CoV-GLUE | Mutations | Mutation
Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):
ORF | CodonNum | Mut | ORF1abMut | MutType | RefCodon | MutCodon | AACount | CodonCount | CodonProp | Genome Position |
ORF1ab/nsp3 | 291 | N291N | N1109N | syn | aaT | aaC | 3608 | 3608 | 1 | 3590-3592 |
ORF1ab/nsp3 | 291 | N291D | N1109D | nonsyn | Aat | Gat | 633 | 631 | 0.99684 | 3590-3592 |
ORF1ab/nsp3 | 291 | N291D | N1109D | nonsyn | AaT | GaC | 633 | 2 | 0.00315956 | 3590-3592 |
ORF1ab/nsp3 | 291 | N291del | N1109del | del | AAT | --- | 135 | 135 | 1 | 3590-3592 |
ORF1ab/nsp3 | 291 | N291S | N1109S | nonsyn | aAt | aGt | 133 | 132 | 0.992481 | 3590-3592 |
ORF1ab/nsp3 | 291 | N291S | N1109S | nonsyn | aAT | aGC | 133 | 1 | 0.0075188 | 3590-3592 |
ORF1ab/nsp3 | 291 | N291H | N1109H | nonsyn | Aat | Cat | 120 | 120 | 1 | 3590-3592 |
ORF1ab/nsp3 | 291 | N291K | N1109K | nonsyn | aaT | aaG | 78 | 73 | 0.935897 | 3590-3592 |
ORF1ab/nsp3 | 291 | N291K | N1109K | nonsyn | aaT | aaA | 78 | 5 | 0.0641026 | 3590-3592 |
ORF1ab/nsp3 | 291 | N291T | N1109T | nonsyn | aAt | aCt | 75 | 75 | 1 | 3590-3592 |
ORF1ab/nsp3 | 291 | N291I | N1109I | nonsyn | aAt | aTt | 13 | 13 | 1 | 3590-3592 |
ORF1ab/nsp3 | 291 | N291Y | N1109Y | nonsyn | Aat | Tat | 9 | 9 | 1 | 3590-3592 |
ORF1ab/nsp3 | 291 | N291L | N1109L | nonsyn | AAT | CTG | 6 | 4 | 0.666667 | 3590-3592 |
ORF1ab/nsp3 | 291 | N291L | N1109L | nonsyn | AAT | TTG | 6 | 1 | 0.166667 | 3590-3592 |
ORF1ab/nsp3 | 291 | N291L | N1109L | nonsyn | AAt | CTt | 6 | 1 | 0.166667 | 3590-3592 |
ORF1ab/nsp3 | 291 | N291del1 | N1109del1 | del | Aat | -at | 4 | 2 | 0.5 | 3590-3592 |
ORF1ab/nsp3 | 291 | N291del2 | N1109del2 | del | AAt | --t | 4 | 2 | 0.5 | 3590-3592 |
ORF1ab/nsp3 | 291 | N291del2 | N1109del2 | del | aAT | a-- | 4 | 1 | 0.25 | 3590-3592 |
ORF1ab/nsp3 | 291 | N291del2 | N1109del2 | del | AAT | --C | 4 | 1 | 0.25 | 3590-3592 |
ORF1ab/nsp3 | 291 | N291del1 | N1109del1 | del | aaT | aa- | 4 | 1 | 0.25 | 3590-3592 |
ORF1ab/nsp3 | 291 | N291del1 | N1109del1 | del | AAt | -Mt | 4 | 1 | 0.25 | 3590-3592 |
ORF1ab/nsp3 | 291 | N291V | N1109V | nonsyn | AAT | GTG | 1 | 1 | 1 | 3590-3592 |
ORF1ab/nsp3 | 291 | N291P | N1109P | nonsyn | AAT | CCC | 1 | 1 | 1 | 3590-3592 |
ORF1ab/nsp3 | 291 | N291X | N1109X | nonsyn | AaT | TaG | 1 | 1 | 1 | 3590-3592 |
ORF1ab/nsp3 | 291 | N291Q | N1109Q | nonsyn | AaT | CaA | 1 | 1 | 1 | 3590-3592 |
ORF1ab/nsp3 | 291 | N291E | N1109E | nonsyn | AaT | GaG | 1 | 1 | 1 | 3590-3592 |
Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):
ORF | CodonNum | Mut | RefCodon | MutCodon | CodonCount | AACount | Lineage | LineageCodonProp |
ORF1ab/nsp3 | 291 | N291N | aaT | aaC | 3608 | 3608 | All | 0.00069 |
ORF1ab/nsp3 | 291 | N291N | aaT | aaC | 1363 | 1363 | B.1.177.77 | 0.989833 |
ORF1ab/nsp3 | 291 | N291D | Aat | Gat | 631 | 633 | All | 0.000121 |
ORF1ab/nsp3 | 291 | N291D | AaT | GaC | 2 | 633 | All | 0 |
ORF1ab/nsp3 | 291 | N291N | aaT | aaC | 594 | 594 | P.1.12 | 0.287512 |
ORF1ab/nsp3 | 291 | N291N | aaT | aaC | 494 | 494 | AY.4 | 0.000769 |
ORF1ab/nsp3 | 291 | N291D | Aat | Gat | 264 | 264 | AY.61 | 0.027661 |
ORF1ab/nsp3 | 291 | N291N | aaT | aaC | 256 | 256 | B.1.1.7 | 0.000229 |
ORF1ab/nsp3 | 291 | N291N | aaT | aaC | 223 | 223 | AY.39 | 0.005511 |
ORF1ab/nsp3 | 291 | N291D | Aat | Gat | 207 | 208 | B.1.617.2 | 0.000779 |
ORF1ab/nsp3 | 291 | N291D | AaT | GaC | 1 | 208 | B.1.617.2 | 0.000004 |
ORF1ab/nsp3 | 291 | N291N | aaT | aaC | 138 | 138 | B.1.617.2 | 0.00052 |
ORF1ab/nsp3 | 291 | N291del | AAT | --- | 135 | 135 | All | 0.000026 |
ORF1ab/nsp3 | 291 | N291S | aAt | aGt | 132 | 133 | All | 0.000025 |
ORF1ab/nsp3 | 291 | N291S | aAT | aGC | 1 | 133 | All | 0 |
ORF1ab/nsp3 | 291 | N291H | Aat | Cat | 120 | 120 | All | 0.000023 |
ORF1ab/nsp3 | 291 | N291N | aaT | aaC | 118 | 118 | AY.103 | 0.000733 |
ORF1ab/nsp3 | 291 | N291H | Aat | Cat | 102 | 102 | AY.101 | 0.050025 |
ORF1ab/nsp3 | 291 | N291K | aaT | aaG | 73 | 78 | All | 0.000014 |
ORF1ab/nsp3 | 291 | N291K | aaT | aaA | 5 | 78 | All | 0.000001 |
ORF1ab/nsp3 | 291 | N291T | aAt | aCt | 75 | 75 | All | 0.000014 |
ORF1ab/nsp3 | 291 | N291N | aaT | aaC | 65 | 65 | AY.102 | 0.001723 |
ORF1ab/nsp3 | 291 | N291T | aAt | aCt | 46 | 46 | B.1.1.7 | 0.000041 |
ORF1ab/nsp3 | 291 | N291S | aAt | aGt | 42 | 43 | B.1.1.7 | 0.000038 |
ORF1ab/nsp3 | 291 | N291S | aAT | aGC | 1 | 43 | B.1.1.7 | 0.000001 |
ORF1ab/nsp3 | 291 | N291S | aAt | aGt | 40 | 40 | B.1.2 | 0.000352 |
ORF1ab/nsp3 | 291 | N291N | aaT | aaC | 35 | 35 | AY.120 | 0.001301 |
ORF1ab/nsp3 | 291 | N291K | aaT | aaG | 31 | 31 | B.1.1.316 | 0.028677 |
ORF1ab/nsp3 | 291 | N291D | Aat | Gat | 30 | 30 | B.1.1.39 | 0.015291 |
ORF1ab/nsp3 | 291 | N291D | Aat | Gat | 26 | 27 | AY.43 | 0.000115 |
ORF1ab/nsp3 | 291 | N291D | AaT | GaC | 1 | 27 | AY.43 | 0.000004 |
ORF1ab/nsp3 | 291 | N291N | aaT | aaC | 23 | 23 | B.1.177 | 0.000303 |
ORF1ab/nsp3 | 291 | N291N | aaT | aaC | 23 | 23 | B.1.2 | 0.000203 |
ORF1ab/nsp3 | 291 | N291N | aaT | aaC | 22 | 22 | AY.62 | 0.009586 |
ORF1ab/nsp3 | 291 | N291N | aaT | aaC | 22 | 22 | B.1 | 0.000202 |
ORF1ab/nsp3 | 291 | N291K | aaT | aaG | 19 | 21 | B.1.1.7 | 0.000017 |
ORF1ab/nsp3 | 291 | N291K | aaT | aaA | 2 | 21 | B.1.1.7 | 0.000002 |
ORF1ab/nsp3 | 291 | N291N | aaT | aaC | 21 | 21 | B.1.351 | 0.000624 |
ORF1ab/nsp3 | 291 | N291del | AAT | --- | 20 | 20 | P.1 | 0.000315 |
ORF1ab/nsp3 | 291 | N291N | aaT | aaC | 19 | 19 | AY.43 | 0.000084 |
ORF1ab/nsp3 | 291 | N291del | AAT | --- | 19 | 19 | P.1.15 | 0.004414 |
ORF1ab/nsp3 | 291 | N291D | Aat | Gat | 18 | 18 | AY.75.1 | 0.003246 |
ORF1ab/nsp3 | 291 | N291D | Aat | Gat | 16 | 16 | B.1.1.7 | 0.000014 |
ORF1ab/nsp3 | 291 | N291T | aAt | aCt | 15 | 15 | AY.103 | 0.000093 |
ORF1ab/nsp3 | 291 | N291I | aAt | aTt | 13 | 13 | All | 0.000002 |
ORF1ab/nsp3 | 291 | N291del | AAT | --- | 13 | 13 | B.1.1.7 | 0.000012 |
ORF1ab/nsp3 | 291 | N291N | aaT | aaC | 12 | 12 | AY.119 | 0.000424 |
ORF1ab/nsp3 | 291 | N291I | aAt | aTt | 11 | 11 | AY.4 | 0.000017 |
ORF1ab/nsp3 | 291 | N291N | aaT | aaC | 11 | 11 | P.1 | 0.000173 |
ORF1ab/nsp3 | 291 | N291N | aaT | aaC | 10 | 10 | AY.25 | 0.00006 |
ORF1ab/nsp3 | 291 | N291del | AAT | --- | 10 | 10 | B.1 | 0.000092 |
ORF1ab/nsp3 | 291 | N291del | AAT | --- | 10 | 10 | P.1.12 | 0.00484 |
ORF1ab/nsp3 | 291 | N291Y | Aat | Tat | 9 | 9 | All | 0.000002 |
ORF1ab/nsp3 | 291 | N291S | aAt | aGt | 9 | 9 | B.1.258 | 0.000599 |
ORF1ab/nsp3 | 291 | N291N | aaT | aaC | 8 | 8 | B.1.438.1 | 0.000858 |
ORF1ab/nsp3 | 291 | N291N | aaT | aaC | 7 | 7 | AY.20 | 0.000272 |
ORF1ab/nsp3 | 291 | N291N | aaT | aaC | 7 | 7 | AY.3 | 0.00007 |
ORF1ab/nsp3 | 291 | N291N | aaT | aaC | 7 | 7 | AY.61 | 0.000733 |
ORF1ab/nsp3 | 291 | N291L | AAT | CTG | 4 | 6 | All | 0.000001 |
ORF1ab/nsp3 | 291 | N291L | AAT | TTG | 1 | 6 | All | 0 |
ORF1ab/nsp3 | 291 | N291L | AAt | CTt | 1 | 6 | All | 0 |
ORF1ab/nsp3 | 291 | N291D | Aat | Gat | 6 | 6 | AY.105 | 0.003859 |
ORF1ab/nsp3 | 291 | N291S | aAt | aGt | 6 | 6 | AY.4 | 0.000009 |
ORF1ab/nsp3 | 291 | N291D | Aat | Gat | 6 | 6 | AY.44 | 0.000037 |
ORF1ab/nsp3 | 291 | N291S | aAt | aGt | 6 | 6 | B.1 | 0.000055 |
ORF1ab/nsp3 | 291 | N291N | aaT | aaC | 5 | 5 | AY.44 | 0.00003 |
ORF1ab/nsp3 | 291 | N291D | Aat | Gat | 5 | 5 | AY.71 | 0.002375 |
ORF1ab/nsp3 | 291 | N291D | Aat | Gat | 5 | 5 | AY.91 | 0.003652 |
ORF1ab/nsp3 | 291 | N291H | Aat | Cat | 5 | 5 | B.1.1.7 | 0.000004 |
ORF1ab/nsp3 | 291 | N291N | aaT | aaC | 5 | 5 | B.1.177.44 | 0.002595 |
ORF1ab/nsp3 | 291 | N291N | aaT | aaC | 5 | 5 | B.1.177.8 | 0.003762 |
ORF1ab/nsp3 | 291 | N291del | AAT | --- | 5 | 5 | B.1.621 | 0.000443 |
ORF1ab/nsp3 | 291 | N291del | AAT | --- | 4 | 4 | 0.222222 | |
ORF1ab/nsp3 | 291 | N291S | aAt | aGt | 4 | 4 | AE.8 | 0.001956 |
ORF1ab/nsp3 | 291 | N291del1 | Aat | -at | 2 | 4 | All | 0 |
ORF1ab/nsp3 | 291 | N291del2 | AAt | --t | 2 | 4 | All | 0 |
ORF1ab/nsp3 | 291 | N291del2 | AAT | --C | 1 | 4 | All | 0 |
ORF1ab/nsp3 | 291 | N291del2 | aAT | a-- | 1 | 4 | All | 0 |
ORF1ab/nsp3 | 291 | N291del1 | AAt | -Mt | 1 | 4 | All | 0 |
ORF1ab/nsp3 | 291 | N291del1 | aaT | aa- | 1 | 4 | All | 0 |
ORF1ab/nsp3 | 291 | N291del | AAT | --- | 4 | 4 | AY.25 | 0.000024 |
ORF1ab/nsp3 | 291 | N291D | Aat | Gat | 4 | 4 | AY.4 | 0.000006 |
ORF1ab/nsp3 | 291 | N291N | aaT | aaC | 4 | 4 | AY.46 | 0.000416 |
ORF1ab/nsp3 | 291 | N291N | aaT | aaC | 4 | 4 | AY.75 | 0.000224 |
ORF1ab/nsp3 | 291 | N291del | AAT | --- | 4 | 4 | B.1.1 | 0.000073 |
ORF1ab/nsp3 | 291 | N291N | aaT | aaC | 4 | 4 | B.1.1.28 | 0.001245 |
ORF1ab/nsp3 | 291 | N291D | Aat | Gat | 4 | 4 | B.1.160 | 0.000125 |
ORF1ab/nsp3 | 291 | N291K | aaT | aaG | 4 | 4 | B.1.2 | 0.000035 |
ORF1ab/nsp3 | 291 | N291H | Aat | Cat | 4 | 4 | B.1.221 | 0.000284 |
ORF1ab/nsp3 | 291 | N291K | aaT | aaG | 4 | 4 | B.1.617.2 | 0.000015 |
ORF1ab/nsp3 | 291 | N291N | aaT | aaC | 4 | 4 | B.1.621 | 0.000354 |
ORF1ab/nsp3 | 291 | N291L | AAT | CTG | 3 | 4 | P.1 | 0.000047 |
ORF1ab/nsp3 | 291 | N291L | AAt | CTt | 1 | 4 | P.1 | 0.000016 |
ORF1ab/nsp3 | 291 | N291N | aaT | aaC | 3 | 3 | A | 0.001161 |
ORF1ab/nsp3 | 291 | N291N | aaT | aaC | 3 | 3 | A.23.1 | 0.002113 |
ORF1ab/nsp3 | 291 | N291N | aaT | aaC | 3 | 3 | AY.106 | 0.001005 |
ORF1ab/nsp3 | 291 | N291N | aaT | aaC | 3 | 3 | AY.23 | 0.000209 |
ORF1ab/nsp3 | 291 | N291D | Aat | Gat | 3 | 3 | AY.24 | 0.001293 |
ORF1ab/nsp3 | 291 | N291S | aAt | aGt | 3 | 3 | AY.25 | 0.000018 |
ORF1ab/nsp3 | 291 | N291H | Aat | Cat | 3 | 3 | AY.25 | 0.000018 |
ORF1ab/nsp3 | 291 | N291K | aaT | aaG | 3 | 3 | AY.45 | 0.000365 |
ORF1ab/nsp3 | 291 | N291N | aaT | aaC | 3 | 3 | AY.54 | 0.000286 |
ORF1ab/nsp3 | 291 | N291N | aaT | aaC | 3 | 3 | AY.99 | 0.003148 |
ORF1ab/nsp3 | 291 | N291N | aaT | aaC | 3 | 3 | B.1.160 | 0.000094 |
ORF1ab/nsp3 | 291 | N291N | aaT | aaC | 3 | 3 | B.1.243 | 0.000209 |
ORF1ab/nsp3 | 291 | N291T | aAt | aCt | 3 | 3 | B.1.637 | 0.000219 |
ORF1ab/nsp3 | 291 | N291del | AAT | --- | 3 | 3 | C.37 | 0.000348 |
ORF1ab/nsp3 | 291 | N291del | AAT | --- | 3 | 3 | P.1.14 | 0.000143 |
ORF1ab/nsp3 | 291 | N291N | aaT | aaC | 2 | 2 | 0.111111 | |
ORF1ab/nsp3 | 291 | N291del | AAT | --- | 2 | 2 | AY.100 | 0.000092 |
ORF1ab/nsp3 | 291 | N291Y | Aat | Tat | 2 | 2 | AY.103 | 0.000012 |
ORF1ab/nsp3 | 291 | N291D | Aat | Gat | 2 | 2 | AY.103 | 0.000012 |
ORF1ab/nsp3 | 291 | N291H | Aat | Cat | 2 | 2 | AY.106 | 0.00067 |
ORF1ab/nsp3 | 291 | N291N | aaT | aaC | 2 | 2 | AY.110 | 0.000225 |
ORF1ab/nsp3 | 291 | N291K | aaT | aaG | 2 | 2 | AY.114 | 0.000462 |
ORF1ab/nsp3 | 291 | N291N | aaT | aaC | 2 | 2 | AY.12 | 0.000632 |
ORF1ab/nsp3 | 291 | N291Y | Aat | Tat | 2 | 2 | AY.121 | 0.000271 |
ORF1ab/nsp3 | 291 | N291D | Aat | Gat | 2 | 2 | AY.26 | 0.000057 |
ORF1ab/nsp3 | 291 | N291N | aaT | aaC | 2 | 2 | AY.27 | 0.000129 |
ORF1ab/nsp3 | 291 | N291N | aaT | aaC | 2 | 2 | AY.36 | 0.000296 |
ORF1ab/nsp3 | 291 | N291D | Aat | Gat | 2 | 2 | AY.39 | 0.000049 |
ORF1ab/nsp3 | 291 | N291K | aaT | aaG | 2 | 2 | AY.4 | 0.000003 |
ORF1ab/nsp3 | 291 | N291N | aaT | aaC | 2 | 2 | AY.4.2 | 0.000043 |
ORF1ab/nsp3 | 291 | N291N | aaT | aaC | 2 | 2 | AY.4.2.1 | 0.000298 |
ORF1ab/nsp3 | 291 | N291T | aAt | aCt | 2 | 2 | AY.47 | 0.000062 |
ORF1ab/nsp3 | 291 | N291N | aaT | aaC | 2 | 2 | AY.6 | 0.000082 |
ORF1ab/nsp3 | 291 | N291del | AAT | --- | 2 | 2 | AY.67 | 0.000929 |
ORF1ab/nsp3 | 291 | N291N | aaT | aaC | 2 | 2 | AY.83 | 0.003448 |
ORF1ab/nsp3 | 291 | N291N | aaT | aaC | 2 | 2 | AY.9.1 | 0.000167 |
ORF1ab/nsp3 | 291 | N291N | aaT | aaC | 2 | 2 | AY.98 | 0.000158 |
ORF1ab/nsp3 | 291 | N291N | aaT | aaC | 2 | 2 | AY.99.2 | 0.000184 |
ORF1ab/nsp3 | 291 | N291H | Aat | Cat | 2 | 2 | B | 0.000256 |
ORF1ab/nsp3 | 291 | N291K | aaT | aaA | 1 | 2 | B.1 | 0.000009 |
ORF1ab/nsp3 | 291 | N291K | aaT | aaG | 1 | 2 | B.1 | 0.000009 |
ORF1ab/nsp3 | 291 | N291N | aaT | aaC | 2 | 2 | B.1.1 | 0.000036 |
ORF1ab/nsp3 | 291 | N291S | aAt | aGt | 2 | 2 | B.1.1 | 0.000036 |
ORF1ab/nsp3 | 291 | N291K | aaT | aaG | 2 | 2 | B.1.1.153 | 0.002191 |
ORF1ab/nsp3 | 291 | N291N | aaT | aaC | 2 | 2 | B.1.1.153 | 0.002191 |
ORF1ab/nsp3 | 291 | N291N | aaT | aaC | 2 | 2 | B.1.1.302 | 0.004149 |
ORF1ab/nsp3 | 291 | N291S | aAt | aGt | 2 | 2 | B.1.1.434 | 0.000697 |
ORF1ab/nsp3 | 291 | N291D | Aat | Gat | 2 | 2 | B.1.1.519 | 0.000079 |
ORF1ab/nsp3 | 291 | N291N | aaT | aaC | 2 | 2 | B.1.1.519 | 0.000079 |
ORF1ab/nsp3 | 291 | N291S | aAt | aGt | 2 | 2 | B.1.147 | 0.001512 |
ORF1ab/nsp3 | 291 | N291N | aaT | aaC | 2 | 2 | B.1.177.21 | 0.000153 |
ORF1ab/nsp3 | 291 | N291T | aAt | aCt | 2 | 2 | B.1.2 | 0.000018 |
ORF1ab/nsp3 | 291 | N291D | Aat | Gat | 2 | 2 | B.1.258.16 | 0.003273 |
ORF1ab/nsp3 | 291 | N291D | Aat | Gat | 2 | 2 | B.1.351 | 0.000059 |
ORF1ab/nsp3 | 291 | N291N | aaT | aaC | 2 | 2 | B.1.517 | 0.000854 |
ORF1ab/nsp3 | 291 | N291del | AAT | --- | 2 | 2 | B.1.596 | 0.000174 |
ORF1ab/nsp3 | 291 | N291del | AAT | --- | 2 | 2 | B.1.617.2 | 0.000008 |
ORF1ab/nsp3 | 291 | N291S | aAt | aGt | 2 | 2 | B.1.617.2 | 0.000008 |
ORF1ab/nsp3 | 291 | N291T | aAt | aCt | 2 | 2 | B.1.617.2 | 0.000008 |
ORF1ab/nsp3 | 291 | N291D | Aat | Gat | 2 | 2 | B.1.621 | 0.000177 |
ORF1ab/nsp3 | 291 | N291S | aAt | aGt | 2 | 2 | B.4.1 | 0.037736 |
ORF1ab/nsp3 | 291 | N291del | AAT | --- | 2 | 2 | N.6 | 0.014184 |
ORF1ab/nsp3 | 291 | N291N | aaT | aaC | 2 | 2 | P.1.1 | 0.000635 |
ORF1ab/nsp3 | 291 | N291del | AAT | --- | 2 | 2 | P.1.7 | 0.000639 |
ORF1ab/nsp3 | 291 | N291S | aAt | aGt | 1 | 1 | A.2.5 | 0.000499 |
ORF1ab/nsp3 | 291 | N291Q | AaT | CaA | 1 | 1 | All | 0 |
ORF1ab/nsp3 | 291 | N291P | AAT | CCC | 1 | 1 | All | 0 |
ORF1ab/nsp3 | 291 | N291E | AaT | GaG | 1 | 1 | All | 0 |
ORF1ab/nsp3 | 291 | N291V | AAT | GTG | 1 | 1 | All | 0 |
ORF1ab/nsp3 | 291 | N291X | AaT | TaG | 1 | 1 | All | 0 |
ORF1ab/nsp3 | 291 | N291D | Aat | Gat | 1 | 1 | AY.10 | 0.00053 |
ORF1ab/nsp3 | 291 | N291D | Aat | Gat | 1 | 1 | AY.100 | 0.000046 |
ORF1ab/nsp3 | 291 | N291D | Aat | Gat | 1 | 1 | AY.102 | 0.000027 |
ORF1ab/nsp3 | 291 | N291D | Aat | Gat | 1 | 1 | AY.110 | 0.000113 |
ORF1ab/nsp3 | 291 | N291N | aaT | aaC | 1 | 1 | AY.117 | 0.000085 |
ORF1ab/nsp3 | 291 | N291S | aAt | aGt | 1 | 1 | AY.120.1 | 0.000321 |
ORF1ab/nsp3 | 291 | N291D | Aat | Gat | 1 | 1 | AY.121 | 0.000135 |
ORF1ab/nsp3 | 291 | N291N | aaT | aaC | 1 | 1 | AY.121 | 0.000135 |
ORF1ab/nsp3 | 291 | N291D | Aat | Gat | 1 | 1 | AY.13 | 0.000161 |
ORF1ab/nsp3 | 291 | N291D | Aat | Gat | 1 | 1 | AY.16.1 | 0.00047 |
ORF1ab/nsp3 | 291 | N291D | Aat | Gat | 1 | 1 | AY.19 | 0.00114 |
ORF1ab/nsp3 | 291 | N291Y | Aat | Tat | 1 | 1 | AY.20 | 0.000039 |
ORF1ab/nsp3 | 291 | N291del | AAT | --- | 1 | 1 | AY.23 | 0.00007 |
ORF1ab/nsp3 | 291 | N291del | AAT | --- | 1 | 1 | AY.24 | 0.000431 |
ORF1ab/nsp3 | 291 | N291N | aaT | aaC | 1 | 1 | AY.24 | 0.000431 |
ORF1ab/nsp3 | 291 | N291del2 | AAt | --t | 1 | 1 | AY.25 | 0.000006 |
ORF1ab/nsp3 | 291 | N291D | Aat | Gat | 1 | 1 | AY.25 | 0.000006 |
ORF1ab/nsp3 | 291 | N291del | AAT | --- | 1 | 1 | AY.26 | 0.000028 |
ORF1ab/nsp3 | 291 | N291S | aAt | aGt | 1 | 1 | AY.26 | 0.000028 |
ORF1ab/nsp3 | 291 | N291K | aaT | aaG | 1 | 1 | AY.26 | 0.000028 |
ORF1ab/nsp3 | 291 | N291S | aAt | aGt | 1 | 1 | AY.29 | 0.000016 |
ORF1ab/nsp3 | 291 | N291N | aaT | aaC | 1 | 1 | AY.29 | 0.000016 |
ORF1ab/nsp3 | 291 | N291S | aAt | aGt | 1 | 1 | AY.3 | 0.00001 |
ORF1ab/nsp3 | 291 | N291D | Aat | Gat | 1 | 1 | AY.3 | 0.00001 |
ORF1ab/nsp3 | 291 | N291N | aaT | aaC | 1 | 1 | AY.34.1 | 0.00051 |
ORF1ab/nsp3 | 291 | N291N | aaT | aaC | 1 | 1 | AY.39.1 | 0.00004 |
ORF1ab/nsp3 | 291 | N291N | aaT | aaC | 1 | 1 | AY.39.2 | 0.001541 |
ORF1ab/nsp3 | 291 | N291del1 | Aat | -at | 1 | 1 | AY.4 | 0.000002 |
ORF1ab/nsp3 | 291 | N291N | aaT | aaC | 1 | 1 | AY.42 | 0.00004 |
ORF1ab/nsp3 | 291 | N291del | AAT | --- | 1 | 1 | AY.42 | 0.00004 |
ORF1ab/nsp3 | 291 | N291del | AAT | --- | 1 | 1 | AY.43 | 0.000004 |
ORF1ab/nsp3 | 291 | N291S | aAt | aGt | 1 | 1 | AY.43 | 0.000004 |
ORF1ab/nsp3 | 291 | N291I | aAt | aTt | 1 | 1 | AY.43 | 0.000004 |
ORF1ab/nsp3 | 291 | N291P | AAT | CCC | 1 | 1 | AY.44 | 0.000006 |
ORF1ab/nsp3 | 291 | N291N | aaT | aaC | 1 | 1 | AY.45 | 0.000122 |
ORF1ab/nsp3 | 291 | N291del | AAT | --- | 1 | 1 | AY.45 | 0.000122 |
ORF1ab/nsp3 | 291 | N291D | Aat | Gat | 1 | 1 | AY.47 | 0.000031 |
ORF1ab/nsp3 | 291 | N291N | aaT | aaC | 1 | 1 | AY.47 | 0.000031 |
ORF1ab/nsp3 | 291 | N291Y | Aat | Tat | 1 | 1 | AY.47 | 0.000031 |
ORF1ab/nsp3 | 291 | N291T | aAt | aCt | 1 | 1 | AY.5 | 0.000021 |
ORF1ab/nsp3 | 291 | N291N | aaT | aaC | 1 | 1 | AY.5 | 0.000021 |
ORF1ab/nsp3 | 291 | N291del | AAT | --- | 1 | 1 | AY.5.3 | 0.000337 |
ORF1ab/nsp3 | 291 | N291N | aaT | aaC | 1 | 1 | AY.52 | 0.000814 |
ORF1ab/nsp3 | 291 | N291del | AAT | --- | 1 | 1 | AY.59 | 0.00053 |
ORF1ab/nsp3 | 291 | N291S | aAt | aGt | 1 | 1 | AY.6 | 0.000041 |
ORF1ab/nsp3 | 291 | N291K | aaT | aaG | 1 | 1 | AY.61 | 0.000105 |
ORF1ab/nsp3 | 291 | N291D | Aat | Gat | 1 | 1 | AY.64 | 0.000595 |
ORF1ab/nsp3 | 291 | N291N | aaT | aaC | 1 | 1 | AY.65 | 0.000533 |
ORF1ab/nsp3 | 291 | N291D | Aat | Gat | 1 | 1 | AY.65 | 0.000533 |
ORF1ab/nsp3 | 291 | N291T | aAt | aCt | 1 | 1 | AY.68 | 0.000274 |
ORF1ab/nsp3 | 291 | N291del | AAT | --- | 1 | 1 | AY.68 | 0.000274 |
ORF1ab/nsp3 | 291 | N291D | Aat | Gat | 1 | 1 | AY.68 | 0.000274 |
ORF1ab/nsp3 | 291 | N291N | aaT | aaC | 1 | 1 | AY.69 | 0.000187 |
ORF1ab/nsp3 | 291 | N291D | Aat | Gat | 1 | 1 | AY.75 | 0.000056 |
ORF1ab/nsp3 | 291 | N291del1 | AAt | -Mt | 1 | 1 | AY.84 | 0.000437 |
ORF1ab/nsp3 | 291 | N291L | AAT | TTG | 1 | 1 | AY.85 | 0.000427 |
ORF1ab/nsp3 | 291 | N291V | AAT | GTG | 1 | 1 | AY.85 | 0.000427 |
ORF1ab/nsp3 | 291 | N291X | AaT | TaG | 1 | 1 | AY.85 | 0.000427 |
ORF1ab/nsp3 | 291 | N291E | AaT | GaG | 1 | 1 | AY.85 | 0.000427 |
ORF1ab/nsp3 | 291 | N291N | aaT | aaC | 1 | 1 | AY.88 | 0.000884 |
ORF1ab/nsp3 | 291 | N291N | aaT | aaC | 1 | 1 | AY.9 | 0.000068 |
ORF1ab/nsp3 | 291 | N291del2 | AAt | --t | 1 | 1 | AY.9 | 0.000068 |
ORF1ab/nsp3 | 291 | N291N | aaT | aaC | 1 | 1 | AY.9.2 | 0.000037 |
ORF1ab/nsp3 | 291 | N291N | aaT | aaC | 1 | 1 | AY.92 | 0.000287 |
ORF1ab/nsp3 | 291 | N291D | Aat | Gat | 1 | 1 | AY.95 | 0.000761 |
ORF1ab/nsp3 | 291 | N291S | aAt | aGt | 1 | 1 | AY.98.1 | 0.000048 |
ORF1ab/nsp3 | 291 | N291del | AAT | --- | 1 | 1 | AY.99 | 0.001049 |
ORF1ab/nsp3 | 291 | N291del1 | Aat | -at | 1 | 1 | B.1.1 | 0.000018 |
ORF1ab/nsp3 | 291 | N291Q | AaT | CaA | 1 | 1 | B.1.1 | 0.000018 |
ORF1ab/nsp3 | 291 | N291Y | Aat | Tat | 1 | 1 | B.1.1 | 0.000018 |
ORF1ab/nsp3 | 291 | N291H | Aat | Cat | 1 | 1 | B.1.1 | 0.000018 |
ORF1ab/nsp3 | 291 | N291K | aaT | aaG | 1 | 1 | B.1.1 | 0.000018 |
ORF1ab/nsp3 | 291 | N291T | aAt | aCt | 1 | 1 | B.1.1 | 0.000018 |
ORF1ab/nsp3 | 291 | N291D | Aat | Gat | 1 | 1 | B.1.1.207 | 0.001182 |
ORF1ab/nsp3 | 291 | N291D | Aat | Gat | 1 | 1 | B.1.1.222 | 0.000204 |
ORF1ab/nsp3 | 291 | N291N | aaT | aaC | 1 | 1 | B.1.1.269 | 0.001353 |
ORF1ab/nsp3 | 291 | N291del | AAT | --- | 1 | 1 | B.1.1.306 | 0.000438 |
ORF1ab/nsp3 | 291 | N291del | AAT | --- | 1 | 1 | B.1.1.33 | 0.000421 |
ORF1ab/nsp3 | 291 | N291del | AAT | --- | 1 | 1 | B.1.1.348 | 0.000796 |
ORF1ab/nsp3 | 291 | N291N | aaT | aaC | 1 | 1 | B.1.1.389 | 0.006061 |
ORF1ab/nsp3 | 291 | N291I | aAt | aTt | 1 | 1 | B.1.1.519 | 0.00004 |
ORF1ab/nsp3 | 291 | N291del2 | AAT | --C | 1 | 1 | B.1.1.7 | 0.000001 |
ORF1ab/nsp3 | 291 | N291Y | Aat | Tat | 1 | 1 | B.1.1.7 | 0.000001 |
ORF1ab/nsp3 | 291 | N291S | aAt | aGt | 1 | 1 | B.1.1.8 | 0.003584 |
ORF1ab/nsp3 | 291 | N291K | aaT | aaG | 1 | 1 | B.1.110.3 | 0.000718 |
ORF1ab/nsp3 | 291 | N291N | aaT | aaC | 1 | 1 | B.1.119 | 0.010526 |
ORF1ab/nsp3 | 291 | N291D | Aat | Gat | 1 | 1 | B.1.177 | 0.000013 |
ORF1ab/nsp3 | 291 | N291del | AAT | --- | 1 | 1 | B.1.177 | 0.000013 |
ORF1ab/nsp3 | 291 | N291T | aAt | aCt | 1 | 1 | B.1.177.44 | 0.000519 |
ORF1ab/nsp3 | 291 | N291N | aaT | aaC | 1 | 1 | B.1.177.73 | 0.000566 |
ORF1ab/nsp3 | 291 | N291K | aaT | aaA | 1 | 1 | B.1.177.73 | 0.000566 |
ORF1ab/nsp3 | 291 | N291D | Aat | Gat | 1 | 1 | B.1.177.86 | 0.000183 |
ORF1ab/nsp3 | 291 | N291del1 | aaT | aa- | 1 | 1 | B.1.2 | 0.000009 |
ORF1ab/nsp3 | 291 | N291del | AAT | --- | 1 | 1 | B.1.2 | 0.000009 |
ORF1ab/nsp3 | 291 | N291del2 | aAT | a-- | 1 | 1 | B.1.2 | 0.000009 |
ORF1ab/nsp3 | 291 | N291del | AAT | --- | 1 | 1 | B.1.218 | 0.005155 |
ORF1ab/nsp3 | 291 | N291N | aaT | aaC | 1 | 1 | B.1.221 | 0.000071 |
ORF1ab/nsp3 | 291 | N291N | aaT | aaC | 1 | 1 | B.1.234 | 0.000132 |
ORF1ab/nsp3 | 291 | N291del | AAT | --- | 1 | 1 | B.1.243 | 0.00007 |
ORF1ab/nsp3 | 291 | N291N | aaT | aaC | 1 | 1 | B.1.258 | 0.000067 |
ORF1ab/nsp3 | 291 | N291H | Aat | Cat | 1 | 1 | B.1.258 | 0.000067 |
ORF1ab/nsp3 | 291 | N291D | Aat | Gat | 1 | 1 | B.1.258 | 0.000067 |
ORF1ab/nsp3 | 291 | N291N | aaT | aaC | 1 | 1 | B.1.258.17 | 0.000104 |
ORF1ab/nsp3 | 291 | N291D | Aat | Gat | 1 | 1 | B.1.258.2 | 0.004505 |
ORF1ab/nsp3 | 291 | N291N | aaT | aaC | 1 | 1 | B.1.340 | 0.004292 |
ORF1ab/nsp3 | 291 | N291del | AAT | --- | 1 | 1 | B.1.351 | 0.00003 |
ORF1ab/nsp3 | 291 | N291N | aaT | aaC | 1 | 1 | B.1.36 | 0.000146 |
ORF1ab/nsp3 | 291 | N291K | aaT | aaA | 1 | 1 | B.1.36 | 0.000146 |
ORF1ab/nsp3 | 291 | N291del | AAT | --- | 1 | 1 | B.1.36 | 0.000146 |
ORF1ab/nsp3 | 291 | N291S | aAt | aGt | 1 | 1 | B.1.36.12 | 0.009615 |
ORF1ab/nsp3 | 291 | N291N | aaT | aaC | 1 | 1 | B.1.389 | 0.001002 |
ORF1ab/nsp3 | 291 | N291N | aaT | aaC | 1 | 1 | B.1.396 | 0.000706 |
ORF1ab/nsp3 | 291 | N291N | aaT | aaC | 1 | 1 | B.1.416 | 0.001269 |
ORF1ab/nsp3 | 291 | N291N | aaT | aaC | 1 | 1 | B.1.427 | 0.00005 |
ORF1ab/nsp3 | 291 | N291del | AAT | --- | 1 | 1 | B.1.429 | 0.000024 |
ORF1ab/nsp3 | 291 | N291S | aAt | aGt | 1 | 1 | B.1.433 | 0.003195 |
ORF1ab/nsp3 | 291 | N291K | aaT | aaG | 1 | 1 | B.1.466.2 | 0.000391 |
ORF1ab/nsp3 | 291 | N291del | AAT | --- | 1 | 1 | B.1.517 | 0.000427 |
ORF1ab/nsp3 | 291 | N291S | aAt | aGt | 1 | 1 | B.1.538 | 0.008065 |
ORF1ab/nsp3 | 291 | N291Y | Aat | Tat | 1 | 1 | B.1.617.2 | 0.000004 |
ORF1ab/nsp3 | 291 | N291N | aaT | aaC | 1 | 1 | B.1.621.1 | 0.000506 |
ORF1ab/nsp3 | 291 | N291del | AAT | --- | 1 | 1 | B.1.627 | 0.00202 |
ORF1ab/nsp3 | 291 | N291del | AAT | --- | 1 | 1 | B.34 | 0.013699 |
ORF1ab/nsp3 | 291 | N291D | Aat | Gat | 1 | 1 | P.1 | 0.000016 |
ORF1ab/nsp3 | 291 | N291T | aAt | aCt | 1 | 1 | P.1 | 0.000016 |
ORF1ab/nsp3 | 291 | N291del | AAT | --- | 1 | 1 | P.1.1 | 0.000318 |
ORF1ab/nsp3 | 291 | N291del | AAT | --- | 1 | 1 | P.1.10 | 0.000269 |
ORF1ab/nsp3 | 291 | N291del | AAT | --- | 1 | 1 | P.1.13 | 0.000898 |
ORF1ab/nsp3 | 291 | N291N | aaT | aaC | 1 | 1 | P.1.14 | 0.000048 |
ORF1ab/nsp3 | 291 | N291L | AAT | CTG | 1 | 1 | P.1.17 | 0.000162 |
ORF1ab/nsp3 | 291 | N291del | AAT | --- | 1 | 1 | P.1.2 | 0.001156 |
ORF1ab/nsp3 | 291 | N291N | aaT | aaC | 1 | 1 | Q.1 | 0.000126 |
ORF1ab/nsp3 | 291 | N291del | AAT | --- | 1 | 1 | Q.2 | 0.000613 |
ORF1ab/nsp3 | 291 | N291N | aaT | aaC | 1 | 1 | Q.3 | 0.000145 |
ORF1ab/nsp3 | 291 | N291N | aaT | aaC | 1 | 1 | Q.8 | 0.000165 |
CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk
|