CoV-GLUE | Mutations | Mutation
Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):
ORF | CodonNum | Mut | ORF1abMut | MutType | RefCodon | MutCodon | AACount | CodonCount | CodonProp | Genome Position |
ORF1ab/nsp3 | 295 | H295Y | H1113Y | nonsyn | Cac | Tac | 22683 | 22681 | 0.999912 | 3602-3604 |
ORF1ab/nsp3 | 295 | H295Y | H1113Y | nonsyn | CaC | TaT | 22683 | 2 | 0.0000881718 | 3602-3604 |
ORF1ab/nsp3 | 295 | H295H | H1113H | syn | caC | caT | 1607 | 1607 | 1 | 3602-3604 |
ORF1ab/nsp3 | 295 | H295R | H1113R | nonsyn | cAc | cGc | 206 | 206 | 1 | 3602-3604 |
ORF1ab/nsp3 | 295 | H295del | H1113del | del | CAC | --- | 114 | 114 | 1 | 3602-3604 |
ORF1ab/nsp3 | 295 | H295Q | H1113Q | nonsyn | caC | caA | 111 | 105 | 0.945946 | 3602-3604 |
ORF1ab/nsp3 | 295 | H295Q | H1113Q | nonsyn | caC | caG | 111 | 6 | 0.0540541 | 3602-3604 |
ORF1ab/nsp3 | 295 | H295N | H1113N | nonsyn | Cac | Aac | 38 | 38 | 1 | 3602-3604 |
ORF1ab/nsp3 | 295 | H295D | H1113D | nonsyn | Cac | Gac | 18 | 18 | 1 | 3602-3604 |
ORF1ab/nsp3 | 295 | H295L | H1113L | nonsyn | cAc | cTc | 4 | 4 | 1 | 3602-3604 |
ORF1ab/nsp3 | 295 | H295P | H1113P | nonsyn | cAC | cCT | 3 | 2 | 0.666667 | 3602-3604 |
ORF1ab/nsp3 | 295 | H295P | H1113P | nonsyn | cAc | cCc | 3 | 1 | 0.333333 | 3602-3604 |
ORF1ab/nsp3 | 295 | H295I | H1113I | nonsyn | CAC | ATT | 2 | 1 | 0.5 | 3602-3604 |
ORF1ab/nsp3 | 295 | H295del2 | H1113del2 | del | CAC | --N | 2 | 1 | 0.5 | 3602-3604 |
ORF1ab/nsp3 | 295 | H295I | H1113I | nonsyn | CAc | ATc | 2 | 1 | 0.5 | 3602-3604 |
ORF1ab/nsp3 | 295 | H295del2 | H1113del2 | del | CAc | --c | 2 | 1 | 0.5 | 3602-3604 |
ORF1ab/nsp3 | 295 | H295C | H1113C | nonsyn | CAc | TGc | 1 | 1 | 1 | 3602-3604 |
ORF1ab/nsp3 | 295 | H295T | H1113T | nonsyn | CAC | ACA | 1 | 1 | 1 | 3602-3604 |
ORF1ab/nsp3 | 295 | H295E | H1113E | nonsyn | CaC | GaG | 1 | 1 | 1 | 3602-3604 |
ORF1ab/nsp3 | 295 | H295del1 | H1113del1 | del | caC | ca- | 1 | 1 | 1 | 3602-3604 |
Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):
ORF | CodonNum | Mut | RefCodon | MutCodon | CodonCount | AACount | Lineage | LineageCodonProp |
ORF1ab/nsp3 | 295 | H295Y | Cac | Tac | 22681 | 22683 | All | 0.004338 |
ORF1ab/nsp3 | 295 | H295Y | CaC | TaT | 2 | 22683 | All | 0 |
ORF1ab/nsp3 | 295 | H295Y | Cac | Tac | 12958 | 12959 | B.1.221 | 0.920443 |
ORF1ab/nsp3 | 295 | H295Y | CaC | TaT | 1 | 12959 | B.1.221 | 0.000071 |
ORF1ab/nsp3 | 295 | H295Y | Cac | Tac | 2915 | 2915 | B.1.1.7 | 0.00261 |
ORF1ab/nsp3 | 295 | H295H | caC | caT | 1607 | 1607 | All | 0.000307 |
ORF1ab/nsp3 | 295 | H295Y | Cac | Tac | 1197 | 1197 | B.1.221.3 | 0.9975 |
ORF1ab/nsp3 | 295 | H295Y | Cac | Tac | 685 | 685 | AY.103 | 0.004253 |
ORF1ab/nsp3 | 295 | H295Y | Cac | Tac | 378 | 378 | B.1.497 | 0.11898 |
ORF1ab/nsp3 | 295 | H295H | caC | caT | 363 | 363 | B.1.1.7 | 0.000325 |
ORF1ab/nsp3 | 295 | H295Y | Cac | Tac | 346 | 347 | AY.4 | 0.000539 |
ORF1ab/nsp3 | 295 | H295Y | CaC | TaT | 1 | 347 | AY.4 | 0.000002 |
ORF1ab/nsp3 | 295 | H295Y | Cac | Tac | 344 | 344 | B.1.221.1 | 1 |
ORF1ab/nsp3 | 295 | H295Y | Cac | Tac | 270 | 270 | B.1.617.2 | 0.001017 |
ORF1ab/nsp3 | 295 | H295H | caC | caT | 253 | 253 | AY.4 | 0.000394 |
ORF1ab/nsp3 | 295 | H295Y | Cac | Tac | 247 | 247 | B.1.221.2 | 0.991968 |
ORF1ab/nsp3 | 295 | H295Y | Cac | Tac | 238 | 238 | B.1.221.4 | 0.991667 |
ORF1ab/nsp3 | 295 | H295Y | Cac | Tac | 213 | 213 | AY.43 | 0.000944 |
ORF1ab/nsp3 | 295 | H295R | cAc | cGc | 206 | 206 | All | 0.000039 |
ORF1ab/nsp3 | 295 | H295Y | Cac | Tac | 174 | 174 | B.1.1 | 0.003157 |
ORF1ab/nsp3 | 295 | H295H | caC | caT | 170 | 170 | B.1.1.272 | 0.885417 |
ORF1ab/nsp3 | 295 | H295Y | Cac | Tac | 164 | 164 | B.1 | 0.001502 |
ORF1ab/nsp3 | 295 | H295Y | Cac | Tac | 134 | 134 | B.1.2 | 0.00118 |
ORF1ab/nsp3 | 295 | H295Y | Cac | Tac | 118 | 118 | B.1.258 | 0.007853 |
ORF1ab/nsp3 | 295 | H295del | CAC | --- | 114 | 114 | All | 0.000022 |
ORF1ab/nsp3 | 295 | H295Y | Cac | Tac | 112 | 112 | B.1.177 | 0.001475 |
ORF1ab/nsp3 | 295 | H295Y | Cac | Tac | 112 | 112 | P.1 | 0.001764 |
ORF1ab/nsp3 | 295 | H295Q | caC | caA | 105 | 111 | All | 0.00002 |
ORF1ab/nsp3 | 295 | H295Q | caC | caG | 6 | 111 | All | 0.000001 |
ORF1ab/nsp3 | 295 | H295Y | Cac | Tac | 100 | 100 | AY.3 | 0.000995 |
ORF1ab/nsp3 | 295 | H295H | caC | caT | 91 | 91 | B.1.177.7 | 0.015002 |
ORF1ab/nsp3 | 295 | H295Y | Cac | Tac | 89 | 89 | AP.1 | 0.133634 |
ORF1ab/nsp3 | 295 | H295H | caC | caT | 82 | 82 | AY.103 | 0.000509 |
ORF1ab/nsp3 | 295 | H295Y | Cac | Tac | 75 | 75 | AY.44 | 0.000457 |
ORF1ab/nsp3 | 295 | H295Y | Cac | Tac | 72 | 72 | B.1.452 | 0.986301 |
ORF1ab/nsp3 | 295 | H295Y | Cac | Tac | 68 | 68 | B.1.526 | 0.001598 |
ORF1ab/nsp3 | 295 | H295Y | Cac | Tac | 63 | 63 | B.1.569 | 0.913043 |
ORF1ab/nsp3 | 295 | H295H | caC | caT | 62 | 62 | B.1.2 | 0.000546 |
ORF1ab/nsp3 | 295 | H295Y | Cac | Tac | 58 | 58 | C.36.1 | 0.240664 |
ORF1ab/nsp3 | 295 | H295R | cAc | cGc | 57 | 57 | B.1.1.7 | 0.000051 |
ORF1ab/nsp3 | 295 | H295H | caC | caT | 57 | 57 | B.1.617.2 | 0.000215 |
ORF1ab/nsp3 | 295 | H295Y | Cac | Tac | 55 | 55 | AY.4.2 | 0.001193 |
ORF1ab/nsp3 | 295 | H295Y | Cac | Tac | 55 | 55 | B.1.265 | 0.069886 |
ORF1ab/nsp3 | 295 | H295Y | Cac | Tac | 53 | 53 | AY.119 | 0.001871 |
ORF1ab/nsp3 | 295 | H295Y | Cac | Tac | 52 | 52 | AY.25 | 0.000313 |
ORF1ab/nsp3 | 295 | H295Y | Cac | Tac | 52 | 52 | B.1.429 | 0.001224 |
ORF1ab/nsp3 | 295 | H295Q | caC | caA | 51 | 51 | AY.120 | 0.001896 |
ORF1ab/nsp3 | 295 | H295Y | Cac | Tac | 47 | 47 | AY.102 | 0.001246 |
ORF1ab/nsp3 | 295 | H295H | caC | caT | 44 | 44 | B.1.160 | 0.001372 |
ORF1ab/nsp3 | 295 | H295H | caC | caT | 40 | 40 | B.1 | 0.000366 |
ORF1ab/nsp3 | 295 | H295Y | Cac | Tac | 39 | 39 | B.1.160 | 0.001216 |
ORF1ab/nsp3 | 295 | H295N | Cac | Aac | 38 | 38 | All | 0.000007 |
ORF1ab/nsp3 | 295 | H295H | caC | caT | 37 | 37 | AY.25 | 0.000223 |
ORF1ab/nsp3 | 295 | H295Y | Cac | Tac | 37 | 37 | R.1 | 0.00333 |
ORF1ab/nsp3 | 295 | H295H | caC | caT | 36 | 36 | B.1.1.519 | 0.00143 |
ORF1ab/nsp3 | 295 | H295Y | Cac | Tac | 34 | 34 | AY.113 | 0.004841 |
ORF1ab/nsp3 | 295 | H295Y | Cac | Tac | 34 | 34 | B.1.1.162 | 1 |
ORF1ab/nsp3 | 295 | H295Y | Cac | Tac | 34 | 34 | B.1.177.21 | 0.0026 |
ORF1ab/nsp3 | 295 | H295Y | Cac | Tac | 33 | 33 | AY.39 | 0.000815 |
ORF1ab/nsp3 | 295 | H295Y | Cac | Tac | 32 | 32 | B.1.408 | 0.118081 |
ORF1ab/nsp3 | 295 | H295R | cAc | cGc | 32 | 32 | B.1.617.2 | 0.00012 |
ORF1ab/nsp3 | 295 | H295H | caC | caT | 31 | 31 | B.1.526 | 0.000729 |
ORF1ab/nsp3 | 295 | H295Y | Cac | Tac | 30 | 30 | AY.7.2 | 0.016779 |
ORF1ab/nsp3 | 295 | H295R | cAc | cGc | 29 | 29 | B.1.2 | 0.000255 |
ORF1ab/nsp3 | 295 | H295Y | Cac | Tac | 28 | 28 | AY.9 | 0.001893 |
ORF1ab/nsp3 | 295 | H295Y | Cac | Tac | 28 | 28 | B.1.1.519 | 0.001112 |
ORF1ab/nsp3 | 295 | H295Y | Cac | Tac | 28 | 28 | Q.4 | 0.012733 |
ORF1ab/nsp3 | 295 | H295H | caC | caT | 26 | 26 | AY.43 | 0.000115 |
ORF1ab/nsp3 | 295 | H295Y | Cac | Tac | 26 | 26 | AY.74 | 0.003007 |
ORF1ab/nsp3 | 295 | H295Y | Cac | Tac | 26 | 26 | B.1.351 | 0.000773 |
ORF1ab/nsp3 | 295 | H295R | cAc | cGc | 24 | 24 | AY.43 | 0.000106 |
ORF1ab/nsp3 | 295 | H295Y | Cac | Tac | 24 | 24 | P.1.14 | 0.001147 |
ORF1ab/nsp3 | 295 | H295Y | Cac | Tac | 23 | 23 | B.1.160.26 | 0.05569 |
ORF1ab/nsp3 | 295 | H295H | caC | caT | 23 | 23 | B.1.177 | 0.000303 |
ORF1ab/nsp3 | 295 | H295Y | Cac | Tac | 20 | 20 | AY.110 | 0.002254 |
ORF1ab/nsp3 | 295 | H295del | CAC | --- | 20 | 20 | P.1.15 | 0.004647 |
ORF1ab/nsp3 | 295 | H295Y | Cac | Tac | 19 | 19 | AY.46 | 0.001978 |
ORF1ab/nsp3 | 295 | H295H | caC | caT | 19 | 19 | B.1.429 | 0.000447 |
ORF1ab/nsp3 | 295 | H295D | Cac | Gac | 18 | 18 | All | 0.000003 |
ORF1ab/nsp3 | 295 | H295Y | Cac | Tac | 18 | 18 | AY.29 | 0.000284 |
ORF1ab/nsp3 | 295 | H295del | CAC | --- | 18 | 18 | P.1 | 0.000284 |
ORF1ab/nsp3 | 295 | H295Y | Cac | Tac | 17 | 17 | AY.46.5 | 0.003373 |
ORF1ab/nsp3 | 295 | H295Y | Cac | Tac | 17 | 17 | B.1.1.58 | 0.091398 |
ORF1ab/nsp3 | 295 | H295Y | Cac | Tac | 17 | 17 | B.1.177.60 | 0.003713 |
ORF1ab/nsp3 | 295 | H295Y | Cac | Tac | 16 | 16 | B.1.210 | 0.034115 |
ORF1ab/nsp3 | 295 | H295H | caC | caT | 14 | 14 | AY.44 | 0.000085 |
ORF1ab/nsp3 | 295 | H295H | caC | caT | 14 | 14 | B.1.258.17 | 0.001456 |
ORF1ab/nsp3 | 295 | H295Y | Cac | Tac | 14 | 14 | B.1.427 | 0.000707 |
ORF1ab/nsp3 | 295 | H295Y | Cac | Tac | 14 | 14 | B.1.577 | 0.009622 |
ORF1ab/nsp3 | 295 | H295Y | Cac | Tac | 13 | 13 | AY.100 | 0.000598 |
ORF1ab/nsp3 | 295 | H295Y | Cac | Tac | 13 | 13 | AY.20 | 0.000505 |
ORF1ab/nsp3 | 295 | H295Y | Cac | Tac | 13 | 13 | AY.47 | 0.000404 |
ORF1ab/nsp3 | 295 | H295D | Cac | Gac | 13 | 13 | B.1.1.7 | 0.000012 |
ORF1ab/nsp3 | 295 | H295N | Cac | Aac | 13 | 13 | B.1.1.7 | 0.000012 |
ORF1ab/nsp3 | 295 | H295Y | Cac | Tac | 13 | 13 | B.1.240 | 0.002802 |
ORF1ab/nsp3 | 295 | H295H | caC | caT | 13 | 13 | B.1.36.29 | 0.006725 |
ORF1ab/nsp3 | 295 | H295Y | Cac | Tac | 12 | 12 | AY.39.1 | 0.000475 |
ORF1ab/nsp3 | 295 | H295Y | Cac | Tac | 11 | 11 | AY.106 | 0.003684 |
ORF1ab/nsp3 | 295 | H295H | caC | caT | 11 | 11 | B.1.234 | 0.001451 |
ORF1ab/nsp3 | 295 | H295Y | Cac | Tac | 10 | 10 | AY.118 | 0.000626 |
ORF1ab/nsp3 | 295 | H295H | caC | caT | 10 | 10 | AY.39.1 | 0.000396 |
ORF1ab/nsp3 | 295 | H295Y | Cac | Tac | 10 | 10 | AY.42 | 0.000402 |
ORF1ab/nsp3 | 295 | H295H | caC | caT | 10 | 10 | B.1.1 | 0.000181 |
ORF1ab/nsp3 | 295 | H295Y | Cac | Tac | 10 | 10 | B.1.1.406 | 0.064935 |
ORF1ab/nsp3 | 295 | H295del | CAC | --- | 10 | 10 | B.1.1.7 | 0.000009 |
ORF1ab/nsp3 | 295 | H295Y | Cac | Tac | 10 | 10 | B.1.621 | 0.000885 |
ORF1ab/nsp3 | 295 | H295R | cAc | cGc | 10 | 10 | C.36.3 | 0.005672 |
ORF1ab/nsp3 | 295 | H295del | CAC | --- | 10 | 10 | P.1.12 | 0.00484 |
ORF1ab/nsp3 | 295 | H295H | caC | caT | 9 | 9 | AY.3 | 0.00009 |
ORF1ab/nsp3 | 295 | H295Y | Cac | Tac | 9 | 9 | AY.46.4 | 0.001481 |
ORF1ab/nsp3 | 295 | H295Q | caC | caA | 9 | 9 | AY.47 | 0.00028 |
ORF1ab/nsp3 | 295 | H295del | CAC | --- | 9 | 9 | B.1 | 0.000082 |
ORF1ab/nsp3 | 295 | H295Q | caC | caA | 7 | 9 | B.1.1.7 | 0.000006 |
ORF1ab/nsp3 | 295 | H295Q | caC | caG | 2 | 9 | B.1.1.7 | 0.000002 |
ORF1ab/nsp3 | 295 | H295H | caC | caT | 9 | 9 | B.1.351 | 0.000268 |
ORF1ab/nsp3 | 295 | H295H | caC | caT | 9 | 9 | B.1.400 | 0.003861 |
ORF1ab/nsp3 | 295 | H295Y | Cac | Tac | 9 | 9 | C.37 | 0.001045 |
ORF1ab/nsp3 | 295 | H295H | caC | caT | 9 | 9 | P.1.10 | 0.002425 |
ORF1ab/nsp3 | 295 | H295Y | Cac | Tac | 8 | 8 | AY.26 | 0.000226 |
ORF1ab/nsp3 | 295 | H295H | caC | caT | 8 | 8 | AY.4.2 | 0.000174 |
ORF1ab/nsp3 | 295 | H295Y | Cac | Tac | 8 | 8 | AY.6 | 0.000329 |
ORF1ab/nsp3 | 295 | H295Y | Cac | Tac | 8 | 8 | B.1.177.12 | 0.001214 |
ORF1ab/nsp3 | 295 | H295Y | Cac | Tac | 8 | 8 | B.1.177.43 | 0.011817 |
ORF1ab/nsp3 | 295 | H295Y | Cac | Tac | 7 | 7 | AY.117 | 0.000592 |
ORF1ab/nsp3 | 295 | H295H | caC | caT | 7 | 7 | AY.119 | 0.000247 |
ORF1ab/nsp3 | 295 | H295Y | Cac | Tac | 7 | 7 | AY.120 | 0.00026 |
ORF1ab/nsp3 | 295 | H295Y | Cac | Tac | 7 | 7 | AY.23 | 0.000488 |
ORF1ab/nsp3 | 295 | H295Y | Cac | Tac | 7 | 7 | AY.27 | 0.000453 |
ORF1ab/nsp3 | 295 | H295Y | Cac | Tac | 7 | 7 | AY.33 | 0.000467 |
ORF1ab/nsp3 | 295 | H295H | caC | caT | 7 | 7 | AY.4.2.1 | 0.001043 |
ORF1ab/nsp3 | 295 | H295Y | Cac | Tac | 7 | 7 | B.1.1.39 | 0.003568 |
ORF1ab/nsp3 | 295 | H295Y | Cac | Tac | 7 | 7 | B.1.160.32 | 0.030043 |
ORF1ab/nsp3 | 295 | H295Y | Cac | Tac | 7 | 7 | B.1.280 | 0.05 |
ORF1ab/nsp3 | 295 | H295Y | Cac | Tac | 7 | 7 | B.1.36.1 | 0.007982 |
ORF1ab/nsp3 | 295 | H295Y | Cac | Tac | 7 | 7 | D.2 | 0.000525 |
ORF1ab/nsp3 | 295 | H295H | caC | caT | 6 | 6 | AY.12 | 0.001896 |
ORF1ab/nsp3 | 295 | H295Y | Cac | Tac | 6 | 6 | AY.41 | 0.001764 |
ORF1ab/nsp3 | 295 | H295H | caC | caT | 6 | 6 | AY.54 | 0.000572 |
ORF1ab/nsp3 | 295 | H295Y | Cac | Tac | 6 | 6 | AY.7.1 | 0.000676 |
ORF1ab/nsp3 | 295 | H295H | caC | caT | 6 | 6 | AY.74 | 0.000694 |
ORF1ab/nsp3 | 295 | H295Y | Cac | Tac | 6 | 6 | AY.98 | 0.000474 |
ORF1ab/nsp3 | 295 | H295Y | Cac | Tac | 6 | 6 | B.1.1.214 | 0.000333 |
ORF1ab/nsp3 | 295 | H295Y | Cac | Tac | 6 | 6 | B.1.1.448 | 0.012195 |
ORF1ab/nsp3 | 295 | H295Y | Cac | Tac | 6 | 6 | B.1.170 | 0.025862 |
ORF1ab/nsp3 | 295 | H295Y | Cac | Tac | 6 | 6 | B.1.177.51 | 0.027397 |
ORF1ab/nsp3 | 295 | H295Y | Cac | Tac | 6 | 6 | B.1.243 | 0.000418 |
ORF1ab/nsp3 | 295 | H295Y | Cac | Tac | 6 | 6 | C.36 | 0.005464 |
ORF1ab/nsp3 | 295 | H295Y | Cac | Tac | 5 | 5 | AY.14 | 0.00044 |
ORF1ab/nsp3 | 295 | H295Y | Cac | Tac | 5 | 5 | AY.34 | 0.000485 |
ORF1ab/nsp3 | 295 | H295R | cAc | cGc | 5 | 5 | AY.39 | 0.000124 |
ORF1ab/nsp3 | 295 | H295R | cAc | cGc | 5 | 5 | AY.46.6 | 0.000361 |
ORF1ab/nsp3 | 295 | H295Y | Cac | Tac | 5 | 5 | AY.53 | 0.001438 |
ORF1ab/nsp3 | 295 | H295Y | Cac | Tac | 5 | 5 | AY.9.2 | 0.000184 |
ORF1ab/nsp3 | 295 | H295Y | Cac | Tac | 5 | 5 | AY.98.1 | 0.000242 |
ORF1ab/nsp3 | 295 | H295Y | Cac | Tac | 5 | 5 | B.1.234 | 0.00066 |
ORF1ab/nsp3 | 295 | H295Y | Cac | Tac | 5 | 5 | B.1.349 | 0.003574 |
ORF1ab/nsp3 | 295 | H295Y | Cac | Tac | 5 | 5 | B.1.369 | 0.001426 |
ORF1ab/nsp3 | 295 | H295H | caC | caT | 5 | 5 | B.1.427 | 0.000252 |
ORF1ab/nsp3 | 295 | H295Y | Cac | Tac | 5 | 5 | B.1.525 | 0.000566 |
ORF1ab/nsp3 | 295 | H295L | cAc | cTc | 4 | 4 | All | 0.000001 |
ORF1ab/nsp3 | 295 | H295R | cAc | cGc | 4 | 4 | AY.103 | 0.000025 |
ORF1ab/nsp3 | 295 | H295Q | caC | caA | 4 | 4 | AY.121 | 0.000541 |
ORF1ab/nsp3 | 295 | H295N | Cac | Aac | 4 | 4 | AY.25 | 0.000024 |
ORF1ab/nsp3 | 295 | H295H | caC | caT | 4 | 4 | AY.29 | 0.000063 |
ORF1ab/nsp3 | 295 | H295D | Cac | Gac | 4 | 4 | AY.3 | 0.00004 |
ORF1ab/nsp3 | 295 | H295Y | Cac | Tac | 4 | 4 | AY.32 | 0.00213 |
ORF1ab/nsp3 | 295 | H295N | Cac | Aac | 4 | 4 | AY.44 | 0.000024 |
ORF1ab/nsp3 | 295 | H295Y | Cac | Tac | 4 | 4 | AY.45 | 0.000487 |
ORF1ab/nsp3 | 295 | H295Y | Cac | Tac | 4 | 4 | AY.54 | 0.000381 |
ORF1ab/nsp3 | 295 | H295Y | Cac | Tac | 4 | 4 | AY.75 | 0.000224 |
ORF1ab/nsp3 | 295 | H295Y | Cac | Tac | 4 | 4 | AY.75.1 | 0.000721 |
ORF1ab/nsp3 | 295 | H295Y | Cac | Tac | 4 | 4 | AY.85 | 0.001709 |
ORF1ab/nsp3 | 295 | H295Y | Cac | Tac | 4 | 4 | AY.9.1 | 0.000335 |
ORF1ab/nsp3 | 295 | H295Y | Cac | Tac | 4 | 4 | B | 0.000511 |
ORF1ab/nsp3 | 295 | H295del | CAC | --- | 4 | 4 | B.1.1 | 0.000073 |
ORF1ab/nsp3 | 295 | H295Y | Cac | Tac | 4 | 4 | B.1.177.7 | 0.000659 |
ORF1ab/nsp3 | 295 | H295Y | Cac | Tac | 4 | 4 | B.1.177.73 | 0.002265 |
ORF1ab/nsp3 | 295 | H295R | cAc | cGc | 4 | 4 | B.1.36 | 0.000584 |
ORF1ab/nsp3 | 295 | H295Y | Cac | Tac | 4 | 4 | B.1.36.17 | 0.001976 |
ORF1ab/nsp3 | 295 | H295Y | Cac | Tac | 4 | 4 | B.1.36.31 | 0.007005 |
ORF1ab/nsp3 | 295 | H295Y | Cac | Tac | 4 | 4 | B.1.595 | 0.001044 |
ORF1ab/nsp3 | 295 | H295Y | Cac | Tac | 4 | 4 | B.1.617.1 | 0.000516 |
ORF1ab/nsp3 | 295 | H295Q | caC | caA | 4 | 4 | B.1.617.2 | 0.000015 |
ORF1ab/nsp3 | 295 | H295del | CAC | --- | 4 | 4 | B.1.621 | 0.000354 |
ORF1ab/nsp3 | 295 | H295Y | Cac | Tac | 4 | 4 | B.52 | 0.040404 |
ORF1ab/nsp3 | 295 | H295Q | caC | caA | 4 | 4 | P.1.14 | 0.000191 |
ORF1ab/nsp3 | 295 | H295Y | Cac | Tac | 4 | 4 | P.2 | 0.000747 |
ORF1ab/nsp3 | 295 | H295R | cAc | cGc | 3 | 3 | A | 0.001161 |
ORF1ab/nsp3 | 295 | H295Y | Cac | Tac | 3 | 3 | A.2.5.2 | 0.004717 |
ORF1ab/nsp3 | 295 | H295Y | Cac | Tac | 3 | 3 | A.21 | 0.00831 |
ORF1ab/nsp3 | 295 | H295P | cAC | cCT | 2 | 3 | All | 0 |
ORF1ab/nsp3 | 295 | H295P | cAc | cCc | 1 | 3 | All | 0 |
ORF1ab/nsp3 | 295 | H295Y | Cac | Tac | 3 | 3 | AY.3.1 | 0.000256 |
ORF1ab/nsp3 | 295 | H295Y | Cac | Tac | 3 | 3 | AY.38 | 0.001498 |
ORF1ab/nsp3 | 295 | H295N | Cac | Aac | 3 | 3 | AY.39.1 | 0.000119 |
ORF1ab/nsp3 | 295 | H295Q | caC | caA | 3 | 3 | AY.4 | 0.000005 |
ORF1ab/nsp3 | 295 | H295R | cAc | cGc | 3 | 3 | AY.4 | 0.000005 |
ORF1ab/nsp3 | 295 | H295H | caC | caT | 3 | 3 | AY.5 | 0.000062 |
ORF1ab/nsp3 | 295 | H295Y | Cac | Tac | 3 | 3 | AY.5 | 0.000062 |
ORF1ab/nsp3 | 295 | H295Y | Cac | Tac | 3 | 3 | AY.52 | 0.002443 |
ORF1ab/nsp3 | 295 | H295R | cAc | cGc | 3 | 3 | AY.61 | 0.000314 |
ORF1ab/nsp3 | 295 | H295Y | Cac | Tac | 3 | 3 | AY.69 | 0.00056 |
ORF1ab/nsp3 | 295 | H295H | caC | caT | 3 | 3 | AY.69 | 0.00056 |
ORF1ab/nsp3 | 295 | H295Y | Cac | Tac | 3 | 3 | AY.93 | 0.000819 |
ORF1ab/nsp3 | 295 | H295R | cAc | cGc | 3 | 3 | B.1 | 0.000027 |
ORF1ab/nsp3 | 295 | H295H | caC | caT | 3 | 3 | B.1.1.117 | 0.029126 |
ORF1ab/nsp3 | 295 | H295Y | Cac | Tac | 3 | 3 | B.1.1.222 | 0.000612 |
ORF1ab/nsp3 | 295 | H295Y | Cac | Tac | 3 | 3 | B.1.1.372 | 0.002066 |
ORF1ab/nsp3 | 295 | H295N | Cac | Aac | 3 | 3 | B.1.1.397 | 0.006757 |
ORF1ab/nsp3 | 295 | H295Y | Cac | Tac | 3 | 3 | B.1.1.70 | 0.001023 |
ORF1ab/nsp3 | 295 | H295Y | Cac | Tac | 3 | 3 | B.1.105 | 0.028846 |
ORF1ab/nsp3 | 295 | H295H | caC | caT | 3 | 3 | B.1.177.77 | 0.002179 |
ORF1ab/nsp3 | 295 | H295Y | Cac | Tac | 3 | 3 | B.1.218 | 0.015464 |
ORF1ab/nsp3 | 295 | H295Y | Cac | Tac | 3 | 3 | B.1.241 | 0.002435 |
ORF1ab/nsp3 | 295 | H295Y | Cac | Tac | 3 | 3 | B.1.314 | 0.022556 |
ORF1ab/nsp3 | 295 | H295Q | caC | caA | 3 | 3 | B.1.351 | 0.000089 |
ORF1ab/nsp3 | 295 | H295H | caC | caT | 3 | 3 | B.1.36 | 0.000438 |
ORF1ab/nsp3 | 295 | H295Y | Cac | Tac | 3 | 3 | B.1.36 | 0.000438 |
ORF1ab/nsp3 | 295 | H295Y | Cac | Tac | 3 | 3 | B.1.36.29 | 0.001552 |
ORF1ab/nsp3 | 295 | H295Y | Cac | Tac | 3 | 3 | B.1.568 | 0.003333 |
ORF1ab/nsp3 | 295 | H295Y | Cac | Tac | 3 | 3 | B.1.597 | 0.013889 |
ORF1ab/nsp3 | 295 | H295Y | Cac | Tac | 3 | 3 | B.1.609 | 0.001438 |
ORF1ab/nsp3 | 295 | H295H | caC | caT | 3 | 3 | B.1.621 | 0.000266 |
ORF1ab/nsp3 | 295 | H295Y | Cac | Tac | 3 | 3 | C.35 | 0.002322 |
ORF1ab/nsp3 | 295 | H295H | caC | caT | 3 | 3 | C.37 | 0.000348 |
ORF1ab/nsp3 | 295 | H295del | CAC | --- | 3 | 3 | C.37 | 0.000348 |
ORF1ab/nsp3 | 295 | H295H | caC | caT | 3 | 3 | P.1 | 0.000047 |
ORF1ab/nsp3 | 295 | H295del | CAC | --- | 3 | 3 | P.1.14 | 0.000143 |
ORF1ab/nsp3 | 295 | H295Y | Cac | Tac | 3 | 3 | P.1.15 | 0.000697 |
ORF1ab/nsp3 | 295 | H295R | cAc | cGc | 3 | 3 | Q.3 | 0.000435 |
ORF1ab/nsp3 | 295 | H295Y | Cac | Tac | 3 | 3 | Q.8 | 0.000495 |
ORF1ab/nsp3 | 295 | H295Y | Cac | Tac | 2 | 2 | 0.111111 | |
ORF1ab/nsp3 | 295 | H295P | cAC | cCT | 2 | 2 | 0.111111 | |
ORF1ab/nsp3 | 295 | H295del | CAC | --- | 2 | 2 | 0.111111 | |
ORF1ab/nsp3 | 295 | H295Y | Cac | Tac | 2 | 2 | A | 0.000774 |
ORF1ab/nsp3 | 295 | H295H | caC | caT | 2 | 2 | A | 0.000774 |
ORF1ab/nsp3 | 295 | H295H | caC | caT | 2 | 2 | A.2.5 | 0.000998 |
ORF1ab/nsp3 | 295 | H295Y | Cac | Tac | 2 | 2 | AD.2 | 0.000438 |
ORF1ab/nsp3 | 295 | H295Y | Cac | Tac | 2 | 2 | AL.1 | 0.025974 |
ORF1ab/nsp3 | 295 | H295del2 | CAc | --c | 1 | 2 | All | 0 |
ORF1ab/nsp3 | 295 | H295I | CAC | ATT | 1 | 2 | All | 0 |
ORF1ab/nsp3 | 295 | H295I | CAc | ATc | 1 | 2 | All | 0 |
ORF1ab/nsp3 | 295 | H295del2 | CAC | --N | 1 | 2 | All | 0 |
ORF1ab/nsp3 | 295 | H295Y | Cac | Tac | 2 | 2 | AY.1 | 0.000791 |
ORF1ab/nsp3 | 295 | H295del | CAC | --- | 2 | 2 | AY.100 | 0.000092 |
ORF1ab/nsp3 | 295 | H295N | Cac | Aac | 2 | 2 | AY.101 | 0.000981 |
ORF1ab/nsp3 | 295 | H295H | caC | caT | 2 | 2 | AY.102 | 0.000053 |
ORF1ab/nsp3 | 295 | H295Y | Cac | Tac | 2 | 2 | AY.116 | 0.000574 |
ORF1ab/nsp3 | 295 | H295H | caC | caT | 2 | 2 | AY.120 | 0.000074 |
ORF1ab/nsp3 | 295 | H295H | caC | caT | 2 | 2 | AY.20 | 0.000078 |
ORF1ab/nsp3 | 295 | H295H | caC | caT | 2 | 2 | AY.23 | 0.000139 |
ORF1ab/nsp3 | 295 | H295H | caC | caT | 2 | 2 | AY.26 | 0.000057 |
ORF1ab/nsp3 | 295 | H295H | caC | caT | 2 | 2 | AY.27 | 0.000129 |
ORF1ab/nsp3 | 295 | H295Q | caC | caA | 2 | 2 | AY.3 | 0.00002 |
ORF1ab/nsp3 | 295 | H295Y | Cac | Tac | 2 | 2 | AY.31 | 0.037037 |
ORF1ab/nsp3 | 295 | H295H | caC | caT | 2 | 2 | AY.34.1 | 0.00102 |
ORF1ab/nsp3 | 295 | H295Y | Cac | Tac | 2 | 2 | AY.36 | 0.000296 |
ORF1ab/nsp3 | 295 | H295H | caC | caT | 2 | 2 | AY.36 | 0.000296 |
ORF1ab/nsp3 | 295 | H295Y | Cac | Tac | 2 | 2 | AY.37 | 0.000632 |
ORF1ab/nsp3 | 295 | H295Y | Cac | Tac | 2 | 2 | AY.39.2 | 0.003082 |
ORF1ab/nsp3 | 295 | H295R | cAc | cGc | 2 | 2 | AY.4.2 | 0.000043 |
ORF1ab/nsp3 | 295 | H295Q | caC | caA | 2 | 2 | AY.43 | 0.000009 |
ORF1ab/nsp3 | 295 | H295H | caC | caT | 2 | 2 | AY.45 | 0.000243 |
ORF1ab/nsp3 | 295 | H295H | caC | caT | 2 | 2 | AY.46.6 | 0.000144 |
ORF1ab/nsp3 | 295 | H295Y | Cac | Tac | 2 | 2 | AY.46.6 | 0.000144 |
ORF1ab/nsp3 | 295 | H295Y | Cac | Tac | 2 | 2 | AY.48 | 0.00093 |
ORF1ab/nsp3 | 295 | H295H | caC | caT | 2 | 2 | AY.8 | 0.001212 |
ORF1ab/nsp3 | 295 | H295Y | Cac | Tac | 2 | 2 | AY.82 | 0.002714 |
ORF1ab/nsp3 | 295 | H295Y | Cac | Tac | 2 | 2 | AY.99.2 | 0.000184 |
ORF1ab/nsp3 | 295 | H295Q | caC | caG | 1 | 2 | B.1.1 | 0.000018 |
ORF1ab/nsp3 | 295 | H295Q | caC | caA | 1 | 2 | B.1.1 | 0.000018 |
ORF1ab/nsp3 | 295 | H295R | cAc | cGc | 2 | 2 | B.1.1.222 | 0.000408 |
ORF1ab/nsp3 | 295 | H295Y | Cac | Tac | 2 | 2 | B.1.1.25 | 0.001137 |
ORF1ab/nsp3 | 295 | H295H | caC | caT | 2 | 2 | B.1.1.297 | 0.004474 |
ORF1ab/nsp3 | 295 | H295Y | Cac | Tac | 2 | 2 | B.1.1.306 | 0.000877 |
ORF1ab/nsp3 | 295 | H295Y | Cac | Tac | 2 | 2 | B.1.1.316 | 0.00185 |
ORF1ab/nsp3 | 295 | H295Y | Cac | Tac | 2 | 2 | B.1.1.317 | 0.000823 |
ORF1ab/nsp3 | 295 | H295H | caC | caT | 2 | 2 | B.1.1.339 | 0.021053 |
ORF1ab/nsp3 | 295 | H295Y | Cac | Tac | 2 | 2 | B.1.177.31 | 0.022989 |
ORF1ab/nsp3 | 295 | H295Y | Cac | Tac | 2 | 2 | B.1.177.35 | 0.001382 |
ORF1ab/nsp3 | 295 | H295H | caC | caT | 2 | 2 | B.1.177.4 | 0.000422 |
ORF1ab/nsp3 | 295 | H295Y | Cac | Tac | 2 | 2 | B.1.177.81 | 0.000379 |
ORF1ab/nsp3 | 295 | H295Y | Cac | Tac | 2 | 2 | B.1.177.86 | 0.000367 |
ORF1ab/nsp3 | 295 | H295Y | Cac | Tac | 2 | 2 | B.1.232 | 0.001075 |
ORF1ab/nsp3 | 295 | H295H | caC | caT | 2 | 2 | B.1.239 | 0.002442 |
ORF1ab/nsp3 | 295 | H295H | caC | caT | 2 | 2 | B.1.3 | 0.005236 |
ORF1ab/nsp3 | 295 | H295Y | Cac | Tac | 2 | 2 | B.1.36.8 | 0.002 |
ORF1ab/nsp3 | 295 | H295Y | Cac | Tac | 2 | 2 | B.1.396 | 0.001411 |
ORF1ab/nsp3 | 295 | H295Y | Cac | Tac | 2 | 2 | B.1.438.1 | 0.000215 |
ORF1ab/nsp3 | 295 | H295Y | Cac | Tac | 2 | 2 | B.1.459 | 0.008163 |
ORF1ab/nsp3 | 295 | H295Y | Cac | Tac | 2 | 2 | B.1.517 | 0.000854 |
ORF1ab/nsp3 | 295 | H295H | caC | caT | 2 | 2 | B.1.576 | 0.001813 |
ORF1ab/nsp3 | 295 | H295Y | Cac | Tac | 2 | 2 | B.1.596 | 0.000174 |
ORF1ab/nsp3 | 295 | H295Y | Cac | Tac | 2 | 2 | B.1.599 | 0.007299 |
ORF1ab/nsp3 | 295 | H295Y | Cac | Tac | 2 | 2 | B.1.632 | 0.013423 |
ORF1ab/nsp3 | 295 | H295Y | Cac | Tac | 2 | 2 | B.40 | 0.000729 |
ORF1ab/nsp3 | 295 | H295Y | Cac | Tac | 2 | 2 | C.14 | 0.008658 |
ORF1ab/nsp3 | 295 | H295Y | Cac | Tac | 2 | 2 | C.36.3 | 0.001134 |
ORF1ab/nsp3 | 295 | H295H | caC | caT | 2 | 2 | D.2 | 0.00015 |
ORF1ab/nsp3 | 295 | H295del | CAC | --- | 2 | 2 | N.6 | 0.014184 |
ORF1ab/nsp3 | 295 | H295Y | Cac | Tac | 2 | 2 | N.9 | 0.011905 |
ORF1ab/nsp3 | 295 | H295Q | caC | caA | 2 | 2 | P.1 | 0.000032 |
ORF1ab/nsp3 | 295 | H295H | caC | caT | 2 | 2 | P.1.14 | 0.000096 |
ORF1ab/nsp3 | 295 | H295H | caC | caT | 2 | 2 | P.1.17 | 0.000324 |
ORF1ab/nsp3 | 295 | H295del | CAC | --- | 2 | 2 | P.1.7 | 0.000639 |
ORF1ab/nsp3 | 295 | H295Y | Cac | Tac | 2 | 2 | Q.1 | 0.000253 |
ORF1ab/nsp3 | 295 | H295Y | Cac | Tac | 2 | 2 | S.1 | 0.009901 |
ORF1ab/nsp3 | 295 | H295H | caC | caT | 1 | 1 | A.2.5.3 | 0.010309 |
ORF1ab/nsp3 | 295 | H295Y | Cac | Tac | 1 | 1 | A.23.1 | 0.000704 |
ORF1ab/nsp3 | 295 | H295H | caC | caT | 1 | 1 | A.27 | 0.001656 |
ORF1ab/nsp3 | 295 | H295Y | Cac | Tac | 1 | 1 | A.3 | 0.002096 |
ORF1ab/nsp3 | 295 | H295T | CAC | ACA | 1 | 1 | All | 0 |
ORF1ab/nsp3 | 295 | H295E | CaC | GaG | 1 | 1 | All | 0 |
ORF1ab/nsp3 | 295 | H295C | CAc | TGc | 1 | 1 | All | 0 |
ORF1ab/nsp3 | 295 | H295del1 | caC | ca- | 1 | 1 | All | 0 |
ORF1ab/nsp3 | 295 | H295H | caC | caT | 1 | 1 | AY.100 | 0.000046 |
ORF1ab/nsp3 | 295 | H295R | cAc | cGc | 1 | 1 | AY.102 | 0.000027 |
ORF1ab/nsp3 | 295 | H295Q | caC | caA | 1 | 1 | AY.103 | 0.000006 |
ORF1ab/nsp3 | 295 | H295H | caC | caT | 1 | 1 | AY.107 | 0.000466 |
ORF1ab/nsp3 | 295 | H295Q | caC | caA | 1 | 1 | AY.108 | 0.001103 |
ORF1ab/nsp3 | 295 | H295H | caC | caT | 1 | 1 | AY.110 | 0.000113 |
ORF1ab/nsp3 | 295 | H295H | caC | caT | 1 | 1 | AY.113 | 0.000142 |
ORF1ab/nsp3 | 295 | H295Y | Cac | Tac | 1 | 1 | AY.12 | 0.000316 |
ORF1ab/nsp3 | 295 | H295R | cAc | cGc | 1 | 1 | AY.12 | 0.000316 |
ORF1ab/nsp3 | 295 | H295Q | caC | caA | 1 | 1 | AY.120.2 | 0.001285 |
ORF1ab/nsp3 | 295 | H295H | caC | caT | 1 | 1 | AY.121 | 0.000135 |
ORF1ab/nsp3 | 295 | H295Y | Cac | Tac | 1 | 1 | AY.121 | 0.000135 |
ORF1ab/nsp3 | 295 | H295Y | Cac | Tac | 1 | 1 | AY.13 | 0.000161 |
ORF1ab/nsp3 | 295 | H295Y | Cac | Tac | 1 | 1 | AY.16 | 0.00038 |
ORF1ab/nsp3 | 295 | H295Y | Cac | Tac | 1 | 1 | AY.19 | 0.00114 |
ORF1ab/nsp3 | 295 | H295del | CAC | --- | 1 | 1 | AY.23 | 0.00007 |
ORF1ab/nsp3 | 295 | H295Y | Cac | Tac | 1 | 1 | AY.23.1 | 0.000417 |
ORF1ab/nsp3 | 295 | H295del | CAC | --- | 1 | 1 | AY.24 | 0.000431 |
ORF1ab/nsp3 | 295 | H295R | cAc | cGc | 1 | 1 | AY.25 | 0.000006 |
ORF1ab/nsp3 | 295 | H295del | CAC | --- | 1 | 1 | AY.25 | 0.000006 |
ORF1ab/nsp3 | 295 | H295Q | caC | caA | 1 | 1 | AY.25 | 0.000006 |
ORF1ab/nsp3 | 295 | H295del | CAC | --- | 1 | 1 | AY.26 | 0.000028 |
ORF1ab/nsp3 | 295 | H295Q | caC | caA | 1 | 1 | AY.27 | 0.000065 |
ORF1ab/nsp3 | 295 | H295H | caC | caT | 1 | 1 | AY.3.1 | 0.000085 |
ORF1ab/nsp3 | 295 | H295L | cAc | cTc | 1 | 1 | AY.3.1 | 0.000085 |
ORF1ab/nsp3 | 295 | H295Y | Cac | Tac | 1 | 1 | AY.34.1 | 0.00051 |
ORF1ab/nsp3 | 295 | H295Y | Cac | Tac | 1 | 1 | AY.35 | 0.000233 |
ORF1ab/nsp3 | 295 | H295H | caC | caT | 1 | 1 | AY.39 | 0.000025 |
ORF1ab/nsp3 | 295 | H295N | Cac | Aac | 1 | 1 | AY.4 | 0.000002 |
ORF1ab/nsp3 | 295 | H295Y | Cac | Tac | 1 | 1 | AY.4.2.1 | 0.000149 |
ORF1ab/nsp3 | 295 | H295Y | Cac | Tac | 1 | 1 | AY.4.5 | 0.000107 |
ORF1ab/nsp3 | 295 | H295H | caC | caT | 1 | 1 | AY.42 | 0.00004 |
ORF1ab/nsp3 | 295 | H295del | CAC | --- | 1 | 1 | AY.43 | 0.000004 |
ORF1ab/nsp3 | 295 | H295del | CAC | --- | 1 | 1 | AY.45 | 0.000122 |
ORF1ab/nsp3 | 295 | H295H | caC | caT | 1 | 1 | AY.46 | 0.000104 |
ORF1ab/nsp3 | 295 | H295Y | Cac | Tac | 1 | 1 | AY.46.1 | 0.001027 |
ORF1ab/nsp3 | 295 | H295Q | caC | caA | 1 | 1 | AY.46.6 | 0.000072 |
ORF1ab/nsp3 | 295 | H295H | caC | caT | 1 | 1 | AY.47 | 0.000031 |
ORF1ab/nsp3 | 295 | H295Y | Cac | Tac | 1 | 1 | AY.55 | 0.000917 |
ORF1ab/nsp3 | 295 | H295Y | Cac | Tac | 1 | 1 | AY.59 | 0.00053 |
ORF1ab/nsp3 | 295 | H295R | cAc | cGc | 1 | 1 | AY.6 | 0.000041 |
ORF1ab/nsp3 | 295 | H295Q | caC | caA | 1 | 1 | AY.6 | 0.000041 |
ORF1ab/nsp3 | 295 | H295Y | Cac | Tac | 1 | 1 | AY.61 | 0.000105 |
ORF1ab/nsp3 | 295 | H295H | caC | caT | 1 | 1 | AY.61 | 0.000105 |
ORF1ab/nsp3 | 295 | H295del1 | caC | ca- | 1 | 1 | AY.67 | 0.000464 |
ORF1ab/nsp3 | 295 | H295del | CAC | --- | 1 | 1 | AY.68 | 0.000274 |
ORF1ab/nsp3 | 295 | H295Y | Cac | Tac | 1 | 1 | AY.68 | 0.000274 |
ORF1ab/nsp3 | 295 | H295H | caC | caT | 1 | 1 | AY.7 | 0.000196 |
ORF1ab/nsp3 | 295 | H295Y | Cac | Tac | 1 | 1 | AY.71 | 0.000475 |
ORF1ab/nsp3 | 295 | H295Y | Cac | Tac | 1 | 1 | AY.72 | 0.001361 |
ORF1ab/nsp3 | 295 | H295L | cAc | cTc | 1 | 1 | AY.77 | 0.001127 |
ORF1ab/nsp3 | 295 | H295Y | Cac | Tac | 1 | 1 | AY.80 | 0.001129 |
ORF1ab/nsp3 | 295 | H295T | CAC | ACA | 1 | 1 | AY.84 | 0.000437 |
ORF1ab/nsp3 | 295 | H295E | CaC | GaG | 1 | 1 | AY.85 | 0.000427 |
ORF1ab/nsp3 | 295 | H295H | caC | caT | 1 | 1 | AY.86 | 0.00083 |
ORF1ab/nsp3 | 295 | H295Y | Cac | Tac | 1 | 1 | AY.88 | 0.000884 |
ORF1ab/nsp3 | 295 | H295R | cAc | cGc | 1 | 1 | AY.9.2 | 0.000037 |
ORF1ab/nsp3 | 295 | H295H | caC | caT | 1 | 1 | AY.9.2 | 0.000037 |
ORF1ab/nsp3 | 295 | H295R | cAc | cGc | 1 | 1 | AY.92 | 0.000287 |
ORF1ab/nsp3 | 295 | H295Y | Cac | Tac | 1 | 1 | AY.94 | 0.000443 |
ORF1ab/nsp3 | 295 | H295Y | Cac | Tac | 1 | 1 | AY.95 | 0.000761 |
ORF1ab/nsp3 | 295 | H295Q | caC | caA | 1 | 1 | AY.98 | 0.000079 |
ORF1ab/nsp3 | 295 | H295del | CAC | --- | 1 | 1 | AY.99 | 0.001049 |
ORF1ab/nsp3 | 295 | H295H | caC | caT | 1 | 1 | B | 0.000128 |
ORF1ab/nsp3 | 295 | H295N | Cac | Aac | 1 | 1 | B.1 | 0.000009 |
ORF1ab/nsp3 | 295 | H295I | CAc | ATc | 1 | 1 | B.1.1 | 0.000018 |
ORF1ab/nsp3 | 295 | H295Y | Cac | Tac | 1 | 1 | B.1.1.10 | 0.001115 |
ORF1ab/nsp3 | 295 | H295Y | Cac | Tac | 1 | 1 | B.1.1.141 | 0.002012 |
ORF1ab/nsp3 | 295 | H295N | Cac | Aac | 1 | 1 | B.1.1.153 | 0.001095 |
ORF1ab/nsp3 | 295 | H295Y | Cac | Tac | 1 | 1 | B.1.1.189 | 0.001513 |
ORF1ab/nsp3 | 295 | H295Y | Cac | Tac | 1 | 1 | B.1.1.200 | 0.007463 |
ORF1ab/nsp3 | 295 | H295R | cAc | cGc | 1 | 1 | B.1.1.214 | 0.000055 |
ORF1ab/nsp3 | 295 | H295R | cAc | cGc | 1 | 1 | B.1.1.216 | 0.00089 |
ORF1ab/nsp3 | 295 | H295Y | Cac | Tac | 1 | 1 | B.1.1.220 | 0.001859 |
ORF1ab/nsp3 | 295 | H295H | caC | caT | 1 | 1 | B.1.1.220 | 0.001859 |
ORF1ab/nsp3 | 295 | H295H | caC | caT | 1 | 1 | B.1.1.222 | 0.000204 |
ORF1ab/nsp3 | 295 | H295Y | Cac | Tac | 1 | 1 | B.1.1.243 | 0.004082 |
ORF1ab/nsp3 | 295 | H295Y | Cac | Tac | 1 | 1 | B.1.1.269 | 0.001353 |
ORF1ab/nsp3 | 295 | H295Y | Cac | Tac | 1 | 1 | B.1.1.277 | 0.000759 |
ORF1ab/nsp3 | 295 | H295Y | Cac | Tac | 1 | 1 | B.1.1.28 | 0.000311 |
ORF1ab/nsp3 | 295 | H295H | caC | caT | 1 | 1 | B.1.1.294 | 0.001266 |
ORF1ab/nsp3 | 295 | H295Y | Cac | Tac | 1 | 1 | B.1.1.302 | 0.002075 |
ORF1ab/nsp3 | 295 | H295del | CAC | --- | 1 | 1 | B.1.1.306 | 0.000438 |
ORF1ab/nsp3 | 295 | H295H | caC | caT | 1 | 1 | B.1.1.306 | 0.000438 |
ORF1ab/nsp3 | 295 | H295R | cAc | cGc | 1 | 1 | B.1.1.315 | 0.008475 |
ORF1ab/nsp3 | 295 | H295Y | Cac | Tac | 1 | 1 | B.1.1.326 | 0.001761 |
ORF1ab/nsp3 | 295 | H295Y | Cac | Tac | 1 | 1 | B.1.1.33 | 0.000421 |
ORF1ab/nsp3 | 295 | H295del | CAC | --- | 1 | 1 | B.1.1.33 | 0.000421 |
ORF1ab/nsp3 | 295 | H295del | CAC | --- | 1 | 1 | B.1.1.348 | 0.000796 |
ORF1ab/nsp3 | 295 | H295Y | Cac | Tac | 1 | 1 | B.1.1.351 | 0.002793 |
ORF1ab/nsp3 | 295 | H295Y | Cac | Tac | 1 | 1 | B.1.1.370 | 0.012658 |
ORF1ab/nsp3 | 295 | H295Y | Cac | Tac | 1 | 1 | B.1.1.374 | 0.002375 |
ORF1ab/nsp3 | 295 | H295Y | Cac | Tac | 1 | 1 | B.1.1.389 | 0.006061 |
ORF1ab/nsp3 | 295 | H295Y | Cac | Tac | 1 | 1 | B.1.1.391 | 0.008547 |
ORF1ab/nsp3 | 295 | H295Y | Cac | Tac | 1 | 1 | B.1.1.413 | 0.006897 |
ORF1ab/nsp3 | 295 | H295R | cAc | cGc | 1 | 1 | B.1.1.419 | 0.007407 |
ORF1ab/nsp3 | 295 | H295H | caC | caT | 1 | 1 | B.1.1.47 | 0.005348 |
ORF1ab/nsp3 | 295 | H295Y | Cac | Tac | 1 | 1 | B.1.1.48 | 0.002874 |
ORF1ab/nsp3 | 295 | H295H | caC | caT | 1 | 1 | B.1.1.482 | 0.023256 |
ORF1ab/nsp3 | 295 | H295Y | Cac | Tac | 1 | 1 | B.1.1.50 | 0.000679 |
ORF1ab/nsp3 | 295 | H295N | Cac | Aac | 1 | 1 | B.1.1.519 | 0.00004 |
ORF1ab/nsp3 | 295 | H295Y | Cac | Tac | 1 | 1 | B.1.1.54 | 0.003021 |
ORF1ab/nsp3 | 295 | H295R | cAc | cGc | 1 | 1 | B.1.1.54 | 0.003021 |
ORF1ab/nsp3 | 295 | H295Y | Cac | Tac | 1 | 1 | B.1.1.63 | 0.000386 |
ORF1ab/nsp3 | 295 | H295del2 | CAC | --N | 1 | 1 | B.1.1.7 | 0.000001 |
ORF1ab/nsp3 | 295 | H295I | CAC | ATT | 1 | 1 | B.1.1.7 | 0.000001 |
ORF1ab/nsp3 | 295 | H295Y | Cac | Tac | 1 | 1 | B.1.104 | 0.00369 |
ORF1ab/nsp3 | 295 | H295Y | Cac | Tac | 1 | 1 | B.1.110.3 | 0.000718 |
ORF1ab/nsp3 | 295 | H295Y | Cac | Tac | 1 | 1 | B.1.128 | 0.000635 |
ORF1ab/nsp3 | 295 | H295Y | Cac | Tac | 1 | 1 | B.1.139 | 0.000733 |
ORF1ab/nsp3 | 295 | H295Q | caC | caA | 1 | 1 | B.1.160 | 0.000031 |
ORF1ab/nsp3 | 295 | H295L | cAc | cTc | 1 | 1 | B.1.160.32 | 0.004292 |
ORF1ab/nsp3 | 295 | H295Q | caC | caG | 1 | 1 | B.1.177 | 0.000013 |
ORF1ab/nsp3 | 295 | H295del | CAC | --- | 1 | 1 | B.1.177 | 0.000013 |
ORF1ab/nsp3 | 295 | H295H | caC | caT | 1 | 1 | B.1.177.21 | 0.000076 |
ORF1ab/nsp3 | 295 | H295R | cAc | cGc | 1 | 1 | B.1.177.23 | 0.003236 |
ORF1ab/nsp3 | 295 | H295Y | Cac | Tac | 1 | 1 | B.1.177.44 | 0.000519 |
ORF1ab/nsp3 | 295 | H295Q | caC | caG | 1 | 1 | B.1.177.46 | 0.000918 |
ORF1ab/nsp3 | 295 | H295H | caC | caT | 1 | 1 | B.1.177.54 | 0.000606 |
ORF1ab/nsp3 | 295 | H295Y | Cac | Tac | 1 | 1 | B.1.177.6 | 0.000977 |
ORF1ab/nsp3 | 295 | H295Y | Cac | Tac | 1 | 1 | B.1.177.62 | 0.001192 |
ORF1ab/nsp3 | 295 | H295P | cAc | cCc | 1 | 1 | B.1.177.73 | 0.000566 |
ORF1ab/nsp3 | 295 | H295H | caC | caT | 1 | 1 | B.1.177.76 | 0.002494 |
ORF1ab/nsp3 | 295 | H295Y | Cac | Tac | 1 | 1 | B.1.177.8 | 0.000752 |
ORF1ab/nsp3 | 295 | H295Y | Cac | Tac | 1 | 1 | B.1.177.84 | 0.006667 |
ORF1ab/nsp3 | 295 | H295H | caC | caT | 1 | 1 | B.1.177.86 | 0.000183 |
ORF1ab/nsp3 | 295 | H295Y | Cac | Tac | 1 | 1 | B.1.177.87 | 0.000728 |
ORF1ab/nsp3 | 295 | H295N | Cac | Aac | 1 | 1 | B.1.2 | 0.000009 |
ORF1ab/nsp3 | 295 | H295del | CAC | --- | 1 | 1 | B.1.2 | 0.000009 |
ORF1ab/nsp3 | 295 | H295del | CAC | --- | 1 | 1 | B.1.218 | 0.005155 |
ORF1ab/nsp3 | 295 | H295Y | Cac | Tac | 1 | 1 | B.1.22 | 0.001318 |
ORF1ab/nsp3 | 295 | H295H | caC | caT | 1 | 1 | B.1.223 | 0.002778 |
ORF1ab/nsp3 | 295 | H295H | caC | caT | 1 | 1 | B.1.232 | 0.000537 |
ORF1ab/nsp3 | 295 | H295del | CAC | --- | 1 | 1 | B.1.243 | 0.00007 |
ORF1ab/nsp3 | 295 | H295Y | Cac | Tac | 1 | 1 | B.1.258.11 | 0.000396 |
ORF1ab/nsp3 | 295 | H295Y | Cac | Tac | 1 | 1 | B.1.258.17 | 0.000104 |
ORF1ab/nsp3 | 295 | H295Y | Cac | Tac | 1 | 1 | B.1.258.5 | 0.008772 |
ORF1ab/nsp3 | 295 | H295H | caC | caT | 1 | 1 | B.1.260 | 0.003344 |
ORF1ab/nsp3 | 295 | H295H | caC | caT | 1 | 1 | B.1.284 | 0.013158 |
ORF1ab/nsp3 | 295 | H295Q | caC | caG | 1 | 1 | B.1.284 | 0.013158 |
ORF1ab/nsp3 | 295 | H295H | caC | caT | 1 | 1 | B.1.301 | 0.005917 |
ORF1ab/nsp3 | 295 | H295Y | Cac | Tac | 1 | 1 | B.1.311 | 0.000275 |
ORF1ab/nsp3 | 295 | H295Y | Cac | Tac | 1 | 1 | B.1.336 | 0.002439 |
ORF1ab/nsp3 | 295 | H295D | Cac | Gac | 1 | 1 | B.1.351 | 0.00003 |
ORF1ab/nsp3 | 295 | H295N | Cac | Aac | 1 | 1 | B.1.351 | 0.00003 |
ORF1ab/nsp3 | 295 | H295del | CAC | --- | 1 | 1 | B.1.36 | 0.000146 |
ORF1ab/nsp3 | 295 | H295H | caC | caT | 1 | 1 | B.1.36.38 | 0.001642 |
ORF1ab/nsp3 | 295 | H295Y | Cac | Tac | 1 | 1 | B.1.36.7 | 0.004 |
ORF1ab/nsp3 | 295 | H295Y | Cac | Tac | 1 | 1 | B.1.362 | 0.001541 |
ORF1ab/nsp3 | 295 | H295H | caC | caT | 1 | 1 | B.1.362 | 0.001541 |
ORF1ab/nsp3 | 295 | H295Y | Cac | Tac | 1 | 1 | B.1.371 | 0.001122 |
ORF1ab/nsp3 | 295 | H295Y | Cac | Tac | 1 | 1 | B.1.382 | 0.008929 |
ORF1ab/nsp3 | 295 | H295Q | caC | caA | 1 | 1 | B.1.389 | 0.001002 |
ORF1ab/nsp3 | 295 | H295Y | Cac | Tac | 1 | 1 | B.1.400 | 0.000429 |
ORF1ab/nsp3 | 295 | H295Y | Cac | Tac | 1 | 1 | B.1.402 | 0.009804 |
ORF1ab/nsp3 | 295 | H295del | CAC | --- | 1 | 1 | B.1.416 | 0.001269 |
ORF1ab/nsp3 | 295 | H295Y | Cac | Tac | 1 | 1 | B.1.416.1 | 0.001563 |
ORF1ab/nsp3 | 295 | H295Q | caC | caA | 1 | 1 | B.1.427 | 0.00005 |
ORF1ab/nsp3 | 295 | H295Y | Cac | Tac | 1 | 1 | B.1.428 | 0.00102 |
ORF1ab/nsp3 | 295 | H295Q | caC | caA | 1 | 1 | B.1.429 | 0.000024 |
ORF1ab/nsp3 | 295 | H295del | CAC | --- | 1 | 1 | B.1.429 | 0.000024 |
ORF1ab/nsp3 | 295 | H295Y | Cac | Tac | 1 | 1 | B.1.436 | 0.001029 |
ORF1ab/nsp3 | 295 | H295Y | Cac | Tac | 1 | 1 | B.1.445 | 0.011765 |
ORF1ab/nsp3 | 295 | H295H | caC | caT | 1 | 1 | B.1.466.2 | 0.000391 |
ORF1ab/nsp3 | 295 | H295Y | Cac | Tac | 1 | 1 | B.1.470 | 0.001404 |
ORF1ab/nsp3 | 295 | H295H | caC | caT | 1 | 1 | B.1.480 | 0.002488 |
ORF1ab/nsp3 | 295 | H295H | caC | caT | 1 | 1 | B.1.499 | 0.00105 |
ORF1ab/nsp3 | 295 | H295del | CAC | --- | 1 | 1 | B.1.517 | 0.000427 |
ORF1ab/nsp3 | 295 | H295R | cAc | cGc | 1 | 1 | B.1.526 | 0.000024 |
ORF1ab/nsp3 | 295 | H295Y | Cac | Tac | 1 | 1 | B.1.551 | 0.00129 |
ORF1ab/nsp3 | 295 | H295Y | Cac | Tac | 1 | 1 | B.1.561 | 0.000397 |
ORF1ab/nsp3 | 295 | H295Y | Cac | Tac | 1 | 1 | B.1.567 | 0.003333 |
ORF1ab/nsp3 | 295 | H295Y | Cac | Tac | 1 | 1 | B.1.574 | 0.002151 |
ORF1ab/nsp3 | 295 | H295H | caC | caT | 1 | 1 | B.1.580 | 0.004065 |
ORF1ab/nsp3 | 295 | H295H | caC | caT | 1 | 1 | B.1.581 | 0.009434 |
ORF1ab/nsp3 | 295 | H295H | caC | caT | 1 | 1 | B.1.596 | 0.000087 |
ORF1ab/nsp3 | 295 | H295del | CAC | --- | 1 | 1 | B.1.596 | 0.000087 |
ORF1ab/nsp3 | 295 | H295H | caC | caT | 1 | 1 | B.1.612 | 0.002653 |
ORF1ab/nsp3 | 295 | H295H | caC | caT | 1 | 1 | B.1.617.1 | 0.000129 |
ORF1ab/nsp3 | 295 | H295N | Cac | Aac | 1 | 1 | B.1.617.2 | 0.000004 |
ORF1ab/nsp3 | 295 | H295C | CAc | TGc | 1 | 1 | B.1.617.2 | 0.000004 |
ORF1ab/nsp3 | 295 | H295L | cAc | cTc | 1 | 1 | B.1.617.2 | 0.000004 |
ORF1ab/nsp3 | 295 | H295Y | Cac | Tac | 1 | 1 | B.1.619.1 | 0.000641 |
ORF1ab/nsp3 | 295 | H295del | CAC | --- | 1 | 1 | B.1.627 | 0.00202 |
ORF1ab/nsp3 | 295 | H295R | cAc | cGc | 1 | 1 | B.10 | 0.008264 |
ORF1ab/nsp3 | 295 | H295Y | Cac | Tac | 1 | 1 | B.3.1 | 0.001658 |
ORF1ab/nsp3 | 295 | H295Q | caC | caA | 1 | 1 | B.39 | 0.002331 |
ORF1ab/nsp3 | 295 | H295H | caC | caT | 1 | 1 | B.6 | 0.00091 |
ORF1ab/nsp3 | 295 | H295Y | Cac | Tac | 1 | 1 | C.30 | 0.001727 |
ORF1ab/nsp3 | 295 | H295H | caC | caT | 1 | 1 | C.36 | 0.000911 |
ORF1ab/nsp3 | 295 | H295R | cAc | cGc | 1 | 1 | C.36 | 0.000911 |
ORF1ab/nsp3 | 295 | H295Y | Cac | Tac | 1 | 1 | C.37.1 | 0.002618 |
ORF1ab/nsp3 | 295 | H295Y | Cac | Tac | 1 | 1 | C.4 | 0.01 |
ORF1ab/nsp3 | 295 | H295N | Cac | Aac | 1 | 1 | P.1 | 0.000016 |
ORF1ab/nsp3 | 295 | H295del2 | CAc | --c | 1 | 1 | P.1 | 0.000016 |
ORF1ab/nsp3 | 295 | H295R | cAc | cGc | 1 | 1 | P.1 | 0.000016 |
ORF1ab/nsp3 | 295 | H295del | CAC | --- | 1 | 1 | P.1.1 | 0.000318 |
ORF1ab/nsp3 | 295 | H295del | CAC | --- | 1 | 1 | P.1.10 | 0.000269 |
ORF1ab/nsp3 | 295 | H295Y | Cac | Tac | 1 | 1 | P.1.12 | 0.000484 |
ORF1ab/nsp3 | 295 | H295del | CAC | --- | 1 | 1 | P.1.13 | 0.000898 |
ORF1ab/nsp3 | 295 | H295H | caC | caT | 1 | 1 | P.1.15 | 0.000232 |
ORF1ab/nsp3 | 295 | H295Y | Cac | Tac | 1 | 1 | P.1.17.1 | 0.000875 |
ORF1ab/nsp3 | 295 | H295del | CAC | --- | 1 | 1 | P.1.2 | 0.001156 |
ORF1ab/nsp3 | 295 | H295Y | Cac | Tac | 1 | 1 | P.1.4 | 0.000977 |
ORF1ab/nsp3 | 295 | H295Y | Cac | Tac | 1 | 1 | P.1.6 | 0.001946 |
ORF1ab/nsp3 | 295 | H295Y | Cac | Tac | 1 | 1 | P.1.7 | 0.000319 |
ORF1ab/nsp3 | 295 | H295H | caC | caT | 1 | 1 | P.3 | 0.001595 |
ORF1ab/nsp3 | 295 | H295Y | Cac | Tac | 1 | 1 | Q.3 | 0.000145 |
ORF1ab/nsp3 | 295 | H295H | caC | caT | 1 | 1 | Q.8 | 0.000165 |
ORF1ab/nsp3 | 295 | H295N | Cac | Aac | 1 | 1 | Q.8 | 0.000165 |
ORF1ab/nsp3 | 295 | H295H | caC | caT | 1 | 1 | R.1 | 0.00009 |
ORF1ab/nsp3 | 295 | H295Y | Cac | Tac | 1 | 1 | W.1 | 0.008696 |
ORF1ab/nsp3 | 295 | H295R | cAc | cGc | 1 | 1 | Z.1 | 0.00289 |
![]() |
![]() |
CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk
|