CoV-GLUE | Mutations | Mutation
Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):
ORF | CodonNum | Mut | ORF1abMut | MutType | RefCodon | MutCodon | AACount | CodonCount | CodonProp | Genome Position |
ORF1ab/nsp3 | 305 | N305N | N1123N | syn | aaC | aaT | 2996 | 2996 | 1 | 3632-3634 |
ORF1ab/nsp3 | 305 | N305S | N1123S | nonsyn | aAc | aGc | 334 | 334 | 1 | 3632-3634 |
ORF1ab/nsp3 | 305 | N305K | N1123K | nonsyn | aaC | aaA | 306 | 304 | 0.993464 | 3632-3634 |
ORF1ab/nsp3 | 305 | N305K | N1123K | nonsyn | aaC | aaG | 306 | 2 | 0.00653595 | 3632-3634 |
ORF1ab/nsp3 | 305 | N305D | N1123D | nonsyn | Aac | Gac | 139 | 139 | 1 | 3632-3634 |
ORF1ab/nsp3 | 305 | N305del | N1123del | del | AAC | --- | 117 | 117 | 1 | 3632-3634 |
ORF1ab/nsp3 | 305 | N305T | N1123T | nonsyn | aAc | aCc | 31 | 31 | 1 | 3632-3634 |
ORF1ab/nsp3 | 305 | N305Y | N1123Y | nonsyn | Aac | Tac | 16 | 14 | 0.875 | 3632-3634 |
ORF1ab/nsp3 | 305 | N305Y | N1123Y | nonsyn | AaC | TaT | 16 | 2 | 0.125 | 3632-3634 |
ORF1ab/nsp3 | 305 | N305I | N1123I | nonsyn | aAc | aTc | 5 | 5 | 1 | 3632-3634 |
ORF1ab/nsp3 | 305 | N305H | N1123H | nonsyn | Aac | Cac | 4 | 4 | 1 | 3632-3634 |
ORF1ab/nsp3 | 305 | N305X | N1123X | nonsyn | AaC | TaA | 3 | 3 | 1 | 3632-3634 |
ORF1ab/nsp3 | 305 | N305del2 | N1123del2 | del | AAC | --N | 3 | 3 | 1 | 3632-3634 |
ORF1ab/nsp3 | 305 | N305del1 | N1123del1 | del | AAC | -GT | 2 | 1 | 0.5 | 3632-3634 |
ORF1ab/nsp3 | 305 | N305del1 | N1123del1 | del | AAC | -NN | 2 | 1 | 0.5 | 3632-3634 |
ORF1ab/nsp3 | 305 | N305G | N1123G | nonsyn | AAc | GGc | 1 | 1 | 1 | 3632-3634 |
ORF1ab/nsp3 | 305 | N305F | N1123F | nonsyn | AAc | TTc | 1 | 1 | 1 | 3632-3634 |
ORF1ab/nsp3 | 305 | N305Q | N1123Q | nonsyn | AaC | CaA | 1 | 1 | 1 | 3632-3634 |
Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):
ORF | CodonNum | Mut | RefCodon | MutCodon | CodonCount | AACount | Lineage | LineageCodonProp |
ORF1ab/nsp3 | 305 | N305N | aaC | aaT | 2996 | 2996 | All | 0.000573 |
ORF1ab/nsp3 | 305 | N305N | aaC | aaT | 669 | 669 | B.1.1.7 | 0.000599 |
ORF1ab/nsp3 | 305 | N305N | aaC | aaT | 445 | 445 | B.1.210 | 0.948827 |
ORF1ab/nsp3 | 305 | N305N | aaC | aaT | 371 | 371 | B.1.2 | 0.003267 |
ORF1ab/nsp3 | 305 | N305S | aAc | aGc | 334 | 334 | All | 0.000064 |
ORF1ab/nsp3 | 305 | N305N | aaC | aaT | 310 | 310 | AY.56 | 0.497592 |
ORF1ab/nsp3 | 305 | N305K | aaC | aaA | 304 | 306 | All | 0.000058 |
ORF1ab/nsp3 | 305 | N305K | aaC | aaG | 2 | 306 | All | 0 |
ORF1ab/nsp3 | 305 | N305N | aaC | aaT | 222 | 222 | AY.4 | 0.000346 |
ORF1ab/nsp3 | 305 | N305D | Aac | Gac | 139 | 139 | All | 0.000027 |
ORF1ab/nsp3 | 305 | N305N | aaC | aaT | 127 | 127 | AY.43 | 0.000563 |
ORF1ab/nsp3 | 305 | N305K | aaC | aaA | 119 | 119 | B.1.1.7 | 0.000107 |
ORF1ab/nsp3 | 305 | N305del | AAC | --- | 117 | 117 | All | 0.000022 |
ORF1ab/nsp3 | 305 | N305S | aAc | aGc | 87 | 87 | B.1.617.2 | 0.000328 |
ORF1ab/nsp3 | 305 | N305N | aaC | aaT | 80 | 80 | B.1.177 | 0.001053 |
ORF1ab/nsp3 | 305 | N305N | aaC | aaT | 77 | 77 | AY.25 | 0.000463 |
ORF1ab/nsp3 | 305 | N305N | aaC | aaT | 76 | 76 | AY.3 | 0.000756 |
ORF1ab/nsp3 | 305 | N305S | aAc | aGc | 74 | 74 | AY.103 | 0.000459 |
ORF1ab/nsp3 | 305 | N305S | aAc | aGc | 64 | 64 | B.1.1.7 | 0.000057 |
ORF1ab/nsp3 | 305 | N305S | aAc | aGc | 56 | 56 | B.1.574 | 0.12043 |
ORF1ab/nsp3 | 305 | N305N | aaC | aaT | 51 | 51 | B.1 | 0.000467 |
ORF1ab/nsp3 | 305 | N305N | aaC | aaT | 45 | 45 | AY.103 | 0.000279 |
ORF1ab/nsp3 | 305 | N305N | aaC | aaT | 44 | 44 | AY.39 | 0.001087 |
ORF1ab/nsp3 | 305 | N305N | aaC | aaT | 43 | 43 | AY.26 | 0.001217 |
ORF1ab/nsp3 | 305 | N305N | aaC | aaT | 37 | 37 | C.16 | 0.039236 |
ORF1ab/nsp3 | 305 | N305K | aaC | aaA | 35 | 35 | AY.103 | 0.000217 |
ORF1ab/nsp3 | 305 | N305D | Aac | Gac | 35 | 35 | AY.4 | 0.000054 |
ORF1ab/nsp3 | 305 | N305N | aaC | aaT | 35 | 35 | B.1.617.2 | 0.000132 |
ORF1ab/nsp3 | 305 | N305T | aAc | aCc | 31 | 31 | All | 0.000006 |
ORF1ab/nsp3 | 305 | N305K | aaC | aaA | 27 | 27 | AY.43 | 0.00012 |
ORF1ab/nsp3 | 305 | N305D | Aac | Gac | 24 | 24 | B.1.177.58 | 0.031957 |
ORF1ab/nsp3 | 305 | N305del | AAC | --- | 21 | 21 | P.1.15 | 0.004879 |
ORF1ab/nsp3 | 305 | N305del | AAC | --- | 17 | 17 | P.1 | 0.000268 |
ORF1ab/nsp3 | 305 | N305Y | Aac | Tac | 14 | 16 | All | 0.000003 |
ORF1ab/nsp3 | 305 | N305Y | AaC | TaT | 2 | 16 | All | 0 |
ORF1ab/nsp3 | 305 | N305N | aaC | aaT | 16 | 16 | AY.47 | 0.000498 |
ORF1ab/nsp3 | 305 | N305D | Aac | Gac | 15 | 15 | B.1.1.7 | 0.000013 |
ORF1ab/nsp3 | 305 | N305N | aaC | aaT | 15 | 15 | D.2 | 0.001126 |
ORF1ab/nsp3 | 305 | N305K | aaC | aaA | 13 | 13 | AY.25 | 0.000078 |
ORF1ab/nsp3 | 305 | N305N | aaC | aaT | 13 | 13 | B.1.1 | 0.000236 |
ORF1ab/nsp3 | 305 | N305N | aaC | aaT | 13 | 13 | B.1.429 | 0.000306 |
ORF1ab/nsp3 | 305 | N305K | aaC | aaA | 12 | 12 | AY.44 | 0.000073 |
ORF1ab/nsp3 | 305 | N305N | aaC | aaT | 12 | 12 | AY.44 | 0.000073 |
ORF1ab/nsp3 | 305 | N305S | aAc | aGc | 12 | 12 | AY.85 | 0.005126 |
ORF1ab/nsp3 | 305 | N305N | aaC | aaT | 12 | 12 | AY.93 | 0.003277 |
ORF1ab/nsp3 | 305 | N305N | aaC | aaT | 12 | 12 | AZ.1 | 0.010408 |
ORF1ab/nsp3 | 305 | N305K | aaC | aaA | 10 | 12 | P.1 | 0.000158 |
ORF1ab/nsp3 | 305 | N305K | aaC | aaG | 2 | 12 | P.1 | 0.000032 |
ORF1ab/nsp3 | 305 | N305T | aAc | aCc | 11 | 11 | B.1.311 | 0.00302 |
ORF1ab/nsp3 | 305 | N305N | aaC | aaT | 10 | 10 | A.1 | 0.002818 |
ORF1ab/nsp3 | 305 | N305K | aaC | aaA | 10 | 10 | AY.4 | 0.000016 |
ORF1ab/nsp3 | 305 | N305N | aaC | aaT | 10 | 10 | B.1.1.1 | 0.003267 |
ORF1ab/nsp3 | 305 | N305del | AAC | --- | 10 | 10 | P.1.12 | 0.00484 |
ORF1ab/nsp3 | 305 | N305N | aaC | aaT | 9 | 9 | AY.13 | 0.001449 |
ORF1ab/nsp3 | 305 | N305N | aaC | aaT | 9 | 9 | AY.29 | 0.000142 |
ORF1ab/nsp3 | 305 | N305T | aAc | aCc | 9 | 9 | B.1.351 | 0.000268 |
ORF1ab/nsp3 | 305 | N305K | aaC | aaA | 9 | 9 | B.1.617.2 | 0.000034 |
ORF1ab/nsp3 | 305 | N305K | aaC | aaA | 8 | 8 | AY.102 | 0.000212 |
ORF1ab/nsp3 | 305 | N305del | AAC | --- | 8 | 8 | B.1 | 0.000073 |
ORF1ab/nsp3 | 305 | N305K | aaC | aaA | 8 | 8 | B.1.1 | 0.000145 |
ORF1ab/nsp3 | 305 | N305del | AAC | --- | 8 | 8 | B.1.1 | 0.000145 |
ORF1ab/nsp3 | 305 | N305D | Aac | Gac | 8 | 8 | B.1.243 | 0.000557 |
ORF1ab/nsp3 | 305 | N305D | Aac | Gac | 8 | 8 | B.1.617.2 | 0.00003 |
ORF1ab/nsp3 | 305 | N305D | Aac | Gac | 7 | 7 | AY.100 | 0.000322 |
ORF1ab/nsp3 | 305 | N305N | aaC | aaT | 7 | 7 | P.1 | 0.00011 |
ORF1ab/nsp3 | 305 | N305K | aaC | aaA | 7 | 7 | P.1.14 | 0.000335 |
ORF1ab/nsp3 | 305 | N305N | aaC | aaT | 6 | 6 | AY.102 | 0.000159 |
ORF1ab/nsp3 | 305 | N305N | aaC | aaT | 6 | 6 | AY.33 | 0.000401 |
ORF1ab/nsp3 | 305 | N305N | aaC | aaT | 6 | 6 | AY.42 | 0.000241 |
ORF1ab/nsp3 | 305 | N305D | Aac | Gac | 6 | 6 | AY.43 | 0.000027 |
ORF1ab/nsp3 | 305 | N305N | aaC | aaT | 6 | 6 | AY.9.2 | 0.00022 |
ORF1ab/nsp3 | 305 | N305N | aaC | aaT | 6 | 6 | B.1.1.277 | 0.004552 |
ORF1ab/nsp3 | 305 | N305del | AAC | --- | 6 | 6 | B.1.1.7 | 0.000005 |
ORF1ab/nsp3 | 305 | N305N | aaC | aaT | 6 | 6 | B.1.234 | 0.000792 |
ORF1ab/nsp3 | 305 | N305N | aaC | aaT | 6 | 6 | B.1.427 | 0.000303 |
ORF1ab/nsp3 | 305 | N305I | aAc | aTc | 5 | 5 | All | 0.000001 |
ORF1ab/nsp3 | 305 | N305N | aaC | aaT | 5 | 5 | AY.119 | 0.000177 |
ORF1ab/nsp3 | 305 | N305N | aaC | aaT | 5 | 5 | AY.5 | 0.000103 |
ORF1ab/nsp3 | 305 | N305N | aaC | aaT | 5 | 5 | AY.6 | 0.000206 |
ORF1ab/nsp3 | 305 | N305N | aaC | aaT | 5 | 5 | AY.61 | 0.000524 |
ORF1ab/nsp3 | 305 | N305N | aaC | aaT | 5 | 5 | AY.75.1 | 0.000902 |
ORF1ab/nsp3 | 305 | N305N | aaC | aaT | 5 | 5 | B.1.1.135 | 0.023474 |
ORF1ab/nsp3 | 305 | N305N | aaC | aaT | 5 | 5 | B.1.36 | 0.00073 |
ORF1ab/nsp3 | 305 | N305N | aaC | aaT | 5 | 5 | B.1.596 | 0.000436 |
ORF1ab/nsp3 | 305 | N305N | aaC | aaT | 5 | 5 | P.1.7 | 0.001596 |
ORF1ab/nsp3 | 305 | N305H | Aac | Cac | 4 | 4 | All | 0.000001 |
ORF1ab/nsp3 | 305 | N305D | Aac | Gac | 4 | 4 | AY.116.1 | 0.001246 |
ORF1ab/nsp3 | 305 | N305S | aAc | aGc | 4 | 4 | AY.46.5 | 0.000794 |
ORF1ab/nsp3 | 305 | N305D | Aac | Gac | 4 | 4 | AY.6 | 0.000165 |
ORF1ab/nsp3 | 305 | N305K | aaC | aaA | 4 | 4 | B.1 | 0.000037 |
ORF1ab/nsp3 | 305 | N305T | aAc | aCc | 4 | 4 | B.1.1.7 | 0.000004 |
ORF1ab/nsp3 | 305 | N305N | aaC | aaT | 4 | 4 | B.1.243 | 0.000278 |
ORF1ab/nsp3 | 305 | N305N | aaC | aaT | 4 | 4 | B.1.351 | 0.000119 |
ORF1ab/nsp3 | 305 | N305N | aaC | aaT | 4 | 4 | B.1.36.8 | 0.004 |
ORF1ab/nsp3 | 305 | N305N | aaC | aaT | 4 | 4 | B.1.369 | 0.001141 |
ORF1ab/nsp3 | 305 | N305del | AAC | --- | 4 | 4 | B.1.621 | 0.000354 |
ORF1ab/nsp3 | 305 | N305N | aaC | aaT | 4 | 4 | B.1.637 | 0.000292 |
ORF1ab/nsp3 | 305 | N305N | aaC | aaT | 4 | 4 | P.2 | 0.000747 |
ORF1ab/nsp3 | 305 | N305del2 | AAC | --N | 3 | 3 | All | 0.000001 |
ORF1ab/nsp3 | 305 | N305X | AaC | TaA | 3 | 3 | All | 0.000001 |
ORF1ab/nsp3 | 305 | N305N | aaC | aaT | 3 | 3 | AY.120 | 0.000112 |
ORF1ab/nsp3 | 305 | N305D | Aac | Gac | 3 | 3 | AY.25 | 0.000018 |
ORF1ab/nsp3 | 305 | N305K | aaC | aaA | 3 | 3 | AY.29 | 0.000047 |
ORF1ab/nsp3 | 305 | N305S | aAc | aGc | 3 | 3 | AY.29 | 0.000047 |
ORF1ab/nsp3 | 305 | N305N | aaC | aaT | 3 | 3 | AY.3.1 | 0.000256 |
ORF1ab/nsp3 | 305 | N305K | aaC | aaA | 3 | 3 | AY.32 | 0.001597 |
ORF1ab/nsp3 | 305 | N305S | aAc | aGc | 3 | 3 | AY.4 | 0.000005 |
ORF1ab/nsp3 | 305 | N305del | AAC | --- | 3 | 3 | AY.43 | 0.000013 |
ORF1ab/nsp3 | 305 | N305D | Aac | Gac | 3 | 3 | AY.44 | 0.000018 |
ORF1ab/nsp3 | 305 | N305N | aaC | aaT | 3 | 3 | AY.46.4 | 0.000494 |
ORF1ab/nsp3 | 305 | N305Y | Aac | Tac | 3 | 3 | AY.77 | 0.003382 |
ORF1ab/nsp3 | 305 | N305N | aaC | aaT | 3 | 3 | AY.9 | 0.000203 |
ORF1ab/nsp3 | 305 | N305del2 | AAC | --N | 3 | 3 | B.1.1 | 0.000054 |
ORF1ab/nsp3 | 305 | N305N | aaC | aaT | 3 | 3 | B.1.1.222 | 0.000612 |
ORF1ab/nsp3 | 305 | N305N | aaC | aaT | 3 | 3 | B.1.1.318 | 0.000905 |
ORF1ab/nsp3 | 305 | N305S | aAc | aGc | 3 | 3 | B.1.1.519 | 0.000119 |
ORF1ab/nsp3 | 305 | N305S | aAc | aGc | 3 | 3 | B.1.177 | 0.00004 |
ORF1ab/nsp3 | 305 | N305Y | Aac | Tac | 3 | 3 | B.1.2 | 0.000026 |
ORF1ab/nsp3 | 305 | N305K | aaC | aaA | 3 | 3 | B.1.36.16 | 0.004274 |
ORF1ab/nsp3 | 305 | N305N | aaC | aaT | 3 | 3 | B.1.609 | 0.001438 |
ORF1ab/nsp3 | 305 | N305N | aaC | aaT | 3 | 3 | B.6 | 0.00273 |
ORF1ab/nsp3 | 305 | N305del | AAC | --- | 3 | 3 | C.37 | 0.000348 |
ORF1ab/nsp3 | 305 | N305del | AAC | --- | 3 | 3 | P.1.14 | 0.000143 |
ORF1ab/nsp3 | 305 | N305del | AAC | --- | 3 | 3 | P.1.7 | 0.000958 |
ORF1ab/nsp3 | 305 | N305T | aAc | aCc | 2 | 2 | 0.111111 | |
ORF1ab/nsp3 | 305 | N305H | Aac | Cac | 2 | 2 | 0.111111 | |
ORF1ab/nsp3 | 305 | N305del | AAC | --- | 2 | 2 | 0.111111 | |
ORF1ab/nsp3 | 305 | N305N | aaC | aaT | 2 | 2 | A.27 | 0.003311 |
ORF1ab/nsp3 | 305 | N305del1 | AAC | -GT | 1 | 2 | All | 0 |
ORF1ab/nsp3 | 305 | N305del1 | AAC | -NN | 1 | 2 | All | 0 |
ORF1ab/nsp3 | 305 | N305del | AAC | --- | 2 | 2 | AY.100 | 0.000092 |
ORF1ab/nsp3 | 305 | N305N | aaC | aaT | 2 | 2 | AY.118 | 0.000125 |
ORF1ab/nsp3 | 305 | N305K | aaC | aaA | 2 | 2 | AY.26 | 0.000057 |
ORF1ab/nsp3 | 305 | N305D | Aac | Gac | 2 | 2 | AY.3 | 0.00002 |
ORF1ab/nsp3 | 305 | N305K | aaC | aaA | 2 | 2 | AY.39 | 0.000049 |
ORF1ab/nsp3 | 305 | N305S | aAc | aGc | 2 | 2 | AY.39 | 0.000049 |
ORF1ab/nsp3 | 305 | N305N | aaC | aaT | 2 | 2 | AY.39.1 | 0.000079 |
ORF1ab/nsp3 | 305 | N305del | AAC | --- | 2 | 2 | AY.4.5 | 0.000215 |
ORF1ab/nsp3 | 305 | N305Y | AaC | TaT | 1 | 2 | AY.44 | 0.000006 |
ORF1ab/nsp3 | 305 | N305Y | Aac | Tac | 1 | 2 | AY.44 | 0.000006 |
ORF1ab/nsp3 | 305 | N305N | aaC | aaT | 2 | 2 | AY.5.4 | 0.000553 |
ORF1ab/nsp3 | 305 | N305N | aaC | aaT | 2 | 2 | AY.62 | 0.000871 |
ORF1ab/nsp3 | 305 | N305N | aaC | aaT | 2 | 2 | AY.67 | 0.000929 |
ORF1ab/nsp3 | 305 | N305N | aaC | aaT | 2 | 2 | AY.75 | 0.000112 |
ORF1ab/nsp3 | 305 | N305N | aaC | aaT | 2 | 2 | AY.96 | 0.004149 |
ORF1ab/nsp3 | 305 | N305N | aaC | aaT | 2 | 2 | AY.99.2 | 0.000184 |
ORF1ab/nsp3 | 305 | N305S | aAc | aGc | 2 | 2 | B.1 | 0.000018 |
ORF1ab/nsp3 | 305 | N305Y | Aac | Tac | 2 | 2 | B.1 | 0.000018 |
ORF1ab/nsp3 | 305 | N305X | AaC | TaA | 2 | 2 | B.1 | 0.000018 |
ORF1ab/nsp3 | 305 | N305S | aAc | aGc | 2 | 2 | B.1.1 | 0.000036 |
ORF1ab/nsp3 | 305 | N305K | aaC | aaA | 2 | 2 | B.1.1.289 | 0.004167 |
ORF1ab/nsp3 | 305 | N305N | aaC | aaT | 2 | 2 | B.1.1.326 | 0.003521 |
ORF1ab/nsp3 | 305 | N305N | aaC | aaT | 2 | 2 | B.1.1.440 | 0.023529 |
ORF1ab/nsp3 | 305 | N305N | aaC | aaT | 2 | 2 | B.1.1.519 | 0.000079 |
ORF1ab/nsp3 | 305 | N305N | aaC | aaT | 2 | 2 | B.1.160 | 0.000062 |
ORF1ab/nsp3 | 305 | N305D | Aac | Gac | 2 | 2 | B.1.177 | 0.000026 |
ORF1ab/nsp3 | 305 | N305K | aaC | aaA | 2 | 2 | B.1.177 | 0.000026 |
ORF1ab/nsp3 | 305 | N305S | aAc | aGc | 2 | 2 | B.1.2 | 0.000018 |
ORF1ab/nsp3 | 305 | N305K | aaC | aaA | 2 | 2 | B.1.258 | 0.000133 |
ORF1ab/nsp3 | 305 | N305N | aaC | aaT | 2 | 2 | B.1.258 | 0.000133 |
ORF1ab/nsp3 | 305 | N305K | aaC | aaA | 2 | 2 | B.1.279 | 0.001027 |
ORF1ab/nsp3 | 305 | N305N | aaC | aaT | 2 | 2 | B.1.36.29 | 0.001035 |
ORF1ab/nsp3 | 305 | N305N | aaC | aaT | 2 | 2 | B.1.36.35 | 0.005208 |
ORF1ab/nsp3 | 305 | N305N | aaC | aaT | 2 | 2 | B.1.389 | 0.002004 |
ORF1ab/nsp3 | 305 | N305K | aaC | aaA | 2 | 2 | B.1.526 | 0.000047 |
ORF1ab/nsp3 | 305 | N305D | Aac | Gac | 2 | 2 | B.40 | 0.000729 |
ORF1ab/nsp3 | 305 | N305N | aaC | aaT | 2 | 2 | C.36 | 0.001821 |
ORF1ab/nsp3 | 305 | N305S | aAc | aGc | 2 | 2 | C.37 | 0.000232 |
ORF1ab/nsp3 | 305 | N305N | aaC | aaT | 2 | 2 | L.3 | 0.007092 |
ORF1ab/nsp3 | 305 | N305del | AAC | --- | 2 | 2 | N.6 | 0.014184 |
ORF1ab/nsp3 | 305 | N305N | aaC | aaT | 1 | 1 | 0.055556 | |
ORF1ab/nsp3 | 305 | N305S | aAc | aGc | 1 | 1 | A.2.2 | 0.001689 |
ORF1ab/nsp3 | 305 | N305G | AAc | GGc | 1 | 1 | All | 0 |
ORF1ab/nsp3 | 305 | N305F | AAc | TTc | 1 | 1 | All | 0 |
ORF1ab/nsp3 | 305 | N305Q | AaC | CaA | 1 | 1 | All | 0 |
ORF1ab/nsp3 | 305 | N305N | aaC | aaT | 1 | 1 | AU.2 | 0.002421 |
ORF1ab/nsp3 | 305 | N305K | aaC | aaA | 1 | 1 | AY.1 | 0.000396 |
ORF1ab/nsp3 | 305 | N305N | aaC | aaT | 1 | 1 | AY.100 | 0.000046 |
ORF1ab/nsp3 | 305 | N305K | aaC | aaA | 1 | 1 | AY.100 | 0.000046 |
ORF1ab/nsp3 | 305 | N305D | Aac | Gac | 1 | 1 | AY.108 | 0.001103 |
ORF1ab/nsp3 | 305 | N305N | aaC | aaT | 1 | 1 | AY.108 | 0.001103 |
ORF1ab/nsp3 | 305 | N305N | aaC | aaT | 1 | 1 | AY.116.1 | 0.000311 |
ORF1ab/nsp3 | 305 | N305N | aaC | aaT | 1 | 1 | AY.117 | 0.000085 |
ORF1ab/nsp3 | 305 | N305del | AAC | --- | 1 | 1 | AY.119 | 0.000035 |
ORF1ab/nsp3 | 305 | N305D | Aac | Gac | 1 | 1 | AY.120 | 0.000037 |
ORF1ab/nsp3 | 305 | N305N | aaC | aaT | 1 | 1 | AY.14 | 0.000088 |
ORF1ab/nsp3 | 305 | N305S | aAc | aGc | 1 | 1 | AY.16.1 | 0.00047 |
ORF1ab/nsp3 | 305 | N305K | aaC | aaA | 1 | 1 | AY.20 | 0.000039 |
ORF1ab/nsp3 | 305 | N305del | AAC | --- | 1 | 1 | AY.23 | 0.00007 |
ORF1ab/nsp3 | 305 | N305del | AAC | --- | 1 | 1 | AY.24 | 0.000431 |
ORF1ab/nsp3 | 305 | N305N | aaC | aaT | 1 | 1 | AY.24 | 0.000431 |
ORF1ab/nsp3 | 305 | N305S | aAc | aGc | 1 | 1 | AY.25 | 0.000006 |
ORF1ab/nsp3 | 305 | N305del | AAC | --- | 1 | 1 | AY.26 | 0.000028 |
ORF1ab/nsp3 | 305 | N305S | aAc | aGc | 1 | 1 | AY.26 | 0.000028 |
ORF1ab/nsp3 | 305 | N305K | aaC | aaA | 1 | 1 | AY.3 | 0.00001 |
ORF1ab/nsp3 | 305 | N305N | aaC | aaT | 1 | 1 | AY.36 | 0.000148 |
ORF1ab/nsp3 | 305 | N305D | Aac | Gac | 1 | 1 | AY.39 | 0.000025 |
ORF1ab/nsp3 | 305 | N305T | aAc | aCc | 1 | 1 | AY.4 | 0.000002 |
ORF1ab/nsp3 | 305 | N305Y | Aac | Tac | 1 | 1 | AY.4 | 0.000002 |
ORF1ab/nsp3 | 305 | N305N | aaC | aaT | 1 | 1 | AY.4.2 | 0.000022 |
ORF1ab/nsp3 | 305 | N305N | aaC | aaT | 1 | 1 | AY.4.5 | 0.000107 |
ORF1ab/nsp3 | 305 | N305I | aAc | aTc | 1 | 1 | AY.43 | 0.000004 |
ORF1ab/nsp3 | 305 | N305X | AaC | TaA | 1 | 1 | AY.44 | 0.000006 |
ORF1ab/nsp3 | 305 | N305S | aAc | aGc | 1 | 1 | AY.44 | 0.000006 |
ORF1ab/nsp3 | 305 | N305S | aAc | aGc | 1 | 1 | AY.46 | 0.000104 |
ORF1ab/nsp3 | 305 | N305T | aAc | aCc | 1 | 1 | AY.47 | 0.000031 |
ORF1ab/nsp3 | 305 | N305S | aAc | aGc | 1 | 1 | AY.5 | 0.000021 |
ORF1ab/nsp3 | 305 | N305K | aaC | aaA | 1 | 1 | AY.5 | 0.000021 |
ORF1ab/nsp3 | 305 | N305Y | Aac | Tac | 1 | 1 | AY.59 | 0.00053 |
ORF1ab/nsp3 | 305 | N305T | aAc | aCc | 1 | 1 | AY.6 | 0.000041 |
ORF1ab/nsp3 | 305 | N305N | aaC | aaT | 1 | 1 | AY.63 | 0.000387 |
ORF1ab/nsp3 | 305 | N305Y | Aac | Tac | 1 | 1 | AY.64 | 0.000595 |
ORF1ab/nsp3 | 305 | N305N | aaC | aaT | 1 | 1 | AY.65 | 0.000533 |
ORF1ab/nsp3 | 305 | N305del | AAC | --- | 1 | 1 | AY.67 | 0.000464 |
ORF1ab/nsp3 | 305 | N305del1 | AAC | -NN | 1 | 1 | AY.68 | 0.000274 |
ORF1ab/nsp3 | 305 | N305N | aaC | aaT | 1 | 1 | AY.7.2 | 0.000559 |
ORF1ab/nsp3 | 305 | N305N | aaC | aaT | 1 | 1 | AY.71 | 0.000475 |
ORF1ab/nsp3 | 305 | N305S | aAc | aGc | 1 | 1 | AY.75 | 0.000056 |
ORF1ab/nsp3 | 305 | N305D | Aac | Gac | 1 | 1 | AY.80 | 0.001129 |
ORF1ab/nsp3 | 305 | N305N | aaC | aaT | 1 | 1 | AY.82 | 0.001357 |
ORF1ab/nsp3 | 305 | N305del | AAC | --- | 1 | 1 | AY.84 | 0.000437 |
ORF1ab/nsp3 | 305 | N305D | Aac | Gac | 1 | 1 | AY.90 | 0.000684 |
ORF1ab/nsp3 | 305 | N305N | aaC | aaT | 1 | 1 | AY.92 | 0.000287 |
ORF1ab/nsp3 | 305 | N305K | aaC | aaA | 1 | 1 | AY.92 | 0.000287 |
ORF1ab/nsp3 | 305 | N305T | aAc | aCc | 1 | 1 | AY.95 | 0.000761 |
ORF1ab/nsp3 | 305 | N305N | aaC | aaT | 1 | 1 | AY.98 | 0.000079 |
ORF1ab/nsp3 | 305 | N305K | aaC | aaA | 1 | 1 | AY.98.1 | 0.000048 |
ORF1ab/nsp3 | 305 | N305del | AAC | --- | 1 | 1 | AY.99 | 0.001049 |
ORF1ab/nsp3 | 305 | N305S | aAc | aGc | 1 | 1 | B | 0.000128 |
ORF1ab/nsp3 | 305 | N305D | Aac | Gac | 1 | 1 | B.1 | 0.000009 |
ORF1ab/nsp3 | 305 | N305F | AAc | TTc | 1 | 1 | B.1 | 0.000009 |
ORF1ab/nsp3 | 305 | N305H | Aac | Cac | 1 | 1 | B.1 | 0.000009 |
ORF1ab/nsp3 | 305 | N305Q | AaC | CaA | 1 | 1 | B.1 | 0.000009 |
ORF1ab/nsp3 | 305 | N305D | Aac | Gac | 1 | 1 | B.1.1 | 0.000018 |
ORF1ab/nsp3 | 305 | N305S | aAc | aGc | 1 | 1 | B.1.1.10 | 0.001115 |
ORF1ab/nsp3 | 305 | N305N | aaC | aaT | 1 | 1 | B.1.1.101 | 0.01 |
ORF1ab/nsp3 | 305 | N305N | aaC | aaT | 1 | 1 | B.1.1.161 | 0.003534 |
ORF1ab/nsp3 | 305 | N305N | aaC | aaT | 1 | 1 | B.1.1.25 | 0.000569 |
ORF1ab/nsp3 | 305 | N305K | aaC | aaA | 1 | 1 | B.1.1.251 | 0.007937 |
ORF1ab/nsp3 | 305 | N305N | aaC | aaT | 1 | 1 | B.1.1.306 | 0.000438 |
ORF1ab/nsp3 | 305 | N305N | aaC | aaT | 1 | 1 | B.1.1.316 | 0.000925 |
ORF1ab/nsp3 | 305 | N305S | aAc | aGc | 1 | 1 | B.1.1.317 | 0.000412 |
ORF1ab/nsp3 | 305 | N305N | aaC | aaT | 1 | 1 | B.1.1.317 | 0.000412 |
ORF1ab/nsp3 | 305 | N305del | AAC | --- | 1 | 1 | B.1.1.33 | 0.000421 |
ORF1ab/nsp3 | 305 | N305D | Aac | Gac | 1 | 1 | B.1.1.33 | 0.000421 |
ORF1ab/nsp3 | 305 | N305K | aaC | aaA | 1 | 1 | B.1.1.342 | 0.0625 |
ORF1ab/nsp3 | 305 | N305del | AAC | --- | 1 | 1 | B.1.1.348 | 0.000796 |
ORF1ab/nsp3 | 305 | N305H | Aac | Cac | 1 | 1 | B.1.1.372 | 0.000689 |
ORF1ab/nsp3 | 305 | N305N | aaC | aaT | 1 | 1 | B.1.1.372 | 0.000689 |
ORF1ab/nsp3 | 305 | N305N | aaC | aaT | 1 | 1 | B.1.1.39 | 0.00051 |
ORF1ab/nsp3 | 305 | N305I | aAc | aTc | 1 | 1 | B.1.1.409 | 0.002833 |
ORF1ab/nsp3 | 305 | N305N | aaC | aaT | 1 | 1 | B.1.1.412 | 0.007634 |
ORF1ab/nsp3 | 305 | N305N | aaC | aaT | 1 | 1 | B.1.1.434 | 0.000349 |
ORF1ab/nsp3 | 305 | N305N | aaC | aaT | 1 | 1 | B.1.1.448 | 0.002033 |
ORF1ab/nsp3 | 305 | N305D | Aac | Gac | 1 | 1 | B.1.1.47 | 0.005348 |
ORF1ab/nsp3 | 305 | N305I | aAc | aTc | 1 | 1 | B.1.1.519 | 0.00004 |
ORF1ab/nsp3 | 305 | N305G | AAc | GGc | 1 | 1 | B.1.1.7 | 0.000001 |
ORF1ab/nsp3 | 305 | N305Y | Aac | Tac | 1 | 1 | B.1.104 | 0.00369 |
ORF1ab/nsp3 | 305 | N305S | aAc | aGc | 1 | 1 | B.1.110 | 0.004525 |
ORF1ab/nsp3 | 305 | N305N | aaC | aaT | 1 | 1 | B.1.146 | 0.004237 |
ORF1ab/nsp3 | 305 | N305D | Aac | Gac | 1 | 1 | B.1.160 | 0.000031 |
ORF1ab/nsp3 | 305 | N305del | AAC | --- | 1 | 1 | B.1.177 | 0.000013 |
ORF1ab/nsp3 | 305 | N305Y | Aac | Tac | 1 | 1 | B.1.177 | 0.000013 |
ORF1ab/nsp3 | 305 | N305N | aaC | aaT | 1 | 1 | B.1.177.17 | 0.000821 |
ORF1ab/nsp3 | 305 | N305D | Aac | Gac | 1 | 1 | B.1.177.21 | 0.000076 |
ORF1ab/nsp3 | 305 | N305K | aaC | aaA | 1 | 1 | B.1.177.51 | 0.004566 |
ORF1ab/nsp3 | 305 | N305K | aaC | aaA | 1 | 1 | B.1.177.60 | 0.000218 |
ORF1ab/nsp3 | 305 | N305del | AAC | --- | 1 | 1 | B.1.177.73 | 0.000566 |
ORF1ab/nsp3 | 305 | N305N | aaC | aaT | 1 | 1 | B.1.177.75 | 0.001041 |
ORF1ab/nsp3 | 305 | N305K | aaC | aaA | 1 | 1 | B.1.187 | 0.033333 |
ORF1ab/nsp3 | 305 | N305del | AAC | --- | 1 | 1 | B.1.2 | 0.000009 |
ORF1ab/nsp3 | 305 | N305del | AAC | --- | 1 | 1 | B.1.218 | 0.005155 |
ORF1ab/nsp3 | 305 | N305N | aaC | aaT | 1 | 1 | B.1.221 | 0.000071 |
ORF1ab/nsp3 | 305 | N305S | aAc | aGc | 1 | 1 | B.1.223 | 0.002778 |
ORF1ab/nsp3 | 305 | N305N | aaC | aaT | 1 | 1 | B.1.241 | 0.000812 |
ORF1ab/nsp3 | 305 | N305del | AAC | --- | 1 | 1 | B.1.243 | 0.00007 |
ORF1ab/nsp3 | 305 | N305N | aaC | aaT | 1 | 1 | B.1.258.16 | 0.001637 |
ORF1ab/nsp3 | 305 | N305N | aaC | aaT | 1 | 1 | B.1.311 | 0.000275 |
ORF1ab/nsp3 | 305 | N305N | aaC | aaT | 1 | 1 | B.1.338 | 0.008621 |
ORF1ab/nsp3 | 305 | N305D | Aac | Gac | 1 | 1 | B.1.351 | 0.00003 |
ORF1ab/nsp3 | 305 | N305del | AAC | --- | 1 | 1 | B.1.36 | 0.000146 |
ORF1ab/nsp3 | 305 | N305K | aaC | aaA | 1 | 1 | B.1.36.29 | 0.000517 |
ORF1ab/nsp3 | 305 | N305K | aaC | aaA | 1 | 1 | B.1.36.8 | 0.001 |
ORF1ab/nsp3 | 305 | N305N | aaC | aaT | 1 | 1 | B.1.396 | 0.000706 |
ORF1ab/nsp3 | 305 | N305K | aaC | aaA | 1 | 1 | B.1.406 | 0.006061 |
ORF1ab/nsp3 | 305 | N305del | AAC | --- | 1 | 1 | B.1.416 | 0.001269 |
ORF1ab/nsp3 | 305 | N305D | Aac | Gac | 1 | 1 | B.1.429 | 0.000024 |
ORF1ab/nsp3 | 305 | N305del | AAC | --- | 1 | 1 | B.1.429 | 0.000024 |
ORF1ab/nsp3 | 305 | N305N | aaC | aaT | 1 | 1 | B.1.439 | 0.005917 |
ORF1ab/nsp3 | 305 | N305N | aaC | aaT | 1 | 1 | B.1.453 | 0.003236 |
ORF1ab/nsp3 | 305 | N305N | aaC | aaT | 1 | 1 | B.1.466.2 | 0.000391 |
ORF1ab/nsp3 | 305 | N305K | aaC | aaA | 1 | 1 | B.1.525 | 0.000113 |
ORF1ab/nsp3 | 305 | N305D | Aac | Gac | 1 | 1 | B.1.525 | 0.000113 |
ORF1ab/nsp3 | 305 | N305S | aAc | aGc | 1 | 1 | B.1.525 | 0.000113 |
ORF1ab/nsp3 | 305 | N305N | aaC | aaT | 1 | 1 | B.1.566 | 0.019231 |
ORF1ab/nsp3 | 305 | N305S | aAc | aGc | 1 | 1 | B.1.568 | 0.001111 |
ORF1ab/nsp3 | 305 | N305N | aaC | aaT | 1 | 1 | B.1.575 | 0.000303 |
ORF1ab/nsp3 | 305 | N305D | Aac | Gac | 1 | 1 | B.1.582 | 0.000491 |
ORF1ab/nsp3 | 305 | N305N | aaC | aaT | 1 | 1 | B.1.595 | 0.000261 |
ORF1ab/nsp3 | 305 | N305del | AAC | --- | 1 | 1 | B.1.596 | 0.000087 |
ORF1ab/nsp3 | 305 | N305N | aaC | aaT | 1 | 1 | B.1.617.1 | 0.000129 |
ORF1ab/nsp3 | 305 | N305Y | AaC | TaT | 1 | 1 | B.1.617.2 | 0.000004 |
ORF1ab/nsp3 | 305 | N305del1 | AAC | -GT | 1 | 1 | B.1.617.2 | 0.000004 |
ORF1ab/nsp3 | 305 | N305I | aAc | aTc | 1 | 1 | B.1.617.2 | 0.000004 |
ORF1ab/nsp3 | 305 | N305T | aAc | aCc | 1 | 1 | B.1.617.2 | 0.000004 |
ORF1ab/nsp3 | 305 | N305N | aaC | aaT | 1 | 1 | B.1.621 | 0.000089 |
ORF1ab/nsp3 | 305 | N305del | AAC | --- | 1 | 1 | B.1.627 | 0.00202 |
ORF1ab/nsp3 | 305 | N305I | aAc | aTc | 1 | 1 | B.1.67 | 0.043478 |
ORF1ab/nsp3 | 305 | N305K | aaC | aaA | 1 | 1 | B.3.1 | 0.001658 |
ORF1ab/nsp3 | 305 | N305K | aaC | aaA | 1 | 1 | B.4.1 | 0.018868 |
ORF1ab/nsp3 | 305 | N305N | aaC | aaT | 1 | 1 | C.30 | 0.001727 |
ORF1ab/nsp3 | 305 | N305N | aaC | aaT | 1 | 1 | C.35 | 0.000774 |
ORF1ab/nsp3 | 305 | N305D | Aac | Gac | 1 | 1 | C.36 | 0.000911 |
ORF1ab/nsp3 | 305 | N305K | aaC | aaA | 1 | 1 | C.37 | 0.000116 |
ORF1ab/nsp3 | 305 | N305N | aaC | aaT | 1 | 1 | C.39 | 0.018868 |
ORF1ab/nsp3 | 305 | N305del | AAC | --- | 1 | 1 | P.1.1 | 0.000318 |
ORF1ab/nsp3 | 305 | N305del | AAC | --- | 1 | 1 | P.1.10 | 0.000269 |
ORF1ab/nsp3 | 305 | N305N | aaC | aaT | 1 | 1 | P.1.12 | 0.000484 |
ORF1ab/nsp3 | 305 | N305del | AAC | --- | 1 | 1 | P.1.13 | 0.000898 |
ORF1ab/nsp3 | 305 | N305N | aaC | aaT | 1 | 1 | P.1.14 | 0.000048 |
ORF1ab/nsp3 | 305 | N305del | AAC | --- | 1 | 1 | P.1.2 | 0.001156 |
ORF1ab/nsp3 | 305 | N305N | aaC | aaT | 1 | 1 | Q.1 | 0.000126 |
ORF1ab/nsp3 | 305 | N305N | aaC | aaT | 1 | 1 | Q.8 | 0.000165 |
CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk
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