CoV-GLUEGenomeCountriesLineagesMutationsInsertionsDeletionsUpdated:

CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF1ab/nsp3 : CodonNum = 323 & Codon = caT

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF1ab/nsp3323H323HH1141HsyncaCcaT5236523613686-3688

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF1ab/nsp3323H323HcaCcaT52365236All0.001001
ORF1ab/nsp3323H323HcaCcaT27692769B.1.6280.975687
ORF1ab/nsp3323H323HcaCcaT556556AY.290.00877
ORF1ab/nsp3323H323HcaCcaT408408B.1.1.70.000365
ORF1ab/nsp3323H323HcaCcaT310310AY.430.001373
ORF1ab/nsp3323H323HcaCcaT132132AY.40.000205
ORF1ab/nsp3323H323HcaCcaT125125B.10.001145
ORF1ab/nsp3323H323HcaCcaT8484AY.440.000511
ORF1ab/nsp3323H323HcaCcaT8484B.1.617.20.000316
ORF1ab/nsp3323H323HcaCcaT5858AY.30.000577
ORF1ab/nsp3323H323HcaCcaT4747AY.39.10.001862
ORF1ab/nsp3323H323HcaCcaT4747AY.420.001891
ORF1ab/nsp3323H323HcaCcaT4545AY.1030.000279
ORF1ab/nsp3323H323HcaCcaT3939P.10.000614
ORF1ab/nsp3323H323HcaCcaT3232B.1.5250.003621
ORF1ab/nsp3323H323HcaCcaT2525B.1.20.00022
ORF1ab/nsp3323H323HcaCcaT2525B.1.360.003648
ORF1ab/nsp3323H323HcaCcaT2525B.1.4270.001262
ORF1ab/nsp3323H323HcaCcaT2222B.1.5260.000517
ORF1ab/nsp3323H323HcaCcaT1919B.1.10.000345
ORF1ab/nsp3323H323HcaCcaT1919B.1.1600.000593
ORF1ab/nsp3323H323HcaCcaT1919B.1.1770.00025
ORF1ab/nsp3323H323HcaCcaT1818AY.1020.000477
ORF1ab/nsp3323H323HcaCcaT1818AY.250.000108
ORF1ab/nsp3323H323HcaCcaT1717B.1.4780.2
ORF1ab/nsp3323H323HcaCcaT1111AY.390.000272
ORF1ab/nsp3323H323HcaCcaT88AY.720.010884
ORF1ab/nsp3323H323HcaCcaT88B.1.3110.002197
ORF1ab/nsp3323H323HcaCcaT88B.1.5870.01518
ORF1ab/nsp3323H323HcaCcaT88B.1.617.10.001032
ORF1ab/nsp3323H323HcaCcaT88P.1.120.003872
ORF1ab/nsp3323H323HcaCcaT77AY.1190.000247
ORF1ab/nsp3323H323HcaCcaT77AY.160.002658
ORF1ab/nsp3323H323HcaCcaT77AY.200.000272
ORF1ab/nsp3323H323HcaCcaT77AY.260.000198
ORF1ab/nsp3323H323HcaCcaT77AY.60.000288
ORF1ab/nsp3323H323HcaCcaT77B.1.4290.000165
ORF1ab/nsp3323H323HcaCcaT66AY.1130.000854
ORF1ab/nsp3323H323HcaCcaT66AY.50.000124
ORF1ab/nsp3323H323HcaCcaT55AY.29.10.001103
ORF1ab/nsp3323H323HcaCcaT55AY.5.30.001687
ORF1ab/nsp3323H323HcaCcaT55B.1.160.120.032051
ORF1ab/nsp3323H323HcaCcaT55B.1.2580.000333
ORF1ab/nsp3323H323HcaCcaT55B.1.3510.000149
ORF1ab/nsp3323H323HcaCcaT55B.1.5960.000436
ORF1ab/nsp3323H323HcaCcaT44AY.270.000259
ORF1ab/nsp3323H323HcaCcaT44AY.4.20.000087
ORF1ab/nsp3323H323HcaCcaT44P.1.150.000929
ORF1ab/nsp3323H323HcaCcaT44P.20.000747
ORF1ab/nsp3323H323HcaCcaT44R.10.00036
ORF1ab/nsp3323H323HcaCcaT33AY.230.000209
ORF1ab/nsp3323H323HcaCcaT33AY.3.10.000256
ORF1ab/nsp3323H323HcaCcaT33AY.340.000291
ORF1ab/nsp3323H323HcaCcaT33AY.4.50.000322
ORF1ab/nsp3323H323HcaCcaT33AY.46.40.000494
ORF1ab/nsp3323H323HcaCcaT33AY.98.10.000145
ORF1ab/nsp3323H323HcaCcaT33B.1.1.5190.000119
ORF1ab/nsp3323H323HcaCcaT33B.1.177.210.000229
ORF1ab/nsp3323H323HcaCcaT33B.1.2210.000213
ORF1ab/nsp3323H323HcaCcaT33B.1.2340.000396
ORF1ab/nsp3323H323HcaCcaT33B.1.36.180.001261
ORF1ab/nsp3323H323HcaCcaT22AY.1000.000092
ORF1ab/nsp3323H323HcaCcaT22AY.1200.000074
ORF1ab/nsp3323H323HcaCcaT22AY.120.10.000642
ORF1ab/nsp3323H323HcaCcaT22AY.16.10.00094
ORF1ab/nsp3323H323HcaCcaT22AY.240.000862
ORF1ab/nsp3323H323HcaCcaT22AY.330.000134
ORF1ab/nsp3323H323HcaCcaT22AY.450.000243
ORF1ab/nsp3323H323HcaCcaT22AY.46.60.000144
ORF1ab/nsp3323H323HcaCcaT22AY.90.000135
ORF1ab/nsp3323H323HcaCcaT22AY.980.000158
ORF1ab/nsp3323H323HcaCcaT22B.1.1.2220.000408
ORF1ab/nsp3323H323HcaCcaT22B.1.1.3030.005525
ORF1ab/nsp3323H323HcaCcaT22B.1.1.3180.000604
ORF1ab/nsp3323H323HcaCcaT22B.1.1.3480.001592
ORF1ab/nsp3323H323HcaCcaT22B.1.2400.000431
ORF1ab/nsp3323H323HcaCcaT22B.1.4090.001563
ORF1ab/nsp3323H323HcaCcaT22B.1.4320.022472
ORF1ab/nsp3323H323HcaCcaT22B.1.4430.009346
ORF1ab/nsp3323H323HcaCcaT22B.1.466.20.000782
ORF1ab/nsp3323H323HcaCcaT22B.1.5880.00182
ORF1ab/nsp3323H323HcaCcaT22B.1.6270.00404
ORF1ab/nsp3323H323HcaCcaT22Q.80.00033
ORF1ab/nsp3323H323HcaCcaT110.055556
ORF1ab/nsp3323H323HcaCcaT11AY.10.000396
ORF1ab/nsp3323H323HcaCcaT11AY.100.00053
ORF1ab/nsp3323H323HcaCcaT11AY.1080.001103
ORF1ab/nsp3323H323HcaCcaT11AY.1170.000085
ORF1ab/nsp3323H323HcaCcaT11AY.1210.000135
ORF1ab/nsp3323H323HcaCcaT11AY.34.10.00051
ORF1ab/nsp3323H323HcaCcaT11AY.380.000499
ORF1ab/nsp3323H323HcaCcaT11AY.460.000104
ORF1ab/nsp3323H323HcaCcaT11AY.550.000917
ORF1ab/nsp3323H323HcaCcaT11AY.570.000656
ORF1ab/nsp3323H323HcaCcaT11AY.610.000105
ORF1ab/nsp3323H323HcaCcaT11AY.70.000196
ORF1ab/nsp3323H323HcaCcaT11AY.710.000475
ORF1ab/nsp3323H323HcaCcaT11AY.750.000056
ORF1ab/nsp3323H323HcaCcaT11AY.75.10.00018
ORF1ab/nsp3323H323HcaCcaT11AY.760.004831
ORF1ab/nsp3323H323HcaCcaT11AY.790.001211
ORF1ab/nsp3323H323HcaCcaT11AY.9.20.000037
ORF1ab/nsp3323H323HcaCcaT11AY.920.000287
ORF1ab/nsp3323H323HcaCcaT11AY.960.002075
ORF1ab/nsp3323H323HcaCcaT11AY.99.20.000092
ORF1ab/nsp3323H323HcaCcaT11B.1.1.1170.009709
ORF1ab/nsp3323H323HcaCcaT11B.1.1.1410.002012
ORF1ab/nsp3323H323HcaCcaT11B.1.1.170.016667
ORF1ab/nsp3323H323HcaCcaT11B.1.1.250.000569
ORF1ab/nsp3323H323HcaCcaT11B.1.1.2840.000107
ORF1ab/nsp3323H323HcaCcaT11B.1.1.3160.000925
ORF1ab/nsp3323H323HcaCcaT11B.1.1.3330.001076
ORF1ab/nsp3323H323HcaCcaT11B.1.1.370.000193
ORF1ab/nsp3323H323HcaCcaT11B.1.1420.002899
ORF1ab/nsp3323H323HcaCcaT11B.1.1570.002985
ORF1ab/nsp3323H323HcaCcaT11B.1.177.530.002392
ORF1ab/nsp3323H323HcaCcaT11B.1.177.810.000189
ORF1ab/nsp3323H323HcaCcaT11B.1.177.820.000477
ORF1ab/nsp3323H323HcaCcaT11B.1.2320.000537
ORF1ab/nsp3323H323HcaCcaT11B.1.2390.001221
ORF1ab/nsp3323H323HcaCcaT11B.1.2430.00007
ORF1ab/nsp3323H323HcaCcaT11B.1.2470.014925
ORF1ab/nsp3323H323HcaCcaT11B.1.36.170.000494
ORF1ab/nsp3323H323HcaCcaT11B.1.36.260.002857
ORF1ab/nsp3323H323HcaCcaT11B.1.36.280.005747
ORF1ab/nsp3323H323HcaCcaT11B.1.3960.000706
ORF1ab/nsp3323H323HcaCcaT11B.1.438.10.000107
ORF1ab/nsp3323H323HcaCcaT11B.1.4530.003236
ORF1ab/nsp3323H323HcaCcaT11B.1.4700.001404
ORF1ab/nsp3323H323HcaCcaT11B.1.5610.000397
ORF1ab/nsp3323H323HcaCcaT11B.1.564.10.001577
ORF1ab/nsp3323H323HcaCcaT11B.1.5750.000303
ORF1ab/nsp3323H323HcaCcaT11B.1.6250.002353
ORF1ab/nsp3323H323HcaCcaT11B.1.80.001972
ORF1ab/nsp3323H323HcaCcaT11B.1.9.40.006135
ORF1ab/nsp3323H323HcaCcaT11B.400.000364
ORF1ab/nsp3323H323HcaCcaT11C.370.000116
ORF1ab/nsp3323H323HcaCcaT11D.20.000075
ORF1ab/nsp3323H323HcaCcaT11N.10.016949
ORF1ab/nsp3323H323HcaCcaT11P.1.130.000898
ORF1ab/nsp3323H323HcaCcaT11P.1.140.000048
ORF1ab/nsp3323H323HcaCcaT11P.1.170.000162
ORF1ab/nsp3323H323HcaCcaT11Q.30.000145
ORF1ab/nsp3323H323HcaCcaT11Q.40.000455

CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk

CoV-GLUE uses sequence data from GISAID. GISAID data provided via this web application is subject to GISAID's Terms and Conditions.