CoV-GLUEGenomeCountriesLineagesMutationsInsertionsDeletionsUpdated:

CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF1ab/nsp3 : CodonNum = 300 & Codon = gtT

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF1ab/nsp3300V300VV1118VsyngtCgtT969688360.9113043617-3619

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF1ab/nsp3300V300VgtCgtT88369696All0.00169
ORF1ab/nsp3300V300VgtCgtT34203446B.1.1.70.003062
ORF1ab/nsp3300V300VgtCgtT16181658AY.40.002518
ORF1ab/nsp3300V300VgtCgtT7609B.1.4270.000353
ORF1ab/nsp3300V300VgtCgtT335336B.1.617.20.001261
ORF1ab/nsp3300V300VgtCgtT252254AY.430.001116
ORF1ab/nsp3300V300VgtCgtT153154AY.390.003781
ORF1ab/nsp3300V300VgtCgtT154154B.1.20.001356
ORF1ab/nsp3300V300VgtCgtT144144AY.290.002271
ORF1ab/nsp3300V300VgtCgtT134138AY.1030.000832
ORF1ab/nsp3300V300VgtCgtT119124AY.440.000724
ORF1ab/nsp3300V300VgtCgtT112112AY.260.003171
ORF1ab/nsp3300V300VgtCgtT89109P.1.140.004254
ORF1ab/nsp3300V300VgtCgtT105105B.1.1.280.03268
ORF1ab/nsp3300V300VgtCgtT97103B.10.000888
ORF1ab/nsp3300V300VgtCgtT9292AY.1020.002439
ORF1ab/nsp3300V300VgtCgtT8790AY.50.001796
ORF1ab/nsp3300V300VgtCgtT3885B.1.5260.000893
ORF1ab/nsp3300V300VgtCgtT7783B.1.10.001397
ORF1ab/nsp3300V300VgtCgtT8182AY.250.000487
ORF1ab/nsp3300V300VgtCgtT7575B.1.5230.183824
ORF1ab/nsp3300V300VgtCgtT6870P.10.001071
ORF1ab/nsp3300V300VgtCgtT6767R.10.006031
ORF1ab/nsp3300V300VgtCgtT6062AY.30.000597
ORF1ab/nsp3300V300VgtCgtT4759B.1.4290.001106
ORF1ab/nsp3300V300VgtCgtT4747B.1.1.2090.419643
ORF1ab/nsp3300V300VgtCgtT4444AY.1200.001636
ORF1ab/nsp3300V300VgtCgtT3737B.1.5750.011226
ORF1ab/nsp3300V300VgtCgtT3333AY.1180.002067
ORF1ab/nsp3300V300VgtCgtT3232B.1.1770.000421
ORF1ab/nsp3300V300VgtCgtT2232B.1.5960.001917
ORF1ab/nsp3300V300VgtCgtT3131B.1.160.210.632653
ORF1ab/nsp3300V300VgtCgtT2930B.1.3510.000862
ORF1ab/nsp3300V300VgtCgtT2828B.1.2400.006036
ORF1ab/nsp3300V300VgtCgtT2727B.1.3110.007414
ORF1ab/nsp3300V300VgtCgtT2525B.1.1.3180.007544
ORF1ab/nsp3300V300VgtCgtT2424C.370.002786
ORF1ab/nsp3300V300VgtCgtT122AY.120.10.000321
ORF1ab/nsp3300V300VgtCgtT2222AY.240.009483
ORF1ab/nsp3300V300VgtCgtT2222AY.46.40.003619
ORF1ab/nsp3300V300VgtCgtT2222AY.99.20.002027
ORF1ab/nsp3300V300VgtCgtT2222B.1.177.400.113402
ORF1ab/nsp3300V300VgtCgtT2121B.1.360.003064
ORF1ab/nsp3300V300VgtCgtT2121B.1.3670.01664
ORF1ab/nsp3300V300VgtCgtT1819AY.4.50.001935
ORF1ab/nsp3300V300VgtCgtT1919AY.60.000781
ORF1ab/nsp3300V300VgtCgtT1616AY.39.10.000634
ORF1ab/nsp3300V300VgtCgtT1515AY.450.001825
ORF1ab/nsp3300V300VgtCgtT1515B.1.258.170.00156
ORF1ab/nsp3300V300VgtCgtT1414AY.470.000435
ORF1ab/nsp3300V300VgtCgtT1414B.1.1.330.005892
ORF1ab/nsp3300V300VgtCgtT1414B.1.177.600.003058
ORF1ab/nsp3300V300VgtCgtT814B.1.2580.000532
ORF1ab/nsp3300V300VgtCgtT1414B.1.351.30.01227
ORF1ab/nsp3300V300VgtCgtT1414B.1.6370.001023
ORF1ab/nsp3300V300VgtCgtT1414P.1.70.00447
ORF1ab/nsp3300V300VgtCgtT1414W.40.018919
ORF1ab/nsp3300V300VgtCgtT1313AY.1040.025794
ORF1ab/nsp3300V300VgtCgtT1213AY.3.10.001023
ORF1ab/nsp3300V300VgtCgtT1213AY.750.000672
ORF1ab/nsp3300V300VgtCgtT1313B.1.1.3060.005699
ORF1ab/nsp3300V300VgtCgtT1313P.20.002426
ORF1ab/nsp3300V300VgtCgtT1212B.1.1.5190.000477
ORF1ab/nsp3300V300VgtCgtT1212B.1.1.630.00463
ORF1ab/nsp3300V300VgtCgtT1212B.1.1600.000374
ORF1ab/nsp3300V300VgtCgtT311AY.540.000286
ORF1ab/nsp3300V300VgtCgtT1111B.1.5670.036667
ORF1ab/nsp3300V300VgtCgtT1010AY.1160.002868
ORF1ab/nsp3300V300VgtCgtT1010AY.1170.000845
ORF1ab/nsp3300V300VgtCgtT910AY.4.20.000195
ORF1ab/nsp3300V300VgtCgtT1010B.1.6210.000885
ORF1ab/nsp3300V300VgtCgtT59AY.420.000201
ORF1ab/nsp3300V300VgtCgtT89B.1.1.2220.001632
ORF1ab/nsp3300V300VgtCgtT99B.1.4000.003861
ORF1ab/nsp3300V300VgtCgtT99B.1.4060.054545
ORF1ab/nsp3300V300VgtCgtT39B.1.5250.000339
ORF1ab/nsp3300V300VgtCgtT99P.1.150.002091
ORF1ab/nsp3300V300VgtCgtT88AY.1190.000282
ORF1ab/nsp3300V300VgtCgtT88AY.350.001864
ORF1ab/nsp3300V300VgtCgtT88AY.46.60.000578
ORF1ab/nsp3300V300VgtCgtT88AY.790.009685
ORF1ab/nsp3300V300VgtCgtT88AY.9.20.000294
ORF1ab/nsp3300V300VgtCgtT88B.1.1.700.002729
ORF1ab/nsp3300V300VgtCgtT88Q.10.001011
ORF1ab/nsp3300V300VgtCgtT88Q.30.00116
ORF1ab/nsp3300V300VgtCgtT77AY.160.002658
ORF1ab/nsp3300V300VgtCgtT77AY.480.003256
ORF1ab/nsp3300V300VgtCgtT77AY.680.001916
ORF1ab/nsp3300V300VgtCgtT77B.1.1.390.003568
ORF1ab/nsp3300V300VgtCgtT77B.1.160.150.034653
ORF1ab/nsp3300V300VgtCgtT77B.1.36.80.007
ORF1ab/nsp3300V300VgtCgtT77B.1.617.10.000903
ORF1ab/nsp3300V300VgtCgtT66AY.330.000401
ORF1ab/nsp3300V300VgtCgtT66AY.4.2.10.000894
ORF1ab/nsp3300V300VgtCgtT66AY.46.20.003812
ORF1ab/nsp3300V300VgtCgtT66AY.610.000629
ORF1ab/nsp3300V300VgtCgtT66AY.640.003571
ORF1ab/nsp3300V300VgtCgtT66B.1.177.860.001101
ORF1ab/nsp3300V300VgtCgtT66B.1.466.20.002347
ORF1ab/nsp3300V300VgtCgtT56B.1.6280.001762
ORF1ab/nsp3300V300VgtCgtT66C.260.044118
ORF1ab/nsp3300V300VgtCgtT450.222222
ORF1ab/nsp3300V300VgtCgtT55AY.1210.000677
ORF1ab/nsp3300V300VgtCgtT55AY.300.001979
ORF1ab/nsp3300V300VgtCgtT55AY.460.00052
ORF1ab/nsp3300V300VgtCgtT55AY.7.10.000564
ORF1ab/nsp3300V300VgtCgtT55AY.980.000395
ORF1ab/nsp3300V300VgtCgtT55B.1.2340.00066
ORF1ab/nsp3300V300VgtCgtT55B.1.2430.000348
ORF1ab/nsp3300V300VgtCgtT55D.20.000375
ORF1ab/nsp3300V300VgtCgtT45P.1.10.001271
ORF1ab/nsp3300V300VgtCgtT44AB.10.032787
ORF1ab/nsp3300V300VgtCgtT44AY.200.000155
ORF1ab/nsp3300V300VgtCgtT44AY.230.000279
ORF1ab/nsp3300V300VgtCgtT44AY.4.40.001637
ORF1ab/nsp3300V300VgtCgtT44AY.90.00027
ORF1ab/nsp3300V300VgtCgtT44AY.990.004197
ORF1ab/nsp3300V300VgtCgtT44B.1.1.3690.001785
ORF1ab/nsp3300V300VgtCgtT44B.1.1.4170.010811
ORF1ab/nsp3300V300VgtCgtT44B.1.258.140.003922
ORF1ab/nsp3300V300VgtCgtT44B.1.362.20.018868
ORF1ab/nsp3300V300VgtCgtT44B.1.438.10.000429
ORF1ab/nsp3300V300VgtCgtT44B.1.5050.017544
ORF1ab/nsp3300V300VgtCgtT44B.1.5650.003241
ORF1ab/nsp3300V300VgtCgtT33A.290.015957
ORF1ab/nsp3300V300VgtCgtT33AY.1010.001471
ORF1ab/nsp3300V300VgtCgtT33AY.116.10.000934
ORF1ab/nsp3300V300VgtCgtT33AY.120.000948
ORF1ab/nsp3300V300VgtCgtT33AY.130.000483
ORF1ab/nsp3300V300VgtCgtT33AY.140.000264
ORF1ab/nsp3300V300VgtCgtT33AY.34.10.00153
ORF1ab/nsp3300V300VgtCgtT33AY.4.30.002525
ORF1ab/nsp3300V300VgtCgtT33AY.620.001307
ORF1ab/nsp3300V300VgtCgtT33AY.70.000588
ORF1ab/nsp3300V300VgtCgtT33AY.740.000347
ORF1ab/nsp3300V300VgtCgtT33B.1.1.100.003344
ORF1ab/nsp3300V300VgtCgtT33B.1.1390.002199
ORF1ab/nsp3300V300VgtCgtT33B.1.177.450.001144
ORF1ab/nsp3300V300VgtCgtT33B.1.2060.002447
ORF1ab/nsp3300V300VgtCgtT33B.1.2210.000213
ORF1ab/nsp3300V300VgtCgtT33B.1.2650.003812
ORF1ab/nsp3300V300VgtCgtT33B.1.36.290.001552
ORF1ab/nsp3300V300VgtCgtT33B.1.4360.003086
ORF1ab/nsp3300V300VgtCgtT33B.1.5510.003871
ORF1ab/nsp3300V300VgtCgtT33B.390.006993
ORF1ab/nsp3300V300VgtCgtT22A0.000774
ORF1ab/nsp3300V300VgtCgtT22A.23.10.001408
ORF1ab/nsp3300V300VgtCgtT22AY.1000.000092
ORF1ab/nsp3300V300VgtCgtT22AY.1050.001286
ORF1ab/nsp3300V300VgtCgtT22AY.1080.002205
ORF1ab/nsp3300V300VgtCgtT22AY.1110.000366
ORF1ab/nsp3300V300VgtCgtT22AY.1130.000285
ORF1ab/nsp3300V300VgtCgtT22AY.16.10.00094
ORF1ab/nsp3300V300VgtCgtT22AY.270.000129
ORF1ab/nsp3300V300VgtCgtT22AY.29.10.000441
ORF1ab/nsp3300V300VgtCgtT22AY.320.001065
ORF1ab/nsp3300V300VgtCgtT22AY.340.000194
ORF1ab/nsp3300V300VgtCgtT22AY.360.000296
ORF1ab/nsp3300V300VgtCgtT22AY.9.10.000167
ORF1ab/nsp3300V300VgtCgtT22AY.910.001461
ORF1ab/nsp3300V300VgtCgtT22B0.000256
ORF1ab/nsp3300V300VgtCgtT22B.1.1.10.000653
ORF1ab/nsp3300V300VgtCgtT22B.1.1.1530.002191
ORF1ab/nsp3300V300VgtCgtT22B.1.1.2140.000111
ORF1ab/nsp3300V300VgtCgtT22B.1.1.2160.001781
ORF1ab/nsp3300V300VgtCgtT22B.1.1.2840.000215
ORF1ab/nsp3300V300VgtCgtT22B.1.1.2910.001485
ORF1ab/nsp3300V300VgtCgtT22B.1.1.3160.00185
ORF1ab/nsp3300V300VgtCgtT12B.1.1.3170.000412
ORF1ab/nsp3300V300VgtCgtT22B.1.1.4340.000697
ORF1ab/nsp3300V300VgtCgtT22B.1.177.150.001262
ORF1ab/nsp3300V300VgtCgtT22B.1.177.680.030303
ORF1ab/nsp3300V300VgtCgtT22B.1.177.70.00033
ORF1ab/nsp3300V300VgtCgtT22B.1.177.730.001133
ORF1ab/nsp3300V300VgtCgtT22B.1.177.750.002081
ORF1ab/nsp3300V300VgtCgtT22B.1.221.30.001667
ORF1ab/nsp3300V300VgtCgtT22B.1.2320.001075
ORF1ab/nsp3300V300VgtCgtT22B.1.3690.00057
ORF1ab/nsp3300V300VgtCgtT12B.1.3750.00082
ORF1ab/nsp3300V300VgtCgtT22B.1.4080.00738
ORF1ab/nsp3300V300VgtCgtT22B.1.4110.007407
ORF1ab/nsp3300V300VgtCgtT22B.1.4700.002809
ORF1ab/nsp3300V300VgtCgtT22B.1.5380.016129
ORF1ab/nsp3300V300VgtCgtT22B.1.5770.001375
ORF1ab/nsp3300V300VgtCgtT22B.1.6090.000959
ORF1ab/nsp3300V300VgtCgtT22B.1.6310.006734
ORF1ab/nsp3300V300VgtCgtT22B.400.000729
ORF1ab/nsp3300V300VgtCgtT22C.350.001548
ORF1ab/nsp3300V300VgtCgtT22C.36.30.001134
ORF1ab/nsp3300V300VgtCgtT22N.50.003534
ORF1ab/nsp3300V300VgtCgtT22Q.80.00033
ORF1ab/nsp3300V300VgtCgtT11A.2.20.001689
ORF1ab/nsp3300V300VgtCgtT11A.2.50.000499
ORF1ab/nsp3300V300VgtCgtT11A.2.5.10.004808
ORF1ab/nsp3300V300VgtCgtT11AV.10.005051
ORF1ab/nsp3300V300VgtCgtT11AY.10.000396
ORF1ab/nsp3300V300VgtCgtT11AY.1060.000335
ORF1ab/nsp3300V300VgtCgtT11AY.1140.000231
ORF1ab/nsp3300V300VgtCgtT11AY.1150.005208
ORF1ab/nsp3300V300VgtCgtT11AY.170.008197
ORF1ab/nsp3300V300VgtCgtT11AY.190.00114
ORF1ab/nsp3300V300VgtCgtT11AY.5.20.002463
ORF1ab/nsp3300V300VgtCgtT11AY.510.000909
ORF1ab/nsp3300V300VgtCgtT11AY.530.000288
ORF1ab/nsp3300V300VgtCgtT11AY.550.000917
ORF1ab/nsp3300V300VgtCgtT11AY.560.001605
ORF1ab/nsp3300V300VgtCgtT11AY.580.000907
ORF1ab/nsp3300V300VgtCgtT11AY.650.000533
ORF1ab/nsp3300V300VgtCgtT11AY.690.000187
ORF1ab/nsp3300V300VgtCgtT11AY.840.000437
ORF1ab/nsp3300V300VgtCgtT11AY.860.00083
ORF1ab/nsp3300V300VgtCgtT11AY.950.000761
ORF1ab/nsp3300V300VgtCgtT11AY.98.10.000048
ORF1ab/nsp3300V300VgtCgtT11B.1.1.1250.010204
ORF1ab/nsp3300V300VgtCgtT11B.1.1.1760.000439
ORF1ab/nsp3300V300VgtCgtT11B.1.1.1890.001513
ORF1ab/nsp3300V300VgtCgtT11B.1.1.1980.001468
ORF1ab/nsp3300V300VgtCgtT11B.1.1.2070.001182
ORF1ab/nsp3300V300VgtCgtT11B.1.1.2430.004082
ORF1ab/nsp3300V300VgtCgtT11B.1.1.250.000569
ORF1ab/nsp3300V300VgtCgtT11B.1.1.2940.001266
ORF1ab/nsp3300V300VgtCgtT11B.1.1.2980.000862
ORF1ab/nsp3300V300VgtCgtT11B.1.1.3630.005988
ORF1ab/nsp3300V300VgtCgtT11B.1.1.370.000193
ORF1ab/nsp3300V300VgtCgtT11B.1.1.3980.003226
ORF1ab/nsp3300V300VgtCgtT11B.1.1.4060.006494
ORF1ab/nsp3300V300VgtCgtT11B.1.1.4160.000905
ORF1ab/nsp3300V300VgtCgtT11B.1.1.4530.008475
ORF1ab/nsp3300V300VgtCgtT11B.1.1.4870.005587
ORF1ab/nsp3300V300VgtCgtT11B.1.1.5210.005348
ORF1ab/nsp3300V300VgtCgtT11B.1.1.590.006494
ORF1ab/nsp3300V300VgtCgtT11B.1.1460.004237
ORF1ab/nsp3300V300VgtCgtT11B.1.177.200.001517
ORF1ab/nsp3300V300VgtCgtT11B.1.177.210.000076
ORF1ab/nsp3300V300VgtCgtT11B.1.177.320.00135
ORF1ab/nsp3300V300VgtCgtT11B.1.177.430.001477
ORF1ab/nsp3300V300VgtCgtT11B.1.177.440.000519
ORF1ab/nsp3300V300VgtCgtT11B.1.177.520.001757
ORF1ab/nsp3300V300VgtCgtT11B.1.177.770.000726
ORF1ab/nsp3300V300VgtCgtT11B.1.177.800.001912
ORF1ab/nsp3300V300VgtCgtT11B.1.177.870.000728
ORF1ab/nsp3300V300VgtCgtT11B.1.2180.005155
ORF1ab/nsp3300V300VgtCgtT11B.1.22.10.03125
ORF1ab/nsp3300V300VgtCgtT11B.1.230.006061
ORF1ab/nsp3300V300VgtCgtT11B.1.2390.001221
ORF1ab/nsp3300V300VgtCgtT11B.1.2600.003344
ORF1ab/nsp3300V300VgtCgtT11B.1.3360.002439
ORF1ab/nsp3300V300VgtCgtT11B.1.3590.022727
ORF1ab/nsp3300V300VgtCgtT11B.1.36.160.001425
ORF1ab/nsp3300V300VgtCgtT11B.1.36.170.000494
ORF1ab/nsp3300V300VgtCgtT11B.1.36.190.009259
ORF1ab/nsp3300V300VgtCgtT11B.1.36.220.001208
ORF1ab/nsp3300V300VgtCgtT11B.1.36.360.000602
ORF1ab/nsp3300V300VgtCgtT11B.1.36.70.004
ORF1ab/nsp3300V300VgtCgtT11B.1.36.90.003215
ORF1ab/nsp3300V300VgtCgtT11B.1.3770.004566
ORF1ab/nsp3300V300VgtCgtT11B.1.3960.000706
ORF1ab/nsp3300V300VgtCgtT11B.1.4040.001302
ORF1ab/nsp3300V300VgtCgtT11B.1.4160.001269
ORF1ab/nsp3300V300VgtCgtT11B.1.4530.003236
ORF1ab/nsp3300V300VgtCgtT11B.1.4590.004082
ORF1ab/nsp3300V300VgtCgtT11B.1.4680.005714
ORF1ab/nsp3300V300VgtCgtT11B.1.4990.00105
ORF1ab/nsp3300V300VgtCgtT11B.1.5010.007353
ORF1ab/nsp3300V300VgtCgtT11B.1.5090.000866
ORF1ab/nsp3300V300VgtCgtT11B.1.5170.000427
ORF1ab/nsp3300V300VgtCgtT11B.1.5210.004975
ORF1ab/nsp3300V300VgtCgtT11B.1.5240.001406
ORF1ab/nsp3300V300VgtCgtT11B.1.5330.009615
ORF1ab/nsp3300V300VgtCgtT11B.1.5610.000397
ORF1ab/nsp3300V300VgtCgtT11B.1.5760.000907
ORF1ab/nsp3300V300VgtCgtT11B.1.5800.004065
ORF1ab/nsp3300V300VgtCgtT11B.1.5900.004545
ORF1ab/nsp3300V300VgtCgtT11B.1.5950.000261
ORF1ab/nsp3300V300VgtCgtT11B.1.5970.00463
ORF1ab/nsp3300V300VgtCgtT11B.1.617.30.002985
ORF1ab/nsp3300V300VgtCgtT11B.1.780.008547
ORF1ab/nsp3300V300VgtCgtT11B.1.88.10.004808
ORF1ab/nsp3300V300VgtCgtT11C.160.00106
ORF1ab/nsp3300V300VgtCgtT11C.360.000911
ORF1ab/nsp3300V300VgtCgtT11N.10.016949
ORF1ab/nsp3300V300VgtCgtT11P.1.160.000374
ORF1ab/nsp3300V300VgtCgtT11W.20.004831

CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk

CoV-GLUE uses sequence data from GISAID. GISAID data provided via this web application is subject to GISAID's Terms and Conditions.