CoV-GLUEGenomeCountriesLineagesMutationsInsertionsDeletionsUpdated:

CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF1ab/nsp3 : CodonNum = 274 & Codon = Act

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF1ab/nsp3274A274TA1092TnonsynGctAct51351313539-3541

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF1ab/nsp3274A274TGctAct513513All0.000098
ORF1ab/nsp3274A274TGctAct324324B.1.1.70.00029
ORF1ab/nsp3274A274TGctAct3131B.1.20.000273
ORF1ab/nsp3274A274TGctAct3131B.1.3930.885714
ORF1ab/nsp3274A274TGctAct1717B.10.000156
ORF1ab/nsp3274A274TGctAct1414AY.430.000062
ORF1ab/nsp3274A274TGctAct1212B.1.617.20.000045
ORF1ab/nsp3274A274TGctAct1010B.1.2390.01221
ORF1ab/nsp3274A274TGctAct88B.1.177.600.001747
ORF1ab/nsp3274A274TGctAct88B.1.4290.000188
ORF1ab/nsp3274A274TGctAct55B.1.2580.000333
ORF1ab/nsp3274A274TGctAct44AY.250.000024
ORF1ab/nsp3274A274TGctAct44P.10.000063
ORF1ab/nsp3274A274TGctAct33B.1.10.000054
ORF1ab/nsp3274A274TGctAct220.111111
ORF1ab/nsp3274A274TGctAct22AY.270.000129
ORF1ab/nsp3274A274TGctAct22AY.290.000032
ORF1ab/nsp3274A274TGctAct22AY.40.000003
ORF1ab/nsp3274A274TGctAct22B.1.1.1410.004024
ORF1ab/nsp3274A274TGctAct22B.1.177.120.000303
ORF1ab/nsp3274A274TGctAct22B.1.177.790.004684
ORF1ab/nsp3274A274TGctAct22B.1.177.810.000379
ORF1ab/nsp3274A274TGctAct22B.1.3510.000059
ORF1ab/nsp3274A274TGctAct22B.1.6390.043478
ORF1ab/nsp3274A274TGctAct11AY.1000.000046
ORF1ab/nsp3274A274TGctAct11AY.1020.000027
ORF1ab/nsp3274A274TGctAct11AY.1030.000006
ORF1ab/nsp3274A274TGctAct11AY.1170.000085
ORF1ab/nsp3274A274TGctAct11AY.120.000316
ORF1ab/nsp3274A274TGctAct11AY.30.00001
ORF1ab/nsp3274A274TGctAct11AY.460.000104
ORF1ab/nsp3274A274TGctAct11AY.570.000656
ORF1ab/nsp3274A274TGctAct11AY.610.000105
ORF1ab/nsp3274A274TGctAct11AY.620.000436
ORF1ab/nsp3274A274TGctAct11AY.90.000068
ORF1ab/nsp3274A274TGctAct11AY.980.000079
ORF1ab/nsp3274A274TGctAct11AY.98.10.000048
ORF1ab/nsp3274A274TGctAct11B.1.1.700.000341
ORF1ab/nsp3274A274TGctAct11B.1.177.70.000165
ORF1ab/nsp3274A274TGctAct11B.1.2060.000816
ORF1ab/nsp3274A274TGctAct11B.1.4000.000429
ORF1ab/nsp3274A274TGctAct11B.1.4250.002994
ORF1ab/nsp3274A274TGctAct11B.1.5260.000024
ORF1ab/nsp3274A274TGctAct11B.1.5950.000261
ORF1ab/nsp3274A274TGctAct11B.1.617.10.000129
ORF1ab/nsp3274A274TGctAct11P.1.140.000048

CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk

CoV-GLUE uses sequence data from GISAID. GISAID data provided via this web application is subject to GISAID's Terms and Conditions.