CoV-GLUEGenomeCountriesLineagesMutationsInsertionsDeletionsUpdated:

CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF1ab/nsp3 : CodonNum = 282 & Codon = ---

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF1ab/nsp3282G282delG1100deldelGGT---18118113563-3565

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF1ab/nsp3282G282delGGT---181181All0.000035
ORF1ab/nsp3282G282delGGT---2424P.10.000378
ORF1ab/nsp3282G282delGGT---2222P.1.150.005112
ORF1ab/nsp3282G282delGGT---2121B.1.1.70.000019
ORF1ab/nsp3282G282delGGT---1111B.10.000101
ORF1ab/nsp3282G282delGGT---1010P.1.120.00484
ORF1ab/nsp3282G282delGGT---55AY.40.000008
ORF1ab/nsp3282G282delGGT---55B.1.10.000091
ORF1ab/nsp3282G282delGGT---55B.1.6210.000443
ORF1ab/nsp3282G282delGGT---440.222222
ORF1ab/nsp3282G282delGGT---44B.1.20.000035
ORF1ab/nsp3282G282delGGT---44B.1.617.20.000015
ORF1ab/nsp3282G282delGGT---44C.370.000464
ORF1ab/nsp3282G282delGGT---33AY.1000.000138
ORF1ab/nsp3282G282delGGT---33AY.430.000013
ORF1ab/nsp3282G282delGGT---33P.1.140.000143
ORF1ab/nsp3282G282delGGT---22AY.390.000049
ORF1ab/nsp3282G282delGGT---22AY.420.00008
ORF1ab/nsp3282G282delGGT---22AY.90.000135
ORF1ab/nsp3282G282delGGT---22B.1.2430.000139
ORF1ab/nsp3282G282delGGT---22B.1.3510.000059
ORF1ab/nsp3282G282delGGT---22B.1.4290.000047
ORF1ab/nsp3282G282delGGT---22N.60.014184
ORF1ab/nsp3282G282delGGT---22P.1.70.000639
ORF1ab/nsp3282G282delGGT---11AY.1210.000135
ORF1ab/nsp3282G282delGGT---11AY.230.00007
ORF1ab/nsp3282G282delGGT---11AY.240.000431
ORF1ab/nsp3282G282delGGT---11AY.250.000006
ORF1ab/nsp3282G282delGGT---11AY.260.000028
ORF1ab/nsp3282G282delGGT---11AY.440.000006
ORF1ab/nsp3282G282delGGT---11AY.450.000122
ORF1ab/nsp3282G282delGGT---11AY.46.60.000072
ORF1ab/nsp3282G282delGGT---11AY.590.00053
ORF1ab/nsp3282G282delGGT---11AY.60.000041
ORF1ab/nsp3282G282delGGT---11AY.640.000595
ORF1ab/nsp3282G282delGGT---11AY.680.000274
ORF1ab/nsp3282G282delGGT---11AY.840.000437
ORF1ab/nsp3282G282delGGT---11AY.980.000079
ORF1ab/nsp3282G282delGGT---11AY.990.001049
ORF1ab/nsp3282G282delGGT---11AZ.20.000821
ORF1ab/nsp3282G282delGGT---11B.1.1.1370.0125
ORF1ab/nsp3282G282delGGT---11B.1.1.1740.003378
ORF1ab/nsp3282G282delGGT---11B.1.1.3060.000438
ORF1ab/nsp3282G282delGGT---11B.1.1.330.000421
ORF1ab/nsp3282G282delGGT---11B.1.1.3480.000796
ORF1ab/nsp3282G282delGGT---11B.1.1600.000031
ORF1ab/nsp3282G282delGGT---11B.1.1770.000013
ORF1ab/nsp3282G282delGGT---11B.1.2180.005155
ORF1ab/nsp3282G282delGGT---11B.1.2230.002778
ORF1ab/nsp3282G282delGGT---11B.1.360.000146
ORF1ab/nsp3282G282delGGT---11B.1.438.10.000107
ORF1ab/nsp3282G282delGGT---11B.1.5170.000427
ORF1ab/nsp3282G282delGGT---11B.1.5960.000087
ORF1ab/nsp3282G282delGGT---11B.1.617.10.000129
ORF1ab/nsp3282G282delGGT---11B.1.6270.00202
ORF1ab/nsp3282G282delGGT---11D.20.000075
ORF1ab/nsp3282G282delGGT---11P.1.10.000318
ORF1ab/nsp3282G282delGGT---11P.1.100.000269
ORF1ab/nsp3282G282delGGT---11P.1.130.000898
ORF1ab/nsp3282G282delGGT---11P.20.000187
ORF1ab/nsp3282G282delGGT---11Q.80.000165

CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk

CoV-GLUE uses sequence data from GISAID. GISAID data provided via this web application is subject to GISAID's Terms and Conditions.