CoV-GLUEGenomeCountriesLineagesMutationsInsertionsDeletionsUpdated:

CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF1ab/nsp3 : CodonNum = 325

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF1ab/nsp3325V325FV1143FnonsynGttTtt707570730.9997173692-3694
ORF1ab/nsp3325V325FV1143FnonsynGtTTtC707520.0002826863692-3694
ORF1ab/nsp3325V325VV1143VsyngtTgtC3492150.6160463692-3694
ORF1ab/nsp3325V325VV1143VsyngtTgtG349930.2664763692-3694
ORF1ab/nsp3325V325VV1143VsyngtTgtA349410.1174793692-3694
ORF1ab/nsp3325V325IV1143InonsynGttAtt2262240.991153692-3694
ORF1ab/nsp3325V325IV1143InonsynGtTAtC22620.008849563692-3694
ORF1ab/nsp3325V325delV1143deldelGTT---10610613692-3694
ORF1ab/nsp3325V325AV1143AnonsyngTtgCt84820.976193692-3694
ORF1ab/nsp3325V325AV1143AnonsyngTTgCA8420.02380953692-3694
ORF1ab/nsp3325V325LV1143LnonsynGttCtt17150.8823533692-3694
ORF1ab/nsp3325V325LV1143LnonsynGtTTtA1720.1176473692-3694
ORF1ab/nsp3325V325GV1143GnonsyngTtgGt530.63692-3694
ORF1ab/nsp3325V325GV1143GnonsyngTTgGC520.43692-3694
ORF1ab/nsp3325V325DV1143DnonsyngTtgAt3313692-3694
ORF1ab/nsp3325V325del1V1143del1delgtTgt-320.6666673692-3694
ORF1ab/nsp3325V325del1V1143del1delgTtg-t310.3333333692-3694
ORF1ab/nsp3325V325CV1143CnonsynGTtTGt210.53692-3694
ORF1ab/nsp3325V325CV1143CnonsynGTTTGC210.53692-3694
ORF1ab/nsp3325V325del2V1143del2delgTTg--1113692-3694
ORF1ab/nsp3325V325TV1143TnonsynGTtACt1113692-3694

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF1ab/nsp3325V325FGttTtt70737075All0.001353
ORF1ab/nsp3325V325FGtTTtC27075All0
ORF1ab/nsp3325V325FGttTtt846846AY.40.001317
ORF1ab/nsp3325V325FGttTtt652652B.1.1.5190.025892
ORF1ab/nsp3325V325FGttTtt636637B.1.1.70.000569
ORF1ab/nsp3325V325FGtTTtC1637B.1.1.70.000001
ORF1ab/nsp3325V325FGttTtt614614B.1.617.20.002312
ORF1ab/nsp3325V325FGttTtt587587B.1.1.4330.836182
ORF1ab/nsp3325V325VgtTgtC215349All0.000041
ORF1ab/nsp3325V325VgtTgtG93349All0.000018
ORF1ab/nsp3325V325VgtTgtA41349All0.000008
ORF1ab/nsp3325V325FGttTtt307307AY.390.007586
ORF1ab/nsp3325V325FGttTtt295295AY.1030.001832
ORF1ab/nsp3325V325FGttTtt249249AY.430.001103
ORF1ab/nsp3325V325IGttAtt224226All0.000043
ORF1ab/nsp3325V325IGtTAtC2226All0
ORF1ab/nsp3325V325FGttTtt165165AY.50.003407
ORF1ab/nsp3325V325FGttTtt143143AY.440.00087
ORF1ab/nsp3325V325FGttTtt120120AY.250.000722
ORF1ab/nsp3325V325FGttTtt116116B.10.001063
ORF1ab/nsp3325V325delGTT---106106All0.00002
ORF1ab/nsp3325V325FGttTtt104104B.1.20.000916
ORF1ab/nsp3325V325FGttTtt9595AY.1020.002519
ORF1ab/nsp3325V325FGttTtt9595AY.750.005322
ORF1ab/nsp3325V325FGttTtt9090AY.9.10.007535
ORF1ab/nsp3325V325AgTtgCt8284All0.000016
ORF1ab/nsp3325V325AgTTgCA284All0
ORF1ab/nsp3325V325FGttTtt8383AY.740.009599
ORF1ab/nsp3325V325FGttTtt7777AY.1170.006508
ORF1ab/nsp3325V325FGttTtt7575B.1.4290.001765
ORF1ab/nsp3325V325FGttTtt7373AY.360.01082
ORF1ab/nsp3325V325FGttTtt7272B.1.10.001306
ORF1ab/nsp3325V325VgtTgtG7171AY.860.058921
ORF1ab/nsp3325V325FGttTtt7070B.1.1770.000922
ORF1ab/nsp3325V325FGttTtt6868P.10.001071
ORF1ab/nsp3325V325VgtTgtC6565B.1.1.2220.01326
ORF1ab/nsp3325V325VgtTgtC2964B.1.1.70.000026
ORF1ab/nsp3325V325VgtTgtA2764B.1.1.70.000024
ORF1ab/nsp3325V325VgtTgtG864B.1.1.70.000007
ORF1ab/nsp3325V325FGttTtt6464B.1.360.009338
ORF1ab/nsp3325V325FGttTtt6363AY.30.000627
ORF1ab/nsp3325V325FGttTtt5757AY.1190.002013
ORF1ab/nsp3325V325FGttTtt5757AY.540.005435
ORF1ab/nsp3325V325FGttTtt5252B.1.2210.003694
ORF1ab/nsp3325V325FGttTtt4646B.1.177.810.008709
ORF1ab/nsp3325V325FGttTtt4141AY.260.001161
ORF1ab/nsp3325V325IGttAtt4141B.1.20.000361
ORF1ab/nsp3325V325FGttTtt3838AY.9.20.001396
ORF1ab/nsp3325V325VgtTgtC3838B.1.438.10.004076
ORF1ab/nsp3325V325AgTtgCt3434AY.30.000338
ORF1ab/nsp3325V325FGttTtt3333AY.1200.001227
ORF1ab/nsp3325V325FGttTtt3030B.1.1.120.223881
ORF1ab/nsp3325V325FGttTtt2929AY.99.20.002673
ORF1ab/nsp3325V325FGttTtt2929B.1.1.700.009891
ORF1ab/nsp3325V325FGttTtt2727AY.46.60.00195
ORF1ab/nsp3325V325IGttAtt2424B.1.2430.00167
ORF1ab/nsp3325V325IGttAtt2323AY.40.000036
ORF1ab/nsp3325V325FGttTtt2323AY.500.018385
ORF1ab/nsp3325V325FGttTtt2323B.1.2580.001531
ORF1ab/nsp3325V325FGttTtt2222AY.470.000684
ORF1ab/nsp3325V325FGttTtt2121AY.1000.000966
ORF1ab/nsp3325V325IGttAtt2121B.1.1.70.000019
ORF1ab/nsp3325V325delGTT---1919P.1.150.004414
ORF1ab/nsp3325V325FGttTtt1919R.10.00171
ORF1ab/nsp3325V325FGttTtt1818AY.1050.011576
ORF1ab/nsp3325V325FGttTtt1818AY.4.20.00039
ORF1ab/nsp3325V325FGttTtt1818B.1.5260.000423
ORF1ab/nsp3325V325LGttCtt1517All0.000003
ORF1ab/nsp3325V325LGtTTtA217All0
ORF1ab/nsp3325V325FGttTtt1717AY.450.002069
ORF1ab/nsp3325V325FGttTtt1717B.1.1600.00053
ORF1ab/nsp3325V325IGttAtt1616AY.250.000096
ORF1ab/nsp3325V325FGttTtt1616AY.340.001551
ORF1ab/nsp3325V325FGttTtt1616AY.600.015009
ORF1ab/nsp3325V325delGTT---1616P.10.000252
ORF1ab/nsp3325V325FGttTtt1415AY.230.000976
ORF1ab/nsp3325V325FGtTTtC115AY.230.00007
ORF1ab/nsp3325V325FGttTtt1515AY.5.40.004151
ORF1ab/nsp3325V325FGttTtt1414AY.1160.004015
ORF1ab/nsp3325V325FGttTtt1414AY.200.000544
ORF1ab/nsp3325V325FGttTtt1414AY.290.000221
ORF1ab/nsp3325V325FGttTtt1414AY.330.000935
ORF1ab/nsp3325V325FGttTtt1414B.1.1.3760.083333
ORF1ab/nsp3325V325FGttTtt1313AY.3.10.001108
ORF1ab/nsp3325V325FGttTtt1313AY.60.000535
ORF1ab/nsp3325V325FGttTtt1313B.1.177.440.006746
ORF1ab/nsp3325V325VgtTgtC1012AY.40.000016
ORF1ab/nsp3325V325VgtTgtG212AY.40.000003
ORF1ab/nsp3325V325FGttTtt1111B.1.36.290.005691
ORF1ab/nsp3325V325IGttAtt1111B.1.617.20.000041
ORF1ab/nsp3325V325FGttTtt1111B.1.6210.000974
ORF1ab/nsp3325V325FGttTtt1111B.1.6370.000804
ORF1ab/nsp3325V325FGttTtt1111Q.10.00139
ORF1ab/nsp3325V325FGttTtt1010B.1.1.500.006789
ORF1ab/nsp3325V325FGttTtt1010B.1.177.620.011919
ORF1ab/nsp3325V325VgtTgtC910B.1.20.000079
ORF1ab/nsp3325V325VgtTgtA110B.1.20.000009
ORF1ab/nsp3325V325delGTT---1010P.1.120.00484
ORF1ab/nsp3325V325FGttTtt99AY.270.000582
ORF1ab/nsp3325V325FGttTtt99AY.4.50.000967
ORF1ab/nsp3325V325IGttAtt99AY.590.004767
ORF1ab/nsp3325V325FGttTtt99B.1.4680.051429
ORF1ab/nsp3325V325VgtTgtC69B.1.617.20.000023
ORF1ab/nsp3325V325VgtTgtG39B.1.617.20.000011
ORF1ab/nsp3325V325FGttTtt88AY.1210.001083
ORF1ab/nsp3325V325FGttTtt88AY.610.000838
ORF1ab/nsp3325V325delGTT---88B.10.000073
ORF1ab/nsp3325V325VgtTgtC78B.10.000064
ORF1ab/nsp3325V325VgtTgtG18B.10.000009
ORF1ab/nsp3325V325FGttTtt88B.1.3510.000238
ORF1ab/nsp3325V325FGttTtt88C.370.000929
ORF1ab/nsp3325V325VgtTgtC77AY.1190.000247
ORF1ab/nsp3325V325VgtTgtC37AY.30.00003
ORF1ab/nsp3325V325VgtTgtG37AY.30.00003
ORF1ab/nsp3325V325VgtTgtA17AY.30.00001
ORF1ab/nsp3325V325IGttAtt67AY.440.000037
ORF1ab/nsp3325V325IGtTAtC17AY.440.000006
ORF1ab/nsp3325V325FGttTtt77AY.7.10.000789
ORF1ab/nsp3325V325FGttTtt77B.1.1.2220.001428
ORF1ab/nsp3325V325FGttTtt77B.1.2430.000487
ORF1ab/nsp3325V325FGttTtt77B.1.5250.000792
ORF1ab/nsp3325V325IGttAtt66AY.430.000027
ORF1ab/nsp3325V325FGttTtt66AY.90.000406
ORF1ab/nsp3325V325VgtTgtC66B.1.1.2800.018519
ORF1ab/nsp3325V325FGttTtt66B.1.1.3060.00263
ORF1ab/nsp3325V325FGttTtt66B.1.1.3710.0625
ORF1ab/nsp3325V325delGTT---66B.1.1.70.000005
ORF1ab/nsp3325V325FGttTtt66B.1.4160.007614
ORF1ab/nsp3325V325FGttTtt66B.130.272727
ORF1ab/nsp3325V325GgTtgGt35All0.000001
ORF1ab/nsp3325V325GgTTgGC25All0
ORF1ab/nsp3325V325FGttTtt55AY.1180.000313
ORF1ab/nsp3325V325FGttTtt55AY.420.000201
ORF1ab/nsp3325V325AgTtgCt55AY.430.000022
ORF1ab/nsp3325V325FGttTtt55AY.920.001436
ORF1ab/nsp3325V325FGttTtt55AY.980.000395
ORF1ab/nsp3325V325IGttAtt55B.10.000046
ORF1ab/nsp3325V325FGttTtt55B.1.1.2140.000277
ORF1ab/nsp3325V325FGttTtt55B.1.1.280.001556
ORF1ab/nsp3325V325FGttTtt55B.1.1.4340.001743
ORF1ab/nsp3325V325AgTtgCt55B.1.1.70.000004
ORF1ab/nsp3325V325FGttTtt55B.1.177.320.006748
ORF1ab/nsp3325V325FGttTtt55B.1.2400.001078
ORF1ab/nsp3325V325FGttTtt55B.1.4270.000252
ORF1ab/nsp3325V325VgtTgtC45B.1.4680.022857
ORF1ab/nsp3325V325VgtTgtA15B.1.4680.005714
ORF1ab/nsp3325V325FGttTtt55B.1.5640.002129
ORF1ab/nsp3325V325FGttTtt55C.36.30.002836
ORF1ab/nsp3325V325VgtTgtA440.222222
ORF1ab/nsp3325V325FGttTtt44AY.1070.001864
ORF1ab/nsp3325V325FGttTtt44AY.1100.000451
ORF1ab/nsp3325V325FGttTtt44AY.140.000352
ORF1ab/nsp3325V325IGttAtt44AY.230.000279
ORF1ab/nsp3325V325FGttTtt44AY.75.10.000721
ORF1ab/nsp3325V325FGttTtt44AY.98.10.000194
ORF1ab/nsp3325V325FGttTtt44AZ.10.003469
ORF1ab/nsp3325V325FGttTtt44B0.000511
ORF1ab/nsp3325V325AgTtgCt44B.10.000037
ORF1ab/nsp3325V325FGttTtt44B.1.1.250.002274
ORF1ab/nsp3325V325FGttTtt44B.1.1.3020.008299
ORF1ab/nsp3325V325FGttTtt44B.1.1.3360.066667
ORF1ab/nsp3325V325AgTtgCt44B.1.1770.000053
ORF1ab/nsp3325V325FGttTtt44B.1.177.70.000659
ORF1ab/nsp3325V325FGttTtt44B.1.2930.05
ORF1ab/nsp3325V325VgtTgtC44B.1.36.290.002069
ORF1ab/nsp3325V325delGTT---44B.1.6210.000354
ORF1ab/nsp3325V325FGttTtt44B.400.001457
ORF1ab/nsp3325V325IGttAtt44C.370.000464
ORF1ab/nsp3325V325FGttTtt44P.1.140.000191
ORF1ab/nsp3325V325VgtTgtC44P.1.50.307692
ORF1ab/nsp3325V325FGttTtt44P.20.000747
ORF1ab/nsp3325V325DgTtgAt33All0.000001
ORF1ab/nsp3325V325del1gtTgt-23All0
ORF1ab/nsp3325V325del1gTtg-t13All0
ORF1ab/nsp3325V325FGttTtt33AY.1080.003308
ORF1ab/nsp3325V325FGttTtt33AY.240.001293
ORF1ab/nsp3325V325delGTT---33AY.430.000013
ORF1ab/nsp3325V325VgtTgtA23AY.46.40.000329
ORF1ab/nsp3325V325VgtTgtC13AY.46.40.000165
ORF1ab/nsp3325V325FGttTtt33AY.710.001425
ORF1ab/nsp3325V325FGttTtt33AY.730.001996
ORF1ab/nsp3325V325FGttTtt33AY.950.002283
ORF1ab/nsp3325V325delGTT---33B.1.10.000054
ORF1ab/nsp3325V325FGttTtt33B.1.1.1570.00274
ORF1ab/nsp3325V325FGttTtt33B.1.1.2630.004673
ORF1ab/nsp3325V325FGttTtt33B.1.1.750.031915
ORF1ab/nsp3325V325FGttTtt33B.1.1260.003827
ORF1ab/nsp3325V325FGttTtt33B.1.36.180.001261
ORF1ab/nsp3325V325FGttTtt33B.1.4000.001287
ORF1ab/nsp3325V325FGttTtt33B.1.4200.03125
ORF1ab/nsp3325V325FGttTtt33B.1.617.10.000387
ORF1ab/nsp3325V325AgTtgCt33B.1.617.20.000011
ORF1ab/nsp3325V325VgtTgtC23B.1.6210.000177
ORF1ab/nsp3325V325VgtTgtG13B.1.6210.000089
ORF1ab/nsp3325V325FGttTtt33B.1.621.10.001517
ORF1ab/nsp3325V325FGttTtt33B.1.6270.006061
ORF1ab/nsp3325V325FGttTtt33D.20.000225
ORF1ab/nsp3325V325IGttAtt33P.10.000047
ORF1ab/nsp3325V325delGTT---33P.1.140.000143
ORF1ab/nsp3325V325LGtTTtA220.111111
ORF1ab/nsp3325V325AgTTgCA220.111111
ORF1ab/nsp3325V325del1gtTgt-220.111111
ORF1ab/nsp3325V325delGTT---220.111111
ORF1ab/nsp3325V325FGttTtt22AA.10.014493
ORF1ab/nsp3325V325CGTTTGC12All0
ORF1ab/nsp3325V325CGTtTGt12All0
ORF1ab/nsp3325V325IGttAtt22AY.1030.000012
ORF1ab/nsp3325V325FGttTtt22AY.160.000759
ORF1ab/nsp3325V325FGttTtt22AY.16.10.00094
ORF1ab/nsp3325V325FGttTtt22AY.20.000712
ORF1ab/nsp3325V325IGttAtt22AY.200.000078
ORF1ab/nsp3325V325AgTtgCt22AY.250.000012
ORF1ab/nsp3325V325delGTT---22AY.250.000012
ORF1ab/nsp3325V325VgtTgtC22AY.250.000012
ORF1ab/nsp3325V325FGttTtt22AY.29.10.000441
ORF1ab/nsp3325V325LGttCtt22AY.30.00002
ORF1ab/nsp3325V325AgTtgCt22AY.40.000003
ORF1ab/nsp3325V325AgTtgCt22AY.440.000012
ORF1ab/nsp3325V325FGttTtt22AY.460.000208
ORF1ab/nsp3325V325FGttTtt22AY.46.20.001271
ORF1ab/nsp3325V325FGttTtt22AY.46.40.000329
ORF1ab/nsp3325V325IGttAtt22AY.50.000041
ORF1ab/nsp3325V325FGttTtt22AY.5.30.000675
ORF1ab/nsp3325V325FGttTtt22AY.510.001818
ORF1ab/nsp3325V325LGttCtt22AY.540.000191
ORF1ab/nsp3325V325FGttTtt22AY.650.001066
ORF1ab/nsp3325V325FGttTtt22AY.70.000392
ORF1ab/nsp3325V325IGttAtt22AY.7.20.001119
ORF1ab/nsp3325V325FGttTtt22AY.840.000875
ORF1ab/nsp3325V325FGttTtt22AY.850.000854
ORF1ab/nsp3325V325FGttTtt22AY.910.001461
ORF1ab/nsp3325V325IGttAtt22B.1.10.000036
ORF1ab/nsp3325V325FGttTtt22B.1.1.1700.002494
ORF1ab/nsp3325V325FGttTtt22B.1.1.1890.003026
ORF1ab/nsp3325V325FGttTtt22B.1.1.1980.002937
ORF1ab/nsp3325V325IGttAtt22B.1.1.280.000622
ORF1ab/nsp3325V325FGttTtt22B.1.1.2840.000215
ORF1ab/nsp3325V325IGttAtt22B.1.1.2940.002532
ORF1ab/nsp3325V325FGttTtt22B.1.1.3010.002358
ORF1ab/nsp3325V325FGttTtt22B.1.1.3180.000604
ORF1ab/nsp3325V325FGttTtt22B.1.1.370.000386
ORF1ab/nsp3325V325FGttTtt22B.1.1.390.001019
ORF1ab/nsp3325V325AgTtgCt22B.1.1.5180.012658
ORF1ab/nsp3325V325AgTtgCt22B.1.1.5190.000079
ORF1ab/nsp3325V325LGttCtt22B.1.1.70.000002
ORF1ab/nsp3325V325GgTTgGC12B.1.1.70.000001
ORF1ab/nsp3325V325GgTtgGt12B.1.1.70.000001
ORF1ab/nsp3325V325CGTtTGt12B.1.1.70.000001
ORF1ab/nsp3325V325CGTTTGC12B.1.1.70.000001
ORF1ab/nsp3325V325FGttTtt22B.1.177.120.000303
ORF1ab/nsp3325V325FGttTtt22B.1.177.770.001452
ORF1ab/nsp3325V325LGttCtt22B.1.20.000018
ORF1ab/nsp3325V325FGttTtt22B.1.220.002635
ORF1ab/nsp3325V325IGttAtt22B.1.2210.000142
ORF1ab/nsp3325V325FGttTtt22B.1.2340.000264
ORF1ab/nsp3325V325FGttTtt22B.1.2390.002442
ORF1ab/nsp3325V325FGttTtt22B.1.258.170.000208
ORF1ab/nsp3325V325FGttTtt22B.1.3110.000549
ORF1ab/nsp3325V325IGttAtt22B.1.3510.000059
ORF1ab/nsp3325V325AgTtgCt22B.1.3510.000059
ORF1ab/nsp3325V325FGttTtt22B.1.4430.009346
ORF1ab/nsp3325V325FGttTtt22B.1.4800.004975
ORF1ab/nsp3325V325FGttTtt22B.1.5240.002813
ORF1ab/nsp3325V325IGttAtt22B.1.5960.000174
ORF1ab/nsp3325V325delGTT---22B.1.5960.000174
ORF1ab/nsp3325V325FGttTtt22B.1.5960.000174
ORF1ab/nsp3325V325LGttCtt22B.1.617.20.000008
ORF1ab/nsp3325V325delGTT---22B.1.617.20.000008
ORF1ab/nsp3325V325FGttTtt22B.1.6190.001742
ORF1ab/nsp3325V325delGTT---22C.370.000232
ORF1ab/nsp3325V325IGttAtt22D.20.00015
ORF1ab/nsp3325V325delGTT---22N.60.014184
ORF1ab/nsp3325V325FGttTtt22P.1.150.000465
ORF1ab/nsp3325V325delGTT---22P.1.70.000639
ORF1ab/nsp3325V325FGttTtt22P.70.008734
ORF1ab/nsp3325V325LGttCtt11A0.000387
ORF1ab/nsp3325V325IGttAtt11A.20.000662
ORF1ab/nsp3325V325DgTtgAt11A.20.000662
ORF1ab/nsp3325V325FGttTtt11A.2.40.003367
ORF1ab/nsp3325V325VgtTgtC11A.2.40.003367
ORF1ab/nsp3325V325IGttAtt11A.2.40.003367
ORF1ab/nsp3325V325TGTtACt11All0
ORF1ab/nsp3325V325del2gTTg--11All0
ORF1ab/nsp3325V325FGttTtt11AP.10.001502
ORF1ab/nsp3325V325VgtTgtC11AY.1020.000027
ORF1ab/nsp3325V325VgtTgtA11AY.1030.000006
ORF1ab/nsp3325V325FGttTtt11AY.1060.000335
ORF1ab/nsp3325V325FGttTtt11AY.1090.00074
ORF1ab/nsp3325V325AgTtgCt11AY.1100.000113
ORF1ab/nsp3325V325FGttTtt11AY.1110.000183
ORF1ab/nsp3325V325FGttTtt11AY.1130.000142
ORF1ab/nsp3325V325DgTtgAt11AY.1130.000142
ORF1ab/nsp3325V325FGttTtt11AY.1140.000231
ORF1ab/nsp3325V325VgtTgtA11AY.1160.000287
ORF1ab/nsp3325V325FGttTtt11AY.116.10.000311
ORF1ab/nsp3325V325AgTtgCt11AY.1170.000085
ORF1ab/nsp3325V325delGTT---11AY.1190.000035
ORF1ab/nsp3325V325IGttAtt11AY.1190.000035
ORF1ab/nsp3325V325FGttTtt11AY.120.000316
ORF1ab/nsp3325V325VgtTgtC11AY.1200.000037
ORF1ab/nsp3325V325delGTT---11AY.1200.000037
ORF1ab/nsp3325V325FGttTtt11AY.130.000161
ORF1ab/nsp3325V325delGTT---11AY.230.00007
ORF1ab/nsp3325V325delGTT---11AY.240.000431
ORF1ab/nsp3325V325delGTT---11AY.260.000028
ORF1ab/nsp3325V325IGttAtt11AY.260.000028
ORF1ab/nsp3325V325VgtTgtC11AY.290.000016
ORF1ab/nsp3325V325LGttCtt11AY.290.000016
ORF1ab/nsp3325V325IGttAtt11AY.30.00001
ORF1ab/nsp3325V325VgtTgtC11AY.3.10.000085
ORF1ab/nsp3325V325FGttTtt11AY.320.000532
ORF1ab/nsp3325V325VgtTgtC11AY.320.000532
ORF1ab/nsp3325V325VgtTgtG11AY.360.000148
ORF1ab/nsp3325V325FGttTtt11AY.380.000499
ORF1ab/nsp3325V325AgTtgCt11AY.39.10.00004
ORF1ab/nsp3325V325IGttAtt11AY.39.10.00004
ORF1ab/nsp3325V325delGTT---11AY.40.000002
ORF1ab/nsp3325V325LGttCtt11AY.40.000002
ORF1ab/nsp3325V325VgtTgtC11AY.4.20.000022
ORF1ab/nsp3325V325FGttTtt11AY.4.30.000842
ORF1ab/nsp3325V325FGttTtt11AY.400.000964
ORF1ab/nsp3325V325FGttTtt11AY.410.000294
ORF1ab/nsp3325V325VgtTgtG11AY.430.000004
ORF1ab/nsp3325V325delGTT---11AY.440.000006
ORF1ab/nsp3325V325VgtTgtC11AY.440.000006
ORF1ab/nsp3325V325FGttTtt11AY.46.30.000934
ORF1ab/nsp3325V325GgTtgGt11AY.46.40.000165
ORF1ab/nsp3325V325FGttTtt11AY.46.50.000198
ORF1ab/nsp3325V325AgTtgCt11AY.50.000021
ORF1ab/nsp3325V325VgtTgtA11AY.5.40.000277
ORF1ab/nsp3325V325FGttTtt11AY.530.000288
ORF1ab/nsp3325V325IGttAtt11AY.540.000095
ORF1ab/nsp3325V325FGttTtt11AY.560.001605
ORF1ab/nsp3325V325FGttTtt11AY.570.000656
ORF1ab/nsp3325V325FGttTtt11AY.590.00053
ORF1ab/nsp3325V325IGttAtt11AY.60.000041
ORF1ab/nsp3325V325AgTtgCt11AY.60.000041
ORF1ab/nsp3325V325IGttAtt11AY.610.000105
ORF1ab/nsp3325V325AgTtgCt11AY.70.000196
ORF1ab/nsp3325V325VgtTgtC11AY.700.000209
ORF1ab/nsp3325V325VgtTgtA11AY.750.000056
ORF1ab/nsp3325V325IGttAtt11AY.750.000056
ORF1ab/nsp3325V325IGttAtt11AY.75.10.00018
ORF1ab/nsp3325V325FGttTtt11AY.770.001127
ORF1ab/nsp3325V325delGTT---11AY.840.000437
ORF1ab/nsp3325V325FGttTtt11AY.930.000273
ORF1ab/nsp3325V325FGttTtt11AY.990.001049
ORF1ab/nsp3325V325IGtTAtC11AY.990.001049
ORF1ab/nsp3325V325DgTtgAt11B.10.000009
ORF1ab/nsp3325V325VgtTgtC11B.1.10.000018
ORF1ab/nsp3325V325FGttTtt11B.1.1.1210.002427
ORF1ab/nsp3325V325FGttTtt11B.1.1.1370.0125
ORF1ab/nsp3325V325VgtTgtG11B.1.1.1570.000913
ORF1ab/nsp3325V325FGttTtt11B.1.1.1760.000439
ORF1ab/nsp3325V325AgTtgCt11B.1.1.1770.019231
ORF1ab/nsp3325V325IGttAtt11B.1.1.1900.05
ORF1ab/nsp3325V325FGttTtt11B.1.1.2160.00089
ORF1ab/nsp3325V325IGttAtt11B.1.1.2220.000204
ORF1ab/nsp3325V325VgtTgtC11B.1.1.2270.004348
ORF1ab/nsp3325V325FGttTtt11B.1.1.2430.004082
ORF1ab/nsp3325V325FGttTtt11B.1.1.2940.001266
ORF1ab/nsp3325V325delGTT---11B.1.1.3060.000438
ORF1ab/nsp3325V325FGttTtt11B.1.1.3160.000925
ORF1ab/nsp3325V325FGttTtt11B.1.1.330.000421
ORF1ab/nsp3325V325delGTT---11B.1.1.330.000421
ORF1ab/nsp3325V325FGttTtt11B.1.1.3340.016393
ORF1ab/nsp3325V325FGttTtt11B.1.1.3450.043478
ORF1ab/nsp3325V325delGTT---11B.1.1.3480.000796
ORF1ab/nsp3325V325FGttTtt11B.1.1.3810.04
ORF1ab/nsp3325V325IGttAtt11B.1.1.3980.003226
ORF1ab/nsp3325V325FGttTtt11B.1.1.4090.002833
ORF1ab/nsp3325V325FGttTtt11B.1.1.4160.000905
ORF1ab/nsp3325V325FGttTtt11B.1.1.4170.002703
ORF1ab/nsp3325V325IGttAtt11B.1.1.4450.037037
ORF1ab/nsp3325V325FGttTtt11B.1.1.510.001718
ORF1ab/nsp3325V325VgtTgtC11B.1.1.5190.00004
ORF1ab/nsp3325V325VgtTgtC11B.1.1.5260.003546
ORF1ab/nsp3325V325delGTT---11B.1.110.30.000718
ORF1ab/nsp3325V325FGttTtt11B.1.130.002375
ORF1ab/nsp3325V325VgtTgtC11B.1.1390.000733
ORF1ab/nsp3325V325FGttTtt11B.1.1470.000756
ORF1ab/nsp3325V325AgTtgCt11B.1.160.140.002119
ORF1ab/nsp3325V325IGttAtt11B.1.1770.000013
ORF1ab/nsp3325V325VgtTgtC11B.1.1770.000013
ORF1ab/nsp3325V325FGttTtt11B.1.177.170.000821
ORF1ab/nsp3325V325AgTtgCt11B.1.177.210.000076
ORF1ab/nsp3325V325FGttTtt11B.1.177.210.000076
ORF1ab/nsp3325V325FGttTtt11B.1.177.40.000211
ORF1ab/nsp3325V325IGttAtt11B.1.177.440.000519
ORF1ab/nsp3325V325FGttTtt11B.1.177.460.000918
ORF1ab/nsp3325V325FGttTtt11B.1.177.500.004695
ORF1ab/nsp3325V325FGttTtt11B.1.177.510.004566
ORF1ab/nsp3325V325VgtTgtC11B.1.177.730.000566
ORF1ab/nsp3325V325FGttTtt11B.1.177.750.001041
ORF1ab/nsp3325V325IGttAtt11B.1.177.810.000189
ORF1ab/nsp3325V325LGttCtt11B.1.177.870.000728
ORF1ab/nsp3325V325FGttTtt11B.1.177.870.000728
ORF1ab/nsp3325V325FGttTtt11B.1.1820.007246
ORF1ab/nsp3325V325AgTtgCt11B.1.20.000009
ORF1ab/nsp3325V325FGttTtt11B.1.2100.002132
ORF1ab/nsp3325V325FGttTtt11B.1.214.30.007143
ORF1ab/nsp3325V325delGTT---11B.1.2180.005155
ORF1ab/nsp3325V325GgTtgGt11B.1.2210.000071
ORF1ab/nsp3325V325IGttAtt11B.1.2340.000132
ORF1ab/nsp3325V325AgTtgCt11B.1.2400.000216
ORF1ab/nsp3325V325AgTtgCt11B.1.2430.00007
ORF1ab/nsp3325V325FGttTtt11B.1.258.40.003448
ORF1ab/nsp3325V325AgTtgCt11B.1.2650.001271
ORF1ab/nsp3325V325del2gTTg--11B.1.3110.000275
ORF1ab/nsp3325V325AgTtgCt11B.1.3320.003497
ORF1ab/nsp3325V325LGttCtt11B.1.3370.005587
ORF1ab/nsp3325V325FGttTtt11B.1.351.20.000303
ORF1ab/nsp3325V325IGttAtt11B.1.360.000146
ORF1ab/nsp3325V325delGTT---11B.1.360.000146
ORF1ab/nsp3325V325FGttTtt11B.1.36.10.00114
ORF1ab/nsp3325V325FGttTtt11B.1.36.380.001642
ORF1ab/nsp3325V325FGttTtt11B.1.36.80.001
ORF1ab/nsp3325V325FGttTtt11B.1.3670.000792
ORF1ab/nsp3325V325FGttTtt11B.1.3690.000285
ORF1ab/nsp3325V325IGttAtt11B.1.3700.008
ORF1ab/nsp3325V325FGttTtt11B.1.3780.006849
ORF1ab/nsp3325V325FGttTtt11B.1.4010.008197
ORF1ab/nsp3325V325VgtTgtC11B.1.4290.000024
ORF1ab/nsp3325V325IGttAtt11B.1.4290.000024
ORF1ab/nsp3325V325delGTT---11B.1.4290.000024
ORF1ab/nsp3325V325FGttTtt11B.1.4360.001029
ORF1ab/nsp3325V325delGTT---11B.1.438.10.000107
ORF1ab/nsp3325V325FGttTtt11B.1.438.10.000107
ORF1ab/nsp3325V325VgtTgtA11B.1.4590.004082
ORF1ab/nsp3325V325FGttTtt11B.1.466.20.000391
ORF1ab/nsp3325V325IGttAtt11B.1.466.20.000391
ORF1ab/nsp3325V325FGttTtt11B.1.4700.001404
ORF1ab/nsp3325V325FGttTtt11B.1.5030.002488
ORF1ab/nsp3325V325IGttAtt11B.1.5090.000866
ORF1ab/nsp3325V325IGttAtt11B.1.5260.000024
ORF1ab/nsp3325V325FGttTtt11B.1.5300.007143
ORF1ab/nsp3325V325IGttAtt11B.1.5610.000397
ORF1ab/nsp3325V325FGttTtt11B.1.564.10.001577
ORF1ab/nsp3325V325FGttTtt11B.1.5650.00081
ORF1ab/nsp3325V325IGttAtt11B.1.5750.000303
ORF1ab/nsp3325V325FGttTtt11B.1.5750.000303
ORF1ab/nsp3325V325FGttTtt11B.1.5800.004065
ORF1ab/nsp3325V325AgTtgCt11B.1.5950.000261
ORF1ab/nsp3325V325VgtTgtC11B.1.5950.000261
ORF1ab/nsp3325V325VgtTgtG11B.1.5960.000087
ORF1ab/nsp3325V325FGttTtt11B.1.6090.000479
ORF1ab/nsp3325V325FGttTtt11B.1.6120.002653
ORF1ab/nsp3325V325GgTTgGC11B.1.617.20.000004
ORF1ab/nsp3325V325FGttTtt11B.1.6200.000946
ORF1ab/nsp3325V325delGTT---11B.1.6270.00202
ORF1ab/nsp3325V325FGttTtt11B.1.6280.000352
ORF1ab/nsp3325V325FGttTtt11B.1.940.027027
ORF1ab/nsp3325V325FGttTtt11B.260.014706
ORF1ab/nsp3325V325delGTT---11B.570.015152
ORF1ab/nsp3325V325IGttAtt11C.180.002591
ORF1ab/nsp3325V325FGttTtt11C.260.007353
ORF1ab/nsp3325V325FGttTtt11C.270.018519
ORF1ab/nsp3325V325FGttTtt11L.20.011364
ORF1ab/nsp3325V325FGttTtt11L.30.003546
ORF1ab/nsp3325V325FGttTtt11L.40.05
ORF1ab/nsp3325V325TGTtACt11P.10.000016
ORF1ab/nsp3325V325delGTT---11P.1.10.000318
ORF1ab/nsp3325V325delGTT---11P.1.130.000898
ORF1ab/nsp3325V325del1gTtg-t11P.1.130.000898
ORF1ab/nsp3325V325FGttTtt11P.1.160.000374
ORF1ab/nsp3325V325IGttAtt11P.1.170.000162
ORF1ab/nsp3325V325FGttTtt11P.1.20.001156
ORF1ab/nsp3325V325FGttTtt11Q.20.000613
ORF1ab/nsp3325V325FGttTtt11Q.80.000165

CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk

CoV-GLUE uses sequence data from GISAID. GISAID data provided via this web application is subject to GISAID's Terms and Conditions.