CoV-GLUE | Mutations | Mutation
Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):
ORF | CodonNum | Mut | ORF1abMut | MutType | RefCodon | MutCodon | AACount | CodonCount | CodonProp | Genome Position |
ORF1ab/nsp3 | 310 | I310T | I1128T | nonsyn | aTt | aCt | 962 | 961 | 0.99896 | 3647-3649 |
ORF1ab/nsp3 | 310 | I310T | I1128T | nonsyn | aTT | aCC | 962 | 1 | 0.0010395 | 3647-3649 |
ORF1ab/nsp3 | 310 | I310V | I1128V | nonsyn | Att | Gtt | 579 | 579 | 1 | 3647-3649 |
ORF1ab/nsp3 | 310 | I310I | I1128I | syn | atT | atC | 225 | 211 | 0.937778 | 3647-3649 |
ORF1ab/nsp3 | 310 | I310I | I1128I | syn | atT | atA | 225 | 14 | 0.0622222 | 3647-3649 |
ORF1ab/nsp3 | 310 | I310L | I1128L | nonsyn | Att | Ctt | 173 | 173 | 1 | 3647-3649 |
ORF1ab/nsp3 | 310 | I310F | I1128F | nonsyn | Att | Ttt | 130 | 129 | 0.992308 | 3647-3649 |
ORF1ab/nsp3 | 310 | I310F | I1128F | nonsyn | AtT | TtC | 130 | 1 | 0.00769231 | 3647-3649 |
ORF1ab/nsp3 | 310 | I310del | I1128del | del | ATT | --- | 110 | 110 | 1 | 3647-3649 |
ORF1ab/nsp3 | 310 | I310S | I1128S | nonsyn | aTt | aGt | 101 | 101 | 1 | 3647-3649 |
ORF1ab/nsp3 | 310 | I310M | I1128M | nonsyn | atT | atG | 94 | 94 | 1 | 3647-3649 |
ORF1ab/nsp3 | 310 | I310del1 | I1128del1 | del | aTt | a-t | 81 | 80 | 0.987654 | 3647-3649 |
ORF1ab/nsp3 | 310 | I310del1 | I1128del1 | del | Att | -tt | 81 | 1 | 0.0123457 | 3647-3649 |
ORF1ab/nsp3 | 310 | I310N | I1128N | nonsyn | aTt | aAt | 10 | 10 | 1 | 3647-3649 |
ORF1ab/nsp3 | 310 | I310del2 | I1128del2 | del | ATT | G-- | 2 | 1 | 0.5 | 3647-3649 |
ORF1ab/nsp3 | 310 | I310del2 | I1128del2 | del | aTT | a-- | 2 | 1 | 0.5 | 3647-3649 |
ORF1ab/nsp3 | 310 | I310Y | I1128Y | nonsyn | ATt | TAt | 1 | 1 | 1 | 3647-3649 |
ORF1ab/nsp3 | 310 | I310A | I1128A | nonsyn | ATt | GCt | 1 | 1 | 1 | 3647-3649 |
ORF1ab/nsp3 | 310 | I310K | I1128K | nonsyn | aTT | aAA | 1 | 1 | 1 | 3647-3649 |
ORF1ab/nsp3 | 310 | I310R | I1128R | nonsyn | aTT | aGA | 1 | 1 | 1 | 3647-3649 |
Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):
ORF | CodonNum | Mut | RefCodon | MutCodon | CodonCount | AACount | Lineage | LineageCodonProp |
ORF1ab/nsp3 | 310 | I310T | aTt | aCt | 961 | 962 | All | 0.000184 |
ORF1ab/nsp3 | 310 | I310T | aTT | aCC | 1 | 962 | All | 0 |
ORF1ab/nsp3 | 310 | I310V | Att | Gtt | 579 | 579 | All | 0.000111 |
ORF1ab/nsp3 | 310 | I310T | aTt | aCt | 321 | 321 | B.1.1.7 | 0.000287 |
ORF1ab/nsp3 | 310 | I310T | aTt | aCt | 270 | 270 | B.1.617.2 | 0.001017 |
ORF1ab/nsp3 | 310 | I310I | atT | atC | 211 | 225 | All | 0.00004 |
ORF1ab/nsp3 | 310 | I310I | atT | atA | 14 | 225 | All | 0.000003 |
ORF1ab/nsp3 | 310 | I310V | Att | Gtt | 176 | 176 | B.1.617.2 | 0.000663 |
ORF1ab/nsp3 | 310 | I310L | Att | Ctt | 173 | 173 | All | 0.000033 |
ORF1ab/nsp3 | 310 | I310T | aTt | aCt | 138 | 138 | AY.102 | 0.003659 |
ORF1ab/nsp3 | 310 | I310F | Att | Ttt | 129 | 130 | All | 0.000025 |
ORF1ab/nsp3 | 310 | I310F | AtT | TtC | 1 | 130 | All | 0 |
ORF1ab/nsp3 | 310 | I310del | ATT | --- | 110 | 110 | All | 0.000021 |
ORF1ab/nsp3 | 310 | I310S | aTt | aGt | 101 | 101 | All | 0.000019 |
ORF1ab/nsp3 | 310 | I310M | atT | atG | 94 | 94 | All | 0.000018 |
ORF1ab/nsp3 | 310 | I310L | Att | Ctt | 87 | 87 | AY.44 | 0.00053 |
ORF1ab/nsp3 | 310 | I310F | Att | Ttt | 82 | 82 | B.1.617.2 | 0.000309 |
ORF1ab/nsp3 | 310 | I310del1 | aTt | a-t | 80 | 81 | All | 0.000015 |
ORF1ab/nsp3 | 310 | I310del1 | Att | -tt | 1 | 81 | All | 0 |
ORF1ab/nsp3 | 310 | I310V | Att | Gtt | 76 | 76 | B.1.1.7 | 0.000068 |
ORF1ab/nsp3 | 310 | I310L | Att | Ctt | 67 | 67 | AY.4 | 0.000104 |
ORF1ab/nsp3 | 310 | I310del1 | aTt | a-t | 67 | 67 | B.1.1.7 | 0.00006 |
ORF1ab/nsp3 | 310 | I310M | atT | atG | 59 | 59 | AY.47 | 0.001835 |
ORF1ab/nsp3 | 310 | I310V | Att | Gtt | 52 | 52 | AY.4 | 0.000081 |
ORF1ab/nsp3 | 310 | I310V | Att | Gtt | 51 | 51 | AY.102 | 0.001352 |
ORF1ab/nsp3 | 310 | I310I | atT | atC | 48 | 48 | B.1.1.7 | 0.000043 |
ORF1ab/nsp3 | 310 | I310V | Att | Gtt | 40 | 40 | B.1.2 | 0.000352 |
ORF1ab/nsp3 | 310 | I310S | aTt | aGt | 32 | 32 | AY.43 | 0.000142 |
ORF1ab/nsp3 | 310 | I310I | atT | atC | 31 | 31 | B.1.258 | 0.002063 |
ORF1ab/nsp3 | 310 | I310T | aTt | aCt | 24 | 24 | AY.39 | 0.000593 |
ORF1ab/nsp3 | 310 | I310V | Att | Gtt | 24 | 24 | B.1.1.445 | 0.888889 |
ORF1ab/nsp3 | 310 | I310T | aTt | aCt | 24 | 24 | B.1.637 | 0.001754 |
ORF1ab/nsp3 | 310 | I310T | aTt | aCt | 20 | 21 | AY.44 | 0.000122 |
ORF1ab/nsp3 | 310 | I310T | aTT | aCC | 1 | 21 | AY.44 | 0.000006 |
ORF1ab/nsp3 | 310 | I310I | atT | atC | 21 | 21 | B.1.526 | 0.000494 |
ORF1ab/nsp3 | 310 | I310del | ATT | --- | 21 | 21 | P.1.15 | 0.004879 |
ORF1ab/nsp3 | 310 | I310T | aTt | aCt | 18 | 18 | AY.4 | 0.000028 |
ORF1ab/nsp3 | 310 | I310V | Att | Gtt | 18 | 18 | AY.44 | 0.00011 |
ORF1ab/nsp3 | 310 | I310I | atT | atC | 18 | 18 | B.1.177.7 | 0.002967 |
ORF1ab/nsp3 | 310 | I310del | ATT | --- | 17 | 17 | P.1 | 0.000268 |
ORF1ab/nsp3 | 310 | I310V | Att | Gtt | 16 | 16 | AY.9.2 | 0.000588 |
ORF1ab/nsp3 | 310 | I310T | aTt | aCt | 14 | 14 | AY.25 | 0.000084 |
ORF1ab/nsp3 | 310 | I310T | aTt | aCt | 14 | 14 | AY.4.2 | 0.000304 |
ORF1ab/nsp3 | 310 | I310S | aTt | aGt | 14 | 14 | AY.5 | 0.000289 |
ORF1ab/nsp3 | 310 | I310I | atT | atC | 8 | 12 | AY.4 | 0.000012 |
ORF1ab/nsp3 | 310 | I310I | atT | atA | 4 | 12 | AY.4 | 0.000006 |
ORF1ab/nsp3 | 310 | I310F | Att | Ttt | 11 | 11 | AY.102 | 0.000292 |
ORF1ab/nsp3 | 310 | I310I | atT | atC | 11 | 11 | AY.25 | 0.000066 |
ORF1ab/nsp3 | 310 | I310N | aTt | aAt | 10 | 10 | All | 0.000002 |
ORF1ab/nsp3 | 310 | I310del | ATT | --- | 10 | 10 | P.1.12 | 0.00484 |
ORF1ab/nsp3 | 310 | I310T | aTt | aCt | 9 | 9 | AY.42 | 0.000362 |
ORF1ab/nsp3 | 310 | I310del | ATT | --- | 9 | 9 | B.1.1.7 | 0.000008 |
ORF1ab/nsp3 | 310 | I310V | Att | Gtt | 9 | 9 | P.1 | 0.000142 |
ORF1ab/nsp3 | 310 | I310I | atT | atC | 8 | 8 | AY.34 | 0.000776 |
ORF1ab/nsp3 | 310 | I310T | aTt | aCt | 8 | 8 | AY.43 | 0.000035 |
ORF1ab/nsp3 | 310 | I310S | aTt | aGt | 8 | 8 | AY.99 | 0.008395 |
ORF1ab/nsp3 | 310 | I310del | ATT | --- | 8 | 8 | B.1 | 0.000073 |
ORF1ab/nsp3 | 310 | I310V | Att | Gtt | 8 | 8 | B.1.1 | 0.000145 |
ORF1ab/nsp3 | 310 | I310S | aTt | aGt | 8 | 8 | B.1.1.7 | 0.000007 |
ORF1ab/nsp3 | 310 | I310I | atT | atC | 5 | 8 | B.1.617.2 | 0.000019 |
ORF1ab/nsp3 | 310 | I310I | atT | atA | 3 | 8 | B.1.617.2 | 0.000011 |
ORF1ab/nsp3 | 310 | I310S | aTt | aGt | 7 | 7 | AY.26 | 0.000198 |
ORF1ab/nsp3 | 310 | I310S | aTt | aGt | 7 | 7 | B.1.1 | 0.000127 |
ORF1ab/nsp3 | 310 | I310I | atT | atC | 7 | 7 | B.1.1.519 | 0.000278 |
ORF1ab/nsp3 | 310 | I310T | aTt | aCt | 7 | 7 | B.1.177.21 | 0.000535 |
ORF1ab/nsp3 | 310 | I310V | Att | Gtt | 7 | 7 | B.1.429 | 0.000165 |
ORF1ab/nsp3 | 310 | I310T | aTt | aCt | 6 | 6 | AY.100 | 0.000276 |
ORF1ab/nsp3 | 310 | I310S | aTt | aGt | 6 | 6 | AY.4 | 0.000009 |
ORF1ab/nsp3 | 310 | I310T | aTt | aCt | 6 | 6 | AY.46 | 0.000624 |
ORF1ab/nsp3 | 310 | I310M | atT | atG | 5 | 5 | AY.4 | 0.000008 |
ORF1ab/nsp3 | 310 | I310T | aTt | aCt | 5 | 5 | AY.45 | 0.000608 |
ORF1ab/nsp3 | 310 | I310V | Att | Gtt | 5 | 5 | B.1 | 0.000046 |
ORF1ab/nsp3 | 310 | I310L | Att | Ctt | 5 | 5 | B.1.617.2 | 0.000019 |
ORF1ab/nsp3 | 310 | I310V | Att | Gtt | 4 | 4 | 0.222222 | |
ORF1ab/nsp3 | 310 | I310F | Att | Ttt | 4 | 4 | AY.103 | 0.000025 |
ORF1ab/nsp3 | 310 | I310V | Att | Gtt | 4 | 4 | AY.103 | 0.000025 |
ORF1ab/nsp3 | 310 | I310V | Att | Gtt | 4 | 4 | AY.25 | 0.000024 |
ORF1ab/nsp3 | 310 | I310S | aTt | aGt | 4 | 4 | AY.3 | 0.00004 |
ORF1ab/nsp3 | 310 | I310T | aTt | aCt | 4 | 4 | AY.37 | 0.001264 |
ORF1ab/nsp3 | 310 | I310F | Att | Ttt | 4 | 4 | AY.44 | 0.000024 |
ORF1ab/nsp3 | 310 | I310T | aTt | aCt | 4 | 4 | AY.47 | 0.000124 |
ORF1ab/nsp3 | 310 | I310V | Att | Gtt | 4 | 4 | AY.5 | 0.000083 |
ORF1ab/nsp3 | 310 | I310T | aTt | aCt | 4 | 4 | B.1.1 | 0.000073 |
ORF1ab/nsp3 | 310 | I310I | atT | atC | 3 | 4 | B.1.1 | 0.000054 |
ORF1ab/nsp3 | 310 | I310I | atT | atA | 1 | 4 | B.1.1 | 0.000018 |
ORF1ab/nsp3 | 310 | I310F | Att | Ttt | 4 | 4 | B.1.1.7 | 0.000004 |
ORF1ab/nsp3 | 310 | I310M | atT | atG | 4 | 4 | B.1.1.7 | 0.000004 |
ORF1ab/nsp3 | 310 | I310V | Att | Gtt | 4 | 4 | B.1.104 | 0.01476 |
ORF1ab/nsp3 | 310 | I310I | atT | atC | 4 | 4 | B.1.2 | 0.000035 |
ORF1ab/nsp3 | 310 | I310V | Att | Gtt | 4 | 4 | B.1.36.16 | 0.005698 |
ORF1ab/nsp3 | 310 | I310V | Att | Gtt | 4 | 4 | B.1.466.2 | 0.001565 |
ORF1ab/nsp3 | 310 | I310del | ATT | --- | 4 | 4 | B.1.621 | 0.000354 |
ORF1ab/nsp3 | 310 | I310V | Att | Gtt | 3 | 3 | AY.20 | 0.000117 |
ORF1ab/nsp3 | 310 | I310V | Att | Gtt | 3 | 3 | AY.29 | 0.000047 |
ORF1ab/nsp3 | 310 | I310T | aTt | aCt | 3 | 3 | AY.34.1 | 0.00153 |
ORF1ab/nsp3 | 310 | I310F | Att | Ttt | 3 | 3 | AY.38 | 0.001498 |
ORF1ab/nsp3 | 310 | I310F | Att | Ttt | 3 | 3 | AY.39 | 0.000074 |
ORF1ab/nsp3 | 310 | I310F | Att | Ttt | 3 | 3 | AY.4 | 0.000005 |
ORF1ab/nsp3 | 310 | I310V | Att | Gtt | 3 | 3 | AY.43 | 0.000013 |
ORF1ab/nsp3 | 310 | I310del | ATT | --- | 3 | 3 | AY.43 | 0.000013 |
ORF1ab/nsp3 | 310 | I310I | atT | atC | 3 | 3 | AY.44 | 0.000018 |
ORF1ab/nsp3 | 310 | I310S | aTt | aGt | 3 | 3 | AY.46.6 | 0.000217 |
ORF1ab/nsp3 | 310 | I310V | Att | Gtt | 3 | 3 | AY.54 | 0.000286 |
ORF1ab/nsp3 | 310 | I310T | aTt | aCt | 3 | 3 | AY.61 | 0.000314 |
ORF1ab/nsp3 | 310 | I310T | aTt | aCt | 3 | 3 | AY.98 | 0.000237 |
ORF1ab/nsp3 | 310 | I310T | aTt | aCt | 3 | 3 | AY.99.2 | 0.000276 |
ORF1ab/nsp3 | 310 | I310V | Att | Gtt | 3 | 3 | B.1.1.39 | 0.001529 |
ORF1ab/nsp3 | 310 | I310V | Att | Gtt | 3 | 3 | B.1.177.77 | 0.002179 |
ORF1ab/nsp3 | 310 | I310del1 | aTt | a-t | 3 | 3 | B.1.177.82 | 0.001432 |
ORF1ab/nsp3 | 310 | I310M | atT | atG | 3 | 3 | B.1.234 | 0.000396 |
ORF1ab/nsp3 | 310 | I310del1 | aTt | a-t | 3 | 3 | B.1.351 | 0.000089 |
ORF1ab/nsp3 | 310 | I310I | atT | atC | 3 | 3 | B.1.351 | 0.000089 |
ORF1ab/nsp3 | 310 | I310M | atT | atG | 3 | 3 | B.1.525 | 0.000339 |
ORF1ab/nsp3 | 310 | I310S | aTt | aGt | 3 | 3 | B.1.617.2 | 0.000011 |
ORF1ab/nsp3 | 310 | I310del | ATT | --- | 3 | 3 | C.37 | 0.000348 |
ORF1ab/nsp3 | 310 | I310I | atT | atC | 3 | 3 | C.37 | 0.000348 |
ORF1ab/nsp3 | 310 | I310I | atT | atC | 2 | 3 | P.1 | 0.000032 |
ORF1ab/nsp3 | 310 | I310I | atT | atA | 1 | 3 | P.1 | 0.000016 |
ORF1ab/nsp3 | 310 | I310del | ATT | --- | 3 | 3 | P.1.14 | 0.000143 |
ORF1ab/nsp3 | 310 | I310del | ATT | --- | 3 | 3 | P.1.7 | 0.000958 |
ORF1ab/nsp3 | 310 | I310del | ATT | --- | 2 | 2 | 0.111111 | |
ORF1ab/nsp3 | 310 | I310T | aTt | aCt | 2 | 2 | AH.2 | 0.024096 |
ORF1ab/nsp3 | 310 | I310del2 | ATT | G-- | 1 | 2 | All | 0 |
ORF1ab/nsp3 | 310 | I310del2 | aTT | a-- | 1 | 2 | All | 0 |
ORF1ab/nsp3 | 310 | I310S | aTt | aGt | 2 | 2 | AY.101 | 0.000981 |
ORF1ab/nsp3 | 310 | I310F | Att | Ttt | 2 | 2 | AY.110 | 0.000225 |
ORF1ab/nsp3 | 310 | I310V | Att | Gtt | 2 | 2 | AY.111 | 0.000366 |
ORF1ab/nsp3 | 310 | I310T | aTt | aCt | 2 | 2 | AY.117 | 0.000169 |
ORF1ab/nsp3 | 310 | I310T | aTt | aCt | 2 | 2 | AY.119 | 0.000071 |
ORF1ab/nsp3 | 310 | I310L | Att | Ctt | 2 | 2 | AY.119 | 0.000071 |
ORF1ab/nsp3 | 310 | I310M | atT | atG | 2 | 2 | AY.120 | 0.000074 |
ORF1ab/nsp3 | 310 | I310V | Att | Gtt | 2 | 2 | AY.23 | 0.000139 |
ORF1ab/nsp3 | 310 | I310M | atT | atG | 2 | 2 | AY.25 | 0.000012 |
ORF1ab/nsp3 | 310 | I310V | Att | Gtt | 2 | 2 | AY.26 | 0.000057 |
ORF1ab/nsp3 | 310 | I310V | Att | Gtt | 2 | 2 | AY.3 | 0.00002 |
ORF1ab/nsp3 | 310 | I310T | aTt | aCt | 2 | 2 | AY.33 | 0.000134 |
ORF1ab/nsp3 | 310 | I310V | Att | Gtt | 2 | 2 | AY.34.1 | 0.00102 |
ORF1ab/nsp3 | 310 | I310I | atT | atA | 2 | 2 | AY.4.2 | 0.000043 |
ORF1ab/nsp3 | 310 | I310I | atT | atA | 2 | 2 | AY.43 | 0.000009 |
ORF1ab/nsp3 | 310 | I310T | aTt | aCt | 2 | 2 | AY.46.1 | 0.002053 |
ORF1ab/nsp3 | 310 | I310V | Att | Gtt | 2 | 2 | AY.46.4 | 0.000329 |
ORF1ab/nsp3 | 310 | I310I | atT | atC | 2 | 2 | AY.47 | 0.000062 |
ORF1ab/nsp3 | 310 | I310T | aTt | aCt | 2 | 2 | AY.49 | 0.00639 |
ORF1ab/nsp3 | 310 | I310del1 | aTt | a-t | 2 | 2 | AY.52 | 0.001629 |
ORF1ab/nsp3 | 310 | I310T | aTt | aCt | 2 | 2 | AY.55 | 0.001835 |
ORF1ab/nsp3 | 310 | I310V | Att | Gtt | 2 | 2 | AY.59 | 0.001059 |
ORF1ab/nsp3 | 310 | I310V | Att | Gtt | 2 | 2 | AY.75 | 0.000112 |
ORF1ab/nsp3 | 310 | I310T | aTt | aCt | 2 | 2 | AY.86 | 0.00166 |
ORF1ab/nsp3 | 310 | I310L | Att | Ctt | 2 | 2 | B.1 | 0.000018 |
ORF1ab/nsp3 | 310 | I310S | aTt | aGt | 2 | 2 | B.1 | 0.000018 |
ORF1ab/nsp3 | 310 | I310M | atT | atG | 2 | 2 | B.1.1 | 0.000036 |
ORF1ab/nsp3 | 310 | I310I | atT | atC | 2 | 2 | B.1.1.153 | 0.002191 |
ORF1ab/nsp3 | 310 | I310M | atT | atG | 2 | 2 | B.1.1.37 | 0.000386 |
ORF1ab/nsp3 | 310 | I310T | aTt | aCt | 2 | 2 | B.1.1.519 | 0.000079 |
ORF1ab/nsp3 | 310 | I310N | aTt | aAt | 2 | 2 | B.1.1.7 | 0.000002 |
ORF1ab/nsp3 | 310 | I310L | Att | Ctt | 2 | 2 | B.1.1.7 | 0.000002 |
ORF1ab/nsp3 | 310 | I310del1 | aTt | a-t | 2 | 2 | B.1.160 | 0.000062 |
ORF1ab/nsp3 | 310 | I310I | atT | atC | 2 | 2 | B.1.160.25 | 0.022222 |
ORF1ab/nsp3 | 310 | I310V | Att | Gtt | 2 | 2 | B.1.177 | 0.000026 |
ORF1ab/nsp3 | 310 | I310N | aTt | aAt | 2 | 2 | B.1.177.59 | 0.032258 |
ORF1ab/nsp3 | 310 | I310I | atT | atC | 2 | 2 | B.1.177.82 | 0.000955 |
ORF1ab/nsp3 | 310 | I310M | atT | atG | 2 | 2 | B.1.351.3 | 0.001753 |
ORF1ab/nsp3 | 310 | I310I | atT | atC | 2 | 2 | B.1.36 | 0.000292 |
ORF1ab/nsp3 | 310 | I310M | atT | atG | 2 | 2 | B.1.429 | 0.000047 |
ORF1ab/nsp3 | 310 | I310V | Att | Gtt | 2 | 2 | B.1.526 | 0.000047 |
ORF1ab/nsp3 | 310 | I310M | atT | atG | 2 | 2 | B.1.617.2 | 0.000008 |
ORF1ab/nsp3 | 310 | I310del | ATT | --- | 2 | 2 | N.6 | 0.014184 |
ORF1ab/nsp3 | 310 | I310V | Att | Gtt | 2 | 2 | P.2 | 0.000373 |
ORF1ab/nsp3 | 310 | I310T | aTt | aCt | 2 | 2 | Q.8 | 0.00033 |
ORF1ab/nsp3 | 310 | I310T | aTt | aCt | 1 | 1 | 0.055556 | |
ORF1ab/nsp3 | 310 | I310N | aTt | aAt | 1 | 1 | 0.055556 | |
ORF1ab/nsp3 | 310 | I310T | aTt | aCt | 1 | 1 | A.1 | 0.000282 |
ORF1ab/nsp3 | 310 | I310N | aTt | aAt | 1 | 1 | A.1 | 0.000282 |
ORF1ab/nsp3 | 310 | I310I | atT | atC | 1 | 1 | AD.2 | 0.000219 |
ORF1ab/nsp3 | 310 | I310A | ATt | GCt | 1 | 1 | All | 0 |
ORF1ab/nsp3 | 310 | I310Y | ATt | TAt | 1 | 1 | All | 0 |
ORF1ab/nsp3 | 310 | I310K | aTT | aAA | 1 | 1 | All | 0 |
ORF1ab/nsp3 | 310 | I310R | aTT | aGA | 1 | 1 | All | 0 |
ORF1ab/nsp3 | 310 | I310del | ATT | --- | 1 | 1 | AY.100 | 0.000046 |
ORF1ab/nsp3 | 310 | I310I | atT | atC | 1 | 1 | AY.103 | 0.000006 |
ORF1ab/nsp3 | 310 | I310T | aTt | aCt | 1 | 1 | AY.106 | 0.000335 |
ORF1ab/nsp3 | 310 | I310I | atT | atC | 1 | 1 | AY.109 | 0.00074 |
ORF1ab/nsp3 | 310 | I310V | Att | Gtt | 1 | 1 | AY.113 | 0.000142 |
ORF1ab/nsp3 | 310 | I310T | aTt | aCt | 1 | 1 | AY.116 | 0.000287 |
ORF1ab/nsp3 | 310 | I310V | Att | Gtt | 1 | 1 | AY.117 | 0.000085 |
ORF1ab/nsp3 | 310 | I310I | atT | atC | 1 | 1 | AY.118 | 0.000063 |
ORF1ab/nsp3 | 310 | I310V | Att | Gtt | 1 | 1 | AY.119 | 0.000035 |
ORF1ab/nsp3 | 310 | I310del | ATT | --- | 1 | 1 | AY.119 | 0.000035 |
ORF1ab/nsp3 | 310 | I310I | atT | atC | 1 | 1 | AY.120 | 0.000037 |
ORF1ab/nsp3 | 310 | I310T | aTt | aCt | 1 | 1 | AY.120 | 0.000037 |
ORF1ab/nsp3 | 310 | I310F | Att | Ttt | 1 | 1 | AY.120 | 0.000037 |
ORF1ab/nsp3 | 310 | I310V | Att | Gtt | 1 | 1 | AY.120.1 | 0.000321 |
ORF1ab/nsp3 | 310 | I310I | atT | atC | 1 | 1 | AY.121 | 0.000135 |
ORF1ab/nsp3 | 310 | I310T | aTt | aCt | 1 | 1 | AY.121 | 0.000135 |
ORF1ab/nsp3 | 310 | I310I | atT | atC | 1 | 1 | AY.16 | 0.00038 |
ORF1ab/nsp3 | 310 | I310T | aTt | aCt | 1 | 1 | AY.20 | 0.000039 |
ORF1ab/nsp3 | 310 | I310I | atT | atC | 1 | 1 | AY.23 | 0.00007 |
ORF1ab/nsp3 | 310 | I310T | aTt | aCt | 1 | 1 | AY.23 | 0.00007 |
ORF1ab/nsp3 | 310 | I310del | ATT | --- | 1 | 1 | AY.23 | 0.00007 |
ORF1ab/nsp3 | 310 | I310del | ATT | --- | 1 | 1 | AY.24 | 0.000431 |
ORF1ab/nsp3 | 310 | I310S | aTt | aGt | 1 | 1 | AY.25 | 0.000006 |
ORF1ab/nsp3 | 310 | I310del | ATT | --- | 1 | 1 | AY.26 | 0.000028 |
ORF1ab/nsp3 | 310 | I310F | Att | Ttt | 1 | 1 | AY.29 | 0.000016 |
ORF1ab/nsp3 | 310 | I310T | aTt | aCt | 1 | 1 | AY.29 | 0.000016 |
ORF1ab/nsp3 | 310 | I310M | atT | atG | 1 | 1 | AY.3 | 0.00001 |
ORF1ab/nsp3 | 310 | I310T | aTt | aCt | 1 | 1 | AY.3 | 0.00001 |
ORF1ab/nsp3 | 310 | I310I | atT | atC | 1 | 1 | AY.3.1 | 0.000085 |
ORF1ab/nsp3 | 310 | I310T | aTt | aCt | 1 | 1 | AY.3.1 | 0.000085 |
ORF1ab/nsp3 | 310 | I310F | AtT | TtC | 1 | 1 | AY.30 | 0.000396 |
ORF1ab/nsp3 | 310 | I310F | Att | Ttt | 1 | 1 | AY.32 | 0.000532 |
ORF1ab/nsp3 | 310 | I310V | Att | Gtt | 1 | 1 | AY.36 | 0.000148 |
ORF1ab/nsp3 | 310 | I310V | Att | Gtt | 1 | 1 | AY.39 | 0.000025 |
ORF1ab/nsp3 | 310 | I310del | ATT | --- | 1 | 1 | AY.4 | 0.000002 |
ORF1ab/nsp3 | 310 | I310N | aTt | aAt | 1 | 1 | AY.4 | 0.000002 |
ORF1ab/nsp3 | 310 | I310V | Att | Gtt | 1 | 1 | AY.4.2 | 0.000022 |
ORF1ab/nsp3 | 310 | I310del | ATT | --- | 1 | 1 | AY.4.5 | 0.000107 |
ORF1ab/nsp3 | 310 | I310I | atT | atC | 1 | 1 | AY.41 | 0.000294 |
ORF1ab/nsp3 | 310 | I310V | Att | Gtt | 1 | 1 | AY.42 | 0.00004 |
ORF1ab/nsp3 | 310 | I310M | atT | atG | 1 | 1 | AY.43 | 0.000004 |
ORF1ab/nsp3 | 310 | I310S | aTt | aGt | 1 | 1 | AY.44 | 0.000006 |
ORF1ab/nsp3 | 310 | I310M | atT | atG | 1 | 1 | AY.44 | 0.000006 |
ORF1ab/nsp3 | 310 | I310del | ATT | --- | 1 | 1 | AY.44 | 0.000006 |
ORF1ab/nsp3 | 310 | I310N | aTt | aAt | 1 | 1 | AY.44 | 0.000006 |
ORF1ab/nsp3 | 310 | I310F | Att | Ttt | 1 | 1 | AY.45 | 0.000122 |
ORF1ab/nsp3 | 310 | I310F | Att | Ttt | 1 | 1 | AY.46 | 0.000104 |
ORF1ab/nsp3 | 310 | I310F | Att | Ttt | 1 | 1 | AY.46.4 | 0.000165 |
ORF1ab/nsp3 | 310 | I310V | Att | Gtt | 1 | 1 | AY.46.5 | 0.000198 |
ORF1ab/nsp3 | 310 | I310L | Att | Ctt | 1 | 1 | AY.46.5 | 0.000198 |
ORF1ab/nsp3 | 310 | I310T | aTt | aCt | 1 | 1 | AY.5 | 0.000021 |
ORF1ab/nsp3 | 310 | I310I | atT | atC | 1 | 1 | AY.5 | 0.000021 |
ORF1ab/nsp3 | 310 | I310V | Att | Gtt | 1 | 1 | AY.5.4 | 0.000277 |
ORF1ab/nsp3 | 310 | I310T | aTt | aCt | 1 | 1 | AY.52 | 0.000814 |
ORF1ab/nsp3 | 310 | I310V | Att | Gtt | 1 | 1 | AY.58 | 0.000907 |
ORF1ab/nsp3 | 310 | I310I | atT | atA | 1 | 1 | AY.59 | 0.00053 |
ORF1ab/nsp3 | 310 | I310V | Att | Gtt | 1 | 1 | AY.61 | 0.000105 |
ORF1ab/nsp3 | 310 | I310M | atT | atG | 1 | 1 | AY.65 | 0.000533 |
ORF1ab/nsp3 | 310 | I310del2 | aTT | a-- | 1 | 1 | AY.67 | 0.000464 |
ORF1ab/nsp3 | 310 | I310T | aTt | aCt | 1 | 1 | AY.68 | 0.000274 |
ORF1ab/nsp3 | 310 | I310T | aTt | aCt | 1 | 1 | AY.69 | 0.000187 |
ORF1ab/nsp3 | 310 | I310I | atT | atC | 1 | 1 | AY.79 | 0.001211 |
ORF1ab/nsp3 | 310 | I310I | atT | atC | 1 | 1 | AY.82 | 0.001357 |
ORF1ab/nsp3 | 310 | I310V | Att | Gtt | 1 | 1 | AY.84 | 0.000437 |
ORF1ab/nsp3 | 310 | I310T | aTt | aCt | 1 | 1 | AY.9.2 | 0.000037 |
ORF1ab/nsp3 | 310 | I310V | Att | Gtt | 1 | 1 | AY.90 | 0.000684 |
ORF1ab/nsp3 | 310 | I310T | aTt | aCt | 1 | 1 | AY.92 | 0.000287 |
ORF1ab/nsp3 | 310 | I310T | aTt | aCt | 1 | 1 | AY.93 | 0.000273 |
ORF1ab/nsp3 | 310 | I310N | aTt | aAt | 1 | 1 | AY.94 | 0.000443 |
ORF1ab/nsp3 | 310 | I310V | Att | Gtt | 1 | 1 | AY.98.1 | 0.000048 |
ORF1ab/nsp3 | 310 | I310S | aTt | aGt | 1 | 1 | AY.98.1 | 0.000048 |
ORF1ab/nsp3 | 310 | I310del | ATT | --- | 1 | 1 | AY.99 | 0.001049 |
ORF1ab/nsp3 | 310 | I310I | atT | atC | 1 | 1 | B.1 | 0.000009 |
ORF1ab/nsp3 | 310 | I310F | Att | Ttt | 1 | 1 | B.1 | 0.000009 |
ORF1ab/nsp3 | 310 | I310T | aTt | aCt | 1 | 1 | B.1 | 0.000009 |
ORF1ab/nsp3 | 310 | I310L | Att | Ctt | 1 | 1 | B.1.1 | 0.000018 |
ORF1ab/nsp3 | 310 | I310R | aTT | aGA | 1 | 1 | B.1.1 | 0.000018 |
ORF1ab/nsp3 | 310 | I310K | aTT | aAA | 1 | 1 | B.1.1 | 0.000018 |
ORF1ab/nsp3 | 310 | I310del | ATT | --- | 1 | 1 | B.1.1 | 0.000018 |
ORF1ab/nsp3 | 310 | I310M | atT | atG | 1 | 1 | B.1.1.171 | 0.003676 |
ORF1ab/nsp3 | 310 | I310I | atT | atC | 1 | 1 | B.1.1.171 | 0.003676 |
ORF1ab/nsp3 | 310 | I310T | aTt | aCt | 1 | 1 | B.1.1.241 | 0.00207 |
ORF1ab/nsp3 | 310 | I310I | atT | atC | 1 | 1 | B.1.1.273 | 0.006757 |
ORF1ab/nsp3 | 310 | I310V | Att | Gtt | 1 | 1 | B.1.1.311 | 0.000358 |
ORF1ab/nsp3 | 310 | I310V | Att | Gtt | 1 | 1 | B.1.1.316 | 0.000925 |
ORF1ab/nsp3 | 310 | I310del | ATT | --- | 1 | 1 | B.1.1.33 | 0.000421 |
ORF1ab/nsp3 | 310 | I310L | Att | Ctt | 1 | 1 | B.1.1.334 | 0.016393 |
ORF1ab/nsp3 | 310 | I310T | aTt | aCt | 1 | 1 | B.1.1.337 | 0.003597 |
ORF1ab/nsp3 | 310 | I310del | ATT | --- | 1 | 1 | B.1.1.348 | 0.000796 |
ORF1ab/nsp3 | 310 | I310L | Att | Ctt | 1 | 1 | B.1.1.438 | 0.05 |
ORF1ab/nsp3 | 310 | I310del1 | Att | -tt | 1 | 1 | B.1.1.46 | 0.004367 |
ORF1ab/nsp3 | 310 | I310V | Att | Gtt | 1 | 1 | B.1.1.519 | 0.00004 |
ORF1ab/nsp3 | 310 | I310T | aTt | aCt | 1 | 1 | B.1.1.63 | 0.000386 |
ORF1ab/nsp3 | 310 | I310V | Att | Gtt | 1 | 1 | B.1.1.63 | 0.000386 |
ORF1ab/nsp3 | 310 | I310A | ATt | GCt | 1 | 1 | B.1.1.7 | 0.000001 |
ORF1ab/nsp3 | 310 | I310T | aTt | aCt | 1 | 1 | B.1.128 | 0.000635 |
ORF1ab/nsp3 | 310 | I310I | atT | atC | 1 | 1 | B.1.177 | 0.000013 |
ORF1ab/nsp3 | 310 | I310del | ATT | --- | 1 | 1 | B.1.177 | 0.000013 |
ORF1ab/nsp3 | 310 | I310T | aTt | aCt | 1 | 1 | B.1.177 | 0.000013 |
ORF1ab/nsp3 | 310 | I310F | Att | Ttt | 1 | 1 | B.1.177.16 | 0.000664 |
ORF1ab/nsp3 | 310 | I310I | atT | atC | 1 | 1 | B.1.177.46 | 0.000918 |
ORF1ab/nsp3 | 310 | I310I | atT | atC | 1 | 1 | B.1.177.50 | 0.004695 |
ORF1ab/nsp3 | 310 | I310del1 | aTt | a-t | 1 | 1 | B.1.177.6 | 0.000977 |
ORF1ab/nsp3 | 310 | I310I | atT | atC | 1 | 1 | B.1.177.77 | 0.000726 |
ORF1ab/nsp3 | 310 | I310Y | ATt | TAt | 1 | 1 | B.1.2 | 0.000009 |
ORF1ab/nsp3 | 310 | I310T | aTt | aCt | 1 | 1 | B.1.2 | 0.000009 |
ORF1ab/nsp3 | 310 | I310del | ATT | --- | 1 | 1 | B.1.2 | 0.000009 |
ORF1ab/nsp3 | 310 | I310L | Att | Ctt | 1 | 1 | B.1.2 | 0.000009 |
ORF1ab/nsp3 | 310 | I310del | ATT | --- | 1 | 1 | B.1.218 | 0.005155 |
ORF1ab/nsp3 | 310 | I310F | Att | Ttt | 1 | 1 | B.1.221 | 0.000071 |
ORF1ab/nsp3 | 310 | I310F | Att | Ttt | 1 | 1 | B.1.240 | 0.000216 |
ORF1ab/nsp3 | 310 | I310del | ATT | --- | 1 | 1 | B.1.243 | 0.00007 |
ORF1ab/nsp3 | 310 | I310V | Att | Gtt | 1 | 1 | B.1.258 | 0.000067 |
ORF1ab/nsp3 | 310 | I310T | aTt | aCt | 1 | 1 | B.1.293 | 0.0125 |
ORF1ab/nsp3 | 310 | I310V | Att | Gtt | 1 | 1 | B.1.351 | 0.00003 |
ORF1ab/nsp3 | 310 | I310del | ATT | --- | 1 | 1 | B.1.36 | 0.000146 |
ORF1ab/nsp3 | 310 | I310L | Att | Ctt | 1 | 1 | B.1.36 | 0.000146 |
ORF1ab/nsp3 | 310 | I310del1 | aTt | a-t | 1 | 1 | B.1.36.1 | 0.00114 |
ORF1ab/nsp3 | 310 | I310T | aTt | aCt | 1 | 1 | B.1.36.37 | 0.002778 |
ORF1ab/nsp3 | 310 | I310T | aTt | aCt | 1 | 1 | B.1.367 | 0.000792 |
ORF1ab/nsp3 | 310 | I310F | Att | Ttt | 1 | 1 | B.1.378 | 0.006849 |
ORF1ab/nsp3 | 310 | I310L | Att | Ctt | 1 | 1 | B.1.396 | 0.000706 |
ORF1ab/nsp3 | 310 | I310F | Att | Ttt | 1 | 1 | B.1.426 | 0.001009 |
ORF1ab/nsp3 | 310 | I310V | Att | Gtt | 1 | 1 | B.1.427 | 0.00005 |
ORF1ab/nsp3 | 310 | I310S | aTt | aGt | 1 | 1 | B.1.429 | 0.000024 |
ORF1ab/nsp3 | 310 | I310del | ATT | --- | 1 | 1 | B.1.429 | 0.000024 |
ORF1ab/nsp3 | 310 | I310I | atT | atC | 1 | 1 | B.1.438.1 | 0.000107 |
ORF1ab/nsp3 | 310 | I310L | Att | Ctt | 1 | 1 | B.1.462 | 0.007246 |
ORF1ab/nsp3 | 310 | I310del | ATT | --- | 1 | 1 | B.1.596 | 0.000087 |
ORF1ab/nsp3 | 310 | I310V | Att | Gtt | 1 | 1 | B.1.596 | 0.000087 |
ORF1ab/nsp3 | 310 | I310V | Att | Gtt | 1 | 1 | B.1.609 | 0.000479 |
ORF1ab/nsp3 | 310 | I310F | Att | Ttt | 1 | 1 | B.1.617.1 | 0.000129 |
ORF1ab/nsp3 | 310 | I310del | ATT | --- | 1 | 1 | B.1.617.2 | 0.000004 |
ORF1ab/nsp3 | 310 | I310del2 | ATT | G-- | 1 | 1 | B.1.617.2 | 0.000004 |
ORF1ab/nsp3 | 310 | I310T | aTt | aCt | 1 | 1 | B.1.621.1 | 0.000506 |
ORF1ab/nsp3 | 310 | I310N | aTt | aAt | 1 | 1 | B.1.621.1 | 0.000506 |
ORF1ab/nsp3 | 310 | I310del | ATT | --- | 1 | 1 | B.1.627 | 0.00202 |
ORF1ab/nsp3 | 310 | I310I | atT | atC | 1 | 1 | B.1.637 | 0.000073 |
ORF1ab/nsp3 | 310 | I310V | Att | Gtt | 1 | 1 | B.1.637 | 0.000073 |
ORF1ab/nsp3 | 310 | I310V | Att | Gtt | 1 | 1 | C.37 | 0.000116 |
ORF1ab/nsp3 | 310 | I310T | aTt | aCt | 1 | 1 | C.37 | 0.000116 |
ORF1ab/nsp3 | 310 | I310I | atT | atC | 1 | 1 | D.2 | 0.000075 |
ORF1ab/nsp3 | 310 | I310M | atT | atG | 1 | 1 | P.1 | 0.000016 |
ORF1ab/nsp3 | 310 | I310del | ATT | --- | 1 | 1 | P.1.1 | 0.000318 |
ORF1ab/nsp3 | 310 | I310del | ATT | --- | 1 | 1 | P.1.10 | 0.000269 |
ORF1ab/nsp3 | 310 | I310I | atT | atC | 1 | 1 | P.1.13 | 0.000898 |
ORF1ab/nsp3 | 310 | I310del | ATT | --- | 1 | 1 | P.1.13 | 0.000898 |
ORF1ab/nsp3 | 310 | I310T | aTt | aCt | 1 | 1 | P.1.14 | 0.000048 |
ORF1ab/nsp3 | 310 | I310V | Att | Gtt | 1 | 1 | P.1.14 | 0.000048 |
ORF1ab/nsp3 | 310 | I310I | atT | atC | 1 | 1 | P.1.15 | 0.000232 |
ORF1ab/nsp3 | 310 | I310V | Att | Gtt | 1 | 1 | P.1.15 | 0.000232 |
ORF1ab/nsp3 | 310 | I310T | aTt | aCt | 1 | 1 | P.1.15 | 0.000232 |
ORF1ab/nsp3 | 310 | I310del | ATT | --- | 1 | 1 | P.1.2 | 0.001156 |
ORF1ab/nsp3 | 310 | I310I | atT | atC | 1 | 1 | P.1.7 | 0.000319 |
ORF1ab/nsp3 | 310 | I310T | aTt | aCt | 1 | 1 | Q.1 | 0.000126 |
ORF1ab/nsp3 | 310 | I310del1 | aTt | a-t | 1 | 1 | R.1 | 0.00009 |
ORF1ab/nsp3 | 310 | I310S | aTt | aGt | 1 | 1 | R.1 | 0.00009 |
ORF1ab/nsp3 | 310 | I310V | Att | Gtt | 1 | 1 | R.1 | 0.00009 |
CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk
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