CoV-GLUEGenomeCountriesLineagesMutationsInsertionsDeletionsUpdated:

CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF1ab/nsp3 : CodonNum = 323

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF1ab/nsp3323H323HH1141HsyncaCcaT5236523613686-3688
ORF1ab/nsp3323H323YH1141YnonsynCacTac106810650.9971913686-3688
ORF1ab/nsp3323H323YH1141YnonsynCaCTaT106830.002808993686-3688
ORF1ab/nsp3323H323NH1141NnonsynCacAac3073060.9967433686-3688
ORF1ab/nsp3323H323NH1141NnonsynCaCAaT30710.003257333686-3688
ORF1ab/nsp3323H323RH1141RnonsyncAccGc2102060.9809523686-3688
ORF1ab/nsp3323H323RH1141RnonsyncACcGT21020.009523813686-3688
ORF1ab/nsp3323H323RH1141RnonsynCACAGA21010.00476193686-3688
ORF1ab/nsp3323H323RH1141RnonsyncACcGG21010.00476193686-3688
ORF1ab/nsp3323H323QH1141QnonsyncaCcaA1411210.8581563686-3688
ORF1ab/nsp3323H323QH1141QnonsyncaCcaG141200.1418443686-3688
ORF1ab/nsp3323H323delH1141deldelCAC---10810813686-3688
ORF1ab/nsp3323H323LH1141LnonsyncAccTc430.753686-3688
ORF1ab/nsp3323H323LH1141LnonsyncACcTT410.253686-3688
ORF1ab/nsp3323H323XH1141XnonsynCaCTaA320.6666673686-3688
ORF1ab/nsp3323H323FH1141FnonsynCAcTTc320.6666673686-3688
ORF1ab/nsp3323H323del1H1141del1delcAcc-c310.3333333686-3688
ORF1ab/nsp3323H323del1H1141del1delcaCca-310.3333333686-3688
ORF1ab/nsp3323H323del1H1141del1delCac-ac310.3333333686-3688
ORF1ab/nsp3323H323XH1141XnonsynCaCTaG310.3333333686-3688
ORF1ab/nsp3323H323FH1141FnonsynCACTTT310.3333333686-3688
ORF1ab/nsp3323H323PH1141PnonsyncACcCT2213686-3688
ORF1ab/nsp3323H323SH1141SnonsynCACTCG210.53686-3688
ORF1ab/nsp3323H323SH1141SnonsynCACTCA210.53686-3688
ORF1ab/nsp3323H323TH1141TnonsynCACACG210.53686-3688
ORF1ab/nsp3323H323TH1141TnonsynCACACA210.53686-3688
ORF1ab/nsp3323H323KH1141KnonsynCaCAaG210.53686-3688
ORF1ab/nsp3323H323KH1141KnonsynCaCAaA210.53686-3688
ORF1ab/nsp3323H323DH1141DnonsynCacGac1113686-3688
ORF1ab/nsp3323H323EH1141EnonsynCaCGaA1113686-3688
ORF1ab/nsp3323H323del2H1141del2delCAc--c1113686-3688

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF1ab/nsp3323H323HcaCcaT52365236All0.001001
ORF1ab/nsp3323H323HcaCcaT27692769B.1.6280.975687
ORF1ab/nsp3323H323YCacTac10651068All0.000204
ORF1ab/nsp3323H323YCaCTaT31068All0.000001
ORF1ab/nsp3323H323HcaCcaT556556AY.290.00877
ORF1ab/nsp3323H323YCacTac494494B.1.1.70.000442
ORF1ab/nsp3323H323HcaCcaT408408B.1.1.70.000365
ORF1ab/nsp3323H323HcaCcaT310310AY.430.001373
ORF1ab/nsp3323H323NCacAac306307All0.000059
ORF1ab/nsp3323H323NCaCAaT1307All0
ORF1ab/nsp3323H323RcAccGc206210All0.000039
ORF1ab/nsp3323H323RcACcGT2210All0
ORF1ab/nsp3323H323RcACcGG1210All0
ORF1ab/nsp3323H323RCACAGA1210All0
ORF1ab/nsp3323H323QcaCcaA121141All0.000023
ORF1ab/nsp3323H323QcaCcaG20141All0.000004
ORF1ab/nsp3323H323HcaCcaT132132AY.40.000205
ORF1ab/nsp3323H323RcAccGc129129AY.1190.004555
ORF1ab/nsp3323H323HcaCcaT125125B.10.001145
ORF1ab/nsp3323H323delCAC---108108All0.000021
ORF1ab/nsp3323H323YCacTac9192B.1.617.20.000343
ORF1ab/nsp3323H323YCaCTaT192B.1.617.20.000004
ORF1ab/nsp3323H323HcaCcaT8484AY.440.000511
ORF1ab/nsp3323H323HcaCcaT8484B.1.617.20.000316
ORF1ab/nsp3323H323YCacTac7070AY.40.000109
ORF1ab/nsp3323H323YCacTac6161B.1.20.000537
ORF1ab/nsp3323H323HcaCcaT5858AY.30.000577
ORF1ab/nsp3323H323NCacAac5050B.1.1.70.000045
ORF1ab/nsp3323H323HcaCcaT4747AY.39.10.001862
ORF1ab/nsp3323H323HcaCcaT4747AY.420.001891
ORF1ab/nsp3323H323HcaCcaT4545AY.1030.000279
ORF1ab/nsp3323H323QcaCcaA4242B.1.4290.000988
ORF1ab/nsp3323H323HcaCcaT3939P.10.000614
ORF1ab/nsp3323H323NCacAac3737B.1.617.20.000139
ORF1ab/nsp3323H323YCacTac3232AY.1020.000848
ORF1ab/nsp3323H323HcaCcaT3232B.1.5250.003621
ORF1ab/nsp3323H323YCacTac2929AY.1030.00018
ORF1ab/nsp3323H323YCacTac2828B.1.1.390.014271
ORF1ab/nsp3323H323NCacAac2828Q.10.003537
ORF1ab/nsp3323H323QcaCcaA2626AY.440.000158
ORF1ab/nsp3323H323HcaCcaT2525B.1.20.00022
ORF1ab/nsp3323H323YCacTac2525B.1.258.170.002599
ORF1ab/nsp3323H323HcaCcaT2525B.1.360.003648
ORF1ab/nsp3323H323HcaCcaT2525B.1.4270.001262
ORF1ab/nsp3323H323HcaCcaT2222B.1.5260.000517
ORF1ab/nsp3323H323NCacAac2121B.1.5260.000494
ORF1ab/nsp3323H323delCAC---2121P.1.150.004879
ORF1ab/nsp3323H323NCacAac2020AY.1030.000124
ORF1ab/nsp3323H323NCacAac2020AY.430.000089
ORF1ab/nsp3323H323HcaCcaT1919B.1.10.000345
ORF1ab/nsp3323H323HcaCcaT1919B.1.1600.000593
ORF1ab/nsp3323H323HcaCcaT1919B.1.1770.00025
ORF1ab/nsp3323H323HcaCcaT1818AY.1020.000477
ORF1ab/nsp3323H323HcaCcaT1818AY.250.000108
ORF1ab/nsp3323H323YCacTac1717B.10.000156
ORF1ab/nsp3323H323RcAccGc1617B.10.000147
ORF1ab/nsp3323H323RCACAGA117B.10.000009
ORF1ab/nsp3323H323HcaCcaT1717B.1.4780.2
ORF1ab/nsp3323H323delCAC---1616P.10.000252
ORF1ab/nsp3323H323YCacTac1515B.1.1.871
ORF1ab/nsp3323H323QcaCcaG1515B.1.6210.001328
ORF1ab/nsp3323H323QcaCcaA1414AY.1100.001578
ORF1ab/nsp3323H323NCacAac1313AY.250.000078
ORF1ab/nsp3323H323NCacAac1313AY.98.10.00063
ORF1ab/nsp3323H323YCacTac1212AY.250.000072
ORF1ab/nsp3323H323NCacAac1212AY.40.000019
ORF1ab/nsp3323H323YCacTac1212AY.440.000073
ORF1ab/nsp3323H323HcaCcaT1111AY.390.000272
ORF1ab/nsp3323H323RcAccGc1111B.1.1.70.00001
ORF1ab/nsp3323H323YCacTac1111B.1.177.210.000841
ORF1ab/nsp3323H323RcAccGc1111B.1.617.20.000041
ORF1ab/nsp3323H323delCAC---1010P.1.120.00484
ORF1ab/nsp3323H323YCacTac99AY.30.00009
ORF1ab/nsp3323H323YCacTac99AY.470.00028
ORF1ab/nsp3323H323YCacTac99AY.580.008167
ORF1ab/nsp3323H323QcaCcaA99B.1.1.70.000008
ORF1ab/nsp3323H323NCacAac99B.1.20.000079
ORF1ab/nsp3323H323YCacTac99B.1.3690.002567
ORF1ab/nsp3323H323YCacTac88AY.430.000035
ORF1ab/nsp3323H323HcaCcaT88AY.720.010884
ORF1ab/nsp3323H323delCAC---88B.10.000073
ORF1ab/nsp3323H323YCacTac88B.1.1.5190.000318
ORF1ab/nsp3323H323HcaCcaT88B.1.3110.002197
ORF1ab/nsp3323H323HcaCcaT88B.1.5870.01518
ORF1ab/nsp3323H323HcaCcaT88B.1.617.10.001032
ORF1ab/nsp3323H323HcaCcaT88P.1.120.003872
ORF1ab/nsp3323H323HcaCcaT77AY.1190.000247
ORF1ab/nsp3323H323HcaCcaT77AY.160.002658
ORF1ab/nsp3323H323HcaCcaT77AY.200.000272
ORF1ab/nsp3323H323HcaCcaT77AY.260.000198
ORF1ab/nsp3323H323HcaCcaT77AY.60.000288
ORF1ab/nsp3323H323HcaCcaT77B.1.4290.000165
ORF1ab/nsp3323H323RcAccGc66AY.1030.000037
ORF1ab/nsp3323H323HcaCcaT66AY.1130.000854
ORF1ab/nsp3323H323NCacAac66AY.390.000148
ORF1ab/nsp3323H323HcaCcaT66AY.50.000124
ORF1ab/nsp3323H323YCacTac66AY.9.10.000502
ORF1ab/nsp3323H323QcaCcaA66B.1.1.3320.1875
ORF1ab/nsp3323H323delCAC---66B.1.1.70.000005
ORF1ab/nsp3323H323YCacTac66B.1.1600.000187
ORF1ab/nsp3323H323YCacTac66B.1.5260.000141
ORF1ab/nsp3323H323NCacAac55AY.1020.000133
ORF1ab/nsp3323H323YCacTac55AY.1200.000186
ORF1ab/nsp3323H323HcaCcaT55AY.29.10.001103
ORF1ab/nsp3323H323NCacAac55AY.440.00003
ORF1ab/nsp3323H323HcaCcaT55AY.5.30.001687
ORF1ab/nsp3323H323NCacAac55B.10.000046
ORF1ab/nsp3323H323YCacTac55B.1.10.000091
ORF1ab/nsp3323H323HcaCcaT55B.1.160.120.032051
ORF1ab/nsp3323H323HcaCcaT55B.1.2580.000333
ORF1ab/nsp3323H323HcaCcaT55B.1.3510.000149
ORF1ab/nsp3323H323NCacAac55B.1.3770.022831
ORF1ab/nsp3323H323HcaCcaT55B.1.5960.000436
ORF1ab/nsp3323H323NCacAac55P.10.000079
ORF1ab/nsp3323H323YCacTac45P.10.000063
ORF1ab/nsp3323H323YCaCTaT15P.10.000016
ORF1ab/nsp3323H323NCacAac440.222222
ORF1ab/nsp3323H323LcAccTc34All0.000001
ORF1ab/nsp3323H323LcACcTT14All0
ORF1ab/nsp3323H323HcaCcaT44AY.270.000259
ORF1ab/nsp3323H323HcaCcaT44AY.4.20.000087
ORF1ab/nsp3323H323QcaCcaA24B.10.000018
ORF1ab/nsp3323H323QcaCcaG24B.10.000018
ORF1ab/nsp3323H323RcAccGc44B.1.2430.000278
ORF1ab/nsp3323H323YCacTac44B.1.258.20.018018
ORF1ab/nsp3323H323delCAC---44B.1.6210.000354
ORF1ab/nsp3323H323HcaCcaT44P.1.150.000929
ORF1ab/nsp3323H323HcaCcaT44P.20.000747
ORF1ab/nsp3323H323HcaCcaT44R.10.00036
ORF1ab/nsp3323H323FCAcTTc23All0
ORF1ab/nsp3323H323XCaCTaA23All0
ORF1ab/nsp3323H323del1Cac-ac13All0
ORF1ab/nsp3323H323del1cAcc-c13All0
ORF1ab/nsp3323H323del1caCca-13All0
ORF1ab/nsp3323H323XCaCTaG13All0
ORF1ab/nsp3323H323FCACTTT13All0
ORF1ab/nsp3323H323NCacAac33AY.1190.000106
ORF1ab/nsp3323H323HcaCcaT33AY.230.000209
ORF1ab/nsp3323H323RcAccGc33AY.250.000018
ORF1ab/nsp3323H323HcaCcaT33AY.3.10.000256
ORF1ab/nsp3323H323HcaCcaT33AY.340.000291
ORF1ab/nsp3323H323QcaCcaA33AY.40.000005
ORF1ab/nsp3323H323NCacAac33AY.4.20.000065
ORF1ab/nsp3323H323HcaCcaT33AY.4.50.000322
ORF1ab/nsp3323H323delCAC---33AY.430.000013
ORF1ab/nsp3323H323RcAccGc33AY.430.000013
ORF1ab/nsp3323H323QcaCcaA23AY.430.000009
ORF1ab/nsp3323H323QcaCcaG13AY.430.000004
ORF1ab/nsp3323H323HcaCcaT33AY.46.40.000494
ORF1ab/nsp3323H323YCacTac33AY.630.001161
ORF1ab/nsp3323H323HcaCcaT33AY.98.10.000145
ORF1ab/nsp3323H323QcaCcaA33B.1.10.000054
ORF1ab/nsp3323H323YCacTac33B.1.1.3980.009677
ORF1ab/nsp3323H323HcaCcaT33B.1.1.5190.000119
ORF1ab/nsp3323H323NCacAac33B.1.1600.000094
ORF1ab/nsp3323H323HcaCcaT33B.1.177.210.000229
ORF1ab/nsp3323H323HcaCcaT33B.1.2210.000213
ORF1ab/nsp3323H323HcaCcaT33B.1.2340.000396
ORF1ab/nsp3323H323HcaCcaT33B.1.36.180.001261
ORF1ab/nsp3323H323QcaCcaA33B.1.4270.000151
ORF1ab/nsp3323H323NCacAac33B.1.4270.000151
ORF1ab/nsp3323H323YCacTac33B.60.00273
ORF1ab/nsp3323H323delCAC---33P.1.140.000143
ORF1ab/nsp3323H323YCacTac33P.1.150.000697
ORF1ab/nsp3323H323delCAC---220.111111
ORF1ab/nsp3323H323RcACcGT220.111111
ORF1ab/nsp3323H323PcACcCT220.111111
ORF1ab/nsp3323H323LcAccTc120.055556
ORF1ab/nsp3323H323FCACTTT120.055556
ORF1ab/nsp3323H323YCaCTaT120.055556
ORF1ab/nsp3323H323YCacTac120.055556
ORF1ab/nsp3323H323LcACcTT120.055556
ORF1ab/nsp3323H323FCAcTTc120.055556
ORF1ab/nsp3323H323PcACcCT22All0
ORF1ab/nsp3323H323KCaCAaA12All0
ORF1ab/nsp3323H323KCaCAaG12All0
ORF1ab/nsp3323H323TCACACA12All0
ORF1ab/nsp3323H323SCACTCA12All0
ORF1ab/nsp3323H323TCACACG12All0
ORF1ab/nsp3323H323SCACTCG12All0
ORF1ab/nsp3323H323HcaCcaT22AY.1000.000092
ORF1ab/nsp3323H323YCacTac22AY.1000.000092
ORF1ab/nsp3323H323YCacTac22AY.1140.000462
ORF1ab/nsp3323H323HcaCcaT22AY.1200.000074
ORF1ab/nsp3323H323HcaCcaT22AY.120.10.000642
ORF1ab/nsp3323H323HcaCcaT22AY.16.10.00094
ORF1ab/nsp3323H323YCacTac22AY.230.000139
ORF1ab/nsp3323H323NCacAac22AY.230.000139
ORF1ab/nsp3323H323HcaCcaT22AY.240.000862
ORF1ab/nsp3323H323YCacTac22AY.290.000032
ORF1ab/nsp3323H323NCacAac22AY.30.00002
ORF1ab/nsp3323H323HcaCcaT22AY.330.000134
ORF1ab/nsp3323H323YCacTac22AY.390.000049
ORF1ab/nsp3323H323RcAccGc22AY.40.000003
ORF1ab/nsp3323H323HcaCcaT22AY.450.000243
ORF1ab/nsp3323H323HcaCcaT22AY.46.60.000144
ORF1ab/nsp3323H323YCacTac22AY.480.00093
ORF1ab/nsp3323H323QcaCcaA22AY.50.000041
ORF1ab/nsp3323H323HcaCcaT22AY.90.000135
ORF1ab/nsp3323H323NCacAac22AY.9.10.000167
ORF1ab/nsp3323H323HcaCcaT22AY.980.000158
ORF1ab/nsp3323H323RcACcGG12AY.990.001049
ORF1ab/nsp3323H323RcAccGc12AY.990.001049
ORF1ab/nsp3323H323delCAC---22B.1.10.000036
ORF1ab/nsp3323H323YCacTac22B.1.1.2160.001781
ORF1ab/nsp3323H323HcaCcaT22B.1.1.2220.000408
ORF1ab/nsp3323H323YCacTac22B.1.1.2610.017241
ORF1ab/nsp3323H323HcaCcaT22B.1.1.3030.005525
ORF1ab/nsp3323H323HcaCcaT22B.1.1.3180.000604
ORF1ab/nsp3323H323HcaCcaT22B.1.1.3480.001592
ORF1ab/nsp3323H323RcAccGc22B.1.1.5190.000079
ORF1ab/nsp3323H323KCaCAaA12B.1.1.70.000001
ORF1ab/nsp3323H323XCaCTaA12B.1.1.70.000001
ORF1ab/nsp3323H323SCACTCA12B.1.1.70.000001
ORF1ab/nsp3323H323XCaCTaG12B.1.1.70.000001
ORF1ab/nsp3323H323KCaCAaG12B.1.1.70.000001
ORF1ab/nsp3323H323TCACACA12B.1.1.70.000001
ORF1ab/nsp3323H323TCACACG12B.1.1.70.000001
ORF1ab/nsp3323H323SCACTCG12B.1.1.70.000001
ORF1ab/nsp3323H323YCacTac22B.1.1470.001512
ORF1ab/nsp3323H323YCacTac22B.1.1770.000026
ORF1ab/nsp3323H323YCacTac22B.1.177.810.000379
ORF1ab/nsp3323H323RcAccGc22B.1.20.000018
ORF1ab/nsp3323H323HcaCcaT22B.1.2400.000431
ORF1ab/nsp3323H323HcaCcaT22B.1.4090.001563
ORF1ab/nsp3323H323NCacAac22B.1.4290.000047
ORF1ab/nsp3323H323HcaCcaT22B.1.4320.022472
ORF1ab/nsp3323H323HcaCcaT22B.1.4430.009346
ORF1ab/nsp3323H323HcaCcaT22B.1.466.20.000782
ORF1ab/nsp3323H323HcaCcaT22B.1.5880.00182
ORF1ab/nsp3323H323delCAC---22B.1.5960.000174
ORF1ab/nsp3323H323delCAC---22B.1.617.20.000008
ORF1ab/nsp3323H323HcaCcaT22B.1.6270.00404
ORF1ab/nsp3323H323NCacAac22C.370.000232
ORF1ab/nsp3323H323delCAC---22C.370.000232
ORF1ab/nsp3323H323delCAC---22N.60.014184
ORF1ab/nsp3323H323QcaCcaA22P.10.000032
ORF1ab/nsp3323H323YCacTac22P.1.160.000748
ORF1ab/nsp3323H323delCAC---22P.1.70.000639
ORF1ab/nsp3323H323HcaCcaT22Q.80.00033
ORF1ab/nsp3323H323HcaCcaT110.055556
ORF1ab/nsp3323H323RcAccGc11A0.000387
ORF1ab/nsp3323H323QcaCcaA11A0.000387
ORF1ab/nsp3323H323YCacTac11A.2.50.000499
ORF1ab/nsp3323H323YCacTac11A.2.5.20.001572
ORF1ab/nsp3323H323YCacTac11A.210.00277
ORF1ab/nsp3323H323del2CAc--c11All0
ORF1ab/nsp3323H323DCacGac11All0
ORF1ab/nsp3323H323ECaCGaA11All0
ORF1ab/nsp3323H323YCacTac11AY.10.000396
ORF1ab/nsp3323H323NCacAac11AY.10.000396
ORF1ab/nsp3323H323HcaCcaT11AY.10.000396
ORF1ab/nsp3323H323HcaCcaT11AY.100.00053
ORF1ab/nsp3323H323NCacAac11AY.1000.000046
ORF1ab/nsp3323H323QcaCcaG11AY.1000.000046
ORF1ab/nsp3323H323QcaCcaA11AY.1030.000006
ORF1ab/nsp3323H323RcAccGc11AY.1050.000643
ORF1ab/nsp3323H323HcaCcaT11AY.1080.001103
ORF1ab/nsp3323H323YCacTac11AY.1100.000113
ORF1ab/nsp3323H323LcAccTc11AY.1130.000142
ORF1ab/nsp3323H323HcaCcaT11AY.1170.000085
ORF1ab/nsp3323H323NCacAac11AY.1180.000063
ORF1ab/nsp3323H323delCAC---11AY.1190.000035
ORF1ab/nsp3323H323delCAC---11AY.1200.000037
ORF1ab/nsp3323H323HcaCcaT11AY.1210.000135
ORF1ab/nsp3323H323YCacTac11AY.200.000039
ORF1ab/nsp3323H323NCacAac11AY.200.000039
ORF1ab/nsp3323H323QcaCcaA11AY.230.00007
ORF1ab/nsp3323H323delCAC---11AY.230.00007
ORF1ab/nsp3323H323NCacAac11AY.23.10.000417
ORF1ab/nsp3323H323delCAC---11AY.240.000431
ORF1ab/nsp3323H323delCAC---11AY.260.000028
ORF1ab/nsp3323H323RcAccGc11AY.30.00001
ORF1ab/nsp3323H323QcaCcaA11AY.30.00001
ORF1ab/nsp3323H323YCacTac11AY.300.000396
ORF1ab/nsp3323H323NCacAac11AY.340.000097
ORF1ab/nsp3323H323HcaCcaT11AY.34.10.00051
ORF1ab/nsp3323H323NCacAac11AY.34.10.00051
ORF1ab/nsp3323H323YCacTac11AY.34.10.00051
ORF1ab/nsp3323H323NCacAac11AY.360.000148
ORF1ab/nsp3323H323YCacTac11AY.380.000499
ORF1ab/nsp3323H323HcaCcaT11AY.380.000499
ORF1ab/nsp3323H323RcAccGc11AY.390.000025
ORF1ab/nsp3323H323delCAC---11AY.40.000002
ORF1ab/nsp3323H323YCacTac11AY.4.2.10.000149
ORF1ab/nsp3323H323RcAccGc11AY.4.2.10.000149
ORF1ab/nsp3323H323NCacAac11AY.4.40.000409
ORF1ab/nsp3323H323YCacTac11AY.4.50.000107
ORF1ab/nsp3323H323delCAC---11AY.4.50.000107
ORF1ab/nsp3323H323delCAC---11AY.440.000006
ORF1ab/nsp3323H323YCacTac11AY.450.000122
ORF1ab/nsp3323H323HcaCcaT11AY.460.000104
ORF1ab/nsp3323H323YCacTac11AY.46.20.000635
ORF1ab/nsp3323H323NCacAac11AY.46.40.000165
ORF1ab/nsp3323H323YCacTac11AY.50.000021
ORF1ab/nsp3323H323NCacAac11AY.50.000021
ORF1ab/nsp3323H323NCacAac11AY.5.30.000337
ORF1ab/nsp3323H323YCacTac11AY.540.000095
ORF1ab/nsp3323H323HcaCcaT11AY.550.000917
ORF1ab/nsp3323H323HcaCcaT11AY.570.000656
ORF1ab/nsp3323H323YCacTac11AY.60.000041
ORF1ab/nsp3323H323HcaCcaT11AY.610.000105
ORF1ab/nsp3323H323YCacTac11AY.660.00107
ORF1ab/nsp3323H323HcaCcaT11AY.70.000196
ORF1ab/nsp3323H323YCacTac11AY.7.20.000559
ORF1ab/nsp3323H323YCacTac11AY.710.000475
ORF1ab/nsp3323H323HcaCcaT11AY.710.000475
ORF1ab/nsp3323H323YCacTac11AY.720.001361
ORF1ab/nsp3323H323YCacTac11AY.740.000116
ORF1ab/nsp3323H323NCacAac11AY.750.000056
ORF1ab/nsp3323H323HcaCcaT11AY.750.000056
ORF1ab/nsp3323H323HcaCcaT11AY.75.10.00018
ORF1ab/nsp3323H323HcaCcaT11AY.760.004831
ORF1ab/nsp3323H323HcaCcaT11AY.790.001211
ORF1ab/nsp3323H323NCacAac11AY.840.000437
ORF1ab/nsp3323H323delCAC---11AY.840.000437
ORF1ab/nsp3323H323NCacAac11AY.90.000068
ORF1ab/nsp3323H323HcaCcaT11AY.9.20.000037
ORF1ab/nsp3323H323NCacAac11AY.9.20.000037
ORF1ab/nsp3323H323YCacTac11AY.910.00073
ORF1ab/nsp3323H323NCacAac11AY.920.000287
ORF1ab/nsp3323H323HcaCcaT11AY.920.000287
ORF1ab/nsp3323H323HcaCcaT11AY.960.002075
ORF1ab/nsp3323H323YCacTac11AY.980.000079
ORF1ab/nsp3323H323NCacAac11AY.980.000079
ORF1ab/nsp3323H323YCacTac11AY.98.10.000048
ORF1ab/nsp3323H323YCacTac11AY.990.001049
ORF1ab/nsp3323H323HcaCcaT11AY.99.20.000092
ORF1ab/nsp3323H323NCaCAaT11B0.000128
ORF1ab/nsp3323H323DCacGac11B.10.000009
ORF1ab/nsp3323H323ECaCGaA11B.10.000009
ORF1ab/nsp3323H323XCaCTaA11B.10.000009
ORF1ab/nsp3323H323del1cAcc-c11B.10.000009
ORF1ab/nsp3323H323NCacAac11B.1.10.000018
ORF1ab/nsp3323H323FCAcTTc11B.1.10.000018
ORF1ab/nsp3323H323HcaCcaT11B.1.1.1170.009709
ORF1ab/nsp3323H323HcaCcaT11B.1.1.1410.002012
ORF1ab/nsp3323H323HcaCcaT11B.1.1.170.016667
ORF1ab/nsp3323H323YCacTac11B.1.1.2140.000055
ORF1ab/nsp3323H323HcaCcaT11B.1.1.250.000569
ORF1ab/nsp3323H323YCacTac11B.1.1.2530.002506
ORF1ab/nsp3323H323HcaCcaT11B.1.1.2840.000107
ORF1ab/nsp3323H323delCAC---11B.1.1.3060.000438
ORF1ab/nsp3323H323HcaCcaT11B.1.1.3160.000925
ORF1ab/nsp3323H323delCAC---11B.1.1.330.000421
ORF1ab/nsp3323H323HcaCcaT11B.1.1.3330.001076
ORF1ab/nsp3323H323YCacTac11B.1.1.3360.016667
ORF1ab/nsp3323H323delCAC---11B.1.1.3480.000796
ORF1ab/nsp3323H323HcaCcaT11B.1.1.370.000193
ORF1ab/nsp3323H323NCacAac11B.1.1.3720.000689
ORF1ab/nsp3323H323NCacAac11B.1.1.5190.00004
ORF1ab/nsp3323H323LcAccTc11B.1.1.70.000001
ORF1ab/nsp3323H323delCAC---11B.1.110.30.000718
ORF1ab/nsp3323H323HcaCcaT11B.1.1420.002899
ORF1ab/nsp3323H323HcaCcaT11B.1.1570.002985
ORF1ab/nsp3323H323NCacAac11B.1.1770.000013
ORF1ab/nsp3323H323delCAC---11B.1.1770.000013
ORF1ab/nsp3323H323RcAccGc11B.1.177.160.000664
ORF1ab/nsp3323H323RcAccGc11B.1.177.450.000381
ORF1ab/nsp3323H323HcaCcaT11B.1.177.530.002392
ORF1ab/nsp3323H323RcAccGc11B.1.177.560.000668
ORF1ab/nsp3323H323HcaCcaT11B.1.177.810.000189
ORF1ab/nsp3323H323HcaCcaT11B.1.177.820.000477
ORF1ab/nsp3323H323QcaCcaA11B.1.20.000009
ORF1ab/nsp3323H323del1caCca-11B.1.20.000009
ORF1ab/nsp3323H323delCAC---11B.1.2180.005155
ORF1ab/nsp3323H323HcaCcaT11B.1.2320.000537
ORF1ab/nsp3323H323RcAccGc11B.1.2340.000132
ORF1ab/nsp3323H323HcaCcaT11B.1.2390.001221
ORF1ab/nsp3323H323NCacAac11B.1.2400.000216
ORF1ab/nsp3323H323HcaCcaT11B.1.2430.00007
ORF1ab/nsp3323H323HcaCcaT11B.1.2470.014925
ORF1ab/nsp3323H323YCacTac11B.1.2580.000067
ORF1ab/nsp3323H323RcAccGc11B.1.2650.001271
ORF1ab/nsp3323H323QcaCcaA11B.1.2980.002114
ORF1ab/nsp3323H323YCacTac11B.1.3110.000275
ORF1ab/nsp3323H323YCacTac11B.1.3510.00003
ORF1ab/nsp3323H323RcAccGc11B.1.3510.00003
ORF1ab/nsp3323H323YCacTac11B.1.351.50.0006
ORF1ab/nsp3323H323delCAC---11B.1.360.000146
ORF1ab/nsp3323H323HcaCcaT11B.1.36.170.000494
ORF1ab/nsp3323H323HcaCcaT11B.1.36.260.002857
ORF1ab/nsp3323H323HcaCcaT11B.1.36.280.005747
ORF1ab/nsp3323H323YCacTac11B.1.3610.001289
ORF1ab/nsp3323H323NCacAac11B.1.3670.000792
ORF1ab/nsp3323H323HcaCcaT11B.1.3960.000706
ORF1ab/nsp3323H323RcAccGc11B.1.4290.000024
ORF1ab/nsp3323H323YCacTac11B.1.4290.000024
ORF1ab/nsp3323H323delCAC---11B.1.4290.000024
ORF1ab/nsp3323H323HcaCcaT11B.1.438.10.000107
ORF1ab/nsp3323H323delCAC---11B.1.438.10.000107
ORF1ab/nsp3323H323HcaCcaT11B.1.4530.003236
ORF1ab/nsp3323H323HcaCcaT11B.1.4700.001404
ORF1ab/nsp3323H323YCacTac11B.1.5250.000113
ORF1ab/nsp3323H323NCacAac11B.1.5250.000113
ORF1ab/nsp3323H323YCacTac11B.1.5270.003704
ORF1ab/nsp3323H323HcaCcaT11B.1.5610.000397
ORF1ab/nsp3323H323YCacTac11B.1.5640.000426
ORF1ab/nsp3323H323HcaCcaT11B.1.564.10.001577
ORF1ab/nsp3323H323HcaCcaT11B.1.5750.000303
ORF1ab/nsp3323H323RcAccGc11B.1.5800.004065
ORF1ab/nsp3323H323RcAccGc11B.1.6100.003546
ORF1ab/nsp3323H323YCacTac11B.1.617.10.000129
ORF1ab/nsp3323H323YCacTac11B.1.6200.000946
ORF1ab/nsp3323H323QcaCcaG11B.1.6230.000536
ORF1ab/nsp3323H323HcaCcaT11B.1.6250.002353
ORF1ab/nsp3323H323delCAC---11B.1.6270.00202
ORF1ab/nsp3323H323del1Cac-ac11B.1.6340.003425
ORF1ab/nsp3323H323YCacTac11B.1.6370.000073
ORF1ab/nsp3323H323HcaCcaT11B.1.80.001972
ORF1ab/nsp3323H323HcaCcaT11B.1.9.40.006135
ORF1ab/nsp3323H323HcaCcaT11B.400.000364
ORF1ab/nsp3323H323delCAC---11B.570.015152
ORF1ab/nsp3323H323YCacTac11C.36.30.000567
ORF1ab/nsp3323H323HcaCcaT11C.370.000116
ORF1ab/nsp3323H323NCacAac11D.20.000075
ORF1ab/nsp3323H323HcaCcaT11D.20.000075
ORF1ab/nsp3323H323YCacTac11D.20.000075
ORF1ab/nsp3323H323HcaCcaT11N.10.016949
ORF1ab/nsp3323H323RcAccGc11P.10.000016
ORF1ab/nsp3323H323del2CAc--c11P.10.000016
ORF1ab/nsp3323H323delCAC---11P.1.10.000318
ORF1ab/nsp3323H323YCacTac11P.1.120.000484
ORF1ab/nsp3323H323delCAC---11P.1.130.000898
ORF1ab/nsp3323H323HcaCcaT11P.1.130.000898
ORF1ab/nsp3323H323RcAccGc11P.1.140.000048
ORF1ab/nsp3323H323HcaCcaT11P.1.140.000048
ORF1ab/nsp3323H323HcaCcaT11P.1.170.000162
ORF1ab/nsp3323H323delCAC---11P.1.20.001156
ORF1ab/nsp3323H323HcaCcaT11Q.30.000145
ORF1ab/nsp3323H323HcaCcaT11Q.40.000455
ORF1ab/nsp3323H323QcaCcaA11R.10.00009

CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk

CoV-GLUE uses sequence data from GISAID. GISAID data provided via this web application is subject to GISAID's Terms and Conditions.