CoV-GLUEGenomeCountriesLineagesMutationsInsertionsDeletionsUpdated:

CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF1ab/nsp3 : CodonNum = 295

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF1ab/nsp3295H295YH1113YnonsynCacTac22683226810.9999123602-3604
ORF1ab/nsp3295H295YH1113YnonsynCaCTaT2268320.00008817183602-3604
ORF1ab/nsp3295H295HH1113HsyncaCcaT1607160713602-3604
ORF1ab/nsp3295H295RH1113RnonsyncAccGc20620613602-3604
ORF1ab/nsp3295H295delH1113deldelCAC---11411413602-3604
ORF1ab/nsp3295H295QH1113QnonsyncaCcaA1111050.9459463602-3604
ORF1ab/nsp3295H295QH1113QnonsyncaCcaG11160.05405413602-3604
ORF1ab/nsp3295H295NH1113NnonsynCacAac383813602-3604
ORF1ab/nsp3295H295DH1113DnonsynCacGac181813602-3604
ORF1ab/nsp3295H295LH1113LnonsyncAccTc4413602-3604
ORF1ab/nsp3295H295PH1113PnonsyncACcCT320.6666673602-3604
ORF1ab/nsp3295H295PH1113PnonsyncAccCc310.3333333602-3604
ORF1ab/nsp3295H295IH1113InonsynCACATT210.53602-3604
ORF1ab/nsp3295H295del2H1113del2delCAC--N210.53602-3604
ORF1ab/nsp3295H295IH1113InonsynCAcATc210.53602-3604
ORF1ab/nsp3295H295del2H1113del2delCAc--c210.53602-3604
ORF1ab/nsp3295H295CH1113CnonsynCAcTGc1113602-3604
ORF1ab/nsp3295H295TH1113TnonsynCACACA1113602-3604
ORF1ab/nsp3295H295EH1113EnonsynCaCGaG1113602-3604
ORF1ab/nsp3295H295del1H1113del1delcaCca-1113602-3604

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF1ab/nsp3295H295YCacTac2268122683All0.004338
ORF1ab/nsp3295H295YCaCTaT222683All0
ORF1ab/nsp3295H295YCacTac1295812959B.1.2210.920443
ORF1ab/nsp3295H295YCaCTaT112959B.1.2210.000071
ORF1ab/nsp3295H295YCacTac29152915B.1.1.70.00261
ORF1ab/nsp3295H295HcaCcaT16071607All0.000307
ORF1ab/nsp3295H295YCacTac11971197B.1.221.30.9975
ORF1ab/nsp3295H295YCacTac685685AY.1030.004253
ORF1ab/nsp3295H295YCacTac378378B.1.4970.11898
ORF1ab/nsp3295H295HcaCcaT363363B.1.1.70.000325
ORF1ab/nsp3295H295YCacTac346347AY.40.000539
ORF1ab/nsp3295H295YCaCTaT1347AY.40.000002
ORF1ab/nsp3295H295YCacTac344344B.1.221.11
ORF1ab/nsp3295H295YCacTac270270B.1.617.20.001017
ORF1ab/nsp3295H295HcaCcaT253253AY.40.000394
ORF1ab/nsp3295H295YCacTac247247B.1.221.20.991968
ORF1ab/nsp3295H295YCacTac238238B.1.221.40.991667
ORF1ab/nsp3295H295YCacTac213213AY.430.000944
ORF1ab/nsp3295H295RcAccGc206206All0.000039
ORF1ab/nsp3295H295YCacTac174174B.1.10.003157
ORF1ab/nsp3295H295HcaCcaT170170B.1.1.2720.885417
ORF1ab/nsp3295H295YCacTac164164B.10.001502
ORF1ab/nsp3295H295YCacTac134134B.1.20.00118
ORF1ab/nsp3295H295YCacTac118118B.1.2580.007853
ORF1ab/nsp3295H295delCAC---114114All0.000022
ORF1ab/nsp3295H295YCacTac112112B.1.1770.001475
ORF1ab/nsp3295H295YCacTac112112P.10.001764
ORF1ab/nsp3295H295QcaCcaA105111All0.00002
ORF1ab/nsp3295H295QcaCcaG6111All0.000001
ORF1ab/nsp3295H295YCacTac100100AY.30.000995
ORF1ab/nsp3295H295HcaCcaT9191B.1.177.70.015002
ORF1ab/nsp3295H295YCacTac8989AP.10.133634
ORF1ab/nsp3295H295HcaCcaT8282AY.1030.000509
ORF1ab/nsp3295H295YCacTac7575AY.440.000457
ORF1ab/nsp3295H295YCacTac7272B.1.4520.986301
ORF1ab/nsp3295H295YCacTac6868B.1.5260.001598
ORF1ab/nsp3295H295YCacTac6363B.1.5690.913043
ORF1ab/nsp3295H295HcaCcaT6262B.1.20.000546
ORF1ab/nsp3295H295YCacTac5858C.36.10.240664
ORF1ab/nsp3295H295RcAccGc5757B.1.1.70.000051
ORF1ab/nsp3295H295HcaCcaT5757B.1.617.20.000215
ORF1ab/nsp3295H295YCacTac5555AY.4.20.001193
ORF1ab/nsp3295H295YCacTac5555B.1.2650.069886
ORF1ab/nsp3295H295YCacTac5353AY.1190.001871
ORF1ab/nsp3295H295YCacTac5252AY.250.000313
ORF1ab/nsp3295H295YCacTac5252B.1.4290.001224
ORF1ab/nsp3295H295QcaCcaA5151AY.1200.001896
ORF1ab/nsp3295H295YCacTac4747AY.1020.001246
ORF1ab/nsp3295H295HcaCcaT4444B.1.1600.001372
ORF1ab/nsp3295H295HcaCcaT4040B.10.000366
ORF1ab/nsp3295H295YCacTac3939B.1.1600.001216
ORF1ab/nsp3295H295NCacAac3838All0.000007
ORF1ab/nsp3295H295HcaCcaT3737AY.250.000223
ORF1ab/nsp3295H295YCacTac3737R.10.00333
ORF1ab/nsp3295H295HcaCcaT3636B.1.1.5190.00143
ORF1ab/nsp3295H295YCacTac3434AY.1130.004841
ORF1ab/nsp3295H295YCacTac3434B.1.1.1621
ORF1ab/nsp3295H295YCacTac3434B.1.177.210.0026
ORF1ab/nsp3295H295YCacTac3333AY.390.000815
ORF1ab/nsp3295H295YCacTac3232B.1.4080.118081
ORF1ab/nsp3295H295RcAccGc3232B.1.617.20.00012
ORF1ab/nsp3295H295HcaCcaT3131B.1.5260.000729
ORF1ab/nsp3295H295YCacTac3030AY.7.20.016779
ORF1ab/nsp3295H295RcAccGc2929B.1.20.000255
ORF1ab/nsp3295H295YCacTac2828AY.90.001893
ORF1ab/nsp3295H295YCacTac2828B.1.1.5190.001112
ORF1ab/nsp3295H295YCacTac2828Q.40.012733
ORF1ab/nsp3295H295HcaCcaT2626AY.430.000115
ORF1ab/nsp3295H295YCacTac2626AY.740.003007
ORF1ab/nsp3295H295YCacTac2626B.1.3510.000773
ORF1ab/nsp3295H295RcAccGc2424AY.430.000106
ORF1ab/nsp3295H295YCacTac2424P.1.140.001147
ORF1ab/nsp3295H295YCacTac2323B.1.160.260.05569
ORF1ab/nsp3295H295HcaCcaT2323B.1.1770.000303
ORF1ab/nsp3295H295YCacTac2020AY.1100.002254
ORF1ab/nsp3295H295delCAC---2020P.1.150.004647
ORF1ab/nsp3295H295YCacTac1919AY.460.001978
ORF1ab/nsp3295H295HcaCcaT1919B.1.4290.000447
ORF1ab/nsp3295H295DCacGac1818All0.000003
ORF1ab/nsp3295H295YCacTac1818AY.290.000284
ORF1ab/nsp3295H295delCAC---1818P.10.000284
ORF1ab/nsp3295H295YCacTac1717AY.46.50.003373
ORF1ab/nsp3295H295YCacTac1717B.1.1.580.091398
ORF1ab/nsp3295H295YCacTac1717B.1.177.600.003713
ORF1ab/nsp3295H295YCacTac1616B.1.2100.034115
ORF1ab/nsp3295H295HcaCcaT1414AY.440.000085
ORF1ab/nsp3295H295HcaCcaT1414B.1.258.170.001456
ORF1ab/nsp3295H295YCacTac1414B.1.4270.000707
ORF1ab/nsp3295H295YCacTac1414B.1.5770.009622
ORF1ab/nsp3295H295YCacTac1313AY.1000.000598
ORF1ab/nsp3295H295YCacTac1313AY.200.000505
ORF1ab/nsp3295H295YCacTac1313AY.470.000404
ORF1ab/nsp3295H295DCacGac1313B.1.1.70.000012
ORF1ab/nsp3295H295NCacAac1313B.1.1.70.000012
ORF1ab/nsp3295H295YCacTac1313B.1.2400.002802
ORF1ab/nsp3295H295HcaCcaT1313B.1.36.290.006725
ORF1ab/nsp3295H295YCacTac1212AY.39.10.000475
ORF1ab/nsp3295H295YCacTac1111AY.1060.003684
ORF1ab/nsp3295H295HcaCcaT1111B.1.2340.001451
ORF1ab/nsp3295H295YCacTac1010AY.1180.000626
ORF1ab/nsp3295H295HcaCcaT1010AY.39.10.000396
ORF1ab/nsp3295H295YCacTac1010AY.420.000402
ORF1ab/nsp3295H295HcaCcaT1010B.1.10.000181
ORF1ab/nsp3295H295YCacTac1010B.1.1.4060.064935
ORF1ab/nsp3295H295delCAC---1010B.1.1.70.000009
ORF1ab/nsp3295H295YCacTac1010B.1.6210.000885
ORF1ab/nsp3295H295RcAccGc1010C.36.30.005672
ORF1ab/nsp3295H295delCAC---1010P.1.120.00484
ORF1ab/nsp3295H295HcaCcaT99AY.30.00009
ORF1ab/nsp3295H295YCacTac99AY.46.40.001481
ORF1ab/nsp3295H295QcaCcaA99AY.470.00028
ORF1ab/nsp3295H295delCAC---99B.10.000082
ORF1ab/nsp3295H295QcaCcaA79B.1.1.70.000006
ORF1ab/nsp3295H295QcaCcaG29B.1.1.70.000002
ORF1ab/nsp3295H295HcaCcaT99B.1.3510.000268
ORF1ab/nsp3295H295HcaCcaT99B.1.4000.003861
ORF1ab/nsp3295H295YCacTac99C.370.001045
ORF1ab/nsp3295H295HcaCcaT99P.1.100.002425
ORF1ab/nsp3295H295YCacTac88AY.260.000226
ORF1ab/nsp3295H295HcaCcaT88AY.4.20.000174
ORF1ab/nsp3295H295YCacTac88AY.60.000329
ORF1ab/nsp3295H295YCacTac88B.1.177.120.001214
ORF1ab/nsp3295H295YCacTac88B.1.177.430.011817
ORF1ab/nsp3295H295YCacTac77AY.1170.000592
ORF1ab/nsp3295H295HcaCcaT77AY.1190.000247
ORF1ab/nsp3295H295YCacTac77AY.1200.00026
ORF1ab/nsp3295H295YCacTac77AY.230.000488
ORF1ab/nsp3295H295YCacTac77AY.270.000453
ORF1ab/nsp3295H295YCacTac77AY.330.000467
ORF1ab/nsp3295H295HcaCcaT77AY.4.2.10.001043
ORF1ab/nsp3295H295YCacTac77B.1.1.390.003568
ORF1ab/nsp3295H295YCacTac77B.1.160.320.030043
ORF1ab/nsp3295H295YCacTac77B.1.2800.05
ORF1ab/nsp3295H295YCacTac77B.1.36.10.007982
ORF1ab/nsp3295H295YCacTac77D.20.000525
ORF1ab/nsp3295H295HcaCcaT66AY.120.001896
ORF1ab/nsp3295H295YCacTac66AY.410.001764
ORF1ab/nsp3295H295HcaCcaT66AY.540.000572
ORF1ab/nsp3295H295YCacTac66AY.7.10.000676
ORF1ab/nsp3295H295HcaCcaT66AY.740.000694
ORF1ab/nsp3295H295YCacTac66AY.980.000474
ORF1ab/nsp3295H295YCacTac66B.1.1.2140.000333
ORF1ab/nsp3295H295YCacTac66B.1.1.4480.012195
ORF1ab/nsp3295H295YCacTac66B.1.1700.025862
ORF1ab/nsp3295H295YCacTac66B.1.177.510.027397
ORF1ab/nsp3295H295YCacTac66B.1.2430.000418
ORF1ab/nsp3295H295YCacTac66C.360.005464
ORF1ab/nsp3295H295YCacTac55AY.140.00044
ORF1ab/nsp3295H295YCacTac55AY.340.000485
ORF1ab/nsp3295H295RcAccGc55AY.390.000124
ORF1ab/nsp3295H295RcAccGc55AY.46.60.000361
ORF1ab/nsp3295H295YCacTac55AY.530.001438
ORF1ab/nsp3295H295YCacTac55AY.9.20.000184
ORF1ab/nsp3295H295YCacTac55AY.98.10.000242
ORF1ab/nsp3295H295YCacTac55B.1.2340.00066
ORF1ab/nsp3295H295YCacTac55B.1.3490.003574
ORF1ab/nsp3295H295YCacTac55B.1.3690.001426
ORF1ab/nsp3295H295HcaCcaT55B.1.4270.000252
ORF1ab/nsp3295H295YCacTac55B.1.5250.000566
ORF1ab/nsp3295H295LcAccTc44All0.000001
ORF1ab/nsp3295H295RcAccGc44AY.1030.000025
ORF1ab/nsp3295H295QcaCcaA44AY.1210.000541
ORF1ab/nsp3295H295NCacAac44AY.250.000024
ORF1ab/nsp3295H295HcaCcaT44AY.290.000063
ORF1ab/nsp3295H295DCacGac44AY.30.00004
ORF1ab/nsp3295H295YCacTac44AY.320.00213
ORF1ab/nsp3295H295NCacAac44AY.440.000024
ORF1ab/nsp3295H295YCacTac44AY.450.000487
ORF1ab/nsp3295H295YCacTac44AY.540.000381
ORF1ab/nsp3295H295YCacTac44AY.750.000224
ORF1ab/nsp3295H295YCacTac44AY.75.10.000721
ORF1ab/nsp3295H295YCacTac44AY.850.001709
ORF1ab/nsp3295H295YCacTac44AY.9.10.000335
ORF1ab/nsp3295H295YCacTac44B0.000511
ORF1ab/nsp3295H295delCAC---44B.1.10.000073
ORF1ab/nsp3295H295YCacTac44B.1.177.70.000659
ORF1ab/nsp3295H295YCacTac44B.1.177.730.002265
ORF1ab/nsp3295H295RcAccGc44B.1.360.000584
ORF1ab/nsp3295H295YCacTac44B.1.36.170.001976
ORF1ab/nsp3295H295YCacTac44B.1.36.310.007005
ORF1ab/nsp3295H295YCacTac44B.1.5950.001044
ORF1ab/nsp3295H295YCacTac44B.1.617.10.000516
ORF1ab/nsp3295H295QcaCcaA44B.1.617.20.000015
ORF1ab/nsp3295H295delCAC---44B.1.6210.000354
ORF1ab/nsp3295H295YCacTac44B.520.040404
ORF1ab/nsp3295H295QcaCcaA44P.1.140.000191
ORF1ab/nsp3295H295YCacTac44P.20.000747
ORF1ab/nsp3295H295RcAccGc33A0.001161
ORF1ab/nsp3295H295YCacTac33A.2.5.20.004717
ORF1ab/nsp3295H295YCacTac33A.210.00831
ORF1ab/nsp3295H295PcACcCT23All0
ORF1ab/nsp3295H295PcAccCc13All0
ORF1ab/nsp3295H295YCacTac33AY.3.10.000256
ORF1ab/nsp3295H295YCacTac33AY.380.001498
ORF1ab/nsp3295H295NCacAac33AY.39.10.000119
ORF1ab/nsp3295H295QcaCcaA33AY.40.000005
ORF1ab/nsp3295H295RcAccGc33AY.40.000005
ORF1ab/nsp3295H295HcaCcaT33AY.50.000062
ORF1ab/nsp3295H295YCacTac33AY.50.000062
ORF1ab/nsp3295H295YCacTac33AY.520.002443
ORF1ab/nsp3295H295RcAccGc33AY.610.000314
ORF1ab/nsp3295H295YCacTac33AY.690.00056
ORF1ab/nsp3295H295HcaCcaT33AY.690.00056
ORF1ab/nsp3295H295YCacTac33AY.930.000819
ORF1ab/nsp3295H295RcAccGc33B.10.000027
ORF1ab/nsp3295H295HcaCcaT33B.1.1.1170.029126
ORF1ab/nsp3295H295YCacTac33B.1.1.2220.000612
ORF1ab/nsp3295H295YCacTac33B.1.1.3720.002066
ORF1ab/nsp3295H295NCacAac33B.1.1.3970.006757
ORF1ab/nsp3295H295YCacTac33B.1.1.700.001023
ORF1ab/nsp3295H295YCacTac33B.1.1050.028846
ORF1ab/nsp3295H295HcaCcaT33B.1.177.770.002179
ORF1ab/nsp3295H295YCacTac33B.1.2180.015464
ORF1ab/nsp3295H295YCacTac33B.1.2410.002435
ORF1ab/nsp3295H295YCacTac33B.1.3140.022556
ORF1ab/nsp3295H295QcaCcaA33B.1.3510.000089
ORF1ab/nsp3295H295HcaCcaT33B.1.360.000438
ORF1ab/nsp3295H295YCacTac33B.1.360.000438
ORF1ab/nsp3295H295YCacTac33B.1.36.290.001552
ORF1ab/nsp3295H295YCacTac33B.1.5680.003333
ORF1ab/nsp3295H295YCacTac33B.1.5970.013889
ORF1ab/nsp3295H295YCacTac33B.1.6090.001438
ORF1ab/nsp3295H295HcaCcaT33B.1.6210.000266
ORF1ab/nsp3295H295YCacTac33C.350.002322
ORF1ab/nsp3295H295HcaCcaT33C.370.000348
ORF1ab/nsp3295H295delCAC---33C.370.000348
ORF1ab/nsp3295H295HcaCcaT33P.10.000047
ORF1ab/nsp3295H295delCAC---33P.1.140.000143
ORF1ab/nsp3295H295YCacTac33P.1.150.000697
ORF1ab/nsp3295H295RcAccGc33Q.30.000435
ORF1ab/nsp3295H295YCacTac33Q.80.000495
ORF1ab/nsp3295H295YCacTac220.111111
ORF1ab/nsp3295H295PcACcCT220.111111
ORF1ab/nsp3295H295delCAC---220.111111
ORF1ab/nsp3295H295YCacTac22A0.000774
ORF1ab/nsp3295H295HcaCcaT22A0.000774
ORF1ab/nsp3295H295HcaCcaT22A.2.50.000998
ORF1ab/nsp3295H295YCacTac22AD.20.000438
ORF1ab/nsp3295H295YCacTac22AL.10.025974
ORF1ab/nsp3295H295del2CAc--c12All0
ORF1ab/nsp3295H295ICACATT12All0
ORF1ab/nsp3295H295ICAcATc12All0
ORF1ab/nsp3295H295del2CAC--N12All0
ORF1ab/nsp3295H295YCacTac22AY.10.000791
ORF1ab/nsp3295H295delCAC---22AY.1000.000092
ORF1ab/nsp3295H295NCacAac22AY.1010.000981
ORF1ab/nsp3295H295HcaCcaT22AY.1020.000053
ORF1ab/nsp3295H295YCacTac22AY.1160.000574
ORF1ab/nsp3295H295HcaCcaT22AY.1200.000074
ORF1ab/nsp3295H295HcaCcaT22AY.200.000078
ORF1ab/nsp3295H295HcaCcaT22AY.230.000139
ORF1ab/nsp3295H295HcaCcaT22AY.260.000057
ORF1ab/nsp3295H295HcaCcaT22AY.270.000129
ORF1ab/nsp3295H295QcaCcaA22AY.30.00002
ORF1ab/nsp3295H295YCacTac22AY.310.037037
ORF1ab/nsp3295H295HcaCcaT22AY.34.10.00102
ORF1ab/nsp3295H295YCacTac22AY.360.000296
ORF1ab/nsp3295H295HcaCcaT22AY.360.000296
ORF1ab/nsp3295H295YCacTac22AY.370.000632
ORF1ab/nsp3295H295YCacTac22AY.39.20.003082
ORF1ab/nsp3295H295RcAccGc22AY.4.20.000043
ORF1ab/nsp3295H295QcaCcaA22AY.430.000009
ORF1ab/nsp3295H295HcaCcaT22AY.450.000243
ORF1ab/nsp3295H295HcaCcaT22AY.46.60.000144
ORF1ab/nsp3295H295YCacTac22AY.46.60.000144
ORF1ab/nsp3295H295YCacTac22AY.480.00093
ORF1ab/nsp3295H295HcaCcaT22AY.80.001212
ORF1ab/nsp3295H295YCacTac22AY.820.002714
ORF1ab/nsp3295H295YCacTac22AY.99.20.000184
ORF1ab/nsp3295H295QcaCcaG12B.1.10.000018
ORF1ab/nsp3295H295QcaCcaA12B.1.10.000018
ORF1ab/nsp3295H295RcAccGc22B.1.1.2220.000408
ORF1ab/nsp3295H295YCacTac22B.1.1.250.001137
ORF1ab/nsp3295H295HcaCcaT22B.1.1.2970.004474
ORF1ab/nsp3295H295YCacTac22B.1.1.3060.000877
ORF1ab/nsp3295H295YCacTac22B.1.1.3160.00185
ORF1ab/nsp3295H295YCacTac22B.1.1.3170.000823
ORF1ab/nsp3295H295HcaCcaT22B.1.1.3390.021053
ORF1ab/nsp3295H295YCacTac22B.1.177.310.022989
ORF1ab/nsp3295H295YCacTac22B.1.177.350.001382
ORF1ab/nsp3295H295HcaCcaT22B.1.177.40.000422
ORF1ab/nsp3295H295YCacTac22B.1.177.810.000379
ORF1ab/nsp3295H295YCacTac22B.1.177.860.000367
ORF1ab/nsp3295H295YCacTac22B.1.2320.001075
ORF1ab/nsp3295H295HcaCcaT22B.1.2390.002442
ORF1ab/nsp3295H295HcaCcaT22B.1.30.005236
ORF1ab/nsp3295H295YCacTac22B.1.36.80.002
ORF1ab/nsp3295H295YCacTac22B.1.3960.001411
ORF1ab/nsp3295H295YCacTac22B.1.438.10.000215
ORF1ab/nsp3295H295YCacTac22B.1.4590.008163
ORF1ab/nsp3295H295YCacTac22B.1.5170.000854
ORF1ab/nsp3295H295HcaCcaT22B.1.5760.001813
ORF1ab/nsp3295H295YCacTac22B.1.5960.000174
ORF1ab/nsp3295H295YCacTac22B.1.5990.007299
ORF1ab/nsp3295H295YCacTac22B.1.6320.013423
ORF1ab/nsp3295H295YCacTac22B.400.000729
ORF1ab/nsp3295H295YCacTac22C.140.008658
ORF1ab/nsp3295H295YCacTac22C.36.30.001134
ORF1ab/nsp3295H295HcaCcaT22D.20.00015
ORF1ab/nsp3295H295delCAC---22N.60.014184
ORF1ab/nsp3295H295YCacTac22N.90.011905
ORF1ab/nsp3295H295QcaCcaA22P.10.000032
ORF1ab/nsp3295H295HcaCcaT22P.1.140.000096
ORF1ab/nsp3295H295HcaCcaT22P.1.170.000324
ORF1ab/nsp3295H295delCAC---22P.1.70.000639
ORF1ab/nsp3295H295YCacTac22Q.10.000253
ORF1ab/nsp3295H295YCacTac22S.10.009901
ORF1ab/nsp3295H295HcaCcaT11A.2.5.30.010309
ORF1ab/nsp3295H295YCacTac11A.23.10.000704
ORF1ab/nsp3295H295HcaCcaT11A.270.001656
ORF1ab/nsp3295H295YCacTac11A.30.002096
ORF1ab/nsp3295H295TCACACA11All0
ORF1ab/nsp3295H295ECaCGaG11All0
ORF1ab/nsp3295H295CCAcTGc11All0
ORF1ab/nsp3295H295del1caCca-11All0
ORF1ab/nsp3295H295HcaCcaT11AY.1000.000046
ORF1ab/nsp3295H295RcAccGc11AY.1020.000027
ORF1ab/nsp3295H295QcaCcaA11AY.1030.000006
ORF1ab/nsp3295H295HcaCcaT11AY.1070.000466
ORF1ab/nsp3295H295QcaCcaA11AY.1080.001103
ORF1ab/nsp3295H295HcaCcaT11AY.1100.000113
ORF1ab/nsp3295H295HcaCcaT11AY.1130.000142
ORF1ab/nsp3295H295YCacTac11AY.120.000316
ORF1ab/nsp3295H295RcAccGc11AY.120.000316
ORF1ab/nsp3295H295QcaCcaA11AY.120.20.001285
ORF1ab/nsp3295H295HcaCcaT11AY.1210.000135
ORF1ab/nsp3295H295YCacTac11AY.1210.000135
ORF1ab/nsp3295H295YCacTac11AY.130.000161
ORF1ab/nsp3295H295YCacTac11AY.160.00038
ORF1ab/nsp3295H295YCacTac11AY.190.00114
ORF1ab/nsp3295H295delCAC---11AY.230.00007
ORF1ab/nsp3295H295YCacTac11AY.23.10.000417
ORF1ab/nsp3295H295delCAC---11AY.240.000431
ORF1ab/nsp3295H295RcAccGc11AY.250.000006
ORF1ab/nsp3295H295delCAC---11AY.250.000006
ORF1ab/nsp3295H295QcaCcaA11AY.250.000006
ORF1ab/nsp3295H295delCAC---11AY.260.000028
ORF1ab/nsp3295H295QcaCcaA11AY.270.000065
ORF1ab/nsp3295H295HcaCcaT11AY.3.10.000085
ORF1ab/nsp3295H295LcAccTc11AY.3.10.000085
ORF1ab/nsp3295H295YCacTac11AY.34.10.00051
ORF1ab/nsp3295H295YCacTac11AY.350.000233
ORF1ab/nsp3295H295HcaCcaT11AY.390.000025
ORF1ab/nsp3295H295NCacAac11AY.40.000002
ORF1ab/nsp3295H295YCacTac11AY.4.2.10.000149
ORF1ab/nsp3295H295YCacTac11AY.4.50.000107
ORF1ab/nsp3295H295HcaCcaT11AY.420.00004
ORF1ab/nsp3295H295delCAC---11AY.430.000004
ORF1ab/nsp3295H295delCAC---11AY.450.000122
ORF1ab/nsp3295H295HcaCcaT11AY.460.000104
ORF1ab/nsp3295H295YCacTac11AY.46.10.001027
ORF1ab/nsp3295H295QcaCcaA11AY.46.60.000072
ORF1ab/nsp3295H295HcaCcaT11AY.470.000031
ORF1ab/nsp3295H295YCacTac11AY.550.000917
ORF1ab/nsp3295H295YCacTac11AY.590.00053
ORF1ab/nsp3295H295RcAccGc11AY.60.000041
ORF1ab/nsp3295H295QcaCcaA11AY.60.000041
ORF1ab/nsp3295H295YCacTac11AY.610.000105
ORF1ab/nsp3295H295HcaCcaT11AY.610.000105
ORF1ab/nsp3295H295del1caCca-11AY.670.000464
ORF1ab/nsp3295H295delCAC---11AY.680.000274
ORF1ab/nsp3295H295YCacTac11AY.680.000274
ORF1ab/nsp3295H295HcaCcaT11AY.70.000196
ORF1ab/nsp3295H295YCacTac11AY.710.000475
ORF1ab/nsp3295H295YCacTac11AY.720.001361
ORF1ab/nsp3295H295LcAccTc11AY.770.001127
ORF1ab/nsp3295H295YCacTac11AY.800.001129
ORF1ab/nsp3295H295TCACACA11AY.840.000437
ORF1ab/nsp3295H295ECaCGaG11AY.850.000427
ORF1ab/nsp3295H295HcaCcaT11AY.860.00083
ORF1ab/nsp3295H295YCacTac11AY.880.000884
ORF1ab/nsp3295H295RcAccGc11AY.9.20.000037
ORF1ab/nsp3295H295HcaCcaT11AY.9.20.000037
ORF1ab/nsp3295H295RcAccGc11AY.920.000287
ORF1ab/nsp3295H295YCacTac11AY.940.000443
ORF1ab/nsp3295H295YCacTac11AY.950.000761
ORF1ab/nsp3295H295QcaCcaA11AY.980.000079
ORF1ab/nsp3295H295delCAC---11AY.990.001049
ORF1ab/nsp3295H295HcaCcaT11B0.000128
ORF1ab/nsp3295H295NCacAac11B.10.000009
ORF1ab/nsp3295H295ICAcATc11B.1.10.000018
ORF1ab/nsp3295H295YCacTac11B.1.1.100.001115
ORF1ab/nsp3295H295YCacTac11B.1.1.1410.002012
ORF1ab/nsp3295H295NCacAac11B.1.1.1530.001095
ORF1ab/nsp3295H295YCacTac11B.1.1.1890.001513
ORF1ab/nsp3295H295YCacTac11B.1.1.2000.007463
ORF1ab/nsp3295H295RcAccGc11B.1.1.2140.000055
ORF1ab/nsp3295H295RcAccGc11B.1.1.2160.00089
ORF1ab/nsp3295H295YCacTac11B.1.1.2200.001859
ORF1ab/nsp3295H295HcaCcaT11B.1.1.2200.001859
ORF1ab/nsp3295H295HcaCcaT11B.1.1.2220.000204
ORF1ab/nsp3295H295YCacTac11B.1.1.2430.004082
ORF1ab/nsp3295H295YCacTac11B.1.1.2690.001353
ORF1ab/nsp3295H295YCacTac11B.1.1.2770.000759
ORF1ab/nsp3295H295YCacTac11B.1.1.280.000311
ORF1ab/nsp3295H295HcaCcaT11B.1.1.2940.001266
ORF1ab/nsp3295H295YCacTac11B.1.1.3020.002075
ORF1ab/nsp3295H295delCAC---11B.1.1.3060.000438
ORF1ab/nsp3295H295HcaCcaT11B.1.1.3060.000438
ORF1ab/nsp3295H295RcAccGc11B.1.1.3150.008475
ORF1ab/nsp3295H295YCacTac11B.1.1.3260.001761
ORF1ab/nsp3295H295YCacTac11B.1.1.330.000421
ORF1ab/nsp3295H295delCAC---11B.1.1.330.000421
ORF1ab/nsp3295H295delCAC---11B.1.1.3480.000796
ORF1ab/nsp3295H295YCacTac11B.1.1.3510.002793
ORF1ab/nsp3295H295YCacTac11B.1.1.3700.012658
ORF1ab/nsp3295H295YCacTac11B.1.1.3740.002375
ORF1ab/nsp3295H295YCacTac11B.1.1.3890.006061
ORF1ab/nsp3295H295YCacTac11B.1.1.3910.008547
ORF1ab/nsp3295H295YCacTac11B.1.1.4130.006897
ORF1ab/nsp3295H295RcAccGc11B.1.1.4190.007407
ORF1ab/nsp3295H295HcaCcaT11B.1.1.470.005348
ORF1ab/nsp3295H295YCacTac11B.1.1.480.002874
ORF1ab/nsp3295H295HcaCcaT11B.1.1.4820.023256
ORF1ab/nsp3295H295YCacTac11B.1.1.500.000679
ORF1ab/nsp3295H295NCacAac11B.1.1.5190.00004
ORF1ab/nsp3295H295YCacTac11B.1.1.540.003021
ORF1ab/nsp3295H295RcAccGc11B.1.1.540.003021
ORF1ab/nsp3295H295YCacTac11B.1.1.630.000386
ORF1ab/nsp3295H295del2CAC--N11B.1.1.70.000001
ORF1ab/nsp3295H295ICACATT11B.1.1.70.000001
ORF1ab/nsp3295H295YCacTac11B.1.1040.00369
ORF1ab/nsp3295H295YCacTac11B.1.110.30.000718
ORF1ab/nsp3295H295YCacTac11B.1.1280.000635
ORF1ab/nsp3295H295YCacTac11B.1.1390.000733
ORF1ab/nsp3295H295QcaCcaA11B.1.1600.000031
ORF1ab/nsp3295H295LcAccTc11B.1.160.320.004292
ORF1ab/nsp3295H295QcaCcaG11B.1.1770.000013
ORF1ab/nsp3295H295delCAC---11B.1.1770.000013
ORF1ab/nsp3295H295HcaCcaT11B.1.177.210.000076
ORF1ab/nsp3295H295RcAccGc11B.1.177.230.003236
ORF1ab/nsp3295H295YCacTac11B.1.177.440.000519
ORF1ab/nsp3295H295QcaCcaG11B.1.177.460.000918
ORF1ab/nsp3295H295HcaCcaT11B.1.177.540.000606
ORF1ab/nsp3295H295YCacTac11B.1.177.60.000977
ORF1ab/nsp3295H295YCacTac11B.1.177.620.001192
ORF1ab/nsp3295H295PcAccCc11B.1.177.730.000566
ORF1ab/nsp3295H295HcaCcaT11B.1.177.760.002494
ORF1ab/nsp3295H295YCacTac11B.1.177.80.000752
ORF1ab/nsp3295H295YCacTac11B.1.177.840.006667
ORF1ab/nsp3295H295HcaCcaT11B.1.177.860.000183
ORF1ab/nsp3295H295YCacTac11B.1.177.870.000728
ORF1ab/nsp3295H295NCacAac11B.1.20.000009
ORF1ab/nsp3295H295delCAC---11B.1.20.000009
ORF1ab/nsp3295H295delCAC---11B.1.2180.005155
ORF1ab/nsp3295H295YCacTac11B.1.220.001318
ORF1ab/nsp3295H295HcaCcaT11B.1.2230.002778
ORF1ab/nsp3295H295HcaCcaT11B.1.2320.000537
ORF1ab/nsp3295H295delCAC---11B.1.2430.00007
ORF1ab/nsp3295H295YCacTac11B.1.258.110.000396
ORF1ab/nsp3295H295YCacTac11B.1.258.170.000104
ORF1ab/nsp3295H295YCacTac11B.1.258.50.008772
ORF1ab/nsp3295H295HcaCcaT11B.1.2600.003344
ORF1ab/nsp3295H295HcaCcaT11B.1.2840.013158
ORF1ab/nsp3295H295QcaCcaG11B.1.2840.013158
ORF1ab/nsp3295H295HcaCcaT11B.1.3010.005917
ORF1ab/nsp3295H295YCacTac11B.1.3110.000275
ORF1ab/nsp3295H295YCacTac11B.1.3360.002439
ORF1ab/nsp3295H295DCacGac11B.1.3510.00003
ORF1ab/nsp3295H295NCacAac11B.1.3510.00003
ORF1ab/nsp3295H295delCAC---11B.1.360.000146
ORF1ab/nsp3295H295HcaCcaT11B.1.36.380.001642
ORF1ab/nsp3295H295YCacTac11B.1.36.70.004
ORF1ab/nsp3295H295YCacTac11B.1.3620.001541
ORF1ab/nsp3295H295HcaCcaT11B.1.3620.001541
ORF1ab/nsp3295H295YCacTac11B.1.3710.001122
ORF1ab/nsp3295H295YCacTac11B.1.3820.008929
ORF1ab/nsp3295H295QcaCcaA11B.1.3890.001002
ORF1ab/nsp3295H295YCacTac11B.1.4000.000429
ORF1ab/nsp3295H295YCacTac11B.1.4020.009804
ORF1ab/nsp3295H295delCAC---11B.1.4160.001269
ORF1ab/nsp3295H295YCacTac11B.1.416.10.001563
ORF1ab/nsp3295H295QcaCcaA11B.1.4270.00005
ORF1ab/nsp3295H295YCacTac11B.1.4280.00102
ORF1ab/nsp3295H295QcaCcaA11B.1.4290.000024
ORF1ab/nsp3295H295delCAC---11B.1.4290.000024
ORF1ab/nsp3295H295YCacTac11B.1.4360.001029
ORF1ab/nsp3295H295YCacTac11B.1.4450.011765
ORF1ab/nsp3295H295HcaCcaT11B.1.466.20.000391
ORF1ab/nsp3295H295YCacTac11B.1.4700.001404
ORF1ab/nsp3295H295HcaCcaT11B.1.4800.002488
ORF1ab/nsp3295H295HcaCcaT11B.1.4990.00105
ORF1ab/nsp3295H295delCAC---11B.1.5170.000427
ORF1ab/nsp3295H295RcAccGc11B.1.5260.000024
ORF1ab/nsp3295H295YCacTac11B.1.5510.00129
ORF1ab/nsp3295H295YCacTac11B.1.5610.000397
ORF1ab/nsp3295H295YCacTac11B.1.5670.003333
ORF1ab/nsp3295H295YCacTac11B.1.5740.002151
ORF1ab/nsp3295H295HcaCcaT11B.1.5800.004065
ORF1ab/nsp3295H295HcaCcaT11B.1.5810.009434
ORF1ab/nsp3295H295HcaCcaT11B.1.5960.000087
ORF1ab/nsp3295H295delCAC---11B.1.5960.000087
ORF1ab/nsp3295H295HcaCcaT11B.1.6120.002653
ORF1ab/nsp3295H295HcaCcaT11B.1.617.10.000129
ORF1ab/nsp3295H295NCacAac11B.1.617.20.000004
ORF1ab/nsp3295H295CCAcTGc11B.1.617.20.000004
ORF1ab/nsp3295H295LcAccTc11B.1.617.20.000004
ORF1ab/nsp3295H295YCacTac11B.1.619.10.000641
ORF1ab/nsp3295H295delCAC---11B.1.6270.00202
ORF1ab/nsp3295H295RcAccGc11B.100.008264
ORF1ab/nsp3295H295YCacTac11B.3.10.001658
ORF1ab/nsp3295H295QcaCcaA11B.390.002331
ORF1ab/nsp3295H295HcaCcaT11B.60.00091
ORF1ab/nsp3295H295YCacTac11C.300.001727
ORF1ab/nsp3295H295HcaCcaT11C.360.000911
ORF1ab/nsp3295H295RcAccGc11C.360.000911
ORF1ab/nsp3295H295YCacTac11C.37.10.002618
ORF1ab/nsp3295H295YCacTac11C.40.01
ORF1ab/nsp3295H295NCacAac11P.10.000016
ORF1ab/nsp3295H295del2CAc--c11P.10.000016
ORF1ab/nsp3295H295RcAccGc11P.10.000016
ORF1ab/nsp3295H295delCAC---11P.1.10.000318
ORF1ab/nsp3295H295delCAC---11P.1.100.000269
ORF1ab/nsp3295H295YCacTac11P.1.120.000484
ORF1ab/nsp3295H295delCAC---11P.1.130.000898
ORF1ab/nsp3295H295HcaCcaT11P.1.150.000232
ORF1ab/nsp3295H295YCacTac11P.1.17.10.000875
ORF1ab/nsp3295H295delCAC---11P.1.20.001156
ORF1ab/nsp3295H295YCacTac11P.1.40.000977
ORF1ab/nsp3295H295YCacTac11P.1.60.001946
ORF1ab/nsp3295H295YCacTac11P.1.70.000319
ORF1ab/nsp3295H295HcaCcaT11P.30.001595
ORF1ab/nsp3295H295YCacTac11Q.30.000145
ORF1ab/nsp3295H295HcaCcaT11Q.80.000165
ORF1ab/nsp3295H295NCacAac11Q.80.000165
ORF1ab/nsp3295H295HcaCcaT11R.10.00009
ORF1ab/nsp3295H295YCacTac11W.10.008696
ORF1ab/nsp3295H295RcAccGc11Z.10.00289

CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk

CoV-GLUE uses sequence data from GISAID. GISAID data provided via this web application is subject to GISAID's Terms and Conditions.