtaTta11AZ.40.003356
ORF1ab/nsp3326L326LCtaTta11B.1.1.100.001115
ORF1ab/nsp3326L326LCtaTta11B.1.1.1610.003534
ORF1ab/nsp3326L326LCtaTta11B.1.1.1890.001513
ORF1ab/nsp3326L326LCtaTta11B.1.1.1980.001468
ORF1ab/nsp3326L326LCtaTta11B.1.1.250.000569
ORF1ab/nsp3326L326LCtaTta11B.1.1.2770.000759
ORF1ab/nsp3326L326LCtaTta11B.1.1.3110.000358
ORF1ab/nsp3326L326LCtaTta11B.1.1.3510.002793
ORF1ab/nsp3326L326LCtaTta11B.1.1.3710.010417
ORF1ab/nsp3326L326LCtaTta11B.1.1.390.00051
ORF1ab/nsp3326L326LCtaTta11B.1.1.4120.007634
ORF1ab/nsp3326L326LCtaTta11B.1.1.4640.001473
ORF1ab/nsp3326L326LCtaTta11B.1.1.470.005348
ORF1ab/nsp3326L326LCtaTta11B.1.1.560.017857
ORF1ab/nsp3326L326LCtaTta11B.1.1.990.02381
ORF1ab/nsp3326L326LCtaTta11B.1.1060.03125
ORF1ab/nsp3326L326LCtaTta11B.1.110.30.000718
ORF1ab/nsp3326L326LCtaTta11B.1.160.110.005714
ORF1ab/nsp3326L326LCtaTta11B.1.160.240.004425
ORF1ab/nsp3326L326LCtaTta11B.1.177.230.003236
ORF1ab/nsp3326L326LCtaTta11B.1.177.440.000519
ORF1ab/nsp3326L326LCtaTta11B.1.177.70.000165
ORF1ab/nsp3326L326LCtaTta11B.1.177.730.000566
ORF1ab/nsp3326L326LCtaTta11B.1.177.770.000726
ORF1ab/nsp3326L326LCtaTta11B.1.214.20.0006
ORF1ab/nsp3326L326LCtaTta11B.1.2350.002519
ORF1ab/nsp3326L326LCtaTta11B.1.2370.004975
ORF1ab/nsp3326L326LCtaTta11B.1.2600.003344
ORF1ab/nsp3326L326LCtaTta11B.1.2650.001271
ORF1ab/nsp3326L326LCtaTta11B.1.3020.013333
ORF1ab/nsp3326L326LCtaTta11B.1.36.100.004785
ORF1ab/nsp3326L326LCtaTta11B.1.36.160.001425
ORF1ab/nsp3326L326LCtaTta11B.1.36.210.00216
ORF1ab/nsp3326L326LCtaTta11B.1.3610.001289
ORF1ab/nsp3326L326LCtaTta11B.1.3620.001541
ORF1ab/nsp3326L326LCtaTta11B.1.4080.00369
ORF1ab/nsp3326L326LCtaTta11B.1.4250.002994
ORF1ab/nsp3326L326LCtaTta11B.1.438.10.000107
ORF1ab/nsp3326L326LCtaTta11B.1.4560.003268
ORF1ab/nsp3326L326LCtaTta11B.1.4700.001404
ORF1ab/nsp3326L326LCtaTta11B.1.4800.002488
ORF1ab/nsp3326L326LCtaTta11B.1.5170.000427
ORF1ab/nsp3326L326LCtaTta11B.1.5400.009709
ORF1ab/nsp3326L326LCtaTta11B.1.5510.00129
ORF1ab/nsp3326L326LCtaTta11B.1.5650.00081
ORF1ab/nsp3326L326LCtaTta11B.1.5770.000687
ORF1ab/nsp3326L326LCtaTta11B.1.5800.004065
ORF1ab/nsp3326L326LCtaTta11B.1.5870.001898
ORF1ab/nsp3326L326LCtaTta11B.1.621.10.000506
ORF1ab/nsp3326L326LCtaTta11B.1.9.50.005682
ORF1ab/nsp3326L326LCtaTta11C.10.002392
ORF1ab/nsp3326L326LCtaTta11P.1.100.000269
ORF1ab/nsp3326L326LCtaTta11P.1.120.000484
ORF1ab/nsp3326L326LCtaTta11P.1.130.000898
ORF1ab/nsp3326L326LCtaTta11P.1.150.000232
ORF1ab/nsp3326L326LCtaTta11P.1.17.10.000875
ORF1ab/nsp3326L326LCtaTta11P.1.70.000319

CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk

CoV-GLUE uses sequence data from GISAID. GISAID data provided via this web application is subject to GISAID's Terms and Conditions.