CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF1ab/nsp3 : CodonNum = 312

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF1ab/nsp3312L312FL1130FnonsynCttTtt5873587313653-3655
ORF1ab/nsp3312L312LL1130LsynctTctC2221820.819823653-3655
ORF1ab/nsp3312L312LL1130LsynctTctG222310.139643653-3655
ORF1ab/nsp3312L312LL1130LsynctTctA22270.03153153653-3655
ORF1ab/nsp3312L312LL1130LsynCtTTtA22220.009009013653-3655
ORF1ab/nsp3312L312IL1130InonsynCttAtt2152140.9953493653-3655
ORF1ab/nsp3312L312IL1130InonsynCtTAtA21510.004651163653-3655
ORF1ab/nsp3312L312delL1130deldelCTT---10810813653-3655
ORF1ab/nsp3312L312VL1130VnonsynCttGtt656513653-3655
ORF1ab/nsp3312L312PL1130PnonsyncTtcCt383813653-3655
ORF1ab/nsp3312L312HL1130HnonsyncTtcAt282813653-3655
ORF1ab/nsp3312L312RL1130RnonsyncTtcGt212113653-3655
ORF1ab/nsp3312L312del1L1130del1delctTct-1060.63653-3655
ORF1ab/nsp3312L312del1L1130del1delCTT-NN1020.23653-3655
ORF1ab/nsp3312L312del1L1130del1delCtT-tC1010.13653-3655
ORF1ab/nsp3312L312del1L1130del1delcTtc-t1010.13653-3655
ORF1ab/nsp3312L312NL1130NnonsynCTtAAt3313653-3655
ORF1ab/nsp3312L312TL1130TnonsynCTtACt2213653-3655
ORF1ab/nsp3312L312DL1130DnonsynCTtGAt1113653-3655
ORF1ab/nsp3312L312del2L1130del2delCTt--t1113653-3655
ORF1ab/nsp3312L312QL1130QnonsyncTTcAA1113653-3655
ORF1ab/nsp3312L312SL1130SnonsynCTtTCt1113653-3655

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF1ab/nsp3312L312FCttTtt58735873All0.001123
ORF1ab/nsp3312L312FCttTtt867867B.1.1.70.000776
ORF1ab/nsp3312L312FCttTtt853853AY.390.021079
ORF1ab/nsp3312L312FCttTtt472472AY.40.000735
ORF1ab/nsp3312L312FCttTtt359359AY.1030.002229
ORF1ab/nsp3312L312FCttTtt249249B.10.002281
ORF1ab/nsp3312L312LctTctC182222All0.000035
ORF1ab/nsp3312L312LctTctG31222All0.000006
ORF1ab/nsp3312L312LctTctA7222All0.000001
ORF1ab/nsp3312L312LCtTTtA2222All0
ORF1ab/nsp3312L312ICttAtt214215All0.000041
ORF1ab/nsp3312L312ICtTAtA1215All0
ORF1ab/nsp3312L312FCttTtt183183AY.440.001114
ORF1ab/nsp3312L312FCttTtt172172B.1.438.10.018449
ORF1ab/nsp3312L312FCttTtt169169P.1.170.027337
ORF1ab/nsp3312L312FCttTtt166166AY.420.006678
ORF1ab/nsp3312L312FCttTtt158158AY.460.016445
ORF1ab/nsp3312L312FCttTtt141141B.1.617.20.000531
ORF1ab/nsp3312L312FCttTtt125125AY.430.000554
ORF1ab/nsp3312L312FCttTtt122122B.1.20.001074
ORF1ab/nsp3312L312FCttTtt109109B.1.10.001977
ORF1ab/nsp3312L312delCTT---108108All0.000021
ORF1ab/nsp3312L312FCttTtt9898AY.20.0349
ORF1ab/nsp3312L312FCttTtt9292B.1.1600.002869
ORF1ab/nsp3312L312FCttTtt8383P.10.001308
ORF1ab/nsp3312L312FCttTtt8080B.1.4290.001882
ORF1ab/nsp3312L312LctTctC7878AY.40.000121
ORF1ab/nsp3312L312FCttTtt7474AY.270.004789
ORF1ab/nsp3312L312FCttTtt7474B.1.3110.020319
ORF1ab/nsp3312L312FCttTtt6767AY.30.000666
ORF1ab/nsp3312L312FCttTtt6767B.1.1770.000882
ORF1ab/nsp3312L312FCttTtt6666AY.250.000397
ORF1ab/nsp3312L312VCttGtt6565All0.000012
ORF1ab/nsp3312L312LctTctC5759B.1.1.70.000051
ORF1ab/nsp3312L312LctTctG259B.1.1.70.000002
ORF1ab/nsp3312L312FCttTtt5858B.1.2340.007653
ORF1ab/nsp3312L312ICttAtt5252AY.40.000081
ORF1ab/nsp3312L312VCttGtt4848B.1.177.810.009087
ORF1ab/nsp3312L312FCttTtt3939C.36.30.022121
ORF1ab/nsp3312L312PcTtcCt3838All0.000007
ORF1ab/nsp3312L312FCttTtt3636AY.140.003168
ORF1ab/nsp3312L312FCttTtt3535B.1.360.005107
ORF1ab/nsp3312L312FCttTtt3131AY.46.60.002238
ORF1ab/nsp3312L312FCttTtt2929B.1.2430.002018
ORF1ab/nsp3312L312HcTtcAt2828All0.000005
ORF1ab/nsp3312L312ICttAtt2828AY.390.000692
ORF1ab/nsp3312L312FCttTtt2424B.1.1.1070.774194
ORF1ab/nsp3312L312FCttTtt2424C.370.002786
ORF1ab/nsp3312L312FCttTtt2222B.1.3510.000654
ORF1ab/nsp3312L312RcTtcGt2121All0.000004
ORF1ab/nsp3312L312delCTT---2020P.1.150.004647
ORF1ab/nsp3312L312FCttTtt1818AY.340.001745
ORF1ab/nsp3312L312delCTT---1818P.10.000284
ORF1ab/nsp3312L312FCttTtt1717AY.1020.000451
ORF1ab/nsp3312L312FCttTtt1616B.1.1.5190.000635
ORF1ab/nsp3312L312PcTtcCt1616B.1.1.70.000014
ORF1ab/nsp3312L312FCttTtt1616B.1.2210.001137
ORF1ab/nsp3312L312FCttTtt1515AY.200.000583
ORF1ab/nsp3312L312FCttTtt1515B.1.1.4240.681818
ORF1ab/nsp3312L312FCttTtt1515B.1.3690.004278
ORF1ab/nsp3312L312FCttTtt1515B.1.5260.000353
ORF1ab/nsp3312L312FCttTtt1414AE.80.006846
ORF1ab/nsp3312L312FCttTtt1414AY.1190.000494
ORF1ab/nsp3312L312FCttTtt1414AY.260.000396
ORF1ab/nsp3312L312FCttTtt1414AY.46.10.014374
ORF1ab/nsp3312L312FCttTtt1414B.1.2580.000932
ORF1ab/nsp3312L312LctTctC1214P.20.00224
ORF1ab/nsp3312L312LctTctG214P.20.000373
ORF1ab/nsp3312L312HcTtcAt1313B.1.3690.003708
ORF1ab/nsp3312L312ICttAtt1313B.1.617.20.000049
ORF1ab/nsp3312L312FCttTtt1313R.10.00117
ORF1ab/nsp3312L312ICttAtt1212AY.430.000053
ORF1ab/nsp3312L312FCttTtt1212B.1.6210.001062
ORF1ab/nsp3312L312FCttTtt1111B.1.1.500.007468
ORF1ab/nsp3312L312ICttAtt1111B.1.20.000097
ORF1ab/nsp3312L312FCttTtt1111B.1.4160.013959
ORF1ab/nsp3312L312FCttTtt1111B.1.5950.002871
ORF1ab/nsp3312L312del1ctTct-610All0.000001
ORF1ab/nsp3312L312del1CTT-NN210All0
ORF1ab/nsp3312L312del1cTtc-t110All0
ORF1ab/nsp3312L312del1CtT-tC110All0
ORF1ab/nsp3312L312FCttTtt1010AY.1050.006431
ORF1ab/nsp3312L312FCttTtt1010AY.610.001048
ORF1ab/nsp3312L312delCTT---1010P.1.120.00484
ORF1ab/nsp3312L312ICttAtt99AY.30.00009
ORF1ab/nsp3312L312FCttTtt99AY.46.40.001481
ORF1ab/nsp3312L312ICttAtt99B.1.1600.000281
ORF1ab/nsp3312L312FCttTtt99P.20.00168
ORF1ab/nsp3312L312FCttTtt88AY.290.000126
ORF1ab/nsp3312L312FCttTtt88AY.750.000448
ORF1ab/nsp3312L312delCTT---88B.10.000073
ORF1ab/nsp3312L312FCttTtt88B.1.177.620.009535
ORF1ab/nsp3312L312FCttTtt88B.1.36.90.025723
ORF1ab/nsp3312L312FCttTtt88P.1.70.002554
ORF1ab/nsp3312L312FCttTtt77AY.470.000218
ORF1ab/nsp3312L312ICttAtt77AY.540.000667
ORF1ab/nsp3312L312FCttTtt77AY.60.000288
ORF1ab/nsp3312L312FCttTtt77AY.880.006189
ORF1ab/nsp3312L312FCttTtt77AY.98.10.000339
ORF1ab/nsp3312L312FCttTtt77B.1.177.860.001284
ORF1ab/nsp3312L312HcTtcAt77B.1.20.000062
ORF1ab/nsp3312L312FCttTtt77B.1.2400.001509
ORF1ab/nsp3312L312FCttTtt77B.1.466.20.002739
ORF1ab/nsp3312L312FCttTtt77B.1.5960.00061
ORF1ab/nsp3312L312LctTctG47B.1.617.20.000015
ORF1ab/nsp3312L312LctTctC27B.1.617.20.000008
ORF1ab/nsp3312L312LctTctA17B.1.617.20.000004
ORF1ab/nsp3312L312FCttTtt66A.2.5.10.028846
ORF1ab/nsp3312L312ICttAtt66AY.1030.000037
ORF1ab/nsp3312L312ICttAtt66AY.300.002374
ORF1ab/nsp3312L312FCttTtt66AY.4.20.00013
ORF1ab/nsp3312L312FCttTtt66AY.99.20.000553
ORF1ab/nsp3312L312delCTT---66B.1.1.70.000005
ORF1ab/nsp3312L312FCttTtt66B.1.214.20.003597
ORF1ab/nsp3312L312LctTctG56B.1.2430.000348
ORF1ab/nsp3312L312LctTctC16B.1.2430.00007
ORF1ab/nsp3312L312FCttTtt66B.1.30.015707
ORF1ab/nsp3312L312FCttTtt55A.190.04717
ORF1ab/nsp3312L312ICttAtt55AY.1020.000133
ORF1ab/nsp3312L312LctTctC55AY.440.00003
ORF1ab/nsp3312L312FCttTtt55AY.640.002976
ORF1ab/nsp3312L312FCttTtt55AY.810.00996
ORF1ab/nsp3312L312LctTctA55AY.90.000338
ORF1ab/nsp3312L312ICttAtt55B.1.1.2070.00591
ORF1ab/nsp3312L312FCttTtt55B.1.1.2140.000277
ORF1ab/nsp3312L312FCttTtt55B.1.1.3060.002192
ORF1ab/nsp3312L312VCttGtt55B.1.177.820.002387
ORF1ab/nsp3312L312FCttTtt55B.1.2410.004058
ORF1ab/nsp3312L312FCttTtt55B.1.4700.007022
ORF1ab/nsp3312L312FCttTtt55D.20.000375
ORF1ab/nsp3312L312LctTctC240.111111
ORF1ab/nsp3312L312LCtTTtA240.111111
ORF1ab/nsp3312L312ICttAtt44AY.250.000024
ORF1ab/nsp3312L312FCttTtt44AY.450.000487
ORF1ab/nsp3312L312FCttTtt44AY.50.000083
ORF1ab/nsp3312L312FCttTtt44AY.920.001149
ORF1ab/nsp3312L312FCttTtt44B.1.1.10.001307
ORF1ab/nsp3312L312RcTtcGt44B.1.1.2140.000222
ORF1ab/nsp3312L312FCttTtt44B.1.1.3110.001433
ORF1ab/nsp3312L312FCttTtt44B.1.1.5250.021858
ORF1ab/nsp3312L312ICttAtt44B.1.1.630.001543
ORF1ab/nsp3312L312RcTtcGt44B.1.1.70.000004
ORF1ab/nsp3312L312FCttTtt44B.1.3490.002859
ORF1ab/nsp3312L312LctTctC44B.1.5030.00995
ORF1ab/nsp3312L312FCttTtt44B.1.5250.000453
ORF1ab/nsp3312L312PcTtcCt44B.1.5260.000094
ORF1ab/nsp3312L312FCttTtt44B.1.6120.01061
ORF1ab/nsp3312L312FCttTtt44B.1.617.30.01194
ORF1ab/nsp3312L312delCTT---44B.1.6210.000354
ORF1ab/nsp3312L312FCttTtt44B.1.6370.000292
ORF1ab/nsp3312L312FCttTtt44P.1.140.000191
ORF1ab/nsp3312L312FCttTtt44Q.30.00058
ORF1ab/nsp3312L312FCttTtt33A.2.5.20.004717
ORF1ab/nsp3312L312FCttTtt33AD.20.000657
ORF1ab/nsp3312L312NCTtAAt33All0.000001
ORF1ab/nsp3312L312FCttTtt33AP.10.004505
ORF1ab/nsp3312L312LctTctG33AY.1000.000138
ORF1ab/nsp3312L312FCttTtt33AY.1070.001398
ORF1ab/nsp3312L312FCttTtt33AY.1180.000188
ORF1ab/nsp3312L312FCttTtt33AY.120.10.000963
ORF1ab/nsp3312L312FCttTtt33AY.1210.000406
ORF1ab/nsp3312L312RcTtcGt33AY.250.000018
ORF1ab/nsp3312L312LctTctG23AY.250.000012
ORF1ab/nsp3312L312LctTctC13AY.250.000006
ORF1ab/nsp3312L312FCttTtt33AY.360.000445
ORF1ab/nsp3312L312delCTT---33AY.430.000013
ORF1ab/nsp3312L312LctTctG23AY.430.000009
ORF1ab/nsp3312L312LctTctC13AY.430.000004
ORF1ab/nsp3312L312FCttTtt33AY.480.001395
ORF1ab/nsp3312L312PcTtcCt33B.10.000027
ORF1ab/nsp3312L312FCttTtt33B.1.1.2180.023077
ORF1ab/nsp3312L312LctTctG33B.1.1.470.016043
ORF1ab/nsp3312L312del1CTT-NN23B.1.1.70.000002
ORF1ab/nsp3312L312del1cTtc-t13B.1.1.70.000001
ORF1ab/nsp3312L312FCttTtt33B.1.1620.015075
ORF1ab/nsp3312L312FCttTtt33B.1.36.290.001552
ORF1ab/nsp3312L312FCttTtt33B.1.36.370.008333
ORF1ab/nsp3312L312FCttTtt33B.1.4000.001287
ORF1ab/nsp3312L312FCttTtt33B.1.5500.041096
ORF1ab/nsp3312L312FCttTtt33B.1.617.10.000387
ORF1ab/nsp3312L312delCTT---33C.370.000348
ORF1ab/nsp3312L312delCTT---33P.1.140.000143
ORF1ab/nsp3312L312delCTT---33P.1.70.000958
ORF1ab/nsp3312L312PcTtcCt220.111111
ORF1ab/nsp3312L312delCTT---220.111111
ORF1ab/nsp3312L312FCttTtt22A.20.001324
ORF1ab/nsp3312L312TCTtACt22All0
ORF1ab/nsp3312L312FCttTtt22AY.1000.000092
ORF1ab/nsp3312L312FCttTtt22AY.1130.000285
ORF1ab/nsp3312L312VCttGtt22AY.1180.000125
ORF1ab/nsp3312L312ICttAtt22AY.1200.000074
ORF1ab/nsp3312L312FCttTtt22AY.1200.000074
ORF1ab/nsp3312L312FCttTtt22AY.190.002281
ORF1ab/nsp3312L312ICttAtt22AY.200.000078
ORF1ab/nsp3312L312FCttTtt22AY.230.000139
ORF1ab/nsp3312L312PcTtcCt22AY.260.000057
ORF1ab/nsp3312L312LctTctG12AY.39.10.00004
ORF1ab/nsp3312L312LctTctC12AY.39.10.00004
ORF1ab/nsp3312L312ICttAtt22AY.4.20.000043
ORF1ab/nsp3312L312FCttTtt22AY.4.50.000215
ORF1ab/nsp3312L312PcTtcCt22AY.430.000009
ORF1ab/nsp3312L312ICttAtt22AY.440.000012
ORF1ab/nsp3312L312RcTtcGt22AY.46.40.000329
ORF1ab/nsp3312L312FCttTtt22AY.46.50.000397
ORF1ab/nsp3312L312ICttAtt22AY.530.000575
ORF1ab/nsp3312L312FCttTtt22AY.540.000191
ORF1ab/nsp3312L312FCttTtt22AY.620.000871
ORF1ab/nsp3312L312FCttTtt22AY.680.000547
ORF1ab/nsp3312L312FCttTtt22AY.700.000417
ORF1ab/nsp3312L312FCttTtt22AY.75.10.000361
ORF1ab/nsp3312L312FCttTtt22B0.000256
ORF1ab/nsp3312L312LctTctC12B.1.10.000018
ORF1ab/nsp3312L312LctTctG12B.1.10.000018
ORF1ab/nsp3312L312FCttTtt22B.1.1.1570.001826
ORF1ab/nsp3312L312FCttTtt22B.1.1.2200.003717
ORF1ab/nsp3312L312FCttTtt22B.1.1.2220.000408
ORF1ab/nsp3312L312FCttTtt22B.1.1.2320.00363
ORF1ab/nsp3312L312FCttTtt22B.1.1.280.000622
ORF1ab/nsp3312L312FCttTtt22B.1.1.3480.001592
ORF1ab/nsp3312L312LctTctC22B.1.1.3710.020833
ORF1ab/nsp3312L312HcTtcAt22B.1.1.70.000002
ORF1ab/nsp3312L312FCttTtt22B.1.1260.002551
ORF1ab/nsp3312L312FCttTtt22B.1.1270.004396
ORF1ab/nsp3312L312FCttTtt22B.1.1530.037736
ORF1ab/nsp3312L312FCttTtt22B.1.160.160.001859
ORF1ab/nsp3312L312RcTtcGt22B.1.1770.000026
ORF1ab/nsp3312L312LctTctC22B.1.1770.000026
ORF1ab/nsp3312L312FCttTtt22B.1.177.180.00232
ORF1ab/nsp3312L312FCttTtt22B.1.177.230.006472
ORF1ab/nsp3312L312ICttAtt22B.1.177.430.002954
ORF1ab/nsp3312L312FCttTtt22B.1.177.60.001953
ORF1ab/nsp3312L312FCttTtt22B.1.177.90.002663
ORF1ab/nsp3312L312LctTctC22B.1.20.000018
ORF1ab/nsp3312L312RcTtcGt22B.1.20.000018
ORF1ab/nsp3312L312ICttAtt22B.1.2210.000142
ORF1ab/nsp3312L312FCttTtt22B.1.2360.004107
ORF1ab/nsp3312L312FCttTtt22B.1.2370.00995
ORF1ab/nsp3312L312FCttTtt22B.1.2980.004228
ORF1ab/nsp3312L312FCttTtt22B.1.3200.002491
ORF1ab/nsp3312L312ICttAtt22B.1.3510.000059
ORF1ab/nsp3312L312FCttTtt22B.1.36.360.001204
ORF1ab/nsp3312L312FCttTtt22B.1.3800.013245
ORF1ab/nsp3312L312ICttAtt22B.1.4290.000047
ORF1ab/nsp3312L312FCttTtt22B.1.5170.000854
ORF1ab/nsp3312L312ICttAtt22B.1.5260.000047
ORF1ab/nsp3312L312FCttTtt22B.1.5640.000852
ORF1ab/nsp3312L312delCTT---22N.60.014184
ORF1ab/nsp3312L312VCttGtt22P.10.000032
ORF1ab/nsp3312L312ICttAtt22P.10.000032
ORF1ab/nsp3312L312HcTtcAt22P.10.000032
ORF1ab/nsp3312L312del1ctTct-22P.10.000032
ORF1ab/nsp3312L312FCttTtt22P.1.150.000465
ORF1ab/nsp3312L312HcTtcAt110.055556
ORF1ab/nsp3312L312VCttGtt110.055556
ORF1ab/nsp3312L312NCTtAAt110.055556
ORF1ab/nsp3312L312DCTtGAt110.055556
ORF1ab/nsp3312L312ICttAtt110.055556
ORF1ab/nsp3312L312FCttTtt11A.2.20.001689
ORF1ab/nsp3312L312FCttTtt11A.230.010526
ORF1ab/nsp3312L312FCttTtt11AD.2.10.045455
ORF1ab/nsp3312L312FCttTtt11AE.40.043478
ORF1ab/nsp3312L312QcTTcAA11All0
ORF1ab/nsp3312L312SCTtTCt11All0
ORF1ab/nsp3312L312del2CTt--t11All0
ORF1ab/nsp3312L312DCTtGAt11All0
ORF1ab/nsp3312L312VCttGtt11AY.10.000396
ORF1ab/nsp3312L312delCTT---11AY.1000.000046
ORF1ab/nsp3312L312PcTtcCt11AY.1030.000006
ORF1ab/nsp3312L312FCttTtt11AY.1060.000335
ORF1ab/nsp3312L312LctTctG11AY.1170.000085
ORF1ab/nsp3312L312FCttTtt11AY.1170.000085
ORF1ab/nsp3312L312LctTctC11AY.1180.000063
ORF1ab/nsp3312L312delCTT---11AY.1190.000035
ORF1ab/nsp3312L312ICttAtt11AY.1190.000035
ORF1ab/nsp3312L312FCttTtt11AY.120.2.10.000498
ORF1ab/nsp3312L312ICttAtt11AY.1210.000135
ORF1ab/nsp3312L312FCttTtt11AY.16.10.00047
ORF1ab/nsp3312L312HcTtcAt11AY.200.000039
ORF1ab/nsp3312L312delCTT---11AY.230.00007
ORF1ab/nsp3312L312delCTT---11AY.240.000431
ORF1ab/nsp3312L312delCTT---11AY.260.000028
ORF1ab/nsp3312L312ICttAtt11AY.260.000028
ORF1ab/nsp3312L312ICttAtt11AY.270.000065
ORF1ab/nsp3312L312ICttAtt11AY.290.000016
ORF1ab/nsp3312L312VCttGtt11AY.30.00001
ORF1ab/nsp3312L312FCttTtt11AY.300.000396
ORF1ab/nsp3312L312SCTtTCt11AY.300.000396
ORF1ab/nsp3312L312FCttTtt11AY.320.000532
ORF1ab/nsp3312L312FCttTtt11AY.330.000067
ORF1ab/nsp3312L312RcTtcGt11AY.330.000067
ORF1ab/nsp3312L312FCttTtt11AY.380.000499
ORF1ab/nsp3312L312FCttTtt11AY.39.10.00004
ORF1ab/nsp3312L312PcTtcCt11AY.40.000002
ORF1ab/nsp3312L312VCttGtt11AY.40.000002
ORF1ab/nsp3312L312delCTT---11AY.40.000002
ORF1ab/nsp3312L312PcTtcCt11AY.4.20.000022
ORF1ab/nsp3312L312LctTctC11AY.4.40.000409
ORF1ab/nsp3312L312delCTT---11AY.4.50.000107
ORF1ab/nsp3312L312PcTtcCt11AY.420.00004
ORF1ab/nsp3312L312VCttGtt11AY.430.000004
ORF1ab/nsp3312L312NCTtAAt11AY.440.000006
ORF1ab/nsp3312L312RcTtcGt11AY.440.000006
ORF1ab/nsp3312L312delCTT---11AY.440.000006
ORF1ab/nsp3312L312del1ctTct-11AY.440.000006
ORF1ab/nsp3312L312ICttAtt11AY.46.40.000165
ORF1ab/nsp3312L312LctTctC11AY.470.000031
ORF1ab/nsp3312L312LctTctC11AY.490.003195
ORF1ab/nsp3312L312FCttTtt11AY.5.40.000277
ORF1ab/nsp3312L312LctTctC11AY.540.000095
ORF1ab/nsp3312L312LctTctG11AY.550.000917
ORF1ab/nsp3312L312PcTtcCt11AY.610.000105
ORF1ab/nsp3312L312VCttGtt11AY.610.000105
ORF1ab/nsp3312L312LctTctC11AY.650.000533
ORF1ab/nsp3312L312delCTT---11AY.670.000464
ORF1ab/nsp3312L312LctTctC11AY.690.000187
ORF1ab/nsp3312L312FCttTtt11AY.710.000475
ORF1ab/nsp3312L312FCttTtt11AY.740.000116
ORF1ab/nsp3312L312del1ctTct-11AY.840.000437
ORF1ab/nsp3312L312ICttAtt11AY.850.000427
ORF1ab/nsp3312L312LctTctC11AY.880.000884
ORF1ab/nsp3312L312FCttTtt11AY.90.000068
ORF1ab/nsp3312L312FCttTtt11AY.9.10.000084
ORF1ab/nsp3312L312FCttTtt11AY.9.20.000037
ORF1ab/nsp3312L312FCttTtt11AY.910.00073
ORF1ab/nsp3312L312FCttTtt11AY.950.000761
ORF1ab/nsp3312L312FCttTtt11AY.970.001701
ORF1ab/nsp3312L312FCttTtt11AY.980.000079
ORF1ab/nsp3312L312ICttAtt11AY.980.000079
ORF1ab/nsp3312L312delCTT---11AY.990.001049
ORF1ab/nsp3312L312FCttTtt11AZ.50.003509
ORF1ab/nsp3312L312del1ctTct-11B0.000128
ORF1ab/nsp3312L312LctTctC11B.10.000009
ORF1ab/nsp3312L312del2CTt--t11B.10.000009
ORF1ab/nsp3312L312delCTT---11B.1.10.000018
ORF1ab/nsp3312L312NCTtAAt11B.1.10.000018
ORF1ab/nsp3312L312FCttTtt11B.1.1.1010.01
ORF1ab/nsp3312L312ICtTAtA11B.1.1.1530.001095
ORF1ab/nsp3312L312FCttTtt11B.1.1.1530.001095
ORF1ab/nsp3312L312ICttAtt11B.1.1.1760.000439
ORF1ab/nsp3312L312FCttTtt11B.1.1.2070.001182
ORF1ab/nsp3312L312FCttTtt11B.1.1.2690.001353
ORF1ab/nsp3312L312FCttTtt11B.1.1.270.00565
ORF1ab/nsp3312L312ICttAtt11B.1.1.280.000311
ORF1ab/nsp3312L312FCttTtt11B.1.1.2840.000107
ORF1ab/nsp3312L312FCttTtt11B.1.1.2890.002083
ORF1ab/nsp3312L312FCttTtt11B.1.1.2940.001266
ORF1ab/nsp3312L312FCttTtt11B.1.1.3050.003861
ORF1ab/nsp3312L312FCttTtt11B.1.1.3170.000412
ORF1ab/nsp3312L312FCttTtt11B.1.1.3180.000302
ORF1ab/nsp3312L312FCttTtt11B.1.1.3260.001761
ORF1ab/nsp3312L312delCTT---11B.1.1.330.000421
ORF1ab/nsp3312L312delCTT---11B.1.1.3480.000796
ORF1ab/nsp3312L312FCttTtt11B.1.1.3690.000446
ORF1ab/nsp3312L312FCttTtt11B.1.1.370.000193
ORF1ab/nsp3312L312ICttAtt11B.1.1.370.000193
ORF1ab/nsp3312L312FCttTtt11B.1.1.3750.011905
ORF1ab/nsp3312L312FCttTtt11B.1.1.3980.003226
ORF1ab/nsp3312L312FCttTtt11B.1.1.4130.006897
ORF1ab/nsp3312L312FCttTtt11B.1.1.4160.000905
ORF1ab/nsp3312L312HcTtcAt11B.1.1.4160.000905
ORF1ab/nsp3312L312FCttTtt11B.1.1.4320.001266
ORF1ab/nsp3312L312LctTctG11B.1.1.4340.000349
ORF1ab/nsp3312L312ICttAtt11B.1.1.500.000679
ORF1ab/nsp3312L312VCttGtt11B.1.1.70.000001
ORF1ab/nsp3312L312ICttAtt11B.1.1.70.000001
ORF1ab/nsp3312L312FCttTtt11B.1.1030.019231
ORF1ab/nsp3312L312FCttTtt11B.1.1190.010526
ORF1ab/nsp3312L312FCttTtt11B.1.1390.000733
ORF1ab/nsp3312L312FCttTtt11B.1.1570.002985
ORF1ab/nsp3312L312FCttTtt11B.1.160.220.006757
ORF1ab/nsp3312L312delCTT---11B.1.1770.000013
ORF1ab/nsp3312L312FCttTtt11B.1.177.160.000664
ORF1ab/nsp3312L312FCttTtt11B.1.177.20.004545
ORF1ab/nsp3312L312PcTtcCt11B.1.177.210.000076
ORF1ab/nsp3312L312FCttTtt11B.1.177.40.000211
ORF1ab/nsp3312L312ICttAtt11B.1.177.40.000211
ORF1ab/nsp3312L312FCttTtt11B.1.177.510.004566
ORF1ab/nsp3312L312FCttTtt11B.1.177.600.000218
ORF1ab/nsp3312L312PcTtcCt11B.1.177.600.000218
ORF1ab/nsp3312L312FCttTtt11B.1.177.650.000665
ORF1ab/nsp3312L312PcTtcCt11B.1.177.730.000566
ORF1ab/nsp3312L312FCttTtt11B.1.177.730.000566
ORF1ab/nsp3312L312LctTctA11B.1.177.810.000189
ORF1ab/nsp3312L312FCttTtt11B.1.177.830.001481
ORF1ab/nsp3312L312FCttTtt11B.1.1790.003759
ORF1ab/nsp3312L312FCttTtt11B.1.1890.004292
ORF1ab/nsp3312L312del1CtT-tC11B.1.20.000009
ORF1ab/nsp3312L312TCTtACt11B.1.20.000009
ORF1ab/nsp3312L312delCTT---11B.1.20.000009
ORF1ab/nsp3312L312PcTtcCt11B.1.2100.002132
ORF1ab/nsp3312L312delCTT---11B.1.2180.005155
ORF1ab/nsp3312L312FCttTtt11B.1.2320.000537
ORF1ab/nsp3312L312FCttTtt11B.1.2390.001221
ORF1ab/nsp3312L312delCTT---11B.1.2430.00007
ORF1ab/nsp3312L312LctTctG11B.1.258.170.000104
ORF1ab/nsp3312L312FCttTtt11B.1.2650.001271
ORF1ab/nsp3312L312RcTtcGt11B.1.3510.00003
ORF1ab/nsp3312L312LctTctC11B.1.360.000146
ORF1ab/nsp3312L312delCTT---11B.1.360.000146
ORF1ab/nsp3312L312VCttGtt11B.1.360.000146
ORF1ab/nsp3312L312FCttTtt11B.1.36.100.004785
ORF1ab/nsp3312L312FCttTtt11B.1.36.180.00042
ORF1ab/nsp3312L312FCttTtt11B.1.36.310.001751
ORF1ab/nsp3312L312FCttTtt11B.1.36.350.002604
ORF1ab/nsp3312L312RcTtcGt11B.1.3620.001541
ORF1ab/nsp3312L312ICttAtt11B.1.3960.000706
ORF1ab/nsp3312L312FCttTtt11B.1.3960.000706
ORF1ab/nsp3312L312FCttTtt11B.1.3990.001934
ORF1ab/nsp3312L312LctTctG11B.1.4000.000429
ORF1ab/nsp3312L312FCttTtt11B.1.4030.003268
ORF1ab/nsp3312L312FCttTtt11B.1.4270.00005
ORF1ab/nsp3312L312FCttTtt11B.1.4280.00102
ORF1ab/nsp3312L312delCTT---11B.1.4290.000024
ORF1ab/nsp3312L312FCttTtt11B.1.4330.003195
ORF1ab/nsp3312L312HcTtcAt11B.1.438.10.000107
ORF1ab/nsp3312L312ICttAtt11B.1.4590.004082
ORF1ab/nsp3312L312ICttAtt11B.1.4780.011765
ORF1ab/nsp3312L312FCttTtt11B.1.4800.002488
ORF1ab/nsp3312L312FCttTtt11B.1.4970.000315
ORF1ab/nsp3312L312FCttTtt11B.1.5510.00129
ORF1ab/nsp3312L312FCttTtt11B.1.5620.018519
ORF1ab/nsp3312L312FCttTtt11B.1.5650.00081
ORF1ab/nsp3312L312FCttTtt11B.1.5750.000303
ORF1ab/nsp3312L312ICttAtt11B.1.575.10.002439
ORF1ab/nsp3312L312FCttTtt11B.1.575.10.002439
ORF1ab/nsp3312L312FCttTtt11B.1.5760.000907
ORF1ab/nsp3312L312delCTT---11B.1.5960.000087
ORF1ab/nsp3312L312FCttTtt11B.1.6090.000479
ORF1ab/nsp3312L312ICttAtt11B.1.617.10.000129
ORF1ab/nsp3312L312QcTTcAA11B.1.617.20.000004
ORF1ab/nsp3312L312delCTT---11B.1.617.20.000004
ORF1ab/nsp3312L312del1ctTct-11B.1.617.20.000004
ORF1ab/nsp3312L312TCTtACt11B.1.617.20.000004
ORF1ab/nsp3312L312FCttTtt11B.1.6230.000536
ORF1ab/nsp3312L312FCttTtt11B.1.6260.005714
ORF1ab/nsp3312L312FCttTtt11B.1.6270.00202
ORF1ab/nsp3312L312delCTT---11B.1.6270.00202
ORF1ab/nsp3312L312FCttTtt11B.1.80.001972
ORF1ab/nsp3312L312FCttTtt11B.100.008264
ORF1ab/nsp3312L312FCttTtt11B.30.000831
ORF1ab/nsp3312L312FCttTtt11B.450.003831
ORF1ab/nsp3312L312LctTctC11B.60.00091
ORF1ab/nsp3312L312FCttTtt11C.10.002392
ORF1ab/nsp3312L312FCttTtt11C.230.005814
ORF1ab/nsp3312L312FCttTtt11N.60.007092
ORF1ab/nsp3312L312LctTctG11P.10.000016
ORF1ab/nsp3312L312FCttTtt11P.1.10.000318
ORF1ab/nsp3312L312delCTT---11P.1.10.000318
ORF1ab/nsp3312L312delCTT---11P.1.100.000269
ORF1ab/nsp3312L312FCttTtt11P.1.100.000269
ORF1ab/nsp3312L312delCTT---11P.1.130.000898
ORF1ab/nsp3312L312FCttTtt11P.1.160.000374
ORF1ab/nsp3312L312delCTT---11P.1.20.001156
ORF1ab/nsp3312L312ICttAtt11P.1.20.001156
ORF1ab/nsp3312L312FCttTtt11P.1.80.004785
ORF1ab/nsp3312L312FCttTtt11Q.10.000126
ORF1ab/nsp3312L312FCttTtt11Q.70.001111