CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF1ab/nsp3 : CodonNum = 273

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF1ab/nsp3273I273VI1091VnonsynAtaGta12885128810.999693536-3538
ORF1ab/nsp3273I273VI1091VnonsynAtAGtG1288520.0001552193536-3538
ORF1ab/nsp3273I273VI1091VnonsynAtAGtT1288520.0001552193536-3538
ORF1ab/nsp3273I273MI1091MnonsynatAatG79679613536-3538
ORF1ab/nsp3273I273TI1091TnonsynaTaaCa25725713536-3538
ORF1ab/nsp3273I273delI1091deldelATA---18418413536-3538
ORF1ab/nsp3273I273II1091IsynatAatT33230.696973536-3538
ORF1ab/nsp3273I273II1091IsynatAatC33100.303033536-3538
ORF1ab/nsp3273I273KI1091KnonsynaTaaAa24230.9583333536-3538
ORF1ab/nsp3273I273KI1091KnonsynaTAaAG2410.04166673536-3538
ORF1ab/nsp3273I273LI1091LnonsynAtaCta19100.5263163536-3538
ORF1ab/nsp3273I273LI1091LnonsynAtaTta1990.4736843536-3538
ORF1ab/nsp3273I273EI1091EnonsynATaGAa111113536-3538
ORF1ab/nsp3273I273AI1091AnonsynATAGCT650.8333333536-3538
ORF1ab/nsp3273I273GI1091GnonsynATaGGa640.6666673536-3538
ORF1ab/nsp3273I273GI1091GnonsynATAGGT620.3333333536-3538
ORF1ab/nsp3273I273AI1091AnonsynATaGCa610.1666673536-3538
ORF1ab/nsp3273I273del1I1091del1delatAat-430.753536-3538
ORF1ab/nsp3273I273del1I1091del1delATA-NN410.253536-3538
ORF1ab/nsp3273I273RI1091RnonsynaTaaGa2213536-3538
ORF1ab/nsp3273I273XI1091XnonsynATaTGa210.53536-3538
ORF1ab/nsp3273I273XI1091XnonsynATaTAa210.53536-3538
ORF1ab/nsp3273I273SI1091SnonsynATaTCa1113536-3538
ORF1ab/nsp3273I273del2I1091del2delATa--a1113536-3538

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF1ab/nsp3273I273VAtaGta1288112885All0.002464
ORF1ab/nsp3273I273VAtAGtT212885All0
ORF1ab/nsp3273I273VAtAGtG212885All0
ORF1ab/nsp3273I273VAtaGta1068810690AY.99.20.984978
ORF1ab/nsp3273I273VAtAGtG210690AY.99.20.000184
ORF1ab/nsp3273I273MatAatG796796All0.000152
ORF1ab/nsp3273I273VAtaGta616616AY.99.10.956522
ORF1ab/nsp3273I273VAtaGta509509AY.990.534103
ORF1ab/nsp3273I273MatAatG428428B.1.36.360.257676
ORF1ab/nsp3273I273VAtaGta405405AY.40.00063
ORF1ab/nsp3273I273TaTaaCa257257All0.000049
ORF1ab/nsp3273I273VAtaGta248248AY.1030.00154
ORF1ab/nsp3273I273VAtaGta223224B.1.1.70.0002
ORF1ab/nsp3273I273VAtAGtT1224B.1.1.70.000001
ORF1ab/nsp3273I273delATA---184184All0.000035
ORF1ab/nsp3273I273MatAatG182182B.1.1.70.000163
ORF1ab/nsp3273I273MatAatG5353B.1.177.210.004053
ORF1ab/nsp3273I273TaTaaCa4848B.1.617.20.000181
ORF1ab/nsp3273I273TaTaaCa4646AY.390.001137
ORF1ab/nsp3273I273MatAatG3636AY.270.00233
ORF1ab/nsp3273I273IatAatT2333All0.000004
ORF1ab/nsp3273I273IatAatC1033All0.000002
ORF1ab/nsp3273I273VAtaGta3333P.10.00052
ORF1ab/nsp3273I273delATA---2727B.1.1.70.000024
ORF1ab/nsp3273I273KaTaaAa2324All0.000004
ORF1ab/nsp3273I273KaTAaAG124All0
ORF1ab/nsp3273I273delATA---2323P.1.150.005344
ORF1ab/nsp3273I273TaTaaCa2222AY.1030.000137
ORF1ab/nsp3273I273delATA---2222P.10.000347
ORF1ab/nsp3273I273LAtaCta1019All0.000002
ORF1ab/nsp3273I273LAtaTta919All0.000002
ORF1ab/nsp3273I273KaTaaAa1919P.10.000299
ORF1ab/nsp3273I273TaTaaCa1717AY.40.000026
ORF1ab/nsp3273I273VAtaGta1717B.1.617.20.000064
ORF1ab/nsp3273I273IatAatC816B.1.1.70.000007
ORF1ab/nsp3273I273IatAatT816B.1.1.70.000007
ORF1ab/nsp3273I273TaTaaCa1414B.1.1.70.000013
ORF1ab/nsp3273I273VAtaGta1313AY.430.000058
ORF1ab/nsp3273I273VAtaGta1313AY.5.30.004386
ORF1ab/nsp3273I273MatAatG1212AY.40.000019
ORF1ab/nsp3273I273TaTaaCa1212AY.9.20.000441
ORF1ab/nsp3273I273MatAatG1212B.1.20.000106
ORF1ab/nsp3273I273EATaGAa1111All0.000002
ORF1ab/nsp3273I273delATA---1111B.10.000101
ORF1ab/nsp3273I273EATaGAa1010P.10.000158
ORF1ab/nsp3273I273delATA---1010P.1.120.00484
ORF1ab/nsp3273I273TaTaaCa99AY.610.000943
ORF1ab/nsp3273I273IatAatT99B.1.5250.001018
ORF1ab/nsp3273I273TaTaaCa88AY.440.000049
ORF1ab/nsp3273I273VAtaGta88B.10.000073
ORF1ab/nsp3273I273MatAatG88B.1.258.170.000832
ORF1ab/nsp3273I273delATA---88B.1.6210.000708
ORF1ab/nsp3273I273TaTaaCa88K.30.049383
ORF1ab/nsp3273I273MatAatG77AY.1020.000186
ORF1ab/nsp3273I273VAtaGta77AY.1180.000439
ORF1ab/nsp3273I273VAtaGta77AY.46.60.000505
ORF1ab/nsp3273I273LAtaCta67B.1.1.70.000005
ORF1ab/nsp3273I273LAtaTta17B.1.1.70.000001
ORF1ab/nsp3273I273delATA---77B.1.20.000062
ORF1ab/nsp3273I273VAtaGta77B.1.20.000062
ORF1ab/nsp3273I273TaTaaCa77B.1.2580.000466
ORF1ab/nsp3273I273MatAatG77B.1.617.20.000026
ORF1ab/nsp3273I273VAtaGta77P.1.70.002235
ORF1ab/nsp3273I273GATaGGa460.222222
ORF1ab/nsp3273I273GATAGGT260.111111
ORF1ab/nsp3273I273VAtaGta66A.2.5.10.028846
ORF1ab/nsp3273I273AATAGCT56All0.000001
ORF1ab/nsp3273I273GATaGGa46All0.000001
ORF1ab/nsp3273I273GATAGGT26All0
ORF1ab/nsp3273I273AATaGCa16All0
ORF1ab/nsp3273I273TaTaaCa66AY.1020.000159
ORF1ab/nsp3273I273VAtaGta66AY.750.000336
ORF1ab/nsp3273I273MatAatG66B.1.10.000109
ORF1ab/nsp3273I273TaTaaCa55AY.50.000103
ORF1ab/nsp3273I273TaTaaCa55AY.75.10.000902
ORF1ab/nsp3273I273delATA---55B.1.10.000091
ORF1ab/nsp3273I273delATA---55C.370.00058
ORF1ab/nsp3273I273del1atAat-34All0.000001
ORF1ab/nsp3273I273del1ATA-NN14All0
ORF1ab/nsp3273I273delATA---44AY.430.000018
ORF1ab/nsp3273I273VAtaGta44AY.470.000124
ORF1ab/nsp3273I273VAtaGta44AY.50.000083
ORF1ab/nsp3273I273VAtaGta44AY.840.00175
ORF1ab/nsp3273I273VAtaGta44B.1.2580.000266
ORF1ab/nsp3273I273VAtaGta44B.1.351.20.00121
ORF1ab/nsp3273I273TaTaaCa44P.10.000063
ORF1ab/nsp3273I273delATA---33AY.1000.000138
ORF1ab/nsp3273I273TaTaaCa33AY.1000.000138
ORF1ab/nsp3273I273VAtaGta33AY.290.000047
ORF1ab/nsp3273I273MatAatG33AY.440.000018
ORF1ab/nsp3273I273TaTaaCa33AY.920.000862
ORF1ab/nsp3273I273MatAatG33B.10.000027
ORF1ab/nsp3273I273AATAGCT33B.1.1.70.000003
ORF1ab/nsp3273I273TaTaaCa33B.1.20.000026
ORF1ab/nsp3273I273MatAatG33B.1.360.000438
ORF1ab/nsp3273I273delATA---33B.1.617.20.000011
ORF1ab/nsp3273I273VAtaGta33P.1.10.000953
ORF1ab/nsp3273I273delATA---33P.1.140.000143
ORF1ab/nsp3273I273delATA---33P.1.70.000958
ORF1ab/nsp3273I273VAtaGta220.111111
ORF1ab/nsp3273I273AATAGCT220.111111
ORF1ab/nsp3273I273RaTaaGa220.111111
ORF1ab/nsp3273I273delATA---220.111111
ORF1ab/nsp3273I273RaTaaGa22All0
ORF1ab/nsp3273I273XATaTGa12All0
ORF1ab/nsp3273I273XATaTAa12All0
ORF1ab/nsp3273I273MatAatG22AY.1030.000012
ORF1ab/nsp3273I273LAtaCta22AY.1030.000012
ORF1ab/nsp3273I273MatAatG22AY.1140.000462
ORF1ab/nsp3273I273TaTaaCa22AY.1170.000169
ORF1ab/nsp3273I273TaTaaCa22AY.1180.000125
ORF1ab/nsp3273I273VAtaGta22AY.1190.000071
ORF1ab/nsp3273I273TaTaaCa22AY.200.000078
ORF1ab/nsp3273I273TaTaaCa22AY.30.00002
ORF1ab/nsp3273I273MatAatG22AY.390.000049
ORF1ab/nsp3273I273delATA---22AY.40.000003
ORF1ab/nsp3273I273TaTaaCa22AY.4.20.000043
ORF1ab/nsp3273I273LAtaTta22AY.4.2.10.000298
ORF1ab/nsp3273I273MatAatG22AY.420.00008
ORF1ab/nsp3273I273delATA---22AY.420.00008
ORF1ab/nsp3273I273VAtaGta22AY.420.00008
ORF1ab/nsp3273I273VAtaGta22AY.460.000208
ORF1ab/nsp3273I273VAtaGta22AY.60.000082
ORF1ab/nsp3273I273TaTaaCa22AY.670.000929
ORF1ab/nsp3273I273delATA---22AY.90.000135
ORF1ab/nsp3273I273VAtaGta22AY.9.20.000073
ORF1ab/nsp3273I273VAtAGtT12B.1.10.000018
ORF1ab/nsp3273I273VAtaGta12B.1.10.000018
ORF1ab/nsp3273I273delATA---22B.1.1.1740.006757
ORF1ab/nsp3273I273MatAatG22B.1.1.250.001137
ORF1ab/nsp3273I273TaTaaCa22B.1.1.2840.000215
ORF1ab/nsp3273I273TaTaaCa22B.1.1.700.000682
ORF1ab/nsp3273I273MatAatG22B.1.1770.000026
ORF1ab/nsp3273I273TaTaaCa22B.1.177.320.002699
ORF1ab/nsp3273I273MatAatG22B.1.177.750.002081
ORF1ab/nsp3273I273IatAatT22B.1.20.000018
ORF1ab/nsp3273I273delATA---22B.1.2430.000139
ORF1ab/nsp3273I273delATA---22B.1.4290.000047
ORF1ab/nsp3273I273TaTaaCa22B.1.6270.00404
ORF1ab/nsp3273I273del1atAat-22B.1.6270.00404
ORF1ab/nsp3273I273delATA---22N.60.014184
ORF1ab/nsp3273I273MatAatG22P.20.000373
ORF1ab/nsp3273I273MatAatG11A0.000387
ORF1ab/nsp3273I273KaTaaAa11A.2.40.003367
ORF1ab/nsp3273I273del2ATa--a11All0
ORF1ab/nsp3273I273SATaTCa11All0
ORF1ab/nsp3273I273VAtaGta11AY.1000.000046
ORF1ab/nsp3273I273IatAatC11AY.1020.000027
ORF1ab/nsp3273I273delATA---11AY.1020.000027
ORF1ab/nsp3273I273VAtaGta11AY.1050.000643
ORF1ab/nsp3273I273VAtaGta11AY.1090.00074
ORF1ab/nsp3273I273delATA---11AY.110.001339
ORF1ab/nsp3273I273MatAatG11AY.1110.000183
ORF1ab/nsp3273I273VAtaGta11AY.1110.000183
ORF1ab/nsp3273I273TaTaaCa11AY.1130.000142
ORF1ab/nsp3273I273VAtaGta11AY.1170.000085
ORF1ab/nsp3273I273MatAatG11AY.1180.000063
ORF1ab/nsp3273I273delATA---11AY.1180.000063
ORF1ab/nsp3273I273VAtaGta11AY.1200.000037
ORF1ab/nsp3273I273LAtaTta11AY.1200.000037
ORF1ab/nsp3273I273delATA---11AY.1210.000135
ORF1ab/nsp3273I273VAtaGta11AY.230.00007
ORF1ab/nsp3273I273delATA---11AY.230.00007
ORF1ab/nsp3273I273delATA---11AY.240.000431
ORF1ab/nsp3273I273delATA---11AY.250.000006
ORF1ab/nsp3273I273MatAatG11AY.250.000006
ORF1ab/nsp3273I273VAtaGta11AY.250.000006
ORF1ab/nsp3273I273TaTaaCa11AY.260.000028
ORF1ab/nsp3273I273delATA---11AY.260.000028
ORF1ab/nsp3273I273TaTaaCa11AY.290.000016
ORF1ab/nsp3273I273VAtaGta11AY.30.00001
ORF1ab/nsp3273I273VAtaGta11AY.360.000148
ORF1ab/nsp3273I273LAtaTta11AY.40.000002
ORF1ab/nsp3273I273LAtaTta11AY.4.20.000022
ORF1ab/nsp3273I273VAtaGta11AY.410.000294
ORF1ab/nsp3273I273TaTaaCa11AY.420.00004
ORF1ab/nsp3273I273LAtaTta11AY.430.000004
ORF1ab/nsp3273I273MatAatG11AY.430.000004
ORF1ab/nsp3273I273IatAatT11AY.430.000004
ORF1ab/nsp3273I273VAtaGta11AY.440.000006
ORF1ab/nsp3273I273delATA---11AY.450.000122
ORF1ab/nsp3273I273VAtaGta11AY.450.000122
ORF1ab/nsp3273I273KaTaaAa11AY.460.000104
ORF1ab/nsp3273I273TaTaaCa11AY.460.000104
ORF1ab/nsp3273I273VAtaGta11AY.46.20.000635
ORF1ab/nsp3273I273TaTaaCa11AY.46.60.000072
ORF1ab/nsp3273I273delATA---11AY.590.00053
ORF1ab/nsp3273I273VAtaGta11AY.590.00053
ORF1ab/nsp3273I273delATA---11AY.670.000464
ORF1ab/nsp3273I273delATA---11AY.680.000274
ORF1ab/nsp3273I273VAtaGta11AY.740.000116
ORF1ab/nsp3273I273TaTaaCa11AY.750.000056
ORF1ab/nsp3273I273delATA---11AY.840.000437
ORF1ab/nsp3273I273TaTaaCa11AY.9.10.000084
ORF1ab/nsp3273I273VAtaGta11AY.920.000287
ORF1ab/nsp3273I273MatAatG11AY.98.10.000048
ORF1ab/nsp3273I273TaTaaCa11AY.98.10.000048
ORF1ab/nsp3273I273IatAatT11AY.990.001049
ORF1ab/nsp3273I273del1atAat-11AY.990.001049
ORF1ab/nsp3273I273VAtaGta11AZ.20.000821
ORF1ab/nsp3273I273delATA---11AZ.20.000821
ORF1ab/nsp3273I273TaTaaCa11B.10.000009
ORF1ab/nsp3273I273MatAatG11B.1.1.1700.001247
ORF1ab/nsp3273I273LAtaCta11B.1.1.2220.000204
ORF1ab/nsp3273I273VAtaGta11B.1.1.280.000311
ORF1ab/nsp3273I273MatAatG11B.1.1.2910.000742
ORF1ab/nsp3273I273delATA---11B.1.1.3060.000438
ORF1ab/nsp3273I273IatAatC11B.1.1.3060.000438
ORF1ab/nsp3273I273delATA---11B.1.1.330.000421
ORF1ab/nsp3273I273delATA---11B.1.1.3480.000796
ORF1ab/nsp3273I273MatAatG11B.1.1.390.00051
ORF1ab/nsp3273I273TaTaaCa11B.1.1.4620.008621
ORF1ab/nsp3273I273del1ATA-NN11B.1.1.70.000001
ORF1ab/nsp3273I273delATA---11B.1.1570.002985
ORF1ab/nsp3273I273MatAatG11B.1.1600.000031
ORF1ab/nsp3273I273MatAatG11B.1.160.160.000929
ORF1ab/nsp3273I273delATA---11B.1.1770.000013
ORF1ab/nsp3273I273TaTaaCa11B.1.1770.000013
ORF1ab/nsp3273I273XATaTGa11B.1.177.730.000566
ORF1ab/nsp3273I273EATaGAa11B.1.20.000009
ORF1ab/nsp3273I273del2ATa--a11B.1.20.000009
ORF1ab/nsp3273I273LAtaTta11B.1.20.000009
ORF1ab/nsp3273I273SATaTCa11B.1.20.000009
ORF1ab/nsp3273I273AATaGCa11B.1.20.000009
ORF1ab/nsp3273I273KaTaaAa11B.1.20.000009
ORF1ab/nsp3273I273XATaTAa11B.1.20.000009
ORF1ab/nsp3273I273delATA---11B.1.2180.005155
ORF1ab/nsp3273I273VAtaGta11B.1.2210.000071
ORF1ab/nsp3273I273delATA---11B.1.2230.002778
ORF1ab/nsp3273I273VAtaGta11B.1.3110.000275
ORF1ab/nsp3273I273VAtaGta11B.1.3460.001311
ORF1ab/nsp3273I273delATA---11B.1.3510.00003
ORF1ab/nsp3273I273delATA---11B.1.360.000146
ORF1ab/nsp3273I273IatAatT11B.1.360.000146
ORF1ab/nsp3273I273MatAatG11B.1.36.10.00114
ORF1ab/nsp3273I273MatAatG11B.1.36.290.000517
ORF1ab/nsp3273I273MatAatG11B.1.36.90.003215
ORF1ab/nsp3273I273MatAatG11B.1.3990.001934
ORF1ab/nsp3273I273VAtaGta11B.1.4590.004082
ORF1ab/nsp3273I273TaTaaCa11B.1.4700.001404
ORF1ab/nsp3273I273delATA---11B.1.5170.000427
ORF1ab/nsp3273I273TaTaaCa11B.1.5750.000303
ORF1ab/nsp3273I273MatAatG11B.1.5820.000491
ORF1ab/nsp3273I273LAtaTta11B.1.5960.000087
ORF1ab/nsp3273I273TaTaaCa11B.1.5960.000087
ORF1ab/nsp3273I273delATA---11B.1.5960.000087
ORF1ab/nsp3273I273MatAatG11B.1.6060.006024
ORF1ab/nsp3273I273delATA---11B.1.617.10.000129
ORF1ab/nsp3273I273TaTaaCa11B.1.6210.000089
ORF1ab/nsp3273I273delATA---11B.1.621.10.000506
ORF1ab/nsp3273I273MatAatG11B.1.621.10.000506
ORF1ab/nsp3273I273VAtaGta11B.1.6230.000536
ORF1ab/nsp3273I273delATA---11B.1.6270.00202
ORF1ab/nsp3273I273IatAatT11B.1.6360.006711
ORF1ab/nsp3273I273VAtaGta11C.360.000911
ORF1ab/nsp3273I273LAtaCta11C.370.000116
ORF1ab/nsp3273I273delATA---11D.20.000075
ORF1ab/nsp3273I273MatAatG11P.10.000016
ORF1ab/nsp3273I273delATA---11P.1.10.000318
ORF1ab/nsp3273I273delATA---11P.1.100.000269
ORF1ab/nsp3273I273VAtaGta11P.1.120.000484
ORF1ab/nsp3273I273delATA---11P.1.130.000898
ORF1ab/nsp3273I273MatAatG11P.1.140.000048
ORF1ab/nsp3273I273VAtaGta11P.1.140.000048
ORF1ab/nsp3273I273VAtaGta11P.1.160.000374
ORF1ab/nsp3273I273KaTAaAG11P.1.170.000162
ORF1ab/nsp3273I273KaTaaAa11P.20.000187
ORF1ab/nsp3273I273VAtaGta11P.20.000187
ORF1ab/nsp3273I273delATA---11P.20.000187
ORF1ab/nsp3273I273delATA---11Q.80.000165
ORF1ab/nsp3273I273TaTaaCa11Q.80.000165