CoV-GLUE | Mutations | Mutation
Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):
ORF | CodonNum | Mut | ORF1abMut | MutType | RefCodon | MutCodon | AACount | CodonCount | CodonProp | Genome Position |
ORF1ab/nsp3 | 309 | D309Y | D1127Y | nonsyn | Gac | Tac | 12594 | 12582 | 0.999047 | 3644-3646 |
ORF1ab/nsp3 | 309 | D309Y | D1127Y | nonsyn | GaC | TaT | 12594 | 12 | 0.000952835 | 3644-3646 |
ORF1ab/nsp3 | 309 | D309D | D1127D | syn | gaC | gaT | 2265 | 2265 | 1 | 3644-3646 |
ORF1ab/nsp3 | 309 | D309N | D1127N | nonsyn | Gac | Aac | 355 | 355 | 1 | 3644-3646 |
ORF1ab/nsp3 | 309 | D309G | D1127G | nonsyn | gAc | gGc | 142 | 140 | 0.985915 | 3644-3646 |
ORF1ab/nsp3 | 309 | D309G | D1127G | nonsyn | gAC | gGG | 142 | 2 | 0.0140845 | 3644-3646 |
ORF1ab/nsp3 | 309 | D309del | D1127del | del | GAC | --- | 110 | 110 | 1 | 3644-3646 |
ORF1ab/nsp3 | 309 | D309E | D1127E | nonsyn | gaC | gaA | 33 | 27 | 0.818182 | 3644-3646 |
ORF1ab/nsp3 | 309 | D309E | D1127E | nonsyn | gaC | gaG | 33 | 6 | 0.181818 | 3644-3646 |
ORF1ab/nsp3 | 309 | D309A | D1127A | nonsyn | gAc | gCc | 30 | 30 | 1 | 3644-3646 |
ORF1ab/nsp3 | 309 | D309V | D1127V | nonsyn | gAc | gTc | 11 | 10 | 0.909091 | 3644-3646 |
ORF1ab/nsp3 | 309 | D309V | D1127V | nonsyn | gAC | gTA | 11 | 1 | 0.0909091 | 3644-3646 |
ORF1ab/nsp3 | 309 | D309H | D1127H | nonsyn | Gac | Cac | 3 | 3 | 1 | 3644-3646 |
ORF1ab/nsp3 | 309 | D309del1 | D1127del1 | del | gAc | g-c | 3 | 2 | 0.666667 | 3644-3646 |
ORF1ab/nsp3 | 309 | D309del1 | D1127del1 | del | GaC | -aT | 3 | 1 | 0.333333 | 3644-3646 |
ORF1ab/nsp3 | 309 | D309P | D1127P | nonsyn | GAC | CCA | 2 | 2 | 1 | 3644-3646 |
ORF1ab/nsp3 | 309 | D309L | D1127L | nonsyn | GAC | TTA | 2 | 1 | 0.5 | 3644-3646 |
ORF1ab/nsp3 | 309 | D309L | D1127L | nonsyn | GAc | CTc | 2 | 1 | 0.5 | 3644-3646 |
ORF1ab/nsp3 | 309 | D309I | D1127I | nonsyn | GAC | ATT | 2 | 1 | 0.5 | 3644-3646 |
ORF1ab/nsp3 | 309 | D309I | D1127I | nonsyn | GAc | ATc | 2 | 1 | 0.5 | 3644-3646 |
ORF1ab/nsp3 | 309 | D309T | D1127T | nonsyn | GAC | ACA | 1 | 1 | 1 | 3644-3646 |
ORF1ab/nsp3 | 309 | D309X | D1127X | nonsyn | GaC | TaA | 1 | 1 | 1 | 3644-3646 |
ORF1ab/nsp3 | 309 | D309F | D1127F | nonsyn | GAc | TTc | 1 | 1 | 1 | 3644-3646 |
Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):
ORF | CodonNum | Mut | RefCodon | MutCodon | CodonCount | AACount | Lineage | LineageCodonProp |
ORF1ab/nsp3 | 309 | D309Y | Gac | Tac | 12582 | 12594 | All | 0.002406 |
ORF1ab/nsp3 | 309 | D309Y | GaC | TaT | 12 | 12594 | All | 0.000002 |
ORF1ab/nsp3 | 309 | D309Y | Gac | Tac | 11715 | 11727 | AY.3.1 | 0.998806 |
ORF1ab/nsp3 | 309 | D309Y | GaC | TaT | 12 | 11727 | AY.3.1 | 0.001023 |
ORF1ab/nsp3 | 309 | D309D | gaC | gaT | 2265 | 2265 | All | 0.000433 |
ORF1ab/nsp3 | 309 | D309D | gaC | gaT | 525 | 525 | B.1.177 | 0.006913 |
ORF1ab/nsp3 | 309 | D309N | Gac | Aac | 355 | 355 | All | 0.000068 |
ORF1ab/nsp3 | 309 | D309D | gaC | gaT | 344 | 344 | B.1.1.7 | 0.000308 |
ORF1ab/nsp3 | 309 | D309D | gaC | gaT | 287 | 287 | AY.4 | 0.000447 |
ORF1ab/nsp3 | 309 | D309N | Gac | Aac | 211 | 211 | B.1.1.7 | 0.000189 |
ORF1ab/nsp3 | 309 | D309D | gaC | gaT | 162 | 162 | B.1.2 | 0.001426 |
ORF1ab/nsp3 | 309 | D309G | gAc | gGc | 140 | 142 | All | 0.000027 |
ORF1ab/nsp3 | 309 | D309G | gAC | gGG | 2 | 142 | All | 0 |
ORF1ab/nsp3 | 309 | D309D | gaC | gaT | 134 | 134 | B.1.177.28 | 0.992593 |
ORF1ab/nsp3 | 309 | D309Y | Gac | Tac | 116 | 116 | AY.25 | 0.000698 |
ORF1ab/nsp3 | 309 | D309Y | Gac | Tac | 115 | 115 | AY.92 | 0.033036 |
ORF1ab/nsp3 | 309 | D309del | GAC | --- | 110 | 110 | All | 0.000021 |
ORF1ab/nsp3 | 309 | D309D | gaC | gaT | 103 | 103 | AY.12 | 0.032554 |
ORF1ab/nsp3 | 309 | D309Y | Gac | Tac | 98 | 98 | B.1.617.2 | 0.000369 |
ORF1ab/nsp3 | 309 | D309D | gaC | gaT | 76 | 76 | AY.103 | 0.000472 |
ORF1ab/nsp3 | 309 | D309Y | Gac | Tac | 61 | 61 | AY.84 | 0.026684 |
ORF1ab/nsp3 | 309 | D309D | gaC | gaT | 58 | 58 | AY.74 | 0.006708 |
ORF1ab/nsp3 | 309 | D309Y | Gac | Tac | 52 | 52 | AY.117 | 0.004395 |
ORF1ab/nsp3 | 309 | D309Y | Gac | Tac | 51 | 51 | AY.4 | 0.000079 |
ORF1ab/nsp3 | 309 | D309D | gaC | gaT | 50 | 50 | B.1.617.2 | 0.000188 |
ORF1ab/nsp3 | 309 | D309G | gAc | gGc | 45 | 46 | B.1.1.7 | 0.00004 |
ORF1ab/nsp3 | 309 | D309G | gAC | gGG | 1 | 46 | B.1.1.7 | 0.000001 |
ORF1ab/nsp3 | 309 | D309Y | Gac | Tac | 44 | 44 | AY.3 | 0.000438 |
ORF1ab/nsp3 | 309 | D309E | gaC | gaA | 27 | 33 | All | 0.000005 |
ORF1ab/nsp3 | 309 | D309E | gaC | gaG | 6 | 33 | All | 0.000001 |
ORF1ab/nsp3 | 309 | D309A | gAc | gCc | 30 | 30 | All | 0.000006 |
ORF1ab/nsp3 | 309 | D309D | gaC | gaT | 30 | 30 | AY.44 | 0.000183 |
ORF1ab/nsp3 | 309 | D309D | gaC | gaT | 27 | 27 | AY.43 | 0.00012 |
ORF1ab/nsp3 | 309 | D309D | gaC | gaT | 26 | 26 | B.1 | 0.000238 |
ORF1ab/nsp3 | 309 | D309D | gaC | gaT | 25 | 25 | AY.25 | 0.00015 |
ORF1ab/nsp3 | 309 | D309Y | Gac | Tac | 25 | 25 | AY.4.5 | 0.002687 |
ORF1ab/nsp3 | 309 | D309D | gaC | gaT | 25 | 25 | AY.6 | 0.001028 |
ORF1ab/nsp3 | 309 | D309G | gAc | gGc | 22 | 22 | B.1.617.2 | 0.000083 |
ORF1ab/nsp3 | 309 | D309D | gaC | gaT | 21 | 21 | A.2.5 | 0.010479 |
ORF1ab/nsp3 | 309 | D309del | GAC | --- | 21 | 21 | P.1.15 | 0.004879 |
ORF1ab/nsp3 | 309 | D309D | gaC | gaT | 19 | 19 | AY.100 | 0.000874 |
ORF1ab/nsp3 | 309 | D309G | gAc | gGc | 19 | 19 | AY.4 | 0.00003 |
ORF1ab/nsp3 | 309 | D309Y | Gac | Tac | 19 | 19 | AY.5 | 0.000392 |
ORF1ab/nsp3 | 309 | D309D | gaC | gaT | 19 | 19 | B.1.429 | 0.000447 |
ORF1ab/nsp3 | 309 | D309Y | Gac | Tac | 18 | 18 | AY.105 | 0.011576 |
ORF1ab/nsp3 | 309 | D309Y | Gac | Tac | 16 | 16 | AY.103 | 0.000099 |
ORF1ab/nsp3 | 309 | D309N | Gac | Aac | 16 | 16 | AY.4 | 0.000025 |
ORF1ab/nsp3 | 309 | D309del | GAC | --- | 16 | 16 | P.1 | 0.000252 |
ORF1ab/nsp3 | 309 | D309D | gaC | gaT | 15 | 15 | AY.3 | 0.000149 |
ORF1ab/nsp3 | 309 | D309D | gaC | gaT | 15 | 15 | AY.42 | 0.000603 |
ORF1ab/nsp3 | 309 | D309N | Gac | Aac | 15 | 15 | AY.44 | 0.000091 |
ORF1ab/nsp3 | 309 | D309D | gaC | gaT | 15 | 15 | B.1.1.519 | 0.000596 |
ORF1ab/nsp3 | 309 | D309Y | Gac | Tac | 14 | 14 | AY.119 | 0.000494 |
ORF1ab/nsp3 | 309 | D309D | gaC | gaT | 14 | 14 | B.1.177.60 | 0.003058 |
ORF1ab/nsp3 | 309 | D309N | Gac | Aac | 14 | 14 | B.1.258 | 0.000932 |
ORF1ab/nsp3 | 309 | D309D | gaC | gaT | 13 | 13 | AY.29 | 0.000205 |
ORF1ab/nsp3 | 309 | D309D | gaC | gaT | 13 | 13 | B.1.599 | 0.047445 |
ORF1ab/nsp3 | 309 | D309G | gAc | gGc | 12 | 12 | AY.43 | 0.000053 |
ORF1ab/nsp3 | 309 | D309Y | Gac | Tac | 12 | 12 | AY.44 | 0.000073 |
ORF1ab/nsp3 | 309 | D309V | gAc | gTc | 10 | 11 | All | 0.000002 |
ORF1ab/nsp3 | 309 | D309V | gAC | gTA | 1 | 11 | All | 0 |
ORF1ab/nsp3 | 309 | D309Y | Gac | Tac | 11 | 11 | AY.39 | 0.000272 |
ORF1ab/nsp3 | 309 | D309D | gaC | gaT | 11 | 11 | AY.46 | 0.001145 |
ORF1ab/nsp3 | 309 | D309D | gaC | gaT | 11 | 11 | B.1.1 | 0.0002 |
ORF1ab/nsp3 | 309 | D309E | gaC | gaA | 9 | 11 | B.1.1.7 | 0.000008 |
ORF1ab/nsp3 | 309 | D309E | gaC | gaG | 2 | 11 | B.1.1.7 | 0.000002 |
ORF1ab/nsp3 | 309 | D309Y | Gac | Tac | 10 | 10 | AY.43 | 0.000044 |
ORF1ab/nsp3 | 309 | D309Y | Gac | Tac | 10 | 10 | AY.55 | 0.009174 |
ORF1ab/nsp3 | 309 | D309Y | Gac | Tac | 10 | 10 | B.1.1.7 | 0.000009 |
ORF1ab/nsp3 | 309 | D309A | gAc | gCc | 10 | 10 | B.1.177.81 | 0.001893 |
ORF1ab/nsp3 | 309 | D309del | GAC | --- | 10 | 10 | P.1.12 | 0.00484 |
ORF1ab/nsp3 | 309 | D309D | gaC | gaT | 10 | 10 | Q.8 | 0.001649 |
ORF1ab/nsp3 | 309 | D309D | gaC | gaT | 9 | 9 | AY.121 | 0.001218 |
ORF1ab/nsp3 | 309 | D309Y | Gac | Tac | 9 | 9 | AY.42 | 0.000362 |
ORF1ab/nsp3 | 309 | D309del | GAC | --- | 9 | 9 | B.1.1.7 | 0.000008 |
ORF1ab/nsp3 | 309 | D309N | Gac | Aac | 9 | 9 | B.1.2 | 0.000079 |
ORF1ab/nsp3 | 309 | D309D | gaC | gaT | 9 | 9 | B.1.438.1 | 0.000965 |
ORF1ab/nsp3 | 309 | D309Y | Gac | Tac | 8 | 8 | AY.106 | 0.002679 |
ORF1ab/nsp3 | 309 | D309N | Gac | Aac | 8 | 8 | AY.120 | 0.000297 |
ORF1ab/nsp3 | 309 | D309Y | Gac | Tac | 8 | 8 | AY.23 | 0.000558 |
ORF1ab/nsp3 | 309 | D309Y | Gac | Tac | 8 | 8 | AY.46.6 | 0.000578 |
ORF1ab/nsp3 | 309 | D309Y | Gac | Tac | 8 | 8 | AY.79 | 0.009685 |
ORF1ab/nsp3 | 309 | D309del | GAC | --- | 8 | 8 | B.1 | 0.000073 |
ORF1ab/nsp3 | 309 | D309D | gaC | gaT | 7 | 7 | AY.102 | 0.000186 |
ORF1ab/nsp3 | 309 | D309D | gaC | gaT | 7 | 7 | AY.39 | 0.000173 |
ORF1ab/nsp3 | 309 | D309A | gAc | gCc | 7 | 7 | AY.4 | 0.000011 |
ORF1ab/nsp3 | 309 | D309Y | Gac | Tac | 7 | 7 | AY.5.3 | 0.002362 |
ORF1ab/nsp3 | 309 | D309D | gaC | gaT | 7 | 7 | B.1.160 | 0.000218 |
ORF1ab/nsp3 | 309 | D309D | gaC | gaT | 7 | 7 | B.1.258 | 0.000466 |
ORF1ab/nsp3 | 309 | D309D | gaC | gaT | 7 | 7 | B.1.469 | 0.025271 |
ORF1ab/nsp3 | 309 | D309D | gaC | gaT | 7 | 7 | B.1.554 | 0.030837 |
ORF1ab/nsp3 | 309 | D309N | Gac | Aac | 7 | 7 | B.1.617.2 | 0.000026 |
ORF1ab/nsp3 | 309 | D309D | gaC | gaT | 6 | 6 | AY.120 | 0.000223 |
ORF1ab/nsp3 | 309 | D309Y | Gac | Tac | 6 | 6 | AY.29 | 0.000095 |
ORF1ab/nsp3 | 309 | D309Y | Gac | Tac | 6 | 6 | AY.46 | 0.000624 |
ORF1ab/nsp3 | 309 | D309Y | Gac | Tac | 6 | 6 | AY.9 | 0.000406 |
ORF1ab/nsp3 | 309 | D309D | gaC | gaT | 6 | 6 | AY.9.2 | 0.00022 |
ORF1ab/nsp3 | 309 | D309Y | Gac | Tac | 6 | 6 | AY.99 | 0.006296 |
ORF1ab/nsp3 | 309 | D309N | Gac | Aac | 6 | 6 | B.1 | 0.000055 |
ORF1ab/nsp3 | 309 | D309Y | Gac | Tac | 6 | 6 | B.1.596 | 0.000523 |
ORF1ab/nsp3 | 309 | D309D | gaC | gaT | 6 | 6 | C.37 | 0.000696 |
ORF1ab/nsp3 | 309 | D309G | gAc | gGc | 6 | 6 | P.1 | 0.000095 |
ORF1ab/nsp3 | 309 | D309Y | Gac | Tac | 5 | 5 | AY.59 | 0.002648 |
ORF1ab/nsp3 | 309 | D309N | Gac | Aac | 5 | 5 | AY.75 | 0.00028 |
ORF1ab/nsp3 | 309 | D309E | gaC | gaA | 5 | 5 | B.1.160 | 0.000156 |
ORF1ab/nsp3 | 309 | D309D | gaC | gaT | 5 | 5 | B.1.177.47 | 0.064935 |
ORF1ab/nsp3 | 309 | D309D | gaC | gaT | 5 | 5 | B.1.617.1 | 0.000645 |
ORF1ab/nsp3 | 309 | D309D | gaC | gaT | 5 | 5 | P.1 | 0.000079 |
ORF1ab/nsp3 | 309 | D309N | Gac | Aac | 5 | 5 | Q.8 | 0.000825 |
ORF1ab/nsp3 | 309 | D309V | gAc | gTc | 3 | 4 | 0.166667 | |
ORF1ab/nsp3 | 309 | D309V | gAC | gTA | 1 | 4 | 0.055556 | |
ORF1ab/nsp3 | 309 | D309Y | Gac | Tac | 4 | 4 | AY.116 | 0.001147 |
ORF1ab/nsp3 | 309 | D309D | gaC | gaT | 4 | 4 | AY.119 | 0.000141 |
ORF1ab/nsp3 | 309 | D309Y | Gac | Tac | 4 | 4 | AY.47 | 0.000124 |
ORF1ab/nsp3 | 309 | D309Y | Gac | Tac | 4 | 4 | AY.8 | 0.002424 |
ORF1ab/nsp3 | 309 | D309Y | Gac | Tac | 4 | 4 | AY.82 | 0.005427 |
ORF1ab/nsp3 | 309 | D309Y | Gac | Tac | 4 | 4 | AY.96 | 0.008299 |
ORF1ab/nsp3 | 309 | D309Y | Gac | Tac | 4 | 4 | AY.98 | 0.000316 |
ORF1ab/nsp3 | 309 | D309Y | Gac | Tac | 4 | 4 | B.1 | 0.000037 |
ORF1ab/nsp3 | 309 | D309D | gaC | gaT | 4 | 4 | B.1.1.521 | 0.02139 |
ORF1ab/nsp3 | 309 | D309V | gAc | gTc | 4 | 4 | B.1.1.7 | 0.000004 |
ORF1ab/nsp3 | 309 | D309N | Gac | Aac | 4 | 4 | B.1.274 | 0.047619 |
ORF1ab/nsp3 | 309 | D309G | gAc | gGc | 4 | 4 | B.1.587 | 0.00759 |
ORF1ab/nsp3 | 309 | D309del | GAC | --- | 4 | 4 | B.1.621 | 0.000354 |
ORF1ab/nsp3 | 309 | D309N | Gac | Aac | 4 | 4 | P.1 | 0.000063 |
ORF1ab/nsp3 | 309 | D309H | Gac | Cac | 3 | 3 | All | 0.000001 |
ORF1ab/nsp3 | 309 | D309del1 | gAc | g-c | 2 | 3 | All | 0 |
ORF1ab/nsp3 | 309 | D309del1 | GaC | -aT | 1 | 3 | All | 0 |
ORF1ab/nsp3 | 309 | D309G | gAc | gGc | 3 | 3 | AY.103 | 0.000019 |
ORF1ab/nsp3 | 309 | D309Y | Gac | Tac | 3 | 3 | AY.110 | 0.000338 |
ORF1ab/nsp3 | 309 | D309Y | Gac | Tac | 3 | 3 | AY.113 | 0.000427 |
ORF1ab/nsp3 | 309 | D309Y | Gac | Tac | 3 | 3 | AY.12 | 0.000948 |
ORF1ab/nsp3 | 309 | D309D | gaC | gaT | 3 | 3 | AY.14 | 0.000264 |
ORF1ab/nsp3 | 309 | D309D | gaC | gaT | 3 | 3 | AY.23 | 0.000209 |
ORF1ab/nsp3 | 309 | D309D | gaC | gaT | 3 | 3 | AY.26 | 0.000085 |
ORF1ab/nsp3 | 309 | D309G | gAc | gGc | 3 | 3 | AY.3 | 0.00003 |
ORF1ab/nsp3 | 309 | D309G | gAc | gGc | 3 | 3 | AY.39 | 0.000074 |
ORF1ab/nsp3 | 309 | D309E | gaC | gaA | 3 | 3 | AY.4 | 0.000005 |
ORF1ab/nsp3 | 309 | D309del | GAC | --- | 3 | 3 | AY.43 | 0.000013 |
ORF1ab/nsp3 | 309 | D309N | Gac | Aac | 3 | 3 | AY.43 | 0.000013 |
ORF1ab/nsp3 | 309 | D309Y | Gac | Tac | 3 | 3 | AY.45 | 0.000365 |
ORF1ab/nsp3 | 309 | D309Y | Gac | Tac | 3 | 3 | AY.58 | 0.002722 |
ORF1ab/nsp3 | 309 | D309Y | Gac | Tac | 3 | 3 | AY.9.2 | 0.00011 |
ORF1ab/nsp3 | 309 | D309G | gAc | gGc | 3 | 3 | B.1 | 0.000027 |
ORF1ab/nsp3 | 309 | D309Y | Gac | Tac | 3 | 3 | B.1.1 | 0.000054 |
ORF1ab/nsp3 | 309 | D309N | Gac | Aac | 3 | 3 | B.1.1 | 0.000054 |
ORF1ab/nsp3 | 309 | D309N | Gac | Aac | 3 | 3 | B.1.177.30 | 0.007538 |
ORF1ab/nsp3 | 309 | D309D | gaC | gaT | 3 | 3 | B.1.177.35 | 0.002073 |
ORF1ab/nsp3 | 309 | D309G | gAc | gGc | 3 | 3 | B.1.2 | 0.000026 |
ORF1ab/nsp3 | 309 | D309G | gAc | gGc | 3 | 3 | B.1.232 | 0.001612 |
ORF1ab/nsp3 | 309 | D309Y | Gac | Tac | 3 | 3 | B.1.234 | 0.000396 |
ORF1ab/nsp3 | 309 | D309D | gaC | gaT | 3 | 3 | B.1.258.17 | 0.000312 |
ORF1ab/nsp3 | 309 | D309D | gaC | gaT | 3 | 3 | B.1.427 | 0.000151 |
ORF1ab/nsp3 | 309 | D309D | gaC | gaT | 3 | 3 | B.1.560 | 0.013889 |
ORF1ab/nsp3 | 309 | D309D | gaC | gaT | 3 | 3 | B.6 | 0.00273 |
ORF1ab/nsp3 | 309 | D309del | GAC | --- | 3 | 3 | C.37 | 0.000348 |
ORF1ab/nsp3 | 309 | D309del | GAC | --- | 3 | 3 | P.1.14 | 0.000143 |
ORF1ab/nsp3 | 309 | D309del | GAC | --- | 3 | 3 | P.1.7 | 0.000958 |
ORF1ab/nsp3 | 309 | D309A | gAc | gCc | 3 | 3 | U.3 | 0.011583 |
ORF1ab/nsp3 | 309 | D309del | GAC | --- | 2 | 2 | 0.111111 | |
ORF1ab/nsp3 | 309 | D309P | GAC | CCA | 2 | 2 | 0.111111 | |
ORF1ab/nsp3 | 309 | D309P | GAC | CCA | 2 | 2 | All | 0 |
ORF1ab/nsp3 | 309 | D309L | GAC | TTA | 1 | 2 | All | 0 |
ORF1ab/nsp3 | 309 | D309I | GAc | ATc | 1 | 2 | All | 0 |
ORF1ab/nsp3 | 309 | D309I | GAC | ATT | 1 | 2 | All | 0 |
ORF1ab/nsp3 | 309 | D309L | GAc | CTc | 1 | 2 | All | 0 |
ORF1ab/nsp3 | 309 | D309del | GAC | --- | 2 | 2 | AY.100 | 0.000092 |
ORF1ab/nsp3 | 309 | D309Y | Gac | Tac | 2 | 2 | AY.102 | 0.000053 |
ORF1ab/nsp3 | 309 | D309Y | Gac | Tac | 2 | 2 | AY.114 | 0.000462 |
ORF1ab/nsp3 | 309 | D309N | Gac | Aac | 2 | 2 | AY.117 | 0.000169 |
ORF1ab/nsp3 | 309 | D309Y | Gac | Tac | 2 | 2 | AY.118 | 0.000125 |
ORF1ab/nsp3 | 309 | D309Y | Gac | Tac | 2 | 2 | AY.120 | 0.000074 |
ORF1ab/nsp3 | 309 | D309Y | Gac | Tac | 2 | 2 | AY.13 | 0.000322 |
ORF1ab/nsp3 | 309 | D309D | gaC | gaT | 2 | 2 | AY.20 | 0.000078 |
ORF1ab/nsp3 | 309 | D309N | Gac | Aac | 2 | 2 | AY.23 | 0.000139 |
ORF1ab/nsp3 | 309 | D309D | gaC | gaT | 2 | 2 | AY.27 | 0.000129 |
ORF1ab/nsp3 | 309 | D309N | Gac | Aac | 2 | 2 | AY.3.1 | 0.000171 |
ORF1ab/nsp3 | 309 | D309D | gaC | gaT | 2 | 2 | AY.36 | 0.000296 |
ORF1ab/nsp3 | 309 | D309Y | Gac | Tac | 2 | 2 | AY.38 | 0.000999 |
ORF1ab/nsp3 | 309 | D309D | gaC | gaT | 2 | 2 | AY.4.5 | 0.000215 |
ORF1ab/nsp3 | 309 | D309N | Gac | Aac | 2 | 2 | AY.4.5 | 0.000215 |
ORF1ab/nsp3 | 309 | D309D | gaC | gaT | 2 | 2 | AY.45 | 0.000243 |
ORF1ab/nsp3 | 309 | D309D | gaC | gaT | 2 | 2 | AY.47 | 0.000062 |
ORF1ab/nsp3 | 309 | D309D | gaC | gaT | 2 | 2 | AY.5 | 0.000041 |
ORF1ab/nsp3 | 309 | D309Y | Gac | Tac | 2 | 2 | AY.62 | 0.000871 |
ORF1ab/nsp3 | 309 | D309D | gaC | gaT | 2 | 2 | AY.64 | 0.00119 |
ORF1ab/nsp3 | 309 | D309D | gaC | gaT | 2 | 2 | AY.7 | 0.000392 |
ORF1ab/nsp3 | 309 | D309Y | Gac | Tac | 2 | 2 | AY.73 | 0.001331 |
ORF1ab/nsp3 | 309 | D309D | gaC | gaT | 2 | 2 | AY.89 | 0.009804 |
ORF1ab/nsp3 | 309 | D309Y | Gac | Tac | 2 | 2 | AY.90 | 0.001369 |
ORF1ab/nsp3 | 309 | D309Y | Gac | Tac | 2 | 2 | B | 0.000256 |
ORF1ab/nsp3 | 309 | D309I | GAC | ATT | 1 | 2 | B.1.1 | 0.000018 |
ORF1ab/nsp3 | 309 | D309I | GAc | ATc | 1 | 2 | B.1.1 | 0.000018 |
ORF1ab/nsp3 | 309 | D309Y | Gac | Tac | 2 | 2 | B.1.1.214 | 0.000111 |
ORF1ab/nsp3 | 309 | D309A | gAc | gCc | 2 | 2 | B.1.1.7 | 0.000002 |
ORF1ab/nsp3 | 309 | D309H | Gac | Cac | 2 | 2 | B.1.1.7 | 0.000002 |
ORF1ab/nsp3 | 309 | D309D | gaC | gaT | 2 | 2 | B.1.1.70 | 0.000682 |
ORF1ab/nsp3 | 309 | D309A | gAc | gCc | 2 | 2 | B.1.177 | 0.000026 |
ORF1ab/nsp3 | 309 | D309D | gaC | gaT | 2 | 2 | B.1.177.30 | 0.005025 |
ORF1ab/nsp3 | 309 | D309Y | Gac | Tac | 2 | 2 | B.1.2 | 0.000018 |
ORF1ab/nsp3 | 309 | D309E | gaC | gaA | 2 | 2 | B.1.243 | 0.000139 |
ORF1ab/nsp3 | 309 | D309D | gaC | gaT | 2 | 2 | B.1.243 | 0.000139 |
ORF1ab/nsp3 | 309 | D309D | gaC | gaT | 2 | 2 | B.1.36 | 0.000292 |
ORF1ab/nsp3 | 309 | D309N | Gac | Aac | 2 | 2 | B.1.36 | 0.000292 |
ORF1ab/nsp3 | 309 | D309D | gaC | gaT | 2 | 2 | B.1.375 | 0.001639 |
ORF1ab/nsp3 | 309 | D309G | gAc | gGc | 2 | 2 | B.1.429 | 0.000047 |
ORF1ab/nsp3 | 309 | D309G | gAc | gGc | 2 | 2 | B.1.438.1 | 0.000215 |
ORF1ab/nsp3 | 309 | D309D | gaC | gaT | 2 | 2 | B.1.526 | 0.000047 |
ORF1ab/nsp3 | 309 | D309D | gaC | gaT | 2 | 2 | B.1.595 | 0.000522 |
ORF1ab/nsp3 | 309 | D309D | gaC | gaT | 2 | 2 | B.1.621 | 0.000177 |
ORF1ab/nsp3 | 309 | D309N | Gac | Aac | 2 | 2 | B.1.621 | 0.000177 |
ORF1ab/nsp3 | 309 | D309D | gaC | gaT | 2 | 2 | D.2 | 0.00015 |
ORF1ab/nsp3 | 309 | D309del | GAC | --- | 2 | 2 | N.6 | 0.014184 |
ORF1ab/nsp3 | 309 | D309E | gaC | gaA | 1 | 2 | P.1 | 0.000016 |
ORF1ab/nsp3 | 309 | D309E | gaC | gaG | 1 | 2 | P.1 | 0.000016 |
ORF1ab/nsp3 | 309 | D309Y | Gac | Tac | 1 | 1 | 0.055556 | |
ORF1ab/nsp3 | 309 | D309E | gaC | gaA | 1 | 1 | 0.055556 | |
ORF1ab/nsp3 | 309 | D309X | GaC | TaA | 1 | 1 | 0.055556 | |
ORF1ab/nsp3 | 309 | D309F | GAc | TTc | 1 | 1 | 0.055556 | |
ORF1ab/nsp3 | 309 | D309L | GAC | TTA | 1 | 1 | 0.055556 | |
ORF1ab/nsp3 | 309 | D309X | GaC | TaA | 1 | 1 | All | 0 |
ORF1ab/nsp3 | 309 | D309T | GAC | ACA | 1 | 1 | All | 0 |
ORF1ab/nsp3 | 309 | D309F | GAc | TTc | 1 | 1 | All | 0 |
ORF1ab/nsp3 | 309 | D309Y | Gac | Tac | 1 | 1 | AY.10 | 0.00053 |
ORF1ab/nsp3 | 309 | D309Y | Gac | Tac | 1 | 1 | AY.108 | 0.001103 |
ORF1ab/nsp3 | 309 | D309D | gaC | gaT | 1 | 1 | AY.109 | 0.00074 |
ORF1ab/nsp3 | 309 | D309N | Gac | Aac | 1 | 1 | AY.111 | 0.000183 |
ORF1ab/nsp3 | 309 | D309N | Gac | Aac | 1 | 1 | AY.113 | 0.000142 |
ORF1ab/nsp3 | 309 | D309G | gAc | gGc | 1 | 1 | AY.116 | 0.000287 |
ORF1ab/nsp3 | 309 | D309del | GAC | --- | 1 | 1 | AY.119 | 0.000035 |
ORF1ab/nsp3 | 309 | D309D | gaC | gaT | 1 | 1 | AY.13 | 0.000161 |
ORF1ab/nsp3 | 309 | D309N | Gac | Aac | 1 | 1 | AY.16.1 | 0.00047 |
ORF1ab/nsp3 | 309 | D309D | gaC | gaT | 1 | 1 | AY.16.1 | 0.00047 |
ORF1ab/nsp3 | 309 | D309Y | Gac | Tac | 1 | 1 | AY.17 | 0.008197 |
ORF1ab/nsp3 | 309 | D309del | GAC | --- | 1 | 1 | AY.23 | 0.00007 |
ORF1ab/nsp3 | 309 | D309del | GAC | --- | 1 | 1 | AY.24 | 0.000431 |
ORF1ab/nsp3 | 309 | D309G | gAc | gGc | 1 | 1 | AY.25 | 0.000006 |
ORF1ab/nsp3 | 309 | D309N | Gac | Aac | 1 | 1 | AY.25 | 0.000006 |
ORF1ab/nsp3 | 309 | D309del | GAC | --- | 1 | 1 | AY.26 | 0.000028 |
ORF1ab/nsp3 | 309 | D309Y | Gac | Tac | 1 | 1 | AY.27 | 0.000065 |
ORF1ab/nsp3 | 309 | D309D | gaC | gaT | 1 | 1 | AY.28 | 0.00189 |
ORF1ab/nsp3 | 309 | D309E | gaC | gaA | 1 | 1 | AY.29 | 0.000016 |
ORF1ab/nsp3 | 309 | D309D | gaC | gaT | 1 | 1 | AY.29.1 | 0.000221 |
ORF1ab/nsp3 | 309 | D309H | Gac | Cac | 1 | 1 | AY.3 | 0.00001 |
ORF1ab/nsp3 | 309 | D309N | Gac | Aac | 1 | 1 | AY.3 | 0.00001 |
ORF1ab/nsp3 | 309 | D309L | GAc | CTc | 1 | 1 | AY.30 | 0.000396 |
ORF1ab/nsp3 | 309 | D309D | gaC | gaT | 1 | 1 | AY.32 | 0.000532 |
ORF1ab/nsp3 | 309 | D309D | gaC | gaT | 1 | 1 | AY.33 | 0.000067 |
ORF1ab/nsp3 | 309 | D309A | gAc | gCc | 1 | 1 | AY.33 | 0.000067 |
ORF1ab/nsp3 | 309 | D309Y | Gac | Tac | 1 | 1 | AY.34.1 | 0.00051 |
ORF1ab/nsp3 | 309 | D309A | gAc | gCc | 1 | 1 | AY.39 | 0.000025 |
ORF1ab/nsp3 | 309 | D309N | Gac | Aac | 1 | 1 | AY.39.1 | 0.00004 |
ORF1ab/nsp3 | 309 | D309Y | Gac | Tac | 1 | 1 | AY.39.1 | 0.00004 |
ORF1ab/nsp3 | 309 | D309del | GAC | --- | 1 | 1 | AY.4 | 0.000002 |
ORF1ab/nsp3 | 309 | D309D | gaC | gaT | 1 | 1 | AY.4.2 | 0.000022 |
ORF1ab/nsp3 | 309 | D309del | GAC | --- | 1 | 1 | AY.4.5 | 0.000107 |
ORF1ab/nsp3 | 309 | D309A | gAc | gCc | 1 | 1 | AY.43 | 0.000004 |
ORF1ab/nsp3 | 309 | D309E | gaC | gaA | 1 | 1 | AY.44 | 0.000006 |
ORF1ab/nsp3 | 309 | D309del1 | GaC | -aT | 1 | 1 | AY.44 | 0.000006 |
ORF1ab/nsp3 | 309 | D309del | GAC | --- | 1 | 1 | AY.44 | 0.000006 |
ORF1ab/nsp3 | 309 | D309A | gAc | gCc | 1 | 1 | AY.44 | 0.000006 |
ORF1ab/nsp3 | 309 | D309Y | Gac | Tac | 1 | 1 | AY.46.1 | 0.001027 |
ORF1ab/nsp3 | 309 | D309N | Gac | Aac | 1 | 1 | AY.47 | 0.000031 |
ORF1ab/nsp3 | 309 | D309D | gaC | gaT | 1 | 1 | AY.5.3 | 0.000337 |
ORF1ab/nsp3 | 309 | D309Y | Gac | Tac | 1 | 1 | AY.54 | 0.000095 |
ORF1ab/nsp3 | 309 | D309Y | Gac | Tac | 1 | 1 | AY.56 | 0.001605 |
ORF1ab/nsp3 | 309 | D309N | Gac | Aac | 1 | 1 | AY.6 | 0.000041 |
ORF1ab/nsp3 | 309 | D309G | gAc | gGc | 1 | 1 | AY.6 | 0.000041 |
ORF1ab/nsp3 | 309 | D309Y | Gac | Tac | 1 | 1 | AY.61 | 0.000105 |
ORF1ab/nsp3 | 309 | D309D | gaC | gaT | 1 | 1 | AY.61 | 0.000105 |
ORF1ab/nsp3 | 309 | D309N | Gac | Aac | 1 | 1 | AY.64 | 0.000595 |
ORF1ab/nsp3 | 309 | D309D | gaC | gaT | 1 | 1 | AY.65 | 0.000533 |
ORF1ab/nsp3 | 309 | D309Y | Gac | Tac | 1 | 1 | AY.7.2 | 0.000559 |
ORF1ab/nsp3 | 309 | D309N | Gac | Aac | 1 | 1 | AY.73 | 0.000665 |
ORF1ab/nsp3 | 309 | D309N | Gac | Aac | 1 | 1 | AY.74 | 0.000116 |
ORF1ab/nsp3 | 309 | D309Y | Gac | Tac | 1 | 1 | AY.74 | 0.000116 |
ORF1ab/nsp3 | 309 | D309D | gaC | gaT | 1 | 1 | AY.75.1 | 0.00018 |
ORF1ab/nsp3 | 309 | D309E | gaC | gaG | 1 | 1 | AY.84 | 0.000437 |
ORF1ab/nsp3 | 309 | D309D | gaC | gaT | 1 | 1 | AY.85 | 0.000427 |
ORF1ab/nsp3 | 309 | D309Y | Gac | Tac | 1 | 1 | AY.87 | 0.000833 |
ORF1ab/nsp3 | 309 | D309D | gaC | gaT | 1 | 1 | AY.9.1 | 0.000084 |
ORF1ab/nsp3 | 309 | D309N | Gac | Aac | 1 | 1 | AY.93 | 0.000273 |
ORF1ab/nsp3 | 309 | D309D | gaC | gaT | 1 | 1 | AY.94 | 0.000443 |
ORF1ab/nsp3 | 309 | D309Y | Gac | Tac | 1 | 1 | AY.95 | 0.000761 |
ORF1ab/nsp3 | 309 | D309D | gaC | gaT | 1 | 1 | AY.98 | 0.000079 |
ORF1ab/nsp3 | 309 | D309D | gaC | gaT | 1 | 1 | AY.98.1 | 0.000048 |
ORF1ab/nsp3 | 309 | D309del | GAC | --- | 1 | 1 | AY.99 | 0.001049 |
ORF1ab/nsp3 | 309 | D309E | gaC | gaA | 1 | 1 | AY.99.1 | 0.001553 |
ORF1ab/nsp3 | 309 | D309D | gaC | gaT | 1 | 1 | AY.99.2 | 0.000092 |
ORF1ab/nsp3 | 309 | D309N | Gac | Aac | 1 | 1 | B | 0.000128 |
ORF1ab/nsp3 | 309 | D309D | gaC | gaT | 1 | 1 | B | 0.000128 |
ORF1ab/nsp3 | 309 | D309V | gAc | gTc | 1 | 1 | B | 0.000128 |
ORF1ab/nsp3 | 309 | D309E | gaC | gaA | 1 | 1 | B.1 | 0.000009 |
ORF1ab/nsp3 | 309 | D309G | gAc | gGc | 1 | 1 | B.1.1 | 0.000018 |
ORF1ab/nsp3 | 309 | D309del | GAC | --- | 1 | 1 | B.1.1 | 0.000018 |
ORF1ab/nsp3 | 309 | D309del1 | gAc | g-c | 1 | 1 | B.1.1 | 0.000018 |
ORF1ab/nsp3 | 309 | D309D | gaC | gaT | 1 | 1 | B.1.1.141 | 0.002012 |
ORF1ab/nsp3 | 309 | D309G | gAc | gGc | 1 | 1 | B.1.1.205 | 0.003717 |
ORF1ab/nsp3 | 309 | D309D | gaC | gaT | 1 | 1 | B.1.1.214 | 0.000055 |
ORF1ab/nsp3 | 309 | D309D | gaC | gaT | 1 | 1 | B.1.1.222 | 0.000204 |
ORF1ab/nsp3 | 309 | D309D | gaC | gaT | 1 | 1 | B.1.1.225 | 0.007194 |
ORF1ab/nsp3 | 309 | D309D | gaC | gaT | 1 | 1 | B.1.1.258 | 0.003257 |
ORF1ab/nsp3 | 309 | D309D | gaC | gaT | 1 | 1 | B.1.1.28 | 0.000311 |
ORF1ab/nsp3 | 309 | D309N | Gac | Aac | 1 | 1 | B.1.1.28 | 0.000311 |
ORF1ab/nsp3 | 309 | D309N | Gac | Aac | 1 | 1 | B.1.1.306 | 0.000438 |
ORF1ab/nsp3 | 309 | D309D | gaC | gaT | 1 | 1 | B.1.1.318 | 0.000302 |
ORF1ab/nsp3 | 309 | D309N | Gac | Aac | 1 | 1 | B.1.1.326 | 0.001761 |
ORF1ab/nsp3 | 309 | D309del | GAC | --- | 1 | 1 | B.1.1.33 | 0.000421 |
ORF1ab/nsp3 | 309 | D309del | GAC | --- | 1 | 1 | B.1.1.348 | 0.000796 |
ORF1ab/nsp3 | 309 | D309D | gaC | gaT | 1 | 1 | B.1.1.434 | 0.000349 |
ORF1ab/nsp3 | 309 | D309D | gaC | gaT | 1 | 1 | B.1.1.445 | 0.037037 |
ORF1ab/nsp3 | 309 | D309Y | Gac | Tac | 1 | 1 | B.1.1.452 | 0.111111 |
ORF1ab/nsp3 | 309 | D309Y | Gac | Tac | 1 | 1 | B.1.1.519 | 0.00004 |
ORF1ab/nsp3 | 309 | D309Y | Gac | Tac | 1 | 1 | B.1.110.3 | 0.000718 |
ORF1ab/nsp3 | 309 | D309D | gaC | gaT | 1 | 1 | B.1.111 | 0.001175 |
ORF1ab/nsp3 | 309 | D309D | gaC | gaT | 1 | 1 | B.1.147 | 0.000756 |
ORF1ab/nsp3 | 309 | D309N | Gac | Aac | 1 | 1 | B.1.160 | 0.000031 |
ORF1ab/nsp3 | 309 | D309G | gAc | gGc | 1 | 1 | B.1.160 | 0.000031 |
ORF1ab/nsp3 | 309 | D309D | gaC | gaT | 1 | 1 | B.1.160.30 | 0.002976 |
ORF1ab/nsp3 | 309 | D309Y | Gac | Tac | 1 | 1 | B.1.160.7 | 0.002079 |
ORF1ab/nsp3 | 309 | D309Y | Gac | Tac | 1 | 1 | B.1.177 | 0.000013 |
ORF1ab/nsp3 | 309 | D309N | Gac | Aac | 1 | 1 | B.1.177 | 0.000013 |
ORF1ab/nsp3 | 309 | D309del | GAC | --- | 1 | 1 | B.1.177 | 0.000013 |
ORF1ab/nsp3 | 309 | D309D | gaC | gaT | 1 | 1 | B.1.177.10 | 0.000878 |
ORF1ab/nsp3 | 309 | D309D | gaC | gaT | 1 | 1 | B.1.177.12 | 0.000152 |
ORF1ab/nsp3 | 309 | D309D | gaC | gaT | 1 | 1 | B.1.177.15 | 0.000631 |
ORF1ab/nsp3 | 309 | D309D | gaC | gaT | 1 | 1 | B.1.177.3 | 0.007634 |
ORF1ab/nsp3 | 309 | D309N | Gac | Aac | 1 | 1 | B.1.177.53 | 0.002392 |
ORF1ab/nsp3 | 309 | D309V | gAc | gTc | 1 | 1 | B.1.177.6 | 0.000977 |
ORF1ab/nsp3 | 309 | D309D | gaC | gaT | 1 | 1 | B.1.177.62 | 0.001192 |
ORF1ab/nsp3 | 309 | D309D | gaC | gaT | 1 | 1 | B.1.177.73 | 0.000566 |
ORF1ab/nsp3 | 309 | D309D | gaC | gaT | 1 | 1 | B.1.177.84 | 0.006667 |
ORF1ab/nsp3 | 309 | D309D | gaC | gaT | 1 | 1 | B.1.177.86 | 0.000183 |
ORF1ab/nsp3 | 309 | D309T | GAC | ACA | 1 | 1 | B.1.2 | 0.000009 |
ORF1ab/nsp3 | 309 | D309del | GAC | --- | 1 | 1 | B.1.2 | 0.000009 |
ORF1ab/nsp3 | 309 | D309del | GAC | --- | 1 | 1 | B.1.218 | 0.005155 |
ORF1ab/nsp3 | 309 | D309D | gaC | gaT | 1 | 1 | B.1.221 | 0.000071 |
ORF1ab/nsp3 | 309 | D309D | gaC | gaT | 1 | 1 | B.1.234 | 0.000132 |
ORF1ab/nsp3 | 309 | D309del | GAC | --- | 1 | 1 | B.1.243 | 0.00007 |
ORF1ab/nsp3 | 309 | D309N | Gac | Aac | 1 | 1 | B.1.258.21 | 0.007752 |
ORF1ab/nsp3 | 309 | D309D | gaC | gaT | 1 | 1 | B.1.258.4 | 0.003448 |
ORF1ab/nsp3 | 309 | D309N | Gac | Aac | 1 | 1 | B.1.3 | 0.002618 |
ORF1ab/nsp3 | 309 | D309Y | Gac | Tac | 1 | 1 | B.1.324 | 0.001605 |
ORF1ab/nsp3 | 309 | D309E | gaC | gaA | 1 | 1 | B.1.351 | 0.00003 |
ORF1ab/nsp3 | 309 | D309N | Gac | Aac | 1 | 1 | B.1.351 | 0.00003 |
ORF1ab/nsp3 | 309 | D309D | gaC | gaT | 1 | 1 | B.1.351 | 0.00003 |
ORF1ab/nsp3 | 309 | D309D | gaC | gaT | 1 | 1 | B.1.351.2 | 0.000303 |
ORF1ab/nsp3 | 309 | D309del | GAC | --- | 1 | 1 | B.1.36 | 0.000146 |
ORF1ab/nsp3 | 309 | D309D | gaC | gaT | 1 | 1 | B.1.367 | 0.000792 |
ORF1ab/nsp3 | 309 | D309D | gaC | gaT | 1 | 1 | B.1.404 | 0.001302 |
ORF1ab/nsp3 | 309 | D309N | Gac | Aac | 1 | 1 | B.1.427 | 0.00005 |
ORF1ab/nsp3 | 309 | D309del | GAC | --- | 1 | 1 | B.1.429 | 0.000024 |
ORF1ab/nsp3 | 309 | D309Y | Gac | Tac | 1 | 1 | B.1.429 | 0.000024 |
ORF1ab/nsp3 | 309 | D309N | Gac | Aac | 1 | 1 | B.1.429 | 0.000024 |
ORF1ab/nsp3 | 309 | D309N | Gac | Aac | 1 | 1 | B.1.439 | 0.005917 |
ORF1ab/nsp3 | 309 | D309E | gaC | gaG | 1 | 1 | B.1.445 | 0.011765 |
ORF1ab/nsp3 | 309 | D309A | gAc | gCc | 1 | 1 | B.1.462 | 0.007246 |
ORF1ab/nsp3 | 309 | D309E | gaC | gaG | 1 | 1 | B.1.525 | 0.000113 |
ORF1ab/nsp3 | 309 | D309E | gaC | gaA | 1 | 1 | B.1.526 | 0.000024 |
ORF1ab/nsp3 | 309 | D309G | gAc | gGc | 1 | 1 | B.1.526 | 0.000024 |
ORF1ab/nsp3 | 309 | D309N | Gac | Aac | 1 | 1 | B.1.561 | 0.000397 |
ORF1ab/nsp3 | 309 | D309D | gaC | gaT | 1 | 1 | B.1.562 | 0.018519 |
ORF1ab/nsp3 | 309 | D309D | gaC | gaT | 1 | 1 | B.1.569 | 0.014493 |
ORF1ab/nsp3 | 309 | D309Y | Gac | Tac | 1 | 1 | B.1.595 | 0.000261 |
ORF1ab/nsp3 | 309 | D309D | gaC | gaT | 1 | 1 | B.1.595.4 | 0.007299 |
ORF1ab/nsp3 | 309 | D309del | GAC | --- | 1 | 1 | B.1.596 | 0.000087 |
ORF1ab/nsp3 | 309 | D309D | gaC | gaT | 1 | 1 | B.1.596 | 0.000087 |
ORF1ab/nsp3 | 309 | D309Y | Gac | Tac | 1 | 1 | B.1.599 | 0.00365 |
ORF1ab/nsp3 | 309 | D309del | GAC | --- | 1 | 1 | B.1.617.2 | 0.000004 |
ORF1ab/nsp3 | 309 | D309del | GAC | --- | 1 | 1 | B.1.627 | 0.00202 |
ORF1ab/nsp3 | 309 | D309G | gAc | gGc | 1 | 1 | B.1.628 | 0.000352 |
ORF1ab/nsp3 | 309 | D309G | gAc | gGc | 1 | 1 | B.1.67 | 0.043478 |
ORF1ab/nsp3 | 309 | D309N | Gac | Aac | 1 | 1 | B.3 | 0.000831 |
ORF1ab/nsp3 | 309 | D309Y | Gac | Tac | 1 | 1 | B.60 | 0.015873 |
ORF1ab/nsp3 | 309 | D309G | gAc | gGc | 1 | 1 | C.36 | 0.000911 |
ORF1ab/nsp3 | 309 | D309N | Gac | Aac | 1 | 1 | C.37 | 0.000116 |
ORF1ab/nsp3 | 309 | D309Y | Gac | Tac | 1 | 1 | D.2 | 0.000075 |
ORF1ab/nsp3 | 309 | D309N | Gac | Aac | 1 | 1 | D.2 | 0.000075 |
ORF1ab/nsp3 | 309 | D309D | gaC | gaT | 1 | 1 | L.1 | 0.001905 |
ORF1ab/nsp3 | 309 | D309V | gAc | gTc | 1 | 1 | P.1 | 0.000016 |
ORF1ab/nsp3 | 309 | D309del1 | gAc | g-c | 1 | 1 | P.1 | 0.000016 |
ORF1ab/nsp3 | 309 | D309del | GAC | --- | 1 | 1 | P.1.1 | 0.000318 |
ORF1ab/nsp3 | 309 | D309del | GAC | --- | 1 | 1 | P.1.10 | 0.000269 |
ORF1ab/nsp3 | 309 | D309del | GAC | --- | 1 | 1 | P.1.13 | 0.000898 |
ORF1ab/nsp3 | 309 | D309N | Gac | Aac | 1 | 1 | P.1.14 | 0.000048 |
ORF1ab/nsp3 | 309 | D309D | gaC | gaT | 1 | 1 | P.1.14 | 0.000048 |
ORF1ab/nsp3 | 309 | D309del | GAC | --- | 1 | 1 | P.1.2 | 0.001156 |
ORF1ab/nsp3 | 309 | D309D | gaC | gaT | 1 | 1 | P.1.7 | 0.000319 |
ORF1ab/nsp3 | 309 | D309D | gaC | gaT | 1 | 1 | P.2 | 0.000187 |
ORF1ab/nsp3 | 309 | D309G | gAC | gGG | 1 | 1 | Q.8 | 0.000165 |
ORF1ab/nsp3 | 309 | D309A | gAc | gCc | 1 | 1 | R.1 | 0.00009 |
CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk
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