CoV-GLUEGenomeCountriesLineagesMutationsInsertionsDeletionsUpdated:

CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF1ab/nsp3 : CodonNum = 284 & Codon = Ggt

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF1ab/nsp3284S284GS1102GnonsynAgtGgt196819670.9994923569-3571

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF1ab/nsp3284S284GAgtGgt19671968All0.000376
ORF1ab/nsp3284S284GAgtGgt268268B.1.1.2170.974545
ORF1ab/nsp3284S284GAgtGgt227227B.1.1.70.000203
ORF1ab/nsp3284S284GAgtGgt215215AY.650.114606
ORF1ab/nsp3284S284GAgtGgt198198S.10.980198
ORF1ab/nsp3284S284GAgtGgt147147AY.250.000884
ORF1ab/nsp3284S284GAgtGgt118118AY.40.000184
ORF1ab/nsp3284S284GAgtGgt5252AY.39.10.00206
ORF1ab/nsp3284S284GAgtGgt5252B.1.1600.001622
ORF1ab/nsp3284S284GAgtGgt4646P.10.000725
ORF1ab/nsp3284S284GAgtGgt4343B.10.000394
ORF1ab/nsp3284S284GAgtGgt3939B.1.1770.000514
ORF1ab/nsp3284S284GAgtGgt3737AY.1030.00023
ORF1ab/nsp3284S284GAgtGgt3637AY.440.000219
ORF1ab/nsp3284S284GAgtGgt2929B.1.617.20.000109
ORF1ab/nsp3284S284GAgtGgt2727AY.430.00012
ORF1ab/nsp3284S284GAgtGgt2525AY.420.001006
ORF1ab/nsp3284S284GAgtGgt2424B.1.20.000211
ORF1ab/nsp3284S284GAgtGgt1717AY.30.000169
ORF1ab/nsp3284S284GAgtGgt1717B.1.10.000308
ORF1ab/nsp3284S284GAgtGgt1515AY.470.000467
ORF1ab/nsp3284S284GAgtGgt1515B.1.1.330.006313
ORF1ab/nsp3284S284GAgtGgt1212R.10.00108
ORF1ab/nsp3284S284GAgtGgt1111AY.290.000174
ORF1ab/nsp3284S284GAgtGgt1111B.1.4290.000259
ORF1ab/nsp3284S284GAgtGgt1010AY.200.000389
ORF1ab/nsp3284S284GAgtGgt1010B.1.177.170.00821
ORF1ab/nsp3284S284GAgtGgt88AY.99.20.000737
ORF1ab/nsp3284S284GAgtGgt88B.1.1.630.003086
ORF1ab/nsp3284S284GAgtGgt88B.1.2580.000532
ORF1ab/nsp3284S284GAgtGgt77AY.1020.000186
ORF1ab/nsp3284S284GAgtGgt77AY.340.000679
ORF1ab/nsp3284S284GAgtGgt77AY.46.60.000505
ORF1ab/nsp3284S284GAgtGgt77B.1.1.1330.059322
ORF1ab/nsp3284S284GAgtGgt77B.1.36.220.008454
ORF1ab/nsp3284S284GAgtGgt77B.6.60.006222
ORF1ab/nsp3284S284GAgtGgt66B.1.177.600.001311
ORF1ab/nsp3284S284GAgtGgt66B.1.5260.000141
ORF1ab/nsp3284S284GAgtGgt55AY.1000.00023
ORF1ab/nsp3284S284GAgtGgt55AY.110.006693
ORF1ab/nsp3284S284GAgtGgt55B.1.2180.025773
ORF1ab/nsp3284S284GAgtGgt55B.1.3510.000149
ORF1ab/nsp3284S284GAgtGgt55C.10.011962
ORF1ab/nsp3284S284GAgtGgt55C.370.00058
ORF1ab/nsp3284S284GAgtGgt55P.1.170.000809
ORF1ab/nsp3284S284GAgtGgt44AY.3.10.000341
ORF1ab/nsp3284S284GAgtGgt44AY.390.000099
ORF1ab/nsp3284S284GAgtGgt44AY.450.000487
ORF1ab/nsp3284S284GAgtGgt44AY.50.000083
ORF1ab/nsp3284S284GAgtGgt44B.1.4530.012945
ORF1ab/nsp3284S284GAgtGgt33AY.1010.001471
ORF1ab/nsp3284S284GAgtGgt33AY.1090.002219
ORF1ab/nsp3284S284GAgtGgt33AY.1190.000106
ORF1ab/nsp3284S284GAgtGgt33AY.1200.000112
ORF1ab/nsp3284S284GAgtGgt33AY.270.000194
ORF1ab/nsp3284S284GAgtGgt33AY.4.50.000322
ORF1ab/nsp3284S284GAgtGgt33AY.620.001307
ORF1ab/nsp3284S284GAgtGgt33B.1.1.10.00098
ORF1ab/nsp3284S284GAgtGgt33B.1.1.1920.006928
ORF1ab/nsp3284S284GAgtGgt33B.1.1.3170.001235
ORF1ab/nsp3284S284GAgtGgt33B.1.360.000438
ORF1ab/nsp3284S284GAgtGgt22AY.1210.000271
ORF1ab/nsp3284S284GAgtGgt22AY.130.000322
ORF1ab/nsp3284S284GAgtGgt22AY.260.000057
ORF1ab/nsp3284S284GAgtGgt22AY.34.10.00102
ORF1ab/nsp3284S284GAgtGgt22AY.46.10.002053
ORF1ab/nsp3284S284GAgtGgt22AY.680.000547
ORF1ab/nsp3284S284GAgtGgt22AY.740.000231
ORF1ab/nsp3284S284GAgtGgt22B.1.1.1760.000879
ORF1ab/nsp3284S284GAgtGgt22B.1.1.570.022989
ORF1ab/nsp3284S284GAgtGgt22B.1.1570.00597
ORF1ab/nsp3284S284GAgtGgt22B.1.177.110.003396
ORF1ab/nsp3284S284GAgtGgt22B.1.177.330.003289
ORF1ab/nsp3284S284GAgtGgt22B.1.177.40.000422
ORF1ab/nsp3284S284GAgtGgt22B.1.177.730.001133
ORF1ab/nsp3284S284GAgtGgt22B.1.221.40.008333
ORF1ab/nsp3284S284GAgtGgt22B.1.575.10.004878
ORF1ab/nsp3284S284GAgtGgt22B.1.5960.000174
ORF1ab/nsp3284S284GAgtGgt22B.1.6190.001742
ORF1ab/nsp3284S284GAgtGgt22B.1.6210.000177
ORF1ab/nsp3284S284GAgtGgt22B.230.005848
ORF1ab/nsp3284S284GAgtGgt22N.50.003534
ORF1ab/nsp3284S284GAgtGgt22P.20.000373
ORF1ab/nsp3284S284GAgtGgt11AY.10.000396
ORF1ab/nsp3284S284GAgtGgt11AY.1110.000183
ORF1ab/nsp3284S284GAgtGgt11AY.1130.000142
ORF1ab/nsp3284S284GAgtGgt11AY.1170.000085
ORF1ab/nsp3284S284GAgtGgt11AY.29.10.000221
ORF1ab/nsp3284S284GAgtGgt11AY.540.000095
ORF1ab/nsp3284S284GAgtGgt11AY.60.000041
ORF1ab/nsp3284S284GAgtGgt11AY.600.000938
ORF1ab/nsp3284S284GAgtGgt11AY.790.001211
ORF1ab/nsp3284S284GAgtGgt11AY.840.000437
ORF1ab/nsp3284S284GAgtGgt11AZ.30.00152
ORF1ab/nsp3284S284GAgtGgt11B0.000128
ORF1ab/nsp3284S284GAgtGgt11B.1.1.2140.000055
ORF1ab/nsp3284S284GAgtGgt11B.1.1.2220.000204
ORF1ab/nsp3284S284GAgtGgt11B.1.1.3040.002809
ORF1ab/nsp3284S284GAgtGgt11B.1.1.3090.005848
ORF1ab/nsp3284S284GAgtGgt11B.1.1.3220.008772
ORF1ab/nsp3284S284GAgtGgt11B.1.1.3620.005618
ORF1ab/nsp3284S284GAgtGgt11B.1.1.370.000193
ORF1ab/nsp3284S284GAgtGgt11B.1.1.390.00051
ORF1ab/nsp3284S284GAgtGgt11B.1.1.5190.00004
ORF1ab/nsp3284S284GAgtGgt11B.1.1.5240.020833
ORF1ab/nsp3284S284GAgtGgt11B.1.1580.02381
ORF1ab/nsp3284S284GAgtGgt11B.1.160.140.002119
ORF1ab/nsp3284S284GAgtGgt11B.1.160.260.002421
ORF1ab/nsp3284S284GAgtGgt11B.1.177.420.000894
ORF1ab/nsp3284S284GAgtGgt11B.1.177.440.000519
ORF1ab/nsp3284S284GAgtGgt11B.1.177.570.000281
ORF1ab/nsp3284S284GAgtGgt11B.1.177.70.000165
ORF1ab/nsp3284S284GAgtGgt11B.1.177.790.002342
ORF1ab/nsp3284S284GAgtGgt11B.1.177.80.000752
ORF1ab/nsp3284S284GAgtGgt11B.1.177.830.001481
ORF1ab/nsp3284S284GAgtGgt11B.1.2360.002053
ORF1ab/nsp3284S284GAgtGgt11B.1.258.140.00098
ORF1ab/nsp3284S284GAgtGgt11B.1.3460.001311
ORF1ab/nsp3284S284GAgtGgt11B.1.351.50.0006
ORF1ab/nsp3284S284GAgtGgt11B.1.36.10.00114
ORF1ab/nsp3284S284GAgtGgt11B.1.36.180.00042
ORF1ab/nsp3284S284GAgtGgt11B.1.36.260.002857
ORF1ab/nsp3284S284GAgtGgt11B.1.3750.00082
ORF1ab/nsp3284S284GAgtGgt11B.1.4280.00102
ORF1ab/nsp3284S284GAgtGgt11B.1.466.20.000391
ORF1ab/nsp3284S284GAgtGgt11B.1.5610.000397
ORF1ab/nsp3284S284GAgtGgt11B.1.564.10.001577
ORF1ab/nsp3284S284GAgtGgt11B.1.5750.000303
ORF1ab/nsp3284S284GAgtGgt11B.1.5770.000687
ORF1ab/nsp3284S284GAgtGgt11B.1.5820.000491
ORF1ab/nsp3284S284GAgtGgt11B.1.617.10.000129
ORF1ab/nsp3284S284GAgtGgt11B.1.621.10.000506
ORF1ab/nsp3284S284GAgtGgt11B.1.6250.002353
ORF1ab/nsp3284S284GAgtGgt11B.400.000364
ORF1ab/nsp3284S284GAgtGgt11B.60.00091
ORF1ab/nsp3284S284GAgtGgt11P.1.120.000484
ORF1ab/nsp3284S284GAgtGgt11P.1.140.000048
ORF1ab/nsp3284S284GAgtGgt11P.1.160.000374
ORF1ab/nsp3284S284GAgtGgt11Q.80.000165

CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk

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