CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF1ab/nsp3 : CodonNum = 291

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF1ab/nsp3291N291NN1109NsynaaTaaC3608360813590-3592
ORF1ab/nsp3291N291DN1109DnonsynAatGat6336310.996843590-3592
ORF1ab/nsp3291N291DN1109DnonsynAaTGaC63320.003159563590-3592
ORF1ab/nsp3291N291delN1109deldelAAT---13513513590-3592
ORF1ab/nsp3291N291SN1109SnonsynaAtaGt1331320.9924813590-3592
ORF1ab/nsp3291N291SN1109SnonsynaATaGC13310.00751883590-3592
ORF1ab/nsp3291N291HN1109HnonsynAatCat12012013590-3592
ORF1ab/nsp3291N291KN1109KnonsynaaTaaG78730.9358973590-3592
ORF1ab/nsp3291N291KN1109KnonsynaaTaaA7850.06410263590-3592
ORF1ab/nsp3291N291TN1109TnonsynaAtaCt757513590-3592
ORF1ab/nsp3291N291IN1109InonsynaAtaTt131313590-3592
ORF1ab/nsp3291N291YN1109YnonsynAatTat9913590-3592
ORF1ab/nsp3291N291LN1109LnonsynAATCTG640.6666673590-3592
ORF1ab/nsp3291N291LN1109LnonsynAATTTG610.1666673590-3592
ORF1ab/nsp3291N291LN1109LnonsynAAtCTt610.1666673590-3592
ORF1ab/nsp3291N291del1N1109del1delAat-at420.53590-3592
ORF1ab/nsp3291N291del2N1109del2delAAt--t420.53590-3592
ORF1ab/nsp3291N291del2N1109del2delaATa--410.253590-3592
ORF1ab/nsp3291N291del2N1109del2delAAT--C410.253590-3592
ORF1ab/nsp3291N291del1N1109del1delaaTaa-410.253590-3592
ORF1ab/nsp3291N291del1N1109del1delAAt-Mt410.253590-3592
ORF1ab/nsp3291N291VN1109VnonsynAATGTG1113590-3592
ORF1ab/nsp3291N291PN1109PnonsynAATCCC1113590-3592
ORF1ab/nsp3291N291XN1109XnonsynAaTTaG1113590-3592
ORF1ab/nsp3291N291QN1109QnonsynAaTCaA1113590-3592
ORF1ab/nsp3291N291EN1109EnonsynAaTGaG1113590-3592

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF1ab/nsp3291N291NaaTaaC36083608All0.00069
ORF1ab/nsp3291N291NaaTaaC13631363B.1.177.770.989833
ORF1ab/nsp3291N291DAatGat631633All0.000121
ORF1ab/nsp3291N291DAaTGaC2633All0
ORF1ab/nsp3291N291NaaTaaC594594P.1.120.287512
ORF1ab/nsp3291N291NaaTaaC494494AY.40.000769
ORF1ab/nsp3291N291DAatGat264264AY.610.027661
ORF1ab/nsp3291N291NaaTaaC256256B.1.1.70.000229
ORF1ab/nsp3291N291NaaTaaC223223AY.390.005511
ORF1ab/nsp3291N291DAatGat207208B.1.617.20.000779
ORF1ab/nsp3291N291DAaTGaC1208B.1.617.20.000004
ORF1ab/nsp3291N291NaaTaaC138138B.1.617.20.00052
ORF1ab/nsp3291N291delAAT---135135All0.000026
ORF1ab/nsp3291N291SaAtaGt132133All0.000025
ORF1ab/nsp3291N291SaATaGC1133All0
ORF1ab/nsp3291N291HAatCat120120All0.000023
ORF1ab/nsp3291N291NaaTaaC118118AY.1030.000733
ORF1ab/nsp3291N291HAatCat102102AY.1010.050025
ORF1ab/nsp3291N291KaaTaaG7378All0.000014
ORF1ab/nsp3291N291KaaTaaA578All0.000001
ORF1ab/nsp3291N291TaAtaCt7575All0.000014
ORF1ab/nsp3291N291NaaTaaC6565AY.1020.001723
ORF1ab/nsp3291N291TaAtaCt4646B.1.1.70.000041
ORF1ab/nsp3291N291SaAtaGt4243B.1.1.70.000038
ORF1ab/nsp3291N291SaATaGC143B.1.1.70.000001
ORF1ab/nsp3291N291SaAtaGt4040B.1.20.000352
ORF1ab/nsp3291N291NaaTaaC3535AY.1200.001301
ORF1ab/nsp3291N291KaaTaaG3131B.1.1.3160.028677
ORF1ab/nsp3291N291DAatGat3030B.1.1.390.015291
ORF1ab/nsp3291N291DAatGat2627AY.430.000115
ORF1ab/nsp3291N291DAaTGaC127AY.430.000004
ORF1ab/nsp3291N291NaaTaaC2323B.1.1770.000303
ORF1ab/nsp3291N291NaaTaaC2323B.1.20.000203
ORF1ab/nsp3291N291NaaTaaC2222AY.620.009586
ORF1ab/nsp3291N291NaaTaaC2222B.10.000202
ORF1ab/nsp3291N291KaaTaaG1921B.1.1.70.000017
ORF1ab/nsp3291N291KaaTaaA221B.1.1.70.000002
ORF1ab/nsp3291N291NaaTaaC2121B.1.3510.000624
ORF1ab/nsp3291N291delAAT---2020P.10.000315
ORF1ab/nsp3291N291NaaTaaC1919AY.430.000084
ORF1ab/nsp3291N291delAAT---1919P.1.150.004414
ORF1ab/nsp3291N291DAatGat1818AY.75.10.003246
ORF1ab/nsp3291N291DAatGat1616B.1.1.70.000014
ORF1ab/nsp3291N291TaAtaCt1515AY.1030.000093
ORF1ab/nsp3291N291IaAtaTt1313All0.000002
ORF1ab/nsp3291N291delAAT---1313B.1.1.70.000012
ORF1ab/nsp3291N291NaaTaaC1212AY.1190.000424
ORF1ab/nsp3291N291IaAtaTt1111AY.40.000017
ORF1ab/nsp3291N291NaaTaaC1111P.10.000173
ORF1ab/nsp3291N291NaaTaaC1010AY.250.00006
ORF1ab/nsp3291N291delAAT---1010B.10.000092
ORF1ab/nsp3291N291delAAT---1010P.1.120.00484
ORF1ab/nsp3291N291YAatTat99All0.000002
ORF1ab/nsp3291N291SaAtaGt99B.1.2580.000599
ORF1ab/nsp3291N291NaaTaaC88B.1.438.10.000858
ORF1ab/nsp3291N291NaaTaaC77AY.200.000272
ORF1ab/nsp3291N291NaaTaaC77AY.30.00007
ORF1ab/nsp3291N291NaaTaaC77AY.610.000733
ORF1ab/nsp3291N291LAATCTG46All0.000001
ORF1ab/nsp3291N291LAATTTG16All0
ORF1ab/nsp3291N291LAAtCTt16All0
ORF1ab/nsp3291N291DAatGat66AY.1050.003859
ORF1ab/nsp3291N291SaAtaGt66AY.40.000009
ORF1ab/nsp3291N291DAatGat66AY.440.000037
ORF1ab/nsp3291N291SaAtaGt66B.10.000055
ORF1ab/nsp3291N291NaaTaaC55AY.440.00003
ORF1ab/nsp3291N291DAatGat55AY.710.002375
ORF1ab/nsp3291N291DAatGat55AY.910.003652
ORF1ab/nsp3291N291HAatCat55B.1.1.70.000004
ORF1ab/nsp3291N291NaaTaaC55B.1.177.440.002595
ORF1ab/nsp3291N291NaaTaaC55B.1.177.80.003762
ORF1ab/nsp3291N291delAAT---55B.1.6210.000443
ORF1ab/nsp3291N291delAAT---440.222222
ORF1ab/nsp3291N291SaAtaGt44AE.80.001956
ORF1ab/nsp3291N291del1Aat-at24All0
ORF1ab/nsp3291N291del2AAt--t24All0
ORF1ab/nsp3291N291del2AAT--C14All0
ORF1ab/nsp3291N291del2aATa--14All0
ORF1ab/nsp3291N291del1AAt-Mt14All0
ORF1ab/nsp3291N291del1aaTaa-14All0
ORF1ab/nsp3291N291delAAT---44AY.250.000024
ORF1ab/nsp3291N291DAatGat44AY.40.000006
ORF1ab/nsp3291N291NaaTaaC44AY.460.000416
ORF1ab/nsp3291N291NaaTaaC44AY.750.000224
ORF1ab/nsp3291N291delAAT---44B.1.10.000073
ORF1ab/nsp3291N291NaaTaaC44B.1.1.280.001245
ORF1ab/nsp3291N291DAatGat44B.1.1600.000125
ORF1ab/nsp3291N291KaaTaaG44B.1.20.000035
ORF1ab/nsp3291N291HAatCat44B.1.2210.000284
ORF1ab/nsp3291N291KaaTaaG44B.1.617.20.000015
ORF1ab/nsp3291N291NaaTaaC44B.1.6210.000354
ORF1ab/nsp3291N291LAATCTG34P.10.000047
ORF1ab/nsp3291N291LAAtCTt14P.10.000016
ORF1ab/nsp3291N291NaaTaaC33A0.001161
ORF1ab/nsp3291N291NaaTaaC33A.23.10.002113
ORF1ab/nsp3291N291NaaTaaC33AY.1060.001005
ORF1ab/nsp3291N291NaaTaaC33AY.230.000209
ORF1ab/nsp3291N291DAatGat33AY.240.001293
ORF1ab/nsp3291N291SaAtaGt33AY.250.000018
ORF1ab/nsp3291N291HAatCat33AY.250.000018
ORF1ab/nsp3291N291KaaTaaG33AY.450.000365
ORF1ab/nsp3291N291NaaTaaC33AY.540.000286
ORF1ab/nsp3291N291NaaTaaC33AY.990.003148
ORF1ab/nsp3291N291NaaTaaC33B.1.1600.000094
ORF1ab/nsp3291N291NaaTaaC33B.1.2430.000209
ORF1ab/nsp3291N291TaAtaCt33B.1.6370.000219
ORF1ab/nsp3291N291delAAT---33C.370.000348
ORF1ab/nsp3291N291delAAT---33P.1.140.000143
ORF1ab/nsp3291N291NaaTaaC220.111111
ORF1ab/nsp3291N291delAAT---22AY.1000.000092
ORF1ab/nsp3291N291YAatTat22AY.1030.000012
ORF1ab/nsp3291N291DAatGat22AY.1030.000012
ORF1ab/nsp3291N291HAatCat22AY.1060.00067
ORF1ab/nsp3291N291NaaTaaC22AY.1100.000225
ORF1ab/nsp3291N291KaaTaaG22AY.1140.000462
ORF1ab/nsp3291N291NaaTaaC22AY.120.000632
ORF1ab/nsp3291N291YAatTat22AY.1210.000271
ORF1ab/nsp3291N291DAatGat22AY.260.000057
ORF1ab/nsp3291N291NaaTaaC22AY.270.000129
ORF1ab/nsp3291N291NaaTaaC22AY.360.000296
ORF1ab/nsp3291N291DAatGat22AY.390.000049
ORF1ab/nsp3291N291KaaTaaG22AY.40.000003
ORF1ab/nsp3291N291NaaTaaC22AY.4.20.000043
ORF1ab/nsp3291N291NaaTaaC22AY.4.2.10.000298
ORF1ab/nsp3291N291TaAtaCt22AY.470.000062
ORF1ab/nsp3291N291NaaTaaC22AY.60.000082
ORF1ab/nsp3291N291delAAT---22AY.670.000929
ORF1ab/nsp3291N291NaaTaaC22AY.830.003448
ORF1ab/nsp3291N291NaaTaaC22AY.9.10.000167
ORF1ab/nsp3291N291NaaTaaC22AY.980.000158
ORF1ab/nsp3291N291NaaTaaC22AY.99.20.000184
ORF1ab/nsp3291N291HAatCat22B0.000256
ORF1ab/nsp3291N291KaaTaaA12B.10.000009
ORF1ab/nsp3291N291KaaTaaG12B.10.000009
ORF1ab/nsp3291N291NaaTaaC22B.1.10.000036
ORF1ab/nsp3291N291SaAtaGt22B.1.10.000036
ORF1ab/nsp3291N291KaaTaaG22B.1.1.1530.002191
ORF1ab/nsp3291N291NaaTaaC22B.1.1.1530.002191
ORF1ab/nsp3291N291NaaTaaC22B.1.1.3020.004149
ORF1ab/nsp3291N291SaAtaGt22B.1.1.4340.000697
ORF1ab/nsp3291N291DAatGat22B.1.1.5190.000079
ORF1ab/nsp3291N291NaaTaaC22B.1.1.5190.000079
ORF1ab/nsp3291N291SaAtaGt22B.1.1470.001512
ORF1ab/nsp3291N291NaaTaaC22B.1.177.210.000153
ORF1ab/nsp3291N291TaAtaCt22B.1.20.000018
ORF1ab/nsp3291N291DAatGat22B.1.258.160.003273
ORF1ab/nsp3291N291DAatGat22B.1.3510.000059
ORF1ab/nsp3291N291NaaTaaC22B.1.5170.000854
ORF1ab/nsp3291N291delAAT---22B.1.5960.000174
ORF1ab/nsp3291N291delAAT---22B.1.617.20.000008
ORF1ab/nsp3291N291SaAtaGt22B.1.617.20.000008
ORF1ab/nsp3291N291TaAtaCt22B.1.617.20.000008
ORF1ab/nsp3291N291DAatGat22B.1.6210.000177
ORF1ab/nsp3291N291SaAtaGt22B.4.10.037736
ORF1ab/nsp3291N291delAAT---22N.60.014184
ORF1ab/nsp3291N291NaaTaaC22P.1.10.000635
ORF1ab/nsp3291N291delAAT---22P.1.70.000639
ORF1ab/nsp3291N291SaAtaGt11A.2.50.000499
ORF1ab/nsp3291N291QAaTCaA11All0
ORF1ab/nsp3291N291PAATCCC11All0
ORF1ab/nsp3291N291EAaTGaG11All0
ORF1ab/nsp3291N291VAATGTG11All0
ORF1ab/nsp3291N291XAaTTaG11All0
ORF1ab/nsp3291N291DAatGat11AY.100.00053
ORF1ab/nsp3291N291DAatGat11AY.1000.000046
ORF1ab/nsp3291N291DAatGat11AY.1020.000027
ORF1ab/nsp3291N291DAatGat11AY.1100.000113
ORF1ab/nsp3291N291NaaTaaC11AY.1170.000085
ORF1ab/nsp3291N291SaAtaGt11AY.120.10.000321
ORF1ab/nsp3291N291DAatGat11AY.1210.000135
ORF1ab/nsp3291N291NaaTaaC11AY.1210.000135
ORF1ab/nsp3291N291DAatGat11AY.130.000161
ORF1ab/nsp3291N291DAatGat11AY.16.10.00047
ORF1ab/nsp3291N291DAatGat11AY.190.00114
ORF1ab/nsp3291N291YAatTat11AY.200.000039
ORF1ab/nsp3291N291delAAT---11AY.230.00007
ORF1ab/nsp3291N291delAAT---11AY.240.000431
ORF1ab/nsp3291N291NaaTaaC11AY.240.000431
ORF1ab/nsp3291N291del2AAt--t11AY.250.000006
ORF1ab/nsp3291N291DAatGat11AY.250.000006
ORF1ab/nsp3291N291delAAT---11AY.260.000028
ORF1ab/nsp3291N291SaAtaGt11AY.260.000028
ORF1ab/nsp3291N291KaaTaaG11AY.260.000028
ORF1ab/nsp3291N291SaAtaGt11AY.290.000016
ORF1ab/nsp3291N291NaaTaaC11AY.290.000016
ORF1ab/nsp3291N291SaAtaGt11AY.30.00001
ORF1ab/nsp3291N291DAatGat11AY.30.00001
ORF1ab/nsp3291N291NaaTaaC11AY.34.10.00051
ORF1ab/nsp3291N291NaaTaaC11AY.39.10.00004
ORF1ab/nsp3291N291NaaTaaC11AY.39.20.001541
ORF1ab/nsp3291N291del1Aat-at11AY.40.000002
ORF1ab/nsp3291N291NaaTaaC11AY.420.00004
ORF1ab/nsp3291N291delAAT---11AY.420.00004
ORF1ab/nsp3291N291delAAT---11AY.430.000004
ORF1ab/nsp3291N291SaAtaGt11AY.430.000004
ORF1ab/nsp3291N291IaAtaTt11AY.430.000004
ORF1ab/nsp3291N291PAATCCC11AY.440.000006
ORF1ab/nsp3291N291NaaTaaC11AY.450.000122
ORF1ab/nsp3291N291delAAT---11AY.450.000122
ORF1ab/nsp3291N291DAatGat11AY.470.000031
ORF1ab/nsp3291N291NaaTaaC11AY.470.000031
ORF1ab/nsp3291N291YAatTat11AY.470.000031
ORF1ab/nsp3291N291TaAtaCt11AY.50.000021
ORF1ab/nsp3291N291NaaTaaC11AY.50.000021
ORF1ab/nsp3291N291delAAT---11AY.5.30.000337
ORF1ab/nsp3291N291NaaTaaC11AY.520.000814
ORF1ab/nsp3291N291delAAT---11AY.590.00053
ORF1ab/nsp3291N291SaAtaGt11AY.60.000041
ORF1ab/nsp3291N291KaaTaaG11AY.610.000105
ORF1ab/nsp3291N291DAatGat11AY.640.000595
ORF1ab/nsp3291N291NaaTaaC11AY.650.000533
ORF1ab/nsp3291N291DAatGat11AY.650.000533
ORF1ab/nsp3291N291TaAtaCt11AY.680.000274
ORF1ab/nsp3291N291delAAT---11AY.680.000274
ORF1ab/nsp3291N291DAatGat11AY.680.000274
ORF1ab/nsp3291N291NaaTaaC11AY.690.000187
ORF1ab/nsp3291N291DAatGat11AY.750.000056
ORF1ab/nsp3291N291del1AAt-Mt11AY.840.000437
ORF1ab/nsp3291N291LAATTTG11AY.850.000427
ORF1ab/nsp3291N291VAATGTG11AY.850.000427
ORF1ab/nsp3291N291XAaTTaG11AY.850.000427
ORF1ab/nsp3291N291EAaTGaG11AY.850.000427
ORF1ab/nsp3291N291NaaTaaC11AY.880.000884
ORF1ab/nsp3291N291NaaTaaC11AY.90.000068
ORF1ab/nsp3291N291del2AAt--t11AY.90.000068
ORF1ab/nsp3291N291NaaTaaC11AY.9.20.000037
ORF1ab/nsp3291N291NaaTaaC11AY.920.000287
ORF1ab/nsp3291N291DAatGat11AY.950.000761
ORF1ab/nsp3291N291SaAtaGt11AY.98.10.000048
ORF1ab/nsp3291N291delAAT---11AY.990.001049
ORF1ab/nsp3291N291del1Aat-at11B.1.10.000018
ORF1ab/nsp3291N291QAaTCaA11B.1.10.000018
ORF1ab/nsp3291N291YAatTat11B.1.10.000018
ORF1ab/nsp3291N291HAatCat11B.1.10.000018
ORF1ab/nsp3291N291KaaTaaG11B.1.10.000018
ORF1ab/nsp3291N291TaAtaCt11B.1.10.000018
ORF1ab/nsp3291N291DAatGat11B.1.1.2070.001182
ORF1ab/nsp3291N291DAatGat11B.1.1.2220.000204
ORF1ab/nsp3291N291NaaTaaC11B.1.1.2690.001353
ORF1ab/nsp3291N291delAAT---11B.1.1.3060.000438
ORF1ab/nsp3291N291delAAT---11B.1.1.330.000421
ORF1ab/nsp3291N291delAAT---11B.1.1.3480.000796
ORF1ab/nsp3291N291NaaTaaC11B.1.1.3890.006061
ORF1ab/nsp3291N291IaAtaTt11B.1.1.5190.00004
ORF1ab/nsp3291N291del2AAT--C11B.1.1.70.000001
ORF1ab/nsp3291N291YAatTat11B.1.1.70.000001
ORF1ab/nsp3291N291SaAtaGt11B.1.1.80.003584
ORF1ab/nsp3291N291KaaTaaG11B.1.110.30.000718
ORF1ab/nsp3291N291NaaTaaC11B.1.1190.010526
ORF1ab/nsp3291N291DAatGat11B.1.1770.000013
ORF1ab/nsp3291N291delAAT---11B.1.1770.000013
ORF1ab/nsp3291N291TaAtaCt11B.1.177.440.000519
ORF1ab/nsp3291N291NaaTaaC11B.1.177.730.000566
ORF1ab/nsp3291N291KaaTaaA11B.1.177.730.000566
ORF1ab/nsp3291N291DAatGat11B.1.177.860.000183
ORF1ab/nsp3291N291del1aaTaa-11B.1.20.000009
ORF1ab/nsp3291N291delAAT---11B.1.20.000009
ORF1ab/nsp3291N291del2aATa--11B.1.20.000009
ORF1ab/nsp3291N291delAAT---11B.1.2180.005155
ORF1ab/nsp3291N291NaaTaaC11B.1.2210.000071
ORF1ab/nsp3291N291NaaTaaC11B.1.2340.000132
ORF1ab/nsp3291N291delAAT---11B.1.2430.00007
ORF1ab/nsp3291N291NaaTaaC11B.1.2580.000067
ORF1ab/nsp3291N291HAatCat11B.1.2580.000067
ORF1ab/nsp3291N291DAatGat11B.1.2580.000067
ORF1ab/nsp3291N291NaaTaaC11B.1.258.170.000104
ORF1ab/nsp3291N291DAatGat11B.1.258.20.004505
ORF1ab/nsp3291N291NaaTaaC11B.1.3400.004292
ORF1ab/nsp3291N291delAAT---11B.1.3510.00003
ORF1ab/nsp3291N291NaaTaaC11B.1.360.000146
ORF1ab/nsp3291N291KaaTaaA11B.1.360.000146
ORF1ab/nsp3291N291delAAT---11B.1.360.000146
ORF1ab/nsp3291N291SaAtaGt11B.1.36.120.009615
ORF1ab/nsp3291N291NaaTaaC11B.1.3890.001002
ORF1ab/nsp3291N291NaaTaaC11B.1.3960.000706
ORF1ab/nsp3291N291NaaTaaC11B.1.4160.001269
ORF1ab/nsp3291N291NaaTaaC11B.1.4270.00005
ORF1ab/nsp3291N291delAAT---11B.1.4290.000024
ORF1ab/nsp3291N291SaAtaGt11B.1.4330.003195
ORF1ab/nsp3291N291KaaTaaG11B.1.466.20.000391
ORF1ab/nsp3291N291delAAT---11B.1.5170.000427
ORF1ab/nsp3291N291SaAtaGt11B.1.5380.008065
ORF1ab/nsp3291N291YAatTat11B.1.617.20.000004
ORF1ab/nsp3291N291NaaTaaC11B.1.621.10.000506
ORF1ab/nsp3291N291delAAT---11B.1.6270.00202
ORF1ab/nsp3291N291delAAT---11B.340.013699
ORF1ab/nsp3291N291DAatGat11P.10.000016
ORF1ab/nsp3291N291TaAtaCt11P.10.000016
ORF1ab/nsp3291N291delAAT---11P.1.10.000318
ORF1ab/nsp3291N291delAAT---11P.1.100.000269
ORF1ab/nsp3291N291delAAT---11P.1.130.000898
ORF1ab/nsp3291N291NaaTaaC11P.1.140.000048
ORF1ab/nsp3291N291LAATCTG11P.1.170.000162
ORF1ab/nsp3291N291delAAT---11P.1.20.001156
ORF1ab/nsp3291N291NaaTaaC11Q.10.000126
ORF1ab/nsp3291N291delAAT---11Q.20.000613
ORF1ab/nsp3291N291NaaTaaC11Q.30.000145
ORF1ab/nsp3291N291NaaTaaC11Q.80.000165