CoV-GLUE | Mutations | Mutation
Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):
ORF | CodonNum | Mut | ORF1abMut | MutType | RefCodon | MutCodon | AACount | CodonCount | CodonProp | Genome Position |
ORF1ab/nsp3 | 287 | L287L | L1105L | syn | ttA | ttG | 395 | 249 | 0.63038 | 3578-3580 |
ORF1ab/nsp3 | 287 | L287L | L1105L | syn | Tta | Cta | 395 | 144 | 0.364557 | 3578-3580 |
ORF1ab/nsp3 | 287 | L287L | L1105L | syn | TtA | CtC | 395 | 1 | 0.00253165 | 3578-3580 |
ORF1ab/nsp3 | 287 | L287L | L1105L | syn | TtA | CtT | 395 | 1 | 0.00253165 | 3578-3580 |
ORF1ab/nsp3 | 287 | L287del | L1105del | del | TTA | --- | 151 | 151 | 1 | 3578-3580 |
ORF1ab/nsp3 | 287 | L287S | L1105S | nonsyn | tTa | tCa | 30 | 28 | 0.933333 | 3578-3580 |
ORF1ab/nsp3 | 287 | L287S | L1105S | nonsyn | tTA | tCG | 30 | 2 | 0.0666667 | 3578-3580 |
ORF1ab/nsp3 | 287 | L287V | L1105V | nonsyn | Tta | Gta | 16 | 16 | 1 | 3578-3580 |
ORF1ab/nsp3 | 287 | L287F | L1105F | nonsyn | ttA | ttT | 11 | 8 | 0.727273 | 3578-3580 |
ORF1ab/nsp3 | 287 | L287F | L1105F | nonsyn | ttA | ttC | 11 | 3 | 0.272727 | 3578-3580 |
ORF1ab/nsp3 | 287 | L287del1 | L1105del1 | del | Tta | -ta | 9 | 4 | 0.444444 | 3578-3580 |
ORF1ab/nsp3 | 287 | L287del1 | L1105del1 | del | ttA | tt- | 9 | 3 | 0.333333 | 3578-3580 |
ORF1ab/nsp3 | 287 | L287del1 | L1105del1 | del | TTA | -NN | 9 | 1 | 0.111111 | 3578-3580 |
ORF1ab/nsp3 | 287 | L287del1 | L1105del1 | del | TtA | Ct- | 9 | 1 | 0.111111 | 3578-3580 |
ORF1ab/nsp3 | 287 | L287X | L1105X | nonsyn | tTa | tAa | 7 | 5 | 0.714286 | 3578-3580 |
ORF1ab/nsp3 | 287 | L287X | L1105X | nonsyn | tTa | tGa | 7 | 2 | 0.285714 | 3578-3580 |
ORF1ab/nsp3 | 287 | L287I | L1105I | nonsyn | Tta | Ata | 6 | 6 | 1 | 3578-3580 |
ORF1ab/nsp3 | 287 | L287del2 | L1105del2 | del | TTA | --N | 4 | 2 | 0.5 | 3578-3580 |
ORF1ab/nsp3 | 287 | L287del2 | L1105del2 | del | TTa | --a | 4 | 2 | 0.5 | 3578-3580 |
ORF1ab/nsp3 | 287 | L287P | L1105P | nonsyn | TTA | CCG | 1 | 1 | 1 | 3578-3580 |
ORF1ab/nsp3 | 287 | L287T | L1105T | nonsyn | TTa | ACa | 1 | 1 | 1 | 3578-3580 |
Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):
ORF | CodonNum | Mut | RefCodon | MutCodon | CodonCount | AACount | Lineage | LineageCodonProp |
ORF1ab/nsp3 | 287 | L287L | ttA | ttG | 249 | 395 | All | 0.000048 |
ORF1ab/nsp3 | 287 | L287L | Tta | Cta | 144 | 395 | All | 0.000028 |
ORF1ab/nsp3 | 287 | L287L | TtA | CtT | 1 | 395 | All | 0 |
ORF1ab/nsp3 | 287 | L287L | TtA | CtC | 1 | 395 | All | 0 |
ORF1ab/nsp3 | 287 | L287del | TTA | --- | 151 | 151 | All | 0.000029 |
ORF1ab/nsp3 | 287 | L287L | ttA | ttG | 92 | 92 | B.1.571 | 0.893204 |
ORF1ab/nsp3 | 287 | L287L | Tta | Cta | 44 | 47 | AY.103 | 0.000273 |
ORF1ab/nsp3 | 287 | L287L | ttA | ttG | 3 | 47 | AY.103 | 0.000019 |
ORF1ab/nsp3 | 287 | L287L | ttA | ttG | 41 | 46 | B.1 | 0.000376 |
ORF1ab/nsp3 | 287 | L287L | Tta | Cta | 5 | 46 | B.1 | 0.000046 |
ORF1ab/nsp3 | 287 | L287L | ttA | ttG | 22 | 31 | B.1.1.7 | 0.00002 |
ORF1ab/nsp3 | 287 | L287L | Tta | Cta | 9 | 31 | B.1.1.7 | 0.000008 |
ORF1ab/nsp3 | 287 | L287S | tTa | tCa | 28 | 30 | All | 0.000005 |
ORF1ab/nsp3 | 287 | L287S | tTA | tCG | 2 | 30 | All | 0 |
ORF1ab/nsp3 | 287 | L287L | Tta | Cta | 30 | 30 | AY.47 | 0.000933 |
ORF1ab/nsp3 | 287 | L287del | TTA | --- | 21 | 21 | P.1 | 0.000331 |
ORF1ab/nsp3 | 287 | L287L | ttA | ttG | 17 | 20 | AY.4 | 0.000026 |
ORF1ab/nsp3 | 287 | L287L | Tta | Cta | 3 | 20 | AY.4 | 0.000005 |
ORF1ab/nsp3 | 287 | L287del | TTA | --- | 20 | 20 | P.1.15 | 0.004647 |
ORF1ab/nsp3 | 287 | L287del | TTA | --- | 18 | 18 | B.1.1.7 | 0.000016 |
ORF1ab/nsp3 | 287 | L287V | Tta | Gta | 16 | 16 | All | 0.000003 |
ORF1ab/nsp3 | 287 | L287L | Tta | Cta | 12 | 13 | B.1.243 | 0.000835 |
ORF1ab/nsp3 | 287 | L287L | ttA | ttG | 1 | 13 | B.1.243 | 0.00007 |
ORF1ab/nsp3 | 287 | L287F | ttA | ttT | 8 | 11 | All | 0.000002 |
ORF1ab/nsp3 | 287 | L287F | ttA | ttC | 3 | 11 | All | 0.000001 |
ORF1ab/nsp3 | 287 | L287L | ttA | ttG | 9 | 11 | B.1.617.2 | 0.000034 |
ORF1ab/nsp3 | 287 | L287L | Tta | Cta | 2 | 11 | B.1.617.2 | 0.000008 |
ORF1ab/nsp3 | 287 | L287L | ttA | ttG | 9 | 10 | P.1 | 0.000142 |
ORF1ab/nsp3 | 287 | L287L | Tta | Cta | 1 | 10 | P.1 | 0.000016 |
ORF1ab/nsp3 | 287 | L287del | TTA | --- | 10 | 10 | P.1.12 | 0.00484 |
ORF1ab/nsp3 | 287 | L287del1 | Tta | -ta | 4 | 9 | All | 0.000001 |
ORF1ab/nsp3 | 287 | L287del1 | ttA | tt- | 3 | 9 | All | 0.000001 |
ORF1ab/nsp3 | 287 | L287del1 | TtA | Ct- | 1 | 9 | All | 0 |
ORF1ab/nsp3 | 287 | L287del1 | TTA | -NN | 1 | 9 | All | 0 |
ORF1ab/nsp3 | 287 | L287del | TTA | --- | 9 | 9 | B.1 | 0.000082 |
ORF1ab/nsp3 | 287 | L287X | tTa | tAa | 5 | 7 | All | 0.000001 |
ORF1ab/nsp3 | 287 | L287X | tTa | tGa | 2 | 7 | All | 0 |
ORF1ab/nsp3 | 287 | L287L | Tta | Cta | 7 | 7 | B.1.240 | 0.001509 |
ORF1ab/nsp3 | 287 | L287I | Tta | Ata | 6 | 6 | All | 0.000001 |
ORF1ab/nsp3 | 287 | L287del | TTA | --- | 6 | 6 | AY.25 | 0.000036 |
ORF1ab/nsp3 | 287 | L287S | tTa | tCa | 6 | 6 | B.1.1 | 0.000109 |
ORF1ab/nsp3 | 287 | L287L | Tta | Cta | 3 | 5 | AY.102 | 0.00008 |
ORF1ab/nsp3 | 287 | L287L | ttA | ttG | 2 | 5 | AY.102 | 0.000053 |
ORF1ab/nsp3 | 287 | L287L | ttA | ttG | 5 | 5 | AY.43 | 0.000022 |
ORF1ab/nsp3 | 287 | L287del | TTA | --- | 5 | 5 | B.1.1 | 0.000091 |
ORF1ab/nsp3 | 287 | L287del | TTA | --- | 4 | 4 | 0.222222 | |
ORF1ab/nsp3 | 287 | L287del2 | TTA | --N | 2 | 4 | All | 0 |
ORF1ab/nsp3 | 287 | L287del2 | TTa | --a | 2 | 4 | All | 0 |
ORF1ab/nsp3 | 287 | L287L | Tta | Cta | 2 | 4 | AY.42 | 0.00008 |
ORF1ab/nsp3 | 287 | L287L | ttA | ttG | 2 | 4 | AY.42 | 0.00008 |
ORF1ab/nsp3 | 287 | L287L | Tta | Cta | 3 | 4 | AY.44 | 0.000018 |
ORF1ab/nsp3 | 287 | L287L | ttA | ttG | 1 | 4 | AY.44 | 0.000006 |
ORF1ab/nsp3 | 287 | L287L | ttA | ttG | 4 | 4 | B.1.177.6 | 0.003906 |
ORF1ab/nsp3 | 287 | L287L | ttA | ttG | 4 | 4 | B.1.2 | 0.000035 |
ORF1ab/nsp3 | 287 | L287del | TTA | --- | 4 | 4 | B.1.621 | 0.000354 |
ORF1ab/nsp3 | 287 | L287L | Tta | Cta | 4 | 4 | C.37 | 0.000464 |
ORF1ab/nsp3 | 287 | L287V | Tta | Gta | 4 | 4 | P.1 | 0.000063 |
ORF1ab/nsp3 | 287 | L287S | tTa | tCa | 3 | 3 | AY.102 | 0.00008 |
ORF1ab/nsp3 | 287 | L287S | tTa | tCa | 2 | 3 | AY.25 | 0.000012 |
ORF1ab/nsp3 | 287 | L287S | tTA | tCG | 1 | 3 | AY.25 | 0.000006 |
ORF1ab/nsp3 | 287 | L287del | TTA | --- | 3 | 3 | AY.4 | 0.000005 |
ORF1ab/nsp3 | 287 | L287L | TtA | CtC | 1 | 3 | AY.46.6 | 0.000072 |
ORF1ab/nsp3 | 287 | L287L | ttA | ttG | 1 | 3 | AY.46.6 | 0.000072 |
ORF1ab/nsp3 | 287 | L287L | Tta | Cta | 1 | 3 | AY.46.6 | 0.000072 |
ORF1ab/nsp3 | 287 | L287L | ttA | ttG | 3 | 3 | AY.99.2 | 0.000276 |
ORF1ab/nsp3 | 287 | L287L | ttA | ttG | 3 | 3 | B.1.427 | 0.000151 |
ORF1ab/nsp3 | 287 | L287del | TTA | --- | 3 | 3 | C.37 | 0.000348 |
ORF1ab/nsp3 | 287 | L287del | TTA | --- | 3 | 3 | P.1.14 | 0.000143 |
ORF1ab/nsp3 | 287 | L287X | tTa | tAa | 2 | 2 | 0.111111 | |
ORF1ab/nsp3 | 287 | L287del | TTA | --- | 2 | 2 | AY.100 | 0.000092 |
ORF1ab/nsp3 | 287 | L287L | ttA | ttG | 2 | 2 | AY.29 | 0.000032 |
ORF1ab/nsp3 | 287 | L287L | Tta | Cta | 1 | 2 | AY.39 | 0.000025 |
ORF1ab/nsp3 | 287 | L287L | ttA | ttG | 1 | 2 | AY.39 | 0.000025 |
ORF1ab/nsp3 | 287 | L287V | Tta | Gta | 2 | 2 | AY.42 | 0.00008 |
ORF1ab/nsp3 | 287 | L287F | ttA | ttT | 2 | 2 | AY.44 | 0.000012 |
ORF1ab/nsp3 | 287 | L287del1 | ttA | tt- | 1 | 2 | AY.44 | 0.000006 |
ORF1ab/nsp3 | 287 | L287del1 | TtA | Ct- | 1 | 2 | AY.44 | 0.000006 |
ORF1ab/nsp3 | 287 | L287L | Tta | Cta | 2 | 2 | AY.61 | 0.00021 |
ORF1ab/nsp3 | 287 | L287L | ttA | ttG | 2 | 2 | AY.86 | 0.00166 |
ORF1ab/nsp3 | 287 | L287F | ttA | ttC | 2 | 2 | B | 0.000256 |
ORF1ab/nsp3 | 287 | L287L | ttA | ttG | 1 | 2 | B.1.1 | 0.000018 |
ORF1ab/nsp3 | 287 | L287L | Tta | Cta | 1 | 2 | B.1.1 | 0.000018 |
ORF1ab/nsp3 | 287 | L287L | ttA | ttG | 2 | 2 | B.1.1.37 | 0.000386 |
ORF1ab/nsp3 | 287 | L287F | ttA | ttT | 2 | 2 | B.1.1.7 | 0.000002 |
ORF1ab/nsp3 | 287 | L287V | Tta | Gta | 2 | 2 | B.1.1.7 | 0.000002 |
ORF1ab/nsp3 | 287 | L287X | tTa | tAa | 1 | 2 | B.1.1.7 | 0.000001 |
ORF1ab/nsp3 | 287 | L287X | tTa | tGa | 1 | 2 | B.1.1.7 | 0.000001 |
ORF1ab/nsp3 | 287 | L287del | TTA | --- | 2 | 2 | B.1.2 | 0.000018 |
ORF1ab/nsp3 | 287 | L287I | Tta | Ata | 2 | 2 | B.1.2 | 0.000018 |
ORF1ab/nsp3 | 287 | L287del | TTA | --- | 2 | 2 | B.1.243 | 0.000139 |
ORF1ab/nsp3 | 287 | L287S | tTa | tCa | 2 | 2 | B.1.250 | 0.028986 |
ORF1ab/nsp3 | 287 | L287del | TTA | --- | 2 | 2 | B.1.351 | 0.000059 |
ORF1ab/nsp3 | 287 | L287L | Tta | Cta | 2 | 2 | B.1.399 | 0.003868 |
ORF1ab/nsp3 | 287 | L287L | ttA | ttG | 2 | 2 | B.1.416 | 0.002538 |
ORF1ab/nsp3 | 287 | L287S | tTa | tCa | 2 | 2 | B.1.596 | 0.000174 |
ORF1ab/nsp3 | 287 | L287L | ttA | ttG | 2 | 2 | B.1.617.1 | 0.000258 |
ORF1ab/nsp3 | 287 | L287del | TTA | --- | 2 | 2 | B.1.617.2 | 0.000008 |
ORF1ab/nsp3 | 287 | L287L | TtA | CtT | 1 | 2 | B.1.621 | 0.000089 |
ORF1ab/nsp3 | 287 | L287L | ttA | ttG | 1 | 2 | B.1.621 | 0.000089 |
ORF1ab/nsp3 | 287 | L287del | TTA | --- | 2 | 2 | N.6 | 0.014184 |
ORF1ab/nsp3 | 287 | L287del1 | Tta | -ta | 2 | 2 | P.1 | 0.000032 |
ORF1ab/nsp3 | 287 | L287L | Tta | Cta | 2 | 2 | P.1.14 | 0.000096 |
ORF1ab/nsp3 | 287 | L287del | TTA | --- | 2 | 2 | P.1.7 | 0.000639 |
ORF1ab/nsp3 | 287 | L287T | TTa | ACa | 1 | 1 | All | 0 |
ORF1ab/nsp3 | 287 | L287P | TTA | CCG | 1 | 1 | All | 0 |
ORF1ab/nsp3 | 287 | L287I | Tta | Ata | 1 | 1 | AP.1 | 0.001502 |
ORF1ab/nsp3 | 287 | L287del2 | TTA | --N | 1 | 1 | AY.100 | 0.000046 |
ORF1ab/nsp3 | 287 | L287S | tTa | tCa | 1 | 1 | AY.100 | 0.000046 |
ORF1ab/nsp3 | 287 | L287S | tTa | tCa | 1 | 1 | AY.117 | 0.000085 |
ORF1ab/nsp3 | 287 | L287V | Tta | Gta | 1 | 1 | AY.121 | 0.000135 |
ORF1ab/nsp3 | 287 | L287S | tTa | tCa | 1 | 1 | AY.121 | 0.000135 |
ORF1ab/nsp3 | 287 | L287L | Tta | Cta | 1 | 1 | AY.121 | 0.000135 |
ORF1ab/nsp3 | 287 | L287L | ttA | ttG | 1 | 1 | AY.16 | 0.00038 |
ORF1ab/nsp3 | 287 | L287L | Tta | Cta | 1 | 1 | AY.20 | 0.000039 |
ORF1ab/nsp3 | 287 | L287del | TTA | --- | 1 | 1 | AY.23 | 0.00007 |
ORF1ab/nsp3 | 287 | L287del | TTA | --- | 1 | 1 | AY.24 | 0.000431 |
ORF1ab/nsp3 | 287 | L287L | ttA | ttG | 1 | 1 | AY.25 | 0.000006 |
ORF1ab/nsp3 | 287 | L287del | TTA | --- | 1 | 1 | AY.26 | 0.000028 |
ORF1ab/nsp3 | 287 | L287L | Tta | Cta | 1 | 1 | AY.26 | 0.000028 |
ORF1ab/nsp3 | 287 | L287S | tTa | tCa | 1 | 1 | AY.29 | 0.000016 |
ORF1ab/nsp3 | 287 | L287L | Tta | Cta | 1 | 1 | AY.3 | 0.00001 |
ORF1ab/nsp3 | 287 | L287S | tTa | tCa | 1 | 1 | AY.33 | 0.000067 |
ORF1ab/nsp3 | 287 | L287L | ttA | ttG | 1 | 1 | AY.39.1 | 0.00004 |
ORF1ab/nsp3 | 287 | L287S | tTa | tCa | 1 | 1 | AY.4 | 0.000002 |
ORF1ab/nsp3 | 287 | L287I | Tta | Ata | 1 | 1 | AY.4 | 0.000002 |
ORF1ab/nsp3 | 287 | L287del | TTA | --- | 1 | 1 | AY.42 | 0.00004 |
ORF1ab/nsp3 | 287 | L287S | tTa | tCa | 1 | 1 | AY.43 | 0.000004 |
ORF1ab/nsp3 | 287 | L287del2 | TTA | --N | 1 | 1 | AY.43 | 0.000004 |
ORF1ab/nsp3 | 287 | L287del | TTA | --- | 1 | 1 | AY.43 | 0.000004 |
ORF1ab/nsp3 | 287 | L287V | Tta | Gta | 1 | 1 | AY.43 | 0.000004 |
ORF1ab/nsp3 | 287 | L287del | TTA | --- | 1 | 1 | AY.45 | 0.000122 |
ORF1ab/nsp3 | 287 | L287I | Tta | Ata | 1 | 1 | AY.46 | 0.000104 |
ORF1ab/nsp3 | 287 | L287F | ttA | ttC | 1 | 1 | AY.46.6 | 0.000072 |
ORF1ab/nsp3 | 287 | L287S | tTa | tCa | 1 | 1 | AY.5.1 | 0.003759 |
ORF1ab/nsp3 | 287 | L287del | TTA | --- | 1 | 1 | AY.5.3 | 0.000337 |
ORF1ab/nsp3 | 287 | L287L | ttA | ttG | 1 | 1 | AY.53 | 0.000288 |
ORF1ab/nsp3 | 287 | L287L | Tta | Cta | 1 | 1 | AY.54 | 0.000095 |
ORF1ab/nsp3 | 287 | L287L | ttA | ttG | 1 | 1 | AY.59 | 0.00053 |
ORF1ab/nsp3 | 287 | L287del | TTA | --- | 1 | 1 | AY.59 | 0.00053 |
ORF1ab/nsp3 | 287 | L287del | TTA | --- | 1 | 1 | AY.64 | 0.000595 |
ORF1ab/nsp3 | 287 | L287F | ttA | ttT | 1 | 1 | AY.67 | 0.000464 |
ORF1ab/nsp3 | 287 | L287del | TTA | --- | 1 | 1 | AY.67 | 0.000464 |
ORF1ab/nsp3 | 287 | L287S | tTa | tCa | 1 | 1 | AY.68 | 0.000274 |
ORF1ab/nsp3 | 287 | L287del | TTA | --- | 1 | 1 | AY.68 | 0.000274 |
ORF1ab/nsp3 | 287 | L287L | ttA | ttG | 1 | 1 | AY.75 | 0.000056 |
ORF1ab/nsp3 | 287 | L287L | Tta | Cta | 1 | 1 | AY.75.1 | 0.00018 |
ORF1ab/nsp3 | 287 | L287del | TTA | --- | 1 | 1 | AY.84 | 0.000437 |
ORF1ab/nsp3 | 287 | L287del | TTA | --- | 1 | 1 | AY.9 | 0.000068 |
ORF1ab/nsp3 | 287 | L287L | ttA | ttG | 1 | 1 | AY.94 | 0.000443 |
ORF1ab/nsp3 | 287 | L287L | Tta | Cta | 1 | 1 | AY.98 | 0.000079 |
ORF1ab/nsp3 | 287 | L287del | TTA | --- | 1 | 1 | AY.99 | 0.001049 |
ORF1ab/nsp3 | 287 | L287X | tTa | tGa | 1 | 1 | AY.99.2 | 0.000092 |
ORF1ab/nsp3 | 287 | L287del1 | ttA | tt- | 1 | 1 | B.1 | 0.000009 |
ORF1ab/nsp3 | 287 | L287V | Tta | Gta | 1 | 1 | B.1 | 0.000009 |
ORF1ab/nsp3 | 287 | L287del | TTA | --- | 1 | 1 | B.1.1.137 | 0.0125 |
ORF1ab/nsp3 | 287 | L287V | Tta | Gta | 1 | 1 | B.1.1.153 | 0.001095 |
ORF1ab/nsp3 | 287 | L287del | TTA | --- | 1 | 1 | B.1.1.174 | 0.003378 |
ORF1ab/nsp3 | 287 | L287del | TTA | --- | 1 | 1 | B.1.1.33 | 0.000421 |
ORF1ab/nsp3 | 287 | L287L | ttA | ttG | 1 | 1 | B.1.1.333 | 0.001076 |
ORF1ab/nsp3 | 287 | L287del | TTA | --- | 1 | 1 | B.1.1.348 | 0.000796 |
ORF1ab/nsp3 | 287 | L287L | ttA | ttG | 1 | 1 | B.1.1.411 | 0.014706 |
ORF1ab/nsp3 | 287 | L287del2 | TTa | --a | 1 | 1 | B.1.1.7 | 0.000001 |
ORF1ab/nsp3 | 287 | L287S | tTa | tCa | 1 | 1 | B.1.1.7 | 0.000001 |
ORF1ab/nsp3 | 287 | L287T | TTa | ACa | 1 | 1 | B.1.1.7 | 0.000001 |
ORF1ab/nsp3 | 287 | L287del1 | TTA | -NN | 1 | 1 | B.1.1.7 | 0.000001 |
ORF1ab/nsp3 | 287 | L287del1 | Tta | -ta | 1 | 1 | B.1.160 | 0.000031 |
ORF1ab/nsp3 | 287 | L287L | ttA | ttG | 1 | 1 | B.1.177 | 0.000013 |
ORF1ab/nsp3 | 287 | L287del | TTA | --- | 1 | 1 | B.1.177 | 0.000013 |
ORF1ab/nsp3 | 287 | L287L | Tta | Cta | 1 | 1 | B.1.177.75 | 0.001041 |
ORF1ab/nsp3 | 287 | L287S | tTa | tCa | 1 | 1 | B.1.2 | 0.000009 |
ORF1ab/nsp3 | 287 | L287del1 | Tta | -ta | 1 | 1 | B.1.2 | 0.000009 |
ORF1ab/nsp3 | 287 | L287L | ttA | ttG | 1 | 1 | B.1.214.2 | 0.0006 |
ORF1ab/nsp3 | 287 | L287del | TTA | --- | 1 | 1 | B.1.218 | 0.005155 |
ORF1ab/nsp3 | 287 | L287L | ttA | ttG | 1 | 1 | B.1.221 | 0.000071 |
ORF1ab/nsp3 | 287 | L287S | tTa | tCa | 1 | 1 | B.1.279 | 0.000514 |
ORF1ab/nsp3 | 287 | L287F | ttA | ttT | 1 | 1 | B.1.311 | 0.000275 |
ORF1ab/nsp3 | 287 | L287L | ttA | ttG | 1 | 1 | B.1.351 | 0.00003 |
ORF1ab/nsp3 | 287 | L287del | TTA | --- | 1 | 1 | B.1.36 | 0.000146 |
ORF1ab/nsp3 | 287 | L287L | ttA | ttG | 1 | 1 | B.1.369 | 0.000285 |
ORF1ab/nsp3 | 287 | L287I | Tta | Ata | 1 | 1 | B.1.375 | 0.00082 |
ORF1ab/nsp3 | 287 | L287L | ttA | ttG | 1 | 1 | B.1.409 | 0.000781 |
ORF1ab/nsp3 | 287 | L287del | TTA | --- | 1 | 1 | B.1.429 | 0.000024 |
ORF1ab/nsp3 | 287 | L287del | TTA | --- | 1 | 1 | B.1.517 | 0.000427 |
ORF1ab/nsp3 | 287 | L287L | ttA | ttG | 1 | 1 | B.1.525 | 0.000113 |
ORF1ab/nsp3 | 287 | L287L | ttA | ttG | 1 | 1 | B.1.558 | 0.004566 |
ORF1ab/nsp3 | 287 | L287S | tTA | tCG | 1 | 1 | B.1.571 | 0.009709 |
ORF1ab/nsp3 | 287 | L287del | TTA | --- | 1 | 1 | B.1.596 | 0.000087 |
ORF1ab/nsp3 | 287 | L287del1 | ttA | tt- | 1 | 1 | B.1.617.1 | 0.000129 |
ORF1ab/nsp3 | 287 | L287V | Tta | Gta | 1 | 1 | B.1.617.1 | 0.000129 |
ORF1ab/nsp3 | 287 | L287F | ttA | ttT | 1 | 1 | B.1.617.2 | 0.000004 |
ORF1ab/nsp3 | 287 | L287P | TTA | CCG | 1 | 1 | B.1.617.2 | 0.000004 |
ORF1ab/nsp3 | 287 | L287S | tTa | tCa | 1 | 1 | B.1.617.2 | 0.000004 |
ORF1ab/nsp3 | 287 | L287X | tTa | tAa | 1 | 1 | B.1.617.2 | 0.000004 |
ORF1ab/nsp3 | 287 | L287del | TTA | --- | 1 | 1 | B.1.627 | 0.00202 |
ORF1ab/nsp3 | 287 | L287del | TTA | --- | 1 | 1 | B.34 | 0.013699 |
ORF1ab/nsp3 | 287 | L287L | Tta | Cta | 1 | 1 | B.4.1 | 0.018868 |
ORF1ab/nsp3 | 287 | L287V | Tta | Gta | 1 | 1 | D.2 | 0.000075 |
ORF1ab/nsp3 | 287 | L287del2 | TTa | --a | 1 | 1 | P.1 | 0.000016 |
ORF1ab/nsp3 | 287 | L287X | tTa | tAa | 1 | 1 | P.1 | 0.000016 |
ORF1ab/nsp3 | 287 | L287del | TTA | --- | 1 | 1 | P.1.1 | 0.000318 |
ORF1ab/nsp3 | 287 | L287del | TTA | --- | 1 | 1 | P.1.10 | 0.000269 |
ORF1ab/nsp3 | 287 | L287del | TTA | --- | 1 | 1 | P.1.13 | 0.000898 |
ORF1ab/nsp3 | 287 | L287L | Tta | Cta | 1 | 1 | P.1.16 | 0.000374 |
ORF1ab/nsp3 | 287 | L287V | Tta | Gta | 1 | 1 | P.1.17 | 0.000162 |
ORF1ab/nsp3 | 287 | L287F | ttA | ttT | 1 | 1 | P.1.17 | 0.000162 |
ORF1ab/nsp3 | 287 | L287del | TTA | --- | 1 | 1 | P.1.2 | 0.001156 |
ORF1ab/nsp3 | 287 | L287del | TTA | --- | 1 | 1 | Q.2 | 0.000613 |
ORF1ab/nsp3 | 287 | L287V | Tta | Gta | 1 | 1 | Q.8 | 0.000165 |
CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk
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