CoV-GLUE | Mutations | Mutation
Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):
ORF | CodonNum | Mut | ORF1abMut | MutType | RefCodon | MutCodon | AACount | CodonCount | CodonProp | Genome Position |
ORF1ab/nsp3 | 274 | A274V | A1092V | nonsyn | gCt | gTt | 1040 | 1039 | 0.999038 | 3539-3541 |
ORF1ab/nsp3 | 274 | A274V | A1092V | nonsyn | gCT | gTC | 1040 | 1 | 0.000961538 | 3539-3541 |
ORF1ab/nsp3 | 274 | A274A | A1092A | syn | gcT | gcG | 702 | 347 | 0.494302 | 3539-3541 |
ORF1ab/nsp3 | 274 | A274A | A1092A | syn | gcT | gcC | 702 | 330 | 0.470085 | 3539-3541 |
ORF1ab/nsp3 | 274 | A274A | A1092A | syn | gcT | gcA | 702 | 25 | 0.0356125 | 3539-3541 |
ORF1ab/nsp3 | 274 | A274T | A1092T | nonsyn | Gct | Act | 513 | 513 | 1 | 3539-3541 |
ORF1ab/nsp3 | 274 | A274S | A1092S | nonsyn | Gct | Tct | 482 | 478 | 0.991701 | 3539-3541 |
ORF1ab/nsp3 | 274 | A274S | A1092S | nonsyn | GCT | AGC | 482 | 2 | 0.00414938 | 3539-3541 |
ORF1ab/nsp3 | 274 | A274S | A1092S | nonsyn | GcT | TcG | 482 | 1 | 0.00207469 | 3539-3541 |
ORF1ab/nsp3 | 274 | A274S | A1092S | nonsyn | GcT | TcC | 482 | 1 | 0.00207469 | 3539-3541 |
ORF1ab/nsp3 | 274 | A274del | A1092del | del | GCT | --- | 180 | 180 | 1 | 3539-3541 |
ORF1ab/nsp3 | 274 | A274D | A1092D | nonsyn | gCt | gAt | 41 | 40 | 0.97561 | 3539-3541 |
ORF1ab/nsp3 | 274 | A274D | A1092D | nonsyn | gCT | gAC | 41 | 1 | 0.0243902 | 3539-3541 |
ORF1ab/nsp3 | 274 | A274E | A1092E | nonsyn | gCT | gAG | 12 | 12 | 1 | 3539-3541 |
ORF1ab/nsp3 | 274 | A274G | A1092G | nonsyn | gCT | gGA | 6 | 4 | 0.666667 | 3539-3541 |
ORF1ab/nsp3 | 274 | A274G | A1092G | nonsyn | gCt | gGt | 6 | 2 | 0.333333 | 3539-3541 |
ORF1ab/nsp3 | 274 | A274P | A1092P | nonsyn | Gct | Cct | 3 | 3 | 1 | 3539-3541 |
ORF1ab/nsp3 | 274 | A274del1 | A1092del1 | del | gcT | gc- | 3 | 2 | 0.666667 | 3539-3541 |
ORF1ab/nsp3 | 274 | A274del1 | A1092del1 | del | gCt | g-t | 3 | 1 | 0.333333 | 3539-3541 |
ORF1ab/nsp3 | 274 | A274H | A1092H | nonsyn | GCt | CAt | 1 | 1 | 1 | 3539-3541 |
ORF1ab/nsp3 | 274 | A274I | A1092I | nonsyn | GCt | ATt | 1 | 1 | 1 | 3539-3541 |
Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):
ORF | CodonNum | Mut | RefCodon | MutCodon | CodonCount | AACount | Lineage | LineageCodonProp |
ORF1ab/nsp3 | 274 | A274V | gCt | gTt | 1039 | 1040 | All | 0.000199 |
ORF1ab/nsp3 | 274 | A274V | gCT | gTC | 1 | 1040 | All | 0 |
ORF1ab/nsp3 | 274 | A274A | gcT | gcG | 347 | 702 | All | 0.000066 |
ORF1ab/nsp3 | 274 | A274A | gcT | gcC | 330 | 702 | All | 0.000063 |
ORF1ab/nsp3 | 274 | A274A | gcT | gcA | 25 | 702 | All | 0.000005 |
ORF1ab/nsp3 | 274 | A274T | Gct | Act | 513 | 513 | All | 0.000098 |
ORF1ab/nsp3 | 274 | A274S | Gct | Tct | 478 | 482 | All | 0.000091 |
ORF1ab/nsp3 | 274 | A274S | GCT | AGC | 2 | 482 | All | 0 |
ORF1ab/nsp3 | 274 | A274S | GcT | TcC | 1 | 482 | All | 0 |
ORF1ab/nsp3 | 274 | A274S | GcT | TcG | 1 | 482 | All | 0 |
ORF1ab/nsp3 | 274 | A274A | gcT | gcG | 333 | 470 | B.1.1.7 | 0.000298 |
ORF1ab/nsp3 | 274 | A274A | gcT | gcC | 134 | 470 | B.1.1.7 | 0.00012 |
ORF1ab/nsp3 | 274 | A274A | gcT | gcA | 3 | 470 | B.1.1.7 | 0.000003 |
ORF1ab/nsp3 | 274 | A274S | Gct | Tct | 428 | 428 | B.1.36.36 | 0.257676 |
ORF1ab/nsp3 | 274 | A274T | Gct | Act | 324 | 324 | B.1.1.7 | 0.00029 |
ORF1ab/nsp3 | 274 | A274del | GCT | --- | 180 | 180 | All | 0.000034 |
ORF1ab/nsp3 | 274 | A274V | gCt | gTt | 153 | 153 | B.1.1.7 | 0.000137 |
ORF1ab/nsp3 | 274 | A274V | gCt | gTt | 147 | 147 | AY.4 | 0.000229 |
ORF1ab/nsp3 | 274 | A274V | gCt | gTt | 117 | 117 | AY.43 | 0.000518 |
ORF1ab/nsp3 | 274 | A274V | gCt | gTt | 67 | 67 | AY.59 | 0.035487 |
ORF1ab/nsp3 | 274 | A274A | gcT | gcC | 46 | 46 | B.1.617.2 | 0.000173 |
ORF1ab/nsp3 | 274 | A274V | gCt | gTt | 45 | 45 | B.1 | 0.000412 |
ORF1ab/nsp3 | 274 | A274V | gCt | gTt | 44 | 44 | B.1.351 | 0.001308 |
ORF1ab/nsp3 | 274 | A274V | gCt | gTt | 42 | 42 | AY.20 | 0.001632 |
ORF1ab/nsp3 | 274 | A274D | gCt | gAt | 40 | 41 | All | 0.000008 |
ORF1ab/nsp3 | 274 | A274D | gCT | gAC | 1 | 41 | All | 0 |
ORF1ab/nsp3 | 274 | A274V | gCt | gTt | 33 | 33 | B.1.617.2 | 0.000124 |
ORF1ab/nsp3 | 274 | A274T | Gct | Act | 31 | 31 | B.1.2 | 0.000273 |
ORF1ab/nsp3 | 274 | A274T | Gct | Act | 31 | 31 | B.1.393 | 0.885714 |
ORF1ab/nsp3 | 274 | A274V | gCt | gTt | 27 | 27 | B.1.177.81 | 0.005112 |
ORF1ab/nsp3 | 274 | A274del | GCT | --- | 26 | 26 | B.1.1.7 | 0.000023 |
ORF1ab/nsp3 | 274 | A274V | gCt | gTt | 26 | 26 | B.1.160 | 0.000811 |
ORF1ab/nsp3 | 274 | A274A | gcT | gcC | 13 | 25 | AY.25 | 0.000078 |
ORF1ab/nsp3 | 274 | A274A | gcT | gcA | 12 | 25 | AY.25 | 0.000072 |
ORF1ab/nsp3 | 274 | A274V | gCt | gTt | 24 | 24 | AY.120 | 0.000892 |
ORF1ab/nsp3 | 274 | A274V | gCt | gTt | 24 | 24 | B.1.177 | 0.000316 |
ORF1ab/nsp3 | 274 | A274del | GCT | --- | 23 | 23 | P.1.15 | 0.005344 |
ORF1ab/nsp3 | 274 | A274V | gCt | gTt | 22 | 22 | AY.103 | 0.000137 |
ORF1ab/nsp3 | 274 | A274del | GCT | --- | 22 | 22 | P.1 | 0.000347 |
ORF1ab/nsp3 | 274 | A274A | gcT | gcC | 21 | 21 | AY.43 | 0.000093 |
ORF1ab/nsp3 | 274 | A274V | gCt | gTt | 21 | 21 | B.1.2 | 0.000185 |
ORF1ab/nsp3 | 274 | A274A | gcT | gcG | 12 | 19 | P.1 | 0.000189 |
ORF1ab/nsp3 | 274 | A274A | gcT | gcC | 7 | 19 | P.1 | 0.00011 |
ORF1ab/nsp3 | 274 | A274A | gcT | gcC | 18 | 18 | AY.20 | 0.0007 |
ORF1ab/nsp3 | 274 | A274V | gCt | gTt | 17 | 17 | AY.44 | 0.000103 |
ORF1ab/nsp3 | 274 | A274V | gCt | gTt | 17 | 17 | AY.47 | 0.000529 |
ORF1ab/nsp3 | 274 | A274T | Gct | Act | 17 | 17 | B.1 | 0.000156 |
ORF1ab/nsp3 | 274 | A274T | Gct | Act | 14 | 14 | AY.43 | 0.000062 |
ORF1ab/nsp3 | 274 | A274V | gCt | gTt | 14 | 14 | B.1.1 | 0.000254 |
ORF1ab/nsp3 | 274 | A274V | gCt | gTt | 13 | 13 | AY.3 | 0.000129 |
ORF1ab/nsp3 | 274 | A274E | gCT | gAG | 12 | 12 | All | 0.000002 |
ORF1ab/nsp3 | 274 | A274T | Gct | Act | 12 | 12 | B.1.617.2 | 0.000045 |
ORF1ab/nsp3 | 274 | A274E | gCT | gAG | 12 | 12 | P.1 | 0.000189 |
ORF1ab/nsp3 | 274 | A274del | GCT | --- | 11 | 11 | B.1 | 0.000101 |
ORF1ab/nsp3 | 274 | A274V | gCt | gTt | 11 | 11 | B.1.1.159 | 0.051402 |
ORF1ab/nsp3 | 274 | A274D | gCt | gAt | 10 | 11 | P.1 | 0.000158 |
ORF1ab/nsp3 | 274 | A274D | gCT | gAC | 1 | 11 | P.1 | 0.000016 |
ORF1ab/nsp3 | 274 | A274V | gCt | gTt | 10 | 10 | AY.26 | 0.000283 |
ORF1ab/nsp3 | 274 | A274V | gCt | gTt | 10 | 10 | AY.39.1 | 0.000396 |
ORF1ab/nsp3 | 274 | A274T | Gct | Act | 10 | 10 | B.1.239 | 0.01221 |
ORF1ab/nsp3 | 274 | A274del | GCT | --- | 10 | 10 | P.1.12 | 0.00484 |
ORF1ab/nsp3 | 274 | A274A | gcT | gcC | 9 | 9 | AY.44 | 0.000055 |
ORF1ab/nsp3 | 274 | A274A | gcT | gcC | 8 | 8 | AY.103 | 0.00005 |
ORF1ab/nsp3 | 274 | A274D | gCt | gAt | 8 | 8 | B.1.1.7 | 0.000007 |
ORF1ab/nsp3 | 274 | A274T | Gct | Act | 8 | 8 | B.1.177.60 | 0.001747 |
ORF1ab/nsp3 | 274 | A274V | gCt | gTt | 8 | 8 | B.1.234 | 0.001056 |
ORF1ab/nsp3 | 274 | A274T | Gct | Act | 8 | 8 | B.1.429 | 0.000188 |
ORF1ab/nsp3 | 274 | A274del | GCT | --- | 8 | 8 | B.1.621 | 0.000708 |
ORF1ab/nsp3 | 274 | A274V | gCt | gTt | 8 | 8 | P.1.4 | 0.007812 |
ORF1ab/nsp3 | 274 | A274A | gcT | gcC | 7 | 7 | AY.4 | 0.000011 |
ORF1ab/nsp3 | 274 | A274del | GCT | --- | 7 | 7 | B.1.2 | 0.000062 |
ORF1ab/nsp3 | 274 | A274G | gCT | gGA | 4 | 6 | All | 0.000001 |
ORF1ab/nsp3 | 274 | A274G | gCt | gGt | 2 | 6 | All | 0 |
ORF1ab/nsp3 | 274 | A274S | Gct | Tct | 6 | 6 | AY.4 | 0.000009 |
ORF1ab/nsp3 | 274 | A274V | gCt | gTt | 6 | 6 | AY.75.1 | 0.001082 |
ORF1ab/nsp3 | 274 | A274V | gCt | gTt | 6 | 6 | AY.79 | 0.007264 |
ORF1ab/nsp3 | 274 | A274V | gCt | gTt | 6 | 6 | B | 0.000767 |
ORF1ab/nsp3 | 274 | A274V | gCt | gTt | 6 | 6 | B.1.466.2 | 0.002347 |
ORF1ab/nsp3 | 274 | A274V | gCt | gTt | 6 | 6 | B.1.526 | 0.000141 |
ORF1ab/nsp3 | 274 | A274V | gCt | gTt | 5 | 5 | AY.14 | 0.00044 |
ORF1ab/nsp3 | 274 | A274A | gcT | gcC | 5 | 5 | AY.3 | 0.00005 |
ORF1ab/nsp3 | 274 | A274del | GCT | --- | 5 | 5 | B.1.1 | 0.000091 |
ORF1ab/nsp3 | 274 | A274A | gcT | gcC | 5 | 5 | B.1.243 | 0.000348 |
ORF1ab/nsp3 | 274 | A274T | Gct | Act | 5 | 5 | B.1.258 | 0.000333 |
ORF1ab/nsp3 | 274 | A274S | Gct | Tct | 5 | 5 | B.1.617.2 | 0.000019 |
ORF1ab/nsp3 | 274 | A274del | GCT | --- | 5 | 5 | C.37 | 0.00058 |
ORF1ab/nsp3 | 274 | A274V | gCt | gTt | 5 | 5 | P.1 | 0.000079 |
ORF1ab/nsp3 | 274 | A274G | gCt | gGt | 2 | 4 | 0.111111 | |
ORF1ab/nsp3 | 274 | A274G | gCT | gGA | 2 | 4 | 0.111111 | |
ORF1ab/nsp3 | 274 | A274T | Gct | Act | 4 | 4 | AY.25 | 0.000024 |
ORF1ab/nsp3 | 274 | A274D | gCt | gAt | 4 | 4 | AY.4 | 0.000006 |
ORF1ab/nsp3 | 274 | A274del | GCT | --- | 4 | 4 | AY.43 | 0.000018 |
ORF1ab/nsp3 | 274 | A274V | gCt | gTt | 4 | 4 | AY.5 | 0.000083 |
ORF1ab/nsp3 | 274 | A274V | gCt | gTt | 4 | 4 | AY.74 | 0.000463 |
ORF1ab/nsp3 | 274 | A274V | gCt | gTt | 4 | 4 | B.1.206 | 0.003263 |
ORF1ab/nsp3 | 274 | A274A | gcT | gcA | 4 | 4 | B.1.351 | 0.000119 |
ORF1ab/nsp3 | 274 | A274S | Gct | Tct | 4 | 4 | B.1.427 | 0.000202 |
ORF1ab/nsp3 | 274 | A274A | gcT | gcC | 4 | 4 | B.1.429 | 0.000094 |
ORF1ab/nsp3 | 274 | A274V | gCt | gTt | 4 | 4 | B.1.525 | 0.000453 |
ORF1ab/nsp3 | 274 | A274T | Gct | Act | 4 | 4 | P.1 | 0.000063 |
ORF1ab/nsp3 | 274 | A274P | Gct | Cct | 3 | 3 | All | 0.000001 |
ORF1ab/nsp3 | 274 | A274del1 | gcT | gc- | 2 | 3 | All | 0 |
ORF1ab/nsp3 | 274 | A274del1 | gCt | g-t | 1 | 3 | All | 0 |
ORF1ab/nsp3 | 274 | A274del | GCT | --- | 3 | 3 | AY.100 | 0.000138 |
ORF1ab/nsp3 | 274 | A274V | gCt | gTt | 3 | 3 | AY.23 | 0.000209 |
ORF1ab/nsp3 | 274 | A274A | gcT | gcC | 3 | 3 | AY.23 | 0.000209 |
ORF1ab/nsp3 | 274 | A274V | gCt | gTt | 3 | 3 | AY.29 | 0.000047 |
ORF1ab/nsp3 | 274 | A274A | gcT | gcC | 3 | 3 | AY.39 | 0.000074 |
ORF1ab/nsp3 | 274 | A274V | gCt | gTt | 3 | 3 | AY.4.5 | 0.000322 |
ORF1ab/nsp3 | 274 | A274A | gcT | gcC | 3 | 3 | AY.5 | 0.000062 |
ORF1ab/nsp3 | 274 | A274V | gCt | gTt | 3 | 3 | AY.9.1 | 0.000251 |
ORF1ab/nsp3 | 274 | A274A | gcT | gcC | 3 | 3 | AY.99.2 | 0.000276 |
ORF1ab/nsp3 | 274 | A274S | Gct | Tct | 3 | 3 | B.1 | 0.000027 |
ORF1ab/nsp3 | 274 | A274A | gcT | gcC | 3 | 3 | B.1 | 0.000027 |
ORF1ab/nsp3 | 274 | A274D | gCt | gAt | 3 | 3 | B.1 | 0.000027 |
ORF1ab/nsp3 | 274 | A274T | Gct | Act | 3 | 3 | B.1.1 | 0.000054 |
ORF1ab/nsp3 | 274 | A274S | Gct | Tct | 3 | 3 | B.1.1.7 | 0.000003 |
ORF1ab/nsp3 | 274 | A274A | gcT | gcC | 3 | 3 | B.1.279 | 0.001541 |
ORF1ab/nsp3 | 274 | A274S | Gct | Tct | 3 | 3 | B.1.36 | 0.000438 |
ORF1ab/nsp3 | 274 | A274D | gCt | gAt | 3 | 3 | B.1.525 | 0.000339 |
ORF1ab/nsp3 | 274 | A274del | GCT | --- | 3 | 3 | B.1.617.2 | 0.000011 |
ORF1ab/nsp3 | 274 | A274D | gCt | gAt | 3 | 3 | B.1.617.2 | 0.000011 |
ORF1ab/nsp3 | 274 | A274A | gcT | gcC | 3 | 3 | B.1.621 | 0.000266 |
ORF1ab/nsp3 | 274 | A274V | gCt | gTt | 3 | 3 | P.1.14 | 0.000143 |
ORF1ab/nsp3 | 274 | A274del | GCT | --- | 3 | 3 | P.1.14 | 0.000143 |
ORF1ab/nsp3 | 274 | A274del | GCT | --- | 3 | 3 | P.1.7 | 0.000958 |
ORF1ab/nsp3 | 274 | A274T | Gct | Act | 2 | 2 | 0.111111 | |
ORF1ab/nsp3 | 274 | A274A | gcT | gcC | 2 | 2 | AY.102 | 0.000053 |
ORF1ab/nsp3 | 274 | A274V | gCt | gTt | 2 | 2 | AY.102 | 0.000053 |
ORF1ab/nsp3 | 274 | A274S | Gct | Tct | 2 | 2 | AY.103 | 0.000012 |
ORF1ab/nsp3 | 274 | A274S | Gct | Tct | 2 | 2 | AY.114 | 0.000462 |
ORF1ab/nsp3 | 274 | A274V | gCt | gTt | 2 | 2 | AY.119 | 0.000071 |
ORF1ab/nsp3 | 274 | A274S | Gct | Tct | 2 | 2 | AY.25 | 0.000012 |
ORF1ab/nsp3 | 274 | A274T | Gct | Act | 2 | 2 | AY.27 | 0.000129 |
ORF1ab/nsp3 | 274 | A274T | Gct | Act | 2 | 2 | AY.29 | 0.000032 |
ORF1ab/nsp3 | 274 | A274A | gcT | gcA | 2 | 2 | AY.33 | 0.000134 |
ORF1ab/nsp3 | 274 | A274V | gCt | gTt | 2 | 2 | AY.33 | 0.000134 |
ORF1ab/nsp3 | 274 | A274del | GCT | --- | 2 | 2 | AY.4 | 0.000003 |
ORF1ab/nsp3 | 274 | A274T | Gct | Act | 2 | 2 | AY.4 | 0.000003 |
ORF1ab/nsp3 | 274 | A274V | gCt | gTt | 2 | 2 | AY.42 | 0.00008 |
ORF1ab/nsp3 | 274 | A274del | GCT | --- | 2 | 2 | AY.42 | 0.00008 |
ORF1ab/nsp3 | 274 | A274V | gCt | gTt | 2 | 2 | AY.45 | 0.000243 |
ORF1ab/nsp3 | 274 | A274V | gCt | gTt | 2 | 2 | AY.46 | 0.000208 |
ORF1ab/nsp3 | 274 | A274V | gCt | gTt | 2 | 2 | AY.54 | 0.000191 |
ORF1ab/nsp3 | 274 | A274del | GCT | --- | 2 | 2 | AY.9 | 0.000135 |
ORF1ab/nsp3 | 274 | A274A | gcT | gcA | 1 | 2 | B.1.1 | 0.000018 |
ORF1ab/nsp3 | 274 | A274A | gcT | gcC | 1 | 2 | B.1.1 | 0.000018 |
ORF1ab/nsp3 | 274 | A274T | Gct | Act | 2 | 2 | B.1.1.141 | 0.004024 |
ORF1ab/nsp3 | 274 | A274S | Gct | Tct | 2 | 2 | B.1.1.25 | 0.001137 |
ORF1ab/nsp3 | 274 | A274V | gCt | gTt | 2 | 2 | B.1.1.265 | 0.006309 |
ORF1ab/nsp3 | 274 | A274V | gCt | gTt | 2 | 2 | B.1.1.519 | 0.000079 |
ORF1ab/nsp3 | 274 | A274G | gCT | gGA | 2 | 2 | B.1.1.7 | 0.000002 |
ORF1ab/nsp3 | 274 | A274del1 | gCt | g-t | 1 | 2 | B.1.1.7 | 0.000001 |
ORF1ab/nsp3 | 274 | A274del1 | gcT | gc- | 1 | 2 | B.1.1.7 | 0.000001 |
ORF1ab/nsp3 | 274 | A274V | gCt | gTt | 2 | 2 | B.1.1.70 | 0.000682 |
ORF1ab/nsp3 | 274 | A274T | Gct | Act | 2 | 2 | B.1.177.12 | 0.000303 |
ORF1ab/nsp3 | 274 | A274T | Gct | Act | 2 | 2 | B.1.177.79 | 0.004684 |
ORF1ab/nsp3 | 274 | A274T | Gct | Act | 2 | 2 | B.1.177.81 | 0.000379 |
ORF1ab/nsp3 | 274 | A274del | GCT | --- | 2 | 2 | B.1.243 | 0.000139 |
ORF1ab/nsp3 | 274 | A274T | Gct | Act | 2 | 2 | B.1.351 | 0.000059 |
ORF1ab/nsp3 | 274 | A274V | gCt | gTt | 1 | 2 | B.1.36 | 0.000146 |
ORF1ab/nsp3 | 274 | A274V | gCT | gTC | 1 | 2 | B.1.36 | 0.000146 |
ORF1ab/nsp3 | 274 | A274del | GCT | --- | 2 | 2 | B.1.429 | 0.000047 |
ORF1ab/nsp3 | 274 | A274A | gcT | gcC | 2 | 2 | B.1.438.1 | 0.000215 |
ORF1ab/nsp3 | 274 | A274V | gCt | gTt | 2 | 2 | B.1.564 | 0.000852 |
ORF1ab/nsp3 | 274 | A274V | gCt | gTt | 2 | 2 | B.1.609 | 0.000959 |
ORF1ab/nsp3 | 274 | A274T | Gct | Act | 2 | 2 | B.1.639 | 0.043478 |
ORF1ab/nsp3 | 274 | A274S | Gct | Tct | 2 | 2 | B.40 | 0.000729 |
ORF1ab/nsp3 | 274 | A274del | GCT | --- | 2 | 2 | N.6 | 0.014184 |
ORF1ab/nsp3 | 274 | A274S | GCT | AGC | 1 | 2 | P.1 | 0.000016 |
ORF1ab/nsp3 | 274 | A274S | Gct | Tct | 1 | 2 | P.1 | 0.000016 |
ORF1ab/nsp3 | 274 | A274V | gCt | gTt | 1 | 1 | A.2.2 | 0.001689 |
ORF1ab/nsp3 | 274 | A274I | GCt | ATt | 1 | 1 | All | 0 |
ORF1ab/nsp3 | 274 | A274H | GCt | CAt | 1 | 1 | All | 0 |
ORF1ab/nsp3 | 274 | A274A | gcT | gcC | 1 | 1 | AY.1 | 0.000396 |
ORF1ab/nsp3 | 274 | A274T | Gct | Act | 1 | 1 | AY.100 | 0.000046 |
ORF1ab/nsp3 | 274 | A274V | gCt | gTt | 1 | 1 | AY.100 | 0.000046 |
ORF1ab/nsp3 | 274 | A274T | Gct | Act | 1 | 1 | AY.102 | 0.000027 |
ORF1ab/nsp3 | 274 | A274T | Gct | Act | 1 | 1 | AY.103 | 0.000006 |
ORF1ab/nsp3 | 274 | A274V | gCt | gTt | 1 | 1 | AY.106 | 0.000335 |
ORF1ab/nsp3 | 274 | A274S | Gct | Tct | 1 | 1 | AY.107 | 0.000466 |
ORF1ab/nsp3 | 274 | A274del | GCT | --- | 1 | 1 | AY.11 | 0.001339 |
ORF1ab/nsp3 | 274 | A274S | Gct | Tct | 1 | 1 | AY.113 | 0.000142 |
ORF1ab/nsp3 | 274 | A274V | gCt | gTt | 1 | 1 | AY.115 | 0.005208 |
ORF1ab/nsp3 | 274 | A274A | gcT | gcC | 1 | 1 | AY.117 | 0.000085 |
ORF1ab/nsp3 | 274 | A274T | Gct | Act | 1 | 1 | AY.117 | 0.000085 |
ORF1ab/nsp3 | 274 | A274del | GCT | --- | 1 | 1 | AY.118 | 0.000063 |
ORF1ab/nsp3 | 274 | A274S | Gct | Tct | 1 | 1 | AY.118 | 0.000063 |
ORF1ab/nsp3 | 274 | A274T | Gct | Act | 1 | 1 | AY.12 | 0.000316 |
ORF1ab/nsp3 | 274 | A274del | GCT | --- | 1 | 1 | AY.121 | 0.000135 |
ORF1ab/nsp3 | 274 | A274V | gCt | gTt | 1 | 1 | AY.13 | 0.000161 |
ORF1ab/nsp3 | 274 | A274V | gCt | gTt | 1 | 1 | AY.16.1 | 0.00047 |
ORF1ab/nsp3 | 274 | A274A | gcT | gcC | 1 | 1 | AY.16.1 | 0.00047 |
ORF1ab/nsp3 | 274 | A274D | gCt | gAt | 1 | 1 | AY.20 | 0.000039 |
ORF1ab/nsp3 | 274 | A274S | Gct | Tct | 1 | 1 | AY.20 | 0.000039 |
ORF1ab/nsp3 | 274 | A274del | GCT | --- | 1 | 1 | AY.23 | 0.00007 |
ORF1ab/nsp3 | 274 | A274del | GCT | --- | 1 | 1 | AY.24 | 0.000431 |
ORF1ab/nsp3 | 274 | A274del | GCT | --- | 1 | 1 | AY.25 | 0.000006 |
ORF1ab/nsp3 | 274 | A274V | gCt | gTt | 1 | 1 | AY.25 | 0.000006 |
ORF1ab/nsp3 | 274 | A274A | gcT | gcC | 1 | 1 | AY.26 | 0.000028 |
ORF1ab/nsp3 | 274 | A274del | GCT | --- | 1 | 1 | AY.26 | 0.000028 |
ORF1ab/nsp3 | 274 | A274S | Gct | Tct | 1 | 1 | AY.29.1 | 0.000221 |
ORF1ab/nsp3 | 274 | A274T | Gct | Act | 1 | 1 | AY.3 | 0.00001 |
ORF1ab/nsp3 | 274 | A274D | gCt | gAt | 1 | 1 | AY.34 | 0.000097 |
ORF1ab/nsp3 | 274 | A274D | gCt | gAt | 1 | 1 | AY.38 | 0.000499 |
ORF1ab/nsp3 | 274 | A274V | gCt | gTt | 1 | 1 | AY.4.2 | 0.000022 |
ORF1ab/nsp3 | 274 | A274A | gcT | gcC | 1 | 1 | AY.4.2 | 0.000022 |
ORF1ab/nsp3 | 274 | A274P | Gct | Cct | 1 | 1 | AY.4.2 | 0.000022 |
ORF1ab/nsp3 | 274 | A274A | gcT | gcC | 1 | 1 | AY.4.4 | 0.000409 |
ORF1ab/nsp3 | 274 | A274A | gcT | gcC | 1 | 1 | AY.4.5 | 0.000107 |
ORF1ab/nsp3 | 274 | A274A | gcT | gcC | 1 | 1 | AY.40 | 0.000964 |
ORF1ab/nsp3 | 274 | A274D | gCt | gAt | 1 | 1 | AY.44 | 0.000006 |
ORF1ab/nsp3 | 274 | A274del | GCT | --- | 1 | 1 | AY.45 | 0.000122 |
ORF1ab/nsp3 | 274 | A274A | gcT | gcC | 1 | 1 | AY.46 | 0.000104 |
ORF1ab/nsp3 | 274 | A274T | Gct | Act | 1 | 1 | AY.46 | 0.000104 |
ORF1ab/nsp3 | 274 | A274A | gcT | gcC | 1 | 1 | AY.46.6 | 0.000072 |
ORF1ab/nsp3 | 274 | A274A | gcT | gcC | 1 | 1 | AY.47 | 0.000031 |
ORF1ab/nsp3 | 274 | A274T | Gct | Act | 1 | 1 | AY.57 | 0.000656 |
ORF1ab/nsp3 | 274 | A274A | gcT | gcC | 1 | 1 | AY.58 | 0.000907 |
ORF1ab/nsp3 | 274 | A274del | GCT | --- | 1 | 1 | AY.59 | 0.00053 |
ORF1ab/nsp3 | 274 | A274S | Gct | Tct | 1 | 1 | AY.6 | 0.000041 |
ORF1ab/nsp3 | 274 | A274V | gCt | gTt | 1 | 1 | AY.61 | 0.000105 |
ORF1ab/nsp3 | 274 | A274T | Gct | Act | 1 | 1 | AY.61 | 0.000105 |
ORF1ab/nsp3 | 274 | A274T | Gct | Act | 1 | 1 | AY.62 | 0.000436 |
ORF1ab/nsp3 | 274 | A274V | gCt | gTt | 1 | 1 | AY.62 | 0.000436 |
ORF1ab/nsp3 | 274 | A274V | gCt | gTt | 1 | 1 | AY.63 | 0.000387 |
ORF1ab/nsp3 | 274 | A274V | gCt | gTt | 1 | 1 | AY.67 | 0.000464 |
ORF1ab/nsp3 | 274 | A274del | GCT | --- | 1 | 1 | AY.68 | 0.000274 |
ORF1ab/nsp3 | 274 | A274A | gcT | gcC | 1 | 1 | AY.69 | 0.000187 |
ORF1ab/nsp3 | 274 | A274V | gCt | gTt | 1 | 1 | AY.70 | 0.000209 |
ORF1ab/nsp3 | 274 | A274V | gCt | gTt | 1 | 1 | AY.76 | 0.004831 |
ORF1ab/nsp3 | 274 | A274del | GCT | --- | 1 | 1 | AY.84 | 0.000437 |
ORF1ab/nsp3 | 274 | A274T | Gct | Act | 1 | 1 | AY.9 | 0.000068 |
ORF1ab/nsp3 | 274 | A274A | gcT | gcC | 1 | 1 | AY.9.1 | 0.000084 |
ORF1ab/nsp3 | 274 | A274A | gcT | gcC | 1 | 1 | AY.92 | 0.000287 |
ORF1ab/nsp3 | 274 | A274V | gCt | gTt | 1 | 1 | AY.93 | 0.000273 |
ORF1ab/nsp3 | 274 | A274V | gCt | gTt | 1 | 1 | AY.96 | 0.002075 |
ORF1ab/nsp3 | 274 | A274V | gCt | gTt | 1 | 1 | AY.98 | 0.000079 |
ORF1ab/nsp3 | 274 | A274T | Gct | Act | 1 | 1 | AY.98 | 0.000079 |
ORF1ab/nsp3 | 274 | A274T | Gct | Act | 1 | 1 | AY.98.1 | 0.000048 |
ORF1ab/nsp3 | 274 | A274A | gcT | gcC | 1 | 1 | AY.98.1 | 0.000048 |
ORF1ab/nsp3 | 274 | A274V | gCt | gTt | 1 | 1 | AY.98.1 | 0.000048 |
ORF1ab/nsp3 | 274 | A274del | GCT | --- | 1 | 1 | AY.99 | 0.001049 |
ORF1ab/nsp3 | 274 | A274V | gCt | gTt | 1 | 1 | AY.99.2 | 0.000092 |
ORF1ab/nsp3 | 274 | A274del | GCT | --- | 1 | 1 | AZ.2 | 0.000821 |
ORF1ab/nsp3 | 274 | A274S | Gct | Tct | 1 | 1 | B.1.1 | 0.000018 |
ORF1ab/nsp3 | 274 | A274del | GCT | --- | 1 | 1 | B.1.1.174 | 0.003378 |
ORF1ab/nsp3 | 274 | A274V | gCt | gTt | 1 | 1 | B.1.1.229 | 0.005747 |
ORF1ab/nsp3 | 274 | A274V | gCt | gTt | 1 | 1 | B.1.1.26 | 0.005236 |
ORF1ab/nsp3 | 274 | A274A | gcT | gcA | 1 | 1 | B.1.1.28 | 0.000311 |
ORF1ab/nsp3 | 274 | A274V | gCt | gTt | 1 | 1 | B.1.1.280 | 0.003086 |
ORF1ab/nsp3 | 274 | A274V | gCt | gTt | 1 | 1 | B.1.1.284 | 0.000107 |
ORF1ab/nsp3 | 274 | A274S | GcT | TcC | 1 | 1 | B.1.1.306 | 0.000438 |
ORF1ab/nsp3 | 274 | A274del | GCT | --- | 1 | 1 | B.1.1.306 | 0.000438 |
ORF1ab/nsp3 | 274 | A274del | GCT | --- | 1 | 1 | B.1.1.33 | 0.000421 |
ORF1ab/nsp3 | 274 | A274del | GCT | --- | 1 | 1 | B.1.1.348 | 0.000796 |
ORF1ab/nsp3 | 274 | A274V | gCt | gTt | 1 | 1 | B.1.1.348 | 0.000796 |
ORF1ab/nsp3 | 274 | A274V | gCt | gTt | 1 | 1 | B.1.1.368 | 0.003086 |
ORF1ab/nsp3 | 274 | A274V | gCt | gTt | 1 | 1 | B.1.1.369 | 0.000446 |
ORF1ab/nsp3 | 274 | A274S | Gct | Tct | 1 | 1 | B.1.1.37 | 0.000193 |
ORF1ab/nsp3 | 274 | A274P | Gct | Cct | 1 | 1 | B.1.1.411 | 0.014706 |
ORF1ab/nsp3 | 274 | A274V | gCt | gTt | 1 | 1 | B.1.1.432 | 0.001266 |
ORF1ab/nsp3 | 274 | A274V | gCt | gTt | 1 | 1 | B.1.1.434 | 0.000349 |
ORF1ab/nsp3 | 274 | A274A | gcT | gcC | 1 | 1 | B.1.1.519 | 0.00004 |
ORF1ab/nsp3 | 274 | A274I | GCt | ATt | 1 | 1 | B.1.1.7 | 0.000001 |
ORF1ab/nsp3 | 274 | A274P | Gct | Cct | 1 | 1 | B.1.1.7 | 0.000001 |
ORF1ab/nsp3 | 274 | A274T | Gct | Act | 1 | 1 | B.1.1.70 | 0.000341 |
ORF1ab/nsp3 | 274 | A274V | gCt | gTt | 1 | 1 | B.1.1.95 | 0.019608 |
ORF1ab/nsp3 | 274 | A274A | gcT | gcC | 1 | 1 | B.1.126 | 0.001276 |
ORF1ab/nsp3 | 274 | A274del | GCT | --- | 1 | 1 | B.1.157 | 0.002985 |
ORF1ab/nsp3 | 274 | A274V | gCt | gTt | 1 | 1 | B.1.157 | 0.002985 |
ORF1ab/nsp3 | 274 | A274S | Gct | Tct | 1 | 1 | B.1.157 | 0.002985 |
ORF1ab/nsp3 | 274 | A274A | gcT | gcC | 1 | 1 | B.1.160 | 0.000031 |
ORF1ab/nsp3 | 274 | A274A | gcT | gcC | 1 | 1 | B.1.177 | 0.000013 |
ORF1ab/nsp3 | 274 | A274del | GCT | --- | 1 | 1 | B.1.177 | 0.000013 |
ORF1ab/nsp3 | 274 | A274D | gCt | gAt | 1 | 1 | B.1.177.58 | 0.001332 |
ORF1ab/nsp3 | 274 | A274T | Gct | Act | 1 | 1 | B.1.177.7 | 0.000165 |
ORF1ab/nsp3 | 274 | A274S | GcT | TcG | 1 | 1 | B.1.177.73 | 0.000566 |
ORF1ab/nsp3 | 274 | A274A | gcT | gcC | 1 | 1 | B.1.177.73 | 0.000566 |
ORF1ab/nsp3 | 274 | A274S | Gct | Tct | 1 | 1 | B.1.177.81 | 0.000189 |
ORF1ab/nsp3 | 274 | A274V | gCt | gTt | 1 | 1 | B.1.177.86 | 0.000183 |
ORF1ab/nsp3 | 274 | A274A | gcT | gcA | 1 | 1 | B.1.177.9 | 0.001332 |
ORF1ab/nsp3 | 274 | A274D | gCt | gAt | 1 | 1 | B.1.2 | 0.000009 |
ORF1ab/nsp3 | 274 | A274T | Gct | Act | 1 | 1 | B.1.206 | 0.000816 |
ORF1ab/nsp3 | 274 | A274del1 | gcT | gc- | 1 | 1 | B.1.206 | 0.000816 |
ORF1ab/nsp3 | 274 | A274del | GCT | --- | 1 | 1 | B.1.218 | 0.005155 |
ORF1ab/nsp3 | 274 | A274del | GCT | --- | 1 | 1 | B.1.223 | 0.002778 |
ORF1ab/nsp3 | 274 | A274V | gCt | gTt | 1 | 1 | B.1.240 | 0.000216 |
ORF1ab/nsp3 | 274 | A274V | gCt | gTt | 1 | 1 | B.1.324 | 0.001605 |
ORF1ab/nsp3 | 274 | A274A | gcT | gcC | 1 | 1 | B.1.344 | 0.008197 |
ORF1ab/nsp3 | 274 | A274del | GCT | --- | 1 | 1 | B.1.351 | 0.00003 |
ORF1ab/nsp3 | 274 | A274V | gCt | gTt | 1 | 1 | B.1.351.1 | 0.038462 |
ORF1ab/nsp3 | 274 | A274A | gcT | gcA | 1 | 1 | B.1.351.3 | 0.000876 |
ORF1ab/nsp3 | 274 | A274del | GCT | --- | 1 | 1 | B.1.36 | 0.000146 |
ORF1ab/nsp3 | 274 | A274S | Gct | Tct | 1 | 1 | B.1.36.1 | 0.00114 |
ORF1ab/nsp3 | 274 | A274D | gCt | gAt | 1 | 1 | B.1.36.29 | 0.000517 |
ORF1ab/nsp3 | 274 | A274D | gCt | gAt | 1 | 1 | B.1.367 | 0.000792 |
ORF1ab/nsp3 | 274 | A274V | gCt | gTt | 1 | 1 | B.1.396 | 0.000706 |
ORF1ab/nsp3 | 274 | A274T | Gct | Act | 1 | 1 | B.1.400 | 0.000429 |
ORF1ab/nsp3 | 274 | A274T | Gct | Act | 1 | 1 | B.1.425 | 0.002994 |
ORF1ab/nsp3 | 274 | A274V | gCt | gTt | 1 | 1 | B.1.428 | 0.00102 |
ORF1ab/nsp3 | 274 | A274V | gCt | gTt | 1 | 1 | B.1.456 | 0.003268 |
ORF1ab/nsp3 | 274 | A274A | gcT | gcG | 1 | 1 | B.1.462 | 0.007246 |
ORF1ab/nsp3 | 274 | A274A | gcT | gcC | 1 | 1 | B.1.517 | 0.000427 |
ORF1ab/nsp3 | 274 | A274del | GCT | --- | 1 | 1 | B.1.517 | 0.000427 |
ORF1ab/nsp3 | 274 | A274V | gCt | gTt | 1 | 1 | B.1.524 | 0.001406 |
ORF1ab/nsp3 | 274 | A274del | GCT | --- | 1 | 1 | B.1.526 | 0.000024 |
ORF1ab/nsp3 | 274 | A274T | Gct | Act | 1 | 1 | B.1.526 | 0.000024 |
ORF1ab/nsp3 | 274 | A274S | Gct | Tct | 1 | 1 | B.1.590 | 0.004545 |
ORF1ab/nsp3 | 274 | A274T | Gct | Act | 1 | 1 | B.1.595 | 0.000261 |
ORF1ab/nsp3 | 274 | A274V | gCt | gTt | 1 | 1 | B.1.595 | 0.000261 |
ORF1ab/nsp3 | 274 | A274del | GCT | --- | 1 | 1 | B.1.596 | 0.000087 |
ORF1ab/nsp3 | 274 | A274A | gcT | gcG | 1 | 1 | B.1.609 | 0.000479 |
ORF1ab/nsp3 | 274 | A274del | GCT | --- | 1 | 1 | B.1.617.1 | 0.000129 |
ORF1ab/nsp3 | 274 | A274V | gCt | gTt | 1 | 1 | B.1.617.1 | 0.000129 |
ORF1ab/nsp3 | 274 | A274T | Gct | Act | 1 | 1 | B.1.617.1 | 0.000129 |
ORF1ab/nsp3 | 274 | A274D | gCt | gAt | 1 | 1 | B.1.617.1 | 0.000129 |
ORF1ab/nsp3 | 274 | A274H | GCt | CAt | 1 | 1 | B.1.617.2 | 0.000004 |
ORF1ab/nsp3 | 274 | A274del | GCT | --- | 1 | 1 | B.1.621.1 | 0.000506 |
ORF1ab/nsp3 | 274 | A274S | Gct | Tct | 1 | 1 | B.1.621.1 | 0.000506 |
ORF1ab/nsp3 | 274 | A274del | GCT | --- | 1 | 1 | B.1.627 | 0.00202 |
ORF1ab/nsp3 | 274 | A274V | gCt | gTt | 1 | 1 | B.1.636 | 0.006711 |
ORF1ab/nsp3 | 274 | A274V | gCt | gTt | 1 | 1 | B.40 | 0.000364 |
ORF1ab/nsp3 | 274 | A274A | gcT | gcC | 1 | 1 | B.55 | 0.00295 |
ORF1ab/nsp3 | 274 | A274S | Gct | Tct | 1 | 1 | C.18 | 0.002591 |
ORF1ab/nsp3 | 274 | A274S | Gct | Tct | 1 | 1 | C.37 | 0.000116 |
ORF1ab/nsp3 | 274 | A274del | GCT | --- | 1 | 1 | D.2 | 0.000075 |
ORF1ab/nsp3 | 274 | A274A | gcT | gcC | 1 | 1 | D.2 | 0.000075 |
ORF1ab/nsp3 | 274 | A274del | GCT | --- | 1 | 1 | P.1.1 | 0.000318 |
ORF1ab/nsp3 | 274 | A274A | gcT | gcC | 1 | 1 | P.1.10 | 0.000269 |
ORF1ab/nsp3 | 274 | A274del | GCT | --- | 1 | 1 | P.1.10 | 0.000269 |
ORF1ab/nsp3 | 274 | A274del | GCT | --- | 1 | 1 | P.1.13 | 0.000898 |
ORF1ab/nsp3 | 274 | A274T | Gct | Act | 1 | 1 | P.1.14 | 0.000048 |
ORF1ab/nsp3 | 274 | A274S | GCT | AGC | 1 | 1 | P.1.17 | 0.000162 |
ORF1ab/nsp3 | 274 | A274del | GCT | --- | 1 | 1 | P.2 | 0.000187 |
ORF1ab/nsp3 | 274 | A274A | gcT | gcC | 1 | 1 | P.7 | 0.004367 |
ORF1ab/nsp3 | 274 | A274del | GCT | --- | 1 | 1 | Q.8 | 0.000165 |
ORF1ab/nsp3 | 274 | A274V | gCt | gTt | 1 | 1 | R.1 | 0.00009 |
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CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk
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