CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF1ab/nsp3 : CodonNum = 295

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF1ab/nsp3295H295YH1113YnonsynCacTac22683226810.9999123602-3604
ORF1ab/nsp3295H295YH1113YnonsynCaCTaT2268320.00008817183602-3604
ORF1ab/nsp3295H295HH1113HsyncaCcaT1607160713602-3604
ORF1ab/nsp3295H295RH1113RnonsyncAccGc20620613602-3604
ORF1ab/nsp3295H295delH1113deldelCAC---11411413602-3604
ORF1ab/nsp3295H295QH1113QnonsyncaCcaA1111050.9459463602-3604
ORF1ab/nsp3295H295QH1113QnonsyncaCcaG11160.05405413602-3604
ORF1ab/nsp3295H295NH1113NnonsynCacAac383813602-3604
ORF1ab/nsp3295H295DH1113DnonsynCacGac181813602-3604
ORF1ab/nsp3295H295LH1113LnonsyncAccTc4413602-3604
ORF1ab/nsp3295H295PH1113PnonsyncACcCT320.6666673602-3604
ORF1ab/nsp3295H295PH1113PnonsyncAccCc310.3333333602-3604
ORF1ab/nsp3295H295IH1113InonsynCACATT210.53602-3604
ORF1ab/nsp3295H295del2H1113del2delCAC--N210.53602-3604
ORF1ab/nsp3295H295IH1113InonsynCAcATc210.53602-3604
ORF1ab/nsp3295H295del2H1113del2delCAc--c210.53602-3604
ORF1ab/nsp3295H295CH1113CnonsynCAcTGc1113602-3604
ORF1ab/nsp3295H295TH1113TnonsynCACACA1113602-3604
ORF1ab/nsp3295H295EH1113EnonsynCaCGaG1113602-3604
ORF1ab/nsp3295H295del1H1113del1delcaCca-1113602-3604

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF1ab/nsp3295H295YCacTac2268122683All0.004338
ORF1ab/nsp3295H295YCaCTaT222683All0
ORF1ab/nsp3295H295YCacTac1295812959B.1.2210.920443
ORF1ab/nsp3295H295YCaCTaT112959B.1.2210.000071
ORF1ab/nsp3295H295YCacTac29152915B.1.1.70.00261
ORF1ab/nsp3295H295HcaCcaT16071607All0.000307
ORF1ab/nsp3295H295YCacTac11971197B.1.221.30.9975
ORF1ab/nsp3295H295YCacTac685685AY.1030.004253
ORF1ab/nsp3295H295YCacTac378378B.1.4970.11898
ORF1ab/nsp3295H295HcaCcaT363363B.1.1.70.000325
ORF1ab/nsp3295H295YCacTac346347AY.40.000539
ORF1ab/nsp3295H295YCaCTaT1347AY.40.000002
ORF1ab/nsp3295H295YCacTac344344B.1.221.11
ORF1ab/nsp3295H295YCacTac270270B.1.617.20.001017
ORF1ab/nsp3295H295HcaCcaT253253AY.40.000394
ORF1ab/nsp3295H295YCacTac247247B.1.221.20.991968
ORF1ab/nsp3295H295YCacTac238238B.1.221.40.991667
ORF1ab/nsp3295H295YCacTac213213AY.430.000944
ORF1ab/nsp3295H295RcAccGc206206All0.000039
ORF1ab/nsp3295H295YCacTac174174B.1.10.003157
ORF1ab/nsp3295H295HcaCcaT170170B.1.1.2720.885417
ORF1ab/nsp3295H295YCacTac164164B.10.001502
ORF1ab/nsp3295H295YCacTac134134B.1.20.00118
ORF1ab/nsp3295H295YCacTac118118B.1.2580.007853
ORF1ab/nsp3295H295delCAC---114114All0.000022
ORF1ab/nsp3295H295YCacTac112112B.1.1770.001475
ORF1ab/nsp3295H295YCacTac112112P.10.001764
ORF1ab/nsp3295H295QcaCcaA105111All0.00002
ORF1ab/nsp3295H295QcaCcaG6111All0.000001
ORF1ab/nsp3295H295YCacTac100100AY.30.000995
ORF1ab/nsp3295H295HcaCcaT9191B.1.177.70.015002
ORF1ab/nsp3295H295YCacTac8989AP.10.133634
ORF1ab/nsp3295H295HcaCcaT8282AY.1030.000509
ORF1ab/nsp3295H295YCacTac7575AY.440.000457
ORF1ab/nsp3295H295YCacTac7272B.1.4520.986301
ORF1ab/nsp3295H295YCacTac6868B.1.5260.001598
ORF1ab/nsp3295H295YCacTac6363B.1.5690.913043
ORF1ab/nsp3295H295HcaCcaT6262B.1.20.000546
ORF1ab/nsp3295H295YCacTac5858C.36.10.240664
ORF1ab/nsp3295H295RcAccGc5757B.1.1.70.000051
ORF1ab/nsp3295H295HcaCcaT5757B.1.617.20.000215
ORF1ab/nsp3295H295YCacTac5555AY.4.20.001193
ORF1ab/nsp3295H295YCacTac5555B.1.2650.069886
ORF1ab/nsp3295H295YCacTac5353AY.1190.001871
ORF1ab/nsp3295H295YCacTac5252AY.250.000313
ORF1ab/nsp3295H295YCacTac5252B.1.4290.001224
ORF1ab/nsp3295H295QcaCcaA5151AY.1200.001896
ORF1ab/nsp3295H295YCacTac4747AY.1020.001246
ORF1ab/nsp3295H295HcaCcaT4444B.1.1600.001372
ORF1ab/nsp3295H295HcaCcaT4040B.10.000366
ORF1ab/nsp3295H295YCacTac3939B.1.1600.001216
ORF1ab/nsp3295H295NCacAac3838All0.000007
ORF1ab/nsp3295H295HcaCcaT3737AY.250.000223
ORF1ab/nsp3295H295YCacTac3737R.10.00333
ORF1ab/nsp3295H295HcaCcaT3636B.1.1.5190.00143
ORF1ab/nsp3295H295YCacTac3434AY.1130.004841
ORF1ab/nsp3295H295YCacTac3434B.1.1.1621
ORF1ab/nsp3295H295YCacTac3434B.1.177.210.0026
ORF1ab/nsp3295H295YCacTac3333AY.390.000815
ORF1ab/nsp3295H295YCacTac3232B.1.4080.118081
ORF1ab/nsp3295H295RcAccGc3232B.1.617.20.00012
ORF1ab/nsp3295H295HcaCcaT3131B.1.5260.000729
ORF1ab/nsp3295H295YCacTac3030AY.7.20.016779
ORF1ab/nsp3295H295RcAccGc2929B.1.20.000255
ORF1ab/nsp3295H295YCacTac2828AY.90.001893
ORF1ab/nsp3295H295YCacTac2828B.1.1.5190.001112
ORF1ab/nsp3295H295YCacTac2828Q.40.012733
ORF1ab/nsp3295H295HcaCcaT2626AY.430.000115
ORF1ab/nsp3295H295YCacTac2626AY.740.003007
ORF1ab/nsp3295H295YCacTac2626B.1.3510.000773
ORF1ab/nsp3295H295RcAccGc2424AY.430.000106
ORF1ab/nsp3295H295YCacTac2424P.1.140.001147
ORF1ab/nsp3295H295YCacTac2323B.1.160.260.05569
ORF1ab/nsp3295H295HcaCcaT2323B.1.1770.000303
ORF1ab/nsp3295H295YCacTac2020AY.1100.002254
ORF1ab/nsp3295H295delCAC---2020P.1.150.004647
ORF1ab/nsp3295H295YCacTac1919AY.460.001978
ORF1ab/nsp3295H295HcaCcaT1919B.1.4290.000447
ORF1ab/nsp3295H295DCacGac1818All0.000003
ORF1ab/nsp3295H295YCacTac1818AY.290.000284
ORF1ab/nsp3295H295delCAC---1818P.10.000284
ORF1ab/nsp3295H295YCacTac1717AY.46.50.003373
ORF1ab/nsp3295H295YCacTac1717B.1.1.580.091398
ORF1ab/nsp3295H295YCacTac1717B.1.177.600.003713
ORF1ab/nsp3295H295YCacTac1616B.1.2100.034115
ORF1ab/nsp3295H295HcaCcaT1414AY.440.000085
ORF1ab/nsp3295H295HcaCcaT1414B.1.258.170.001456
ORF1ab/nsp3295H295YCacTac1414B.1.4270.000707
ORF1ab/nsp3295H295YCacTac1414B.1.5770.009622
ORF1ab/nsp3295H295YCacTac1313AY.1000.000598
ORF1ab/nsp3295H295YCacTac1313AY.200.000505
ORF1ab/nsp3295H295YCacTac1313AY.470.000404
ORF1ab/nsp3295H295DCacGac1313B.1.1.70.000012
ORF1ab/nsp3295H295NCacAac1313B.1.1.70.000012
ORF1ab/nsp3295H295YCacTac1313B.1.2400.002802
ORF1ab/nsp3295H295HcaCcaT1313B.1.36.290.006725
ORF1ab/nsp3295H295YCacTac1212AY.39.10.000475
ORF1ab/nsp3295H295YCacTac1111AY.1060.003684
ORF1ab/nsp3295H295HcaCcaT1111B.1.2340.001451
ORF1ab/nsp3295H295YCacTac1010AY.1180.000626
ORF1ab/nsp3295H295HcaCcaT1010AY.39.10.000396
ORF1ab/nsp3295H295YCacTac1010AY.420.000402
ORF1ab/nsp3295H295HcaCcaT1010B.1.10.000181
ORF1ab/nsp3295H295YCacTac1010B.1.1.4060.064935
ORF1ab/nsp3295H295delCAC---1010B.1.1.70.000009
ORF1ab/nsp3295H295YCacTac1010B.1.6210.000885
ORF1ab/nsp3295H295RcAccGc1010C.36.30.005672
ORF1ab/nsp3295H295delCAC---1010P.1.120.00484
ORF1ab/nsp3295H295HcaCcaT99AY.30.00009
ORF1ab/nsp3295H295YCacTac99AY.46.40.001481
ORF1ab/nsp3295H295QcaCcaA99AY.470.00028
ORF1ab/nsp3295H295delCAC---99B.10.000082
ORF1ab/nsp3295H295QcaCcaA79B.1.1.70.000006
ORF1ab/nsp3295H295QcaCcaG29B.1.1.70.000002
ORF1ab/nsp3295H295HcaCcaT99B.1.3510.000268
ORF1ab/nsp3295H295HcaCcaT99B.1.4000.003861
ORF1ab/nsp3295H295YCacTac99C.370.001045
ORF1ab/nsp3295H295HcaCcaT99P.1.100.002425
ORF1ab/nsp3295H295YCacTac88AY.260.000226
ORF1ab/nsp3295H295HcaCcaT88AY.4.20.000174
ORF1ab/nsp3295H295YCacTac88AY.60.000329
ORF1ab/nsp3295H295YCacTac88B.1.177.120.001214
ORF1ab/nsp3295H295YCacTac88B.1.177.430.011817
ORF1ab/nsp3295H295YCacTac77AY.1170.000592
ORF1ab/nsp3295H295HcaCcaT77AY.1190.000247
ORF1ab/nsp3295H295YCacTac77AY.1200.00026
ORF1ab/nsp3295H295YCacTac77AY.230.000488
ORF1ab/nsp3295H295YCacTac77AY.270.000453
ORF1ab/nsp3295H295YCacTac77AY.330.000467
ORF1ab/nsp3295H295HcaCcaT77AY.4.2.10.001043
ORF1ab/nsp3295H295YCacTac77B.1.1.390.003568
ORF1ab/nsp3295H295YCacTac77B.1.160.320.030043
ORF1ab/nsp3295H295YCacTac77B.1.2800.05
ORF1ab/nsp3295H295YCacTac77B.1.36.10.007982
ORF1ab/nsp3295H295YCacTac77D.20.000525
ORF1ab/nsp3295H295HcaCcaT66AY.120.001896
ORF1ab/nsp3295H295YCacTac66AY.410.001764
ORF1ab/nsp3295H295HcaCcaT66AY.540.000572
ORF1ab/nsp3295H295YCacTac66AY.7.10.000676
ORF1ab/nsp3295H295HcaCcaT66AY.740.000694
ORF1ab/nsp3295H295YCacTac66AY.980.000474
ORF1ab/nsp3295H295YCacTac66B.1.1.2140.000333
ORF1ab/nsp3295H295YCacTac66B.1.1.4480.012195
ORF1ab/nsp3295H295YCacTac66B.1.1700.025862
ORF1ab/nsp3295H295YCacTac66B.1.177.510.027397
ORF1ab/nsp3295H295YCacTac66B.1.2430.000418
ORF1ab/nsp3295H295YCacTac66C.360.005464
ORF1ab/nsp3295H295YCacTac55AY.140.00044
ORF1ab/nsp3295H295YCacTac55AY.340.000485
ORF1ab/nsp3295H295RcAccGc55AY.390.000124
ORF1ab/nsp3295H295RcAccGc55AY.46.60.000361
ORF1ab/nsp3295H295YCacTac55AY.530.001438
ORF1ab/nsp3295H295YCacTac55AY.9.20.000184
ORF1ab/nsp3295H295YCacTac55AY.98.10.000242
ORF1ab/nsp3295H295YCacTac55B.1.2340.00066
ORF1ab/nsp3295H295YCacTac55B.1.3490.003574
ORF1ab/nsp3295H295YCacTac55B.1.3690.001426
ORF1ab/nsp3295H295HcaCcaT55B.1.4270.000252
ORF1ab/nsp3295H295YCacTac55B.1.5250.000566
ORF1ab/nsp3295H295LcAccTc44All0.000001
ORF1ab/nsp3295H295RcAccGc44AY.1030.000025
ORF1ab/nsp3295H295QcaCcaA44AY.1210.000541
ORF1ab/nsp3295H295NCacAac44AY.250.000024
ORF1ab/nsp3295H295HcaCcaT44AY.290.000063
ORF1ab/nsp3295H295DCacGac44AY.30.00004
ORF1ab/nsp3295H295YCacTac44AY.320.00213
ORF1ab/nsp3295H295NCacAac44AY.440.000024
ORF1ab/nsp3295H295YCacTac44AY.450.000487
ORF1ab/nsp3295H295YCacTac44AY.540.000381
ORF1ab/nsp3295H295YCacTac44AY.750.000224
ORF1ab/nsp3295H295YCacTac44AY.75.10.000721
ORF1ab/nsp3295H295YCacTac44AY.850.001709
ORF1ab/nsp3295H295YCacTac44AY.9.10.000335
ORF1ab/nsp3295H295YCacTac44B0.000511
ORF1ab/nsp3295H295delCAC---44B.1.10.000073
ORF1ab/nsp3295H295YCacTac44B.1.177.70.000659
ORF1ab/nsp3295H295YCacTac44B.1.177.730.002265
ORF1ab/nsp3295H295RcAccGc44B.1.360.000584
ORF1ab/nsp3295H295YCacTac44B.1.36.170.001976
ORF1ab/nsp3295H295YCacTac44B.1.36.310.007005
ORF1ab/nsp3295H295YCacTac44B.1.5950.001044
ORF1ab/nsp3295H295YCacTac44B.1.617.10.000516
ORF1ab/nsp3295H295QcaCcaA44B.1.617.20.000015
ORF1ab/nsp3295H295delCAC---44B.1.6210.000354
ORF1ab/nsp3295H295YCacTac44B.520.040404
ORF1ab/nsp3295H295QcaCcaA44P.1.140.000191
ORF1ab/nsp3295H295YCacTac44P.20.000747
ORF1ab/nsp3295H295RcAccGc33A0.001161
ORF1ab/nsp3295H295YCacTac33A.2.5.20.004717
ORF1ab/nsp3295H295YCacTac33A.210.00831
ORF1ab/nsp3295H295PcACcCT23All0
ORF1ab/nsp3295H295PcAccCc13All0
ORF1ab/nsp3295H295YCacTac33AY.3.10.000256
ORF1ab/nsp3295H295YCacTac33AY.380.001498
ORF1ab/nsp3295H295NCacAac33AY.39.10.000119
ORF1ab/nsp3295H295QcaCcaA33AY.40.000005
ORF1ab/nsp3295H295RcAccGc33AY.40.000005
ORF1ab/nsp3295H295HcaCcaT33AY.50.000062
ORF1ab/nsp3295H295YCacTac33AY.50.000062
ORF1ab/nsp3295H295YCacTac33AY.520.002443
ORF1ab/nsp3295H295RcAccGc33AY.610.000314
ORF1ab/nsp3295H295YCacTac33AY.690.00056
ORF1ab/nsp3295H295HcaCcaT33AY.690.00056
ORF1ab/nsp3295H295YCacTac33AY.930.000819
ORF1ab/nsp3295H295RcAccGc33B.10.000027
ORF1ab/nsp3295H295HcaCcaT33B.1.1.1170.029126
ORF1ab/nsp3295H295YCacTac33B.1.1.2220.000612
ORF1ab/nsp3295H295YCacTac33B.1.1.3720.002066
ORF1ab/nsp3295H295NCacAac33B.1.1.3970.006757
ORF1ab/nsp3295H295YCacTac33B.1.1.700.001023
ORF1ab/nsp3295H295YCacTac33B.1.1050.028846
ORF1ab/nsp3295H295HcaCcaT33B.1.177.770.002179
ORF1ab/nsp3295H295YCacTac33B.1.2180.015464
ORF1ab/nsp3295H295YCacTac33B.1.2410.002435
ORF1ab/nsp3295H295YCacTac33B.1.3140.022556
ORF1ab/nsp3295H295QcaCcaA33B.1.3510.000089
ORF1ab/nsp3295H295HcaCcaT33B.1.360.000438
ORF1ab/nsp3295H295YCacTac33B.1.360.000438
ORF1ab/nsp3295H295YCacTac33B.1.36.290.001552
ORF1ab/nsp3295H295YCacTac33B.1.5680.003333
ORF1ab/nsp3295H295YCacTac33B.1.5970.013889
ORF1ab/nsp3295H295YCacTac33B.1.6090.001438
ORF1ab/nsp3295H295HcaCcaT33B.1.6210.000266
ORF1ab/nsp3295H295YCacTac33C.350.002322
ORF1ab/nsp3295H295HcaCcaT33C.370.000348
ORF1ab/nsp3295H295delCAC---33C.370.000348
ORF1ab/nsp3295H295HcaCcaT33P.10.000047
ORF1ab/nsp3295H295delCAC---33P.1.140.000143
ORF1ab/nsp3295H295YCacTac33P.1.150.000697
ORF1ab/nsp3295H295RcAccGc33Q.30.000435
ORF1ab/nsp3295H295YCacTac33Q.80.000495
ORF1ab/nsp3295H295YCacTac220.111111
ORF1ab/nsp3295H295PcACcCT220.111111
ORF1ab/nsp3295H295delCAC---220.111111
ORF1ab/nsp3295H295YCacTac22A0.000774
ORF1ab/nsp3295H295HcaCcaT22A0.000774
ORF1ab/nsp3295H295HcaCcaT22A.2.50.000998
ORF1ab/nsp3295H295YCacTac22AD.20.000438
ORF1ab/nsp3295H295YCacTac22AL.10.025974
ORF1ab/nsp3295H295del2CAc--c12All0
ORF1ab/nsp3295H295ICACATT12All0
ORF1ab/nsp3295H295ICAcATc12All0
ORF1ab/nsp3295H295del2CAC--N12All0
ORF1ab/nsp3295H295YCacTac22AY.10.000791
ORF1ab/nsp3295H295delCAC---22AY.1000.000092
ORF1ab/nsp3295H295NCacAac22AY.1010.000981
ORF1ab/nsp3295H295HcaCcaT22AY.1020.000053
ORF1ab/nsp3295H295YCacTac22AY.1160.000574
ORF1ab/nsp3295H295HcaCcaT22AY.1200.000074
ORF1ab/nsp3295H295HcaCcaT22AY.200.000078
ORF1ab/nsp3295H295HcaCcaT22AY.230.000139
ORF1ab/nsp3295H295HcaCcaT22AY.260.000057
ORF1ab/nsp3295H295HcaCcaT22AY.270.000129
ORF1ab/nsp3295H295QcaCcaA22AY.30.00002
ORF1ab/nsp3295H295YCacTac22AY.310.037037
ORF1ab/nsp3295H295HcaCcaT22AY.34.10.00102
ORF1ab/nsp3295H295YCacTac22AY.360.000296
ORF1ab/nsp3295H295HcaCcaT22AY.360.000296
ORF1ab/nsp3295H295YCacTac22AY.370.000632
ORF1ab/nsp3295H295YCacTac22AY.39.20.003082
ORF1ab/nsp3295H295RcAccGc22AY.4.20.000043
ORF1ab/nsp3295H295QcaCcaA22AY.430.000009
ORF1ab/nsp3295H295HcaCcaT22AY.450.000243
ORF1ab/nsp3295H295HcaCcaT22AY.46.60.000144
ORF1ab/nsp3295H295YCacTac22AY.46.60.000144
ORF1ab/nsp3295H295YCacTac22AY.480.00093
ORF1ab/nsp3295H295HcaCcaT22AY.80.001212
ORF1ab/nsp3295H295YCacTac22AY.820.002714
ORF1ab/nsp3295H295YCacTac22AY.99.20.000184
ORF1ab/nsp3295H295QcaCcaG12B.1.10.000018
ORF1ab/nsp3295H295QcaCcaA12B.1.10.000018
ORF1ab/nsp3295H295RcAccGc22B.1.1.2220.000408
ORF1ab/nsp3295H295YCacTac22B.1.1.250.001137
ORF1ab/nsp3295H295HcaCcaT22B.1.1.2970.004474
ORF1ab/nsp3295H295YCacTac22B.1.1.3060.000877
ORF1ab/nsp3295H295YCacTac22B.1.1.3160.00185
ORF1ab/nsp3295H295YCacTac22B.1.1.3170.000823
ORF1ab/nsp3295H295HcaCcaT22B.1.1.3390.021053
ORF1ab/nsp3295H295YCacTac22B.1.177.310.022989
ORF1ab/nsp3295H295YCacTac22B.1.177.350.001382
ORF1ab/nsp3295H295HcaCcaT22B.1.177.40.000422
ORF1ab/nsp3295H295YCacTac22B.1.177.810.000379
ORF1ab/nsp3295H295YCacTac22B.1.177.860.000367
ORF1ab/nsp3295H295YCacTac22B.1.2320.001075
ORF1ab/nsp3295H295HcaCcaT22B.1.2390.002442
ORF1ab/nsp3295H295HcaCcaT22B.1.30.005236
ORF1ab/nsp3295H295YCacTac22B.1.36.80.002
ORF1ab/nsp3295H295YCacTac22B.1.3960.001411
ORF1ab/nsp3295H295YCacTac22B.1.438.10.000215
ORF1ab/nsp3295H295YCacTac22B.1.4590.008163
ORF1ab/nsp3295H295YCacTac22B.1.5170.000854
ORF1ab/nsp3295H295HcaCcaT22B.1.5760.001813
ORF1ab/nsp3295H295YCacTac22B.1.5960.000174
ORF1ab/nsp3295H295YCacTac22B.1.5990.007299
ORF1ab/nsp3295H295YCacTac22B.1.6320.013423
ORF1ab/nsp3295H295YCacTac22B.400.000729
ORF1ab/nsp3295H295YCacTac22C.140.008658
ORF1ab/nsp3295H295YCacTac22C.36.30.001134
ORF1ab/nsp3295H295HcaCcaT22D.20.00015
ORF1ab/nsp3295H295delCAC---22N.60.014184
ORF1ab/nsp3295H295YCacTac22N.90.011905
ORF1ab/nsp3295H295QcaCcaA22P.10.000032
ORF1ab/nsp3295H295HcaCcaT22P.1.140.000096
ORF1ab/nsp3295H295HcaCcaT22P.1.170.000324
ORF1ab/nsp3295H295delCAC---22P.1.70.000639
ORF1ab/nsp3295H295YCacTac22Q.10.000253
ORF1ab/nsp3295H295YCacTac22S.10.009901
ORF1ab/nsp3295H295HcaCcaT11A.2.5.30.010309
ORF1ab/nsp3295H295YCacTac11A.23.10.000704
ORF1ab/nsp3295H295HcaCcaT11A.270.001656
ORF1ab/nsp3295H295YCacTac11A.30.002096
ORF1ab/nsp3295H295TCACACA11All0
ORF1ab/nsp3295H295ECaCGaG11All0
ORF1ab/nsp3295H295CCAcTGc11All0
ORF1ab/nsp3295H295del1caCca-11All0
ORF1ab/nsp3295H295HcaCcaT11AY.1000.000046
ORF1ab/nsp3295H295RcAccGc11AY.1020.000027
ORF1ab/nsp3295H295QcaCcaA11AY.1030.000006
ORF1ab/nsp3295H295HcaCcaT11AY.1070.000466
ORF1ab/nsp3295H295QcaCcaA11AY.1080.001103
ORF1ab/nsp3295H295HcaCcaT11AY.1100.000113
ORF1ab/nsp3295H295HcaCcaT11AY.1130.000142
ORF1ab/nsp3295H295YCacTac11AY.120.000316
ORF1ab/nsp3295H295RcAccGc11AY.120.000316
ORF1ab/nsp3295H295QcaCcaA11AY.120.20.001285
ORF1ab/nsp3295H295HcaCcaT11AY.1210.000135
ORF1ab/nsp3295H295YCacTac11AY.1210.000135
ORF1ab/nsp3295H295YCacTac11AY.130.000161
ORF1ab/nsp3295H295YCacTac11AY.160.00038
ORF1ab/nsp3295H295YCacTac11AY.190.00114
ORF1ab/nsp3295H295delCAC---11AY.230.00007
ORF1ab/nsp3295H295YCacTac11AY.23.10.000417
ORF1ab/nsp3295H295delCAC---11AY.240.000431
ORF1ab/nsp3295H295RcAccGc11AY.250.000006
ORF1ab/nsp3295H295delCAC---11AY.250.000006
ORF1ab/nsp3295H295QcaCcaA11AY.250.000006
ORF1ab/nsp3295H295delCAC---11AY.260.000028
ORF1ab/nsp3295H295QcaCcaA11AY.270.000065
ORF1ab/nsp3295H295HcaCcaT11AY.3.10.000085
ORF1ab/nsp3295H295LcAccTc11AY.3.10.000085
ORF1ab/nsp3295H295YCacTac11AY.34.10.00051
ORF1ab/nsp3295H295YCacTac11AY.350.000233
ORF1ab/nsp3295H295HcaCcaT11AY.390.000025
ORF1ab/nsp3295H295NCacAac11AY.40.000002
ORF1ab/nsp3295H295YCacTac11AY.4.2.10.000149
ORF1ab/nsp3295H295YCacTac11AY.4.50.000107
ORF1ab/nsp3295H295HcaCcaT11AY.420.00004
ORF1ab/nsp3295H295delCAC---11AY.430.000004
ORF1ab/nsp3295H295delCAC---11AY.450.000122
ORF1ab/nsp3295H295HcaCcaT11AY.460.000104
ORF1ab/nsp3295H295YCacTac11AY.46.10.001027
ORF1ab/nsp3295H295QcaCcaA11AY.46.60.000072
ORF1ab/nsp3295H295HcaCcaT11AY.470.000031
ORF1ab/nsp3295H295YCacTac11AY.550.000917
ORF1ab/nsp3295H295YCacTac11AY.590.00053
ORF1ab/nsp3295H295RcAccGc11AY.60.000041
ORF1ab/nsp3295H295QcaCcaA11AY.60.000041
ORF1ab/nsp3295H295YCacTac11AY.610.000105
ORF1ab/nsp3295H295HcaCcaT11AY.610.000105
ORF1ab/nsp3295H295del1caCca-11AY.670.000464
ORF1ab/nsp3295H295delCAC---11AY.680.000274
ORF1ab/nsp3295H295YCacTac11AY.680.000274
ORF1ab/nsp3295H295HcaCcaT11AY.70.000196
ORF1ab/nsp3295H295YCacTac11AY.710.000475
ORF1ab/nsp3295H295YCacTac11AY.720.001361
ORF1ab/nsp3295H295LcAccTc11AY.770.001127
ORF1ab/nsp3295H295YCacTac11AY.800.001129
ORF1ab/nsp3295H295TCACACA11AY.840.000437
ORF1ab/nsp3295H295ECaCGaG11AY.850.000427
ORF1ab/nsp3295H295HcaCcaT11AY.860.00083
ORF1ab/nsp3295H295YCacTac11AY.880.000884
ORF1ab/nsp3295H295RcAccGc11AY.9.20.000037
ORF1ab/nsp3295H295HcaCcaT11AY.9.20.000037
ORF1ab/nsp3295H295RcAccGc11AY.920.000287
ORF1ab/nsp3295H295YCacTac11AY.940.000443
ORF1ab/nsp3295H295YCacTac11AY.950.000761
ORF1ab/nsp3295H295QcaCcaA11AY.980.000079
ORF1ab/nsp3295H295delCAC---11AY.990.001049
ORF1ab/nsp3295H295HcaCcaT11B0.000128
ORF1ab/nsp3295H295NCacAac11B.10.000009
ORF1ab/nsp3295H295ICAcATc11B.1.10.000018
ORF1ab/nsp3295H295YCacTac11B.1.1.100.001115
ORF1ab/nsp3295H295YCacTac11B.1.1.1410.002012
ORF1ab/nsp3295H295NCacAac11B.1.1.1530.001095
ORF1ab/nsp3295H295YCacTac11B.1.1.1890.001513
ORF1ab/nsp3295H295YCacTac11B.1.1.2000.007463
ORF1ab/nsp3295H295RcAccGc11B.1.1.2140.000055
ORF1ab/nsp3295H295RcAccGc11B.1.1.2160.00089
ORF1ab/nsp3295H295YCacTac11B.1.1.2200.001859
ORF1ab/nsp3295H295HcaCcaT11B.1.1.2200.001859
ORF1ab/nsp3295H295HcaCcaT11B.1.1.2220.000204
ORF1ab/nsp3295H295YCacTac11B.1.1.2430.004082
ORF1ab/nsp3295H295YCacTac11B.1.1.2690.001353
ORF1ab/nsp3295H295YCacTac11B.1.1.2770.000759
ORF1ab/nsp3295H295YCacTac11B.1.1.280.000311
ORF1ab/nsp3295H295HcaCcaT11B.1.1.2940.001266
ORF1ab/nsp3295H295YCacTac11B.1.1.3020.002075
ORF1ab/nsp3295H295delCAC---11B.1.1.3060.000438
ORF1ab/nsp3295H295HcaCcaT11B.1.1.3060.000438
ORF1ab/nsp3295H295RcAccGc11B.1.1.3150.008475
ORF1ab/nsp3295H295YCacTac11B.1.1.3260.001761
ORF1ab/nsp3295H295YCacTac11B.1.1.330.000421
ORF1ab/nsp3295H295delCAC---11B.1.1.330.000421
ORF1ab/nsp3295H295delCAC---11B.1.1.3480.000796
ORF1ab/nsp3295H295YCacTac11B.1.1.3510.002793
ORF1ab/nsp3295H295YCacTac11B.1.1.3700.012658
ORF1ab/nsp3295H295YCacTac11B.1.1.3740.002375
ORF1ab/nsp3295H295YCacTac11B.1.1.3890.006061
ORF1ab/nsp3295H295YCacTac11B.1.1.3910.008547
ORF1ab/nsp3295H295YCacTac11B.1.1.4130.006897
ORF1ab/nsp3295H295RcAccGc11B.1.1.4190.007407
ORF1ab/nsp3295H295HcaCcaT11B.1.1.470.005348
ORF1ab/nsp3295H295YCacTac11B.1.1.480.002874
ORF1ab/nsp3295H295HcaCcaT11B.1.1.4820.023256
ORF1ab/nsp3295H295YCacTac11B.1.1.500.000679
ORF1ab/nsp3295H295NCacAac11B.1.1.5190.00004
ORF1ab/nsp3295H295YCacTac11B.1.1.540.003021
ORF1ab/nsp3295H295RcAccGc11B.1.1.540.003021
ORF1ab/nsp3295H295YCacTac11B.1.1.630.000386
ORF1ab/nsp3295H295del2CAC--N11B.1.1.70.000001
ORF1ab/nsp3295H295ICACATT11B.1.1.70.000001
ORF1ab/nsp3295H295YCacTac11B.1.1040.00369
ORF1ab/nsp3295H295YCacTac11B.1.110.30.000718
ORF1ab/nsp3295H295YCacTac11B.1.1280.000635
ORF1ab/nsp3295H295YCacTac11B.1.1390.000733
ORF1ab/nsp3295H295QcaCcaA11B.1.1600.000031
ORF1ab/nsp3295H295LcAccTc11B.1.160.320.004292
ORF1ab/nsp3295H295QcaCcaG11B.1.1770.000013
ORF1ab/nsp3295H295delCAC---11B.1.1770.000013
ORF1ab/nsp3295H295HcaCcaT11B.1.177.210.000076
ORF1ab/nsp3295H295RcAccGc11B.1.177.230.003236
ORF1ab/nsp3295H295YCacTac11B.1.177.440.000519
ORF1ab/nsp3295H295QcaCcaG11B.1.177.460.000918
ORF1ab/nsp3295H295HcaCcaT11B.1.177.540.000606
ORF1ab/nsp3295H295YCacTac11B.1.177.60.000977
ORF1ab/nsp3295H295YCacTac11B.1.177.620.001192
ORF1ab/nsp3295H295PcAccCc11B.1.177.730.000566
ORF1ab/nsp3295H295HcaCcaT11B.1.177.760.002494
ORF1ab/nsp3295H295YCacTac11B.1.177.80.000752
ORF1ab/nsp3295H295YCacTac11B.1.177.840.006667
ORF1ab/nsp3295H295HcaCcaT11B.1.177.860.000183
ORF1ab/nsp3295H295YCacTac11B.1.177.870.000728
ORF1ab/nsp3295H295NCacAac11B.1.20.000009
ORF1ab/nsp3295H295delCAC---11B.1.20.000009
ORF1ab/nsp3295H295delCAC---11B.1.2180.005155
ORF1ab/nsp3295H295YCacTac11B.1.220.001318
ORF1ab/nsp3295H295HcaCcaT11B.1.2230.002778
ORF1ab/nsp3295H295HcaCcaT11B.1.2320.000537
ORF1ab/nsp3295H295delCAC---11B.1.2430.00007
ORF1ab/nsp3295H295YCacTac11B.1.258.110.000396
ORF1ab/nsp3295H295YCacTac11B.1.258.170.000104
ORF1ab/nsp3295H295YCacTac11B.1.258.50.008772
ORF1ab/nsp3295H295HcaCcaT11B.1.2600.003344
ORF1ab/nsp3295H295HcaCcaT11B.1.2840.013158
ORF1ab/nsp3295H295QcaCcaG11B.1.2840.013158
ORF1ab/nsp3295H295HcaCcaT11B.1.3010.005917
ORF1ab/nsp3295H295YCacTac11B.1.3110.000275
ORF1ab/nsp3295H295YCacTac11B.1.3360.002439
ORF1ab/nsp3295H295DCacGac11B.1.3510.00003
ORF1ab/nsp3295H295NCacAac11B.1.3510.00003
ORF1ab/nsp3295H295delCAC---11B.1.360.000146
ORF1ab/nsp3295H295HcaCcaT11B.1.36.380.001642
ORF1ab/nsp3295H295YCacTac11B.1.36.70.004
ORF1ab/nsp3295H295YCacTac11B.1.3620.001541
ORF1ab/nsp3295H295HcaCcaT11B.1.3620.001541
ORF1ab/nsp3295H295YCacTac11B.1.3710.001122
ORF1ab/nsp3295H295YCacTac11B.1.3820.008929
ORF1ab/nsp3295H295QcaCcaA11B.1.3890.001002
ORF1ab/nsp3295H295YCacTac11B.1.4000.000429
ORF1ab/nsp3295H295YCacTac11B.1.4020.009804
ORF1ab/nsp3295H295delCAC---11B.1.4160.001269
ORF1ab/nsp3295H295YCacTac11B.1.416.10.001563
ORF1ab/nsp3295H295QcaCcaA11B.1.4270.00005
ORF1ab/nsp3295H295YCacTac11B.1.4280.00102
ORF1ab/nsp3295H295QcaCcaA11B.1.4290.000024
ORF1ab/nsp3295H295delCAC---11B.1.4290.000024
ORF1ab/nsp3295H295YCacTac11B.1.4360.001029
ORF1ab/nsp3295H295YCacTac11B.1.4450.011765
ORF1ab/nsp3295H295HcaCcaT11B.1.466.20.000391
ORF1ab/nsp3295H295YCacTac11B.1.4700.001404
ORF1ab/nsp3295H295HcaCcaT11B.1.4800.002488
ORF1ab/nsp3295H295HcaCcaT11B.1.4990.00105
ORF1ab/nsp3295H295delCAC---11B.1.5170.000427
ORF1ab/nsp3295H295RcAccGc11B.1.5260.000024
ORF1ab/nsp3295H295YCacTac11B.1.5510.00129
ORF1ab/nsp3295H295YCacTac11B.1.5610.000397
ORF1ab/nsp3295H295YCacTac11B.1.5670.003333
ORF1ab/nsp3295H295YCacTac11B.1.5740.002151
ORF1ab/nsp3295H295HcaCcaT11B.1.5800.004065
ORF1ab/nsp3295H295HcaCcaT11B.1.5810.009434
ORF1ab/nsp3295H295HcaCcaT11B.1.5960.000087
ORF1ab/nsp3295H295delCAC---11B.1.5960.000087
ORF1ab/nsp3295H295HcaCcaT11B.1.6120.002653
ORF1ab/nsp3295H295HcaCcaT11B.1.617.10.000129
ORF1ab/nsp3295H295NCacAac11B.1.617.20.000004
ORF1ab/nsp3295H295CCAcTGc11B.1.617.20.000004
ORF1ab/nsp3295H295LcAccTc11B.1.617.20.000004
ORF1ab/nsp3295H295YCacTac11B.1.619.10.000641
ORF1ab/nsp3295H295delCAC---11B.1.6270.00202
ORF1ab/nsp3295H295RcAccGc11B.100.008264
ORF1ab/nsp3295H295YCacTac11B.3.10.001658
ORF1ab/nsp3295H295QcaCcaA11B.390.002331
ORF1ab/nsp3295H295HcaCcaT11B.60.00091
ORF1ab/nsp3295H295YCacTac11C.300.001727
ORF1ab/nsp3295H295HcaCcaT11C.360.000911
ORF1ab/nsp3295H295RcAccGc11C.360.000911
ORF1ab/nsp3295H295YCacTac11C.37.10.002618
ORF1ab/nsp3295H295YCacTac11C.40.01
ORF1ab/nsp3295H295NCacAac11P.10.000016
ORF1ab/nsp3295H295del2CAc--c11P.10.000016
ORF1ab/nsp3295H295RcAccGc11P.10.000016
ORF1ab/nsp3295H295delCAC---11P.1.10.000318
ORF1ab/nsp3295H295delCAC---11P.1.100.000269
ORF1ab/nsp3295H295YCacTac11P.1.120.000484
ORF1ab/nsp3295H295delCAC---11P.1.130.000898
ORF1ab/nsp3295H295HcaCcaT11P.1.150.000232
ORF1ab/nsp3295H295YCacTac11P.1.17.10.000875
ORF1ab/nsp3295H295delCAC---11P.1.20.001156
ORF1ab/nsp3295H295YCacTac11P.1.40.000977
ORF1ab/nsp3295H295YCacTac11P.1.60.001946
ORF1ab/nsp3295H295YCacTac11P.1.70.000319
ORF1ab/nsp3295H295HcaCcaT11P.30.001595
ORF1ab/nsp3295H295YCacTac11Q.30.000145
ORF1ab/nsp3295H295HcaCcaT11Q.80.000165
ORF1ab/nsp3295H295NCacAac11Q.80.000165
ORF1ab/nsp3295H295HcaCcaT11R.10.00009
ORF1ab/nsp3295H295YCacTac11W.10.008696
ORF1ab/nsp3295H295RcAccGc11Z.10.00289