CoV-GLUE | Mutations | Mutation
Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):
ORF | CodonNum | Mut | ORF1abMut | MutType | RefCodon | MutCodon | AACount | CodonCount | CodonProp | Genome Position |
ORF1ab/nsp3 | 273 | I273V | I1091V | nonsyn | Ata | Gta | 12885 | 12881 | 0.99969 | 3536-3538 |
ORF1ab/nsp3 | 273 | I273V | I1091V | nonsyn | AtA | GtG | 12885 | 2 | 0.000155219 | 3536-3538 |
ORF1ab/nsp3 | 273 | I273V | I1091V | nonsyn | AtA | GtT | 12885 | 2 | 0.000155219 | 3536-3538 |
ORF1ab/nsp3 | 273 | I273M | I1091M | nonsyn | atA | atG | 796 | 796 | 1 | 3536-3538 |
ORF1ab/nsp3 | 273 | I273T | I1091T | nonsyn | aTa | aCa | 257 | 257 | 1 | 3536-3538 |
ORF1ab/nsp3 | 273 | I273del | I1091del | del | ATA | --- | 184 | 184 | 1 | 3536-3538 |
ORF1ab/nsp3 | 273 | I273I | I1091I | syn | atA | atT | 33 | 23 | 0.69697 | 3536-3538 |
ORF1ab/nsp3 | 273 | I273I | I1091I | syn | atA | atC | 33 | 10 | 0.30303 | 3536-3538 |
ORF1ab/nsp3 | 273 | I273K | I1091K | nonsyn | aTa | aAa | 24 | 23 | 0.958333 | 3536-3538 |
ORF1ab/nsp3 | 273 | I273K | I1091K | nonsyn | aTA | aAG | 24 | 1 | 0.0416667 | 3536-3538 |
ORF1ab/nsp3 | 273 | I273L | I1091L | nonsyn | Ata | Cta | 19 | 10 | 0.526316 | 3536-3538 |
ORF1ab/nsp3 | 273 | I273L | I1091L | nonsyn | Ata | Tta | 19 | 9 | 0.473684 | 3536-3538 |
ORF1ab/nsp3 | 273 | I273E | I1091E | nonsyn | ATa | GAa | 11 | 11 | 1 | 3536-3538 |
ORF1ab/nsp3 | 273 | I273A | I1091A | nonsyn | ATA | GCT | 6 | 5 | 0.833333 | 3536-3538 |
ORF1ab/nsp3 | 273 | I273G | I1091G | nonsyn | ATa | GGa | 6 | 4 | 0.666667 | 3536-3538 |
ORF1ab/nsp3 | 273 | I273G | I1091G | nonsyn | ATA | GGT | 6 | 2 | 0.333333 | 3536-3538 |
ORF1ab/nsp3 | 273 | I273A | I1091A | nonsyn | ATa | GCa | 6 | 1 | 0.166667 | 3536-3538 |
ORF1ab/nsp3 | 273 | I273del1 | I1091del1 | del | atA | at- | 4 | 3 | 0.75 | 3536-3538 |
ORF1ab/nsp3 | 273 | I273del1 | I1091del1 | del | ATA | -NN | 4 | 1 | 0.25 | 3536-3538 |
ORF1ab/nsp3 | 273 | I273R | I1091R | nonsyn | aTa | aGa | 2 | 2 | 1 | 3536-3538 |
ORF1ab/nsp3 | 273 | I273X | I1091X | nonsyn | ATa | TGa | 2 | 1 | 0.5 | 3536-3538 |
ORF1ab/nsp3 | 273 | I273X | I1091X | nonsyn | ATa | TAa | 2 | 1 | 0.5 | 3536-3538 |
ORF1ab/nsp3 | 273 | I273S | I1091S | nonsyn | ATa | TCa | 1 | 1 | 1 | 3536-3538 |
ORF1ab/nsp3 | 273 | I273del2 | I1091del2 | del | ATa | --a | 1 | 1 | 1 | 3536-3538 |
Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):
ORF | CodonNum | Mut | RefCodon | MutCodon | CodonCount | AACount | Lineage | LineageCodonProp |
ORF1ab/nsp3 | 273 | I273V | Ata | Gta | 12881 | 12885 | All | 0.002464 |
ORF1ab/nsp3 | 273 | I273V | AtA | GtT | 2 | 12885 | All | 0 |
ORF1ab/nsp3 | 273 | I273V | AtA | GtG | 2 | 12885 | All | 0 |
ORF1ab/nsp3 | 273 | I273V | Ata | Gta | 10688 | 10690 | AY.99.2 | 0.984978 |
ORF1ab/nsp3 | 273 | I273V | AtA | GtG | 2 | 10690 | AY.99.2 | 0.000184 |
ORF1ab/nsp3 | 273 | I273M | atA | atG | 796 | 796 | All | 0.000152 |
ORF1ab/nsp3 | 273 | I273V | Ata | Gta | 616 | 616 | AY.99.1 | 0.956522 |
ORF1ab/nsp3 | 273 | I273V | Ata | Gta | 509 | 509 | AY.99 | 0.534103 |
ORF1ab/nsp3 | 273 | I273M | atA | atG | 428 | 428 | B.1.36.36 | 0.257676 |
ORF1ab/nsp3 | 273 | I273V | Ata | Gta | 405 | 405 | AY.4 | 0.00063 |
ORF1ab/nsp3 | 273 | I273T | aTa | aCa | 257 | 257 | All | 0.000049 |
ORF1ab/nsp3 | 273 | I273V | Ata | Gta | 248 | 248 | AY.103 | 0.00154 |
ORF1ab/nsp3 | 273 | I273V | Ata | Gta | 223 | 224 | B.1.1.7 | 0.0002 |
ORF1ab/nsp3 | 273 | I273V | AtA | GtT | 1 | 224 | B.1.1.7 | 0.000001 |
ORF1ab/nsp3 | 273 | I273del | ATA | --- | 184 | 184 | All | 0.000035 |
ORF1ab/nsp3 | 273 | I273M | atA | atG | 182 | 182 | B.1.1.7 | 0.000163 |
ORF1ab/nsp3 | 273 | I273M | atA | atG | 53 | 53 | B.1.177.21 | 0.004053 |
ORF1ab/nsp3 | 273 | I273T | aTa | aCa | 48 | 48 | B.1.617.2 | 0.000181 |
ORF1ab/nsp3 | 273 | I273T | aTa | aCa | 46 | 46 | AY.39 | 0.001137 |
ORF1ab/nsp3 | 273 | I273M | atA | atG | 36 | 36 | AY.27 | 0.00233 |
ORF1ab/nsp3 | 273 | I273I | atA | atT | 23 | 33 | All | 0.000004 |
ORF1ab/nsp3 | 273 | I273I | atA | atC | 10 | 33 | All | 0.000002 |
ORF1ab/nsp3 | 273 | I273V | Ata | Gta | 33 | 33 | P.1 | 0.00052 |
ORF1ab/nsp3 | 273 | I273del | ATA | --- | 27 | 27 | B.1.1.7 | 0.000024 |
ORF1ab/nsp3 | 273 | I273K | aTa | aAa | 23 | 24 | All | 0.000004 |
ORF1ab/nsp3 | 273 | I273K | aTA | aAG | 1 | 24 | All | 0 |
ORF1ab/nsp3 | 273 | I273del | ATA | --- | 23 | 23 | P.1.15 | 0.005344 |
ORF1ab/nsp3 | 273 | I273T | aTa | aCa | 22 | 22 | AY.103 | 0.000137 |
ORF1ab/nsp3 | 273 | I273del | ATA | --- | 22 | 22 | P.1 | 0.000347 |
ORF1ab/nsp3 | 273 | I273L | Ata | Cta | 10 | 19 | All | 0.000002 |
ORF1ab/nsp3 | 273 | I273L | Ata | Tta | 9 | 19 | All | 0.000002 |
ORF1ab/nsp3 | 273 | I273K | aTa | aAa | 19 | 19 | P.1 | 0.000299 |
ORF1ab/nsp3 | 273 | I273T | aTa | aCa | 17 | 17 | AY.4 | 0.000026 |
ORF1ab/nsp3 | 273 | I273V | Ata | Gta | 17 | 17 | B.1.617.2 | 0.000064 |
ORF1ab/nsp3 | 273 | I273I | atA | atC | 8 | 16 | B.1.1.7 | 0.000007 |
ORF1ab/nsp3 | 273 | I273I | atA | atT | 8 | 16 | B.1.1.7 | 0.000007 |
ORF1ab/nsp3 | 273 | I273T | aTa | aCa | 14 | 14 | B.1.1.7 | 0.000013 |
ORF1ab/nsp3 | 273 | I273V | Ata | Gta | 13 | 13 | AY.43 | 0.000058 |
ORF1ab/nsp3 | 273 | I273V | Ata | Gta | 13 | 13 | AY.5.3 | 0.004386 |
ORF1ab/nsp3 | 273 | I273M | atA | atG | 12 | 12 | AY.4 | 0.000019 |
ORF1ab/nsp3 | 273 | I273T | aTa | aCa | 12 | 12 | AY.9.2 | 0.000441 |
ORF1ab/nsp3 | 273 | I273M | atA | atG | 12 | 12 | B.1.2 | 0.000106 |
ORF1ab/nsp3 | 273 | I273E | ATa | GAa | 11 | 11 | All | 0.000002 |
ORF1ab/nsp3 | 273 | I273del | ATA | --- | 11 | 11 | B.1 | 0.000101 |
ORF1ab/nsp3 | 273 | I273E | ATa | GAa | 10 | 10 | P.1 | 0.000158 |
ORF1ab/nsp3 | 273 | I273del | ATA | --- | 10 | 10 | P.1.12 | 0.00484 |
ORF1ab/nsp3 | 273 | I273T | aTa | aCa | 9 | 9 | AY.61 | 0.000943 |
ORF1ab/nsp3 | 273 | I273I | atA | atT | 9 | 9 | B.1.525 | 0.001018 |
ORF1ab/nsp3 | 273 | I273T | aTa | aCa | 8 | 8 | AY.44 | 0.000049 |
ORF1ab/nsp3 | 273 | I273V | Ata | Gta | 8 | 8 | B.1 | 0.000073 |
ORF1ab/nsp3 | 273 | I273M | atA | atG | 8 | 8 | B.1.258.17 | 0.000832 |
ORF1ab/nsp3 | 273 | I273del | ATA | --- | 8 | 8 | B.1.621 | 0.000708 |
ORF1ab/nsp3 | 273 | I273T | aTa | aCa | 8 | 8 | K.3 | 0.049383 |
ORF1ab/nsp3 | 273 | I273M | atA | atG | 7 | 7 | AY.102 | 0.000186 |
ORF1ab/nsp3 | 273 | I273V | Ata | Gta | 7 | 7 | AY.118 | 0.000439 |
ORF1ab/nsp3 | 273 | I273V | Ata | Gta | 7 | 7 | AY.46.6 | 0.000505 |
ORF1ab/nsp3 | 273 | I273L | Ata | Cta | 6 | 7 | B.1.1.7 | 0.000005 |
ORF1ab/nsp3 | 273 | I273L | Ata | Tta | 1 | 7 | B.1.1.7 | 0.000001 |
ORF1ab/nsp3 | 273 | I273del | ATA | --- | 7 | 7 | B.1.2 | 0.000062 |
ORF1ab/nsp3 | 273 | I273V | Ata | Gta | 7 | 7 | B.1.2 | 0.000062 |
ORF1ab/nsp3 | 273 | I273T | aTa | aCa | 7 | 7 | B.1.258 | 0.000466 |
ORF1ab/nsp3 | 273 | I273M | atA | atG | 7 | 7 | B.1.617.2 | 0.000026 |
ORF1ab/nsp3 | 273 | I273V | Ata | Gta | 7 | 7 | P.1.7 | 0.002235 |
ORF1ab/nsp3 | 273 | I273G | ATa | GGa | 4 | 6 | 0.222222 | |
ORF1ab/nsp3 | 273 | I273G | ATA | GGT | 2 | 6 | 0.111111 | |
ORF1ab/nsp3 | 273 | I273V | Ata | Gta | 6 | 6 | A.2.5.1 | 0.028846 |
ORF1ab/nsp3 | 273 | I273A | ATA | GCT | 5 | 6 | All | 0.000001 |
ORF1ab/nsp3 | 273 | I273G | ATa | GGa | 4 | 6 | All | 0.000001 |
ORF1ab/nsp3 | 273 | I273G | ATA | GGT | 2 | 6 | All | 0 |
ORF1ab/nsp3 | 273 | I273A | ATa | GCa | 1 | 6 | All | 0 |
ORF1ab/nsp3 | 273 | I273T | aTa | aCa | 6 | 6 | AY.102 | 0.000159 |
ORF1ab/nsp3 | 273 | I273V | Ata | Gta | 6 | 6 | AY.75 | 0.000336 |
ORF1ab/nsp3 | 273 | I273M | atA | atG | 6 | 6 | B.1.1 | 0.000109 |
ORF1ab/nsp3 | 273 | I273T | aTa | aCa | 5 | 5 | AY.5 | 0.000103 |
ORF1ab/nsp3 | 273 | I273T | aTa | aCa | 5 | 5 | AY.75.1 | 0.000902 |
ORF1ab/nsp3 | 273 | I273del | ATA | --- | 5 | 5 | B.1.1 | 0.000091 |
ORF1ab/nsp3 | 273 | I273del | ATA | --- | 5 | 5 | C.37 | 0.00058 |
ORF1ab/nsp3 | 273 | I273del1 | atA | at- | 3 | 4 | All | 0.000001 |
ORF1ab/nsp3 | 273 | I273del1 | ATA | -NN | 1 | 4 | All | 0 |
ORF1ab/nsp3 | 273 | I273del | ATA | --- | 4 | 4 | AY.43 | 0.000018 |
ORF1ab/nsp3 | 273 | I273V | Ata | Gta | 4 | 4 | AY.47 | 0.000124 |
ORF1ab/nsp3 | 273 | I273V | Ata | Gta | 4 | 4 | AY.5 | 0.000083 |
ORF1ab/nsp3 | 273 | I273V | Ata | Gta | 4 | 4 | AY.84 | 0.00175 |
ORF1ab/nsp3 | 273 | I273V | Ata | Gta | 4 | 4 | B.1.258 | 0.000266 |
ORF1ab/nsp3 | 273 | I273V | Ata | Gta | 4 | 4 | B.1.351.2 | 0.00121 |
ORF1ab/nsp3 | 273 | I273T | aTa | aCa | 4 | 4 | P.1 | 0.000063 |
ORF1ab/nsp3 | 273 | I273del | ATA | --- | 3 | 3 | AY.100 | 0.000138 |
ORF1ab/nsp3 | 273 | I273T | aTa | aCa | 3 | 3 | AY.100 | 0.000138 |
ORF1ab/nsp3 | 273 | I273V | Ata | Gta | 3 | 3 | AY.29 | 0.000047 |
ORF1ab/nsp3 | 273 | I273M | atA | atG | 3 | 3 | AY.44 | 0.000018 |
ORF1ab/nsp3 | 273 | I273T | aTa | aCa | 3 | 3 | AY.92 | 0.000862 |
ORF1ab/nsp3 | 273 | I273M | atA | atG | 3 | 3 | B.1 | 0.000027 |
ORF1ab/nsp3 | 273 | I273A | ATA | GCT | 3 | 3 | B.1.1.7 | 0.000003 |
ORF1ab/nsp3 | 273 | I273T | aTa | aCa | 3 | 3 | B.1.2 | 0.000026 |
ORF1ab/nsp3 | 273 | I273M | atA | atG | 3 | 3 | B.1.36 | 0.000438 |
ORF1ab/nsp3 | 273 | I273del | ATA | --- | 3 | 3 | B.1.617.2 | 0.000011 |
ORF1ab/nsp3 | 273 | I273V | Ata | Gta | 3 | 3 | P.1.1 | 0.000953 |
ORF1ab/nsp3 | 273 | I273del | ATA | --- | 3 | 3 | P.1.14 | 0.000143 |
ORF1ab/nsp3 | 273 | I273del | ATA | --- | 3 | 3 | P.1.7 | 0.000958 |
ORF1ab/nsp3 | 273 | I273V | Ata | Gta | 2 | 2 | 0.111111 | |
ORF1ab/nsp3 | 273 | I273A | ATA | GCT | 2 | 2 | 0.111111 | |
ORF1ab/nsp3 | 273 | I273R | aTa | aGa | 2 | 2 | 0.111111 | |
ORF1ab/nsp3 | 273 | I273del | ATA | --- | 2 | 2 | 0.111111 | |
ORF1ab/nsp3 | 273 | I273R | aTa | aGa | 2 | 2 | All | 0 |
ORF1ab/nsp3 | 273 | I273X | ATa | TGa | 1 | 2 | All | 0 |
ORF1ab/nsp3 | 273 | I273X | ATa | TAa | 1 | 2 | All | 0 |
ORF1ab/nsp3 | 273 | I273M | atA | atG | 2 | 2 | AY.103 | 0.000012 |
ORF1ab/nsp3 | 273 | I273L | Ata | Cta | 2 | 2 | AY.103 | 0.000012 |
ORF1ab/nsp3 | 273 | I273M | atA | atG | 2 | 2 | AY.114 | 0.000462 |
ORF1ab/nsp3 | 273 | I273T | aTa | aCa | 2 | 2 | AY.117 | 0.000169 |
ORF1ab/nsp3 | 273 | I273T | aTa | aCa | 2 | 2 | AY.118 | 0.000125 |
ORF1ab/nsp3 | 273 | I273V | Ata | Gta | 2 | 2 | AY.119 | 0.000071 |
ORF1ab/nsp3 | 273 | I273T | aTa | aCa | 2 | 2 | AY.20 | 0.000078 |
ORF1ab/nsp3 | 273 | I273T | aTa | aCa | 2 | 2 | AY.3 | 0.00002 |
ORF1ab/nsp3 | 273 | I273M | atA | atG | 2 | 2 | AY.39 | 0.000049 |
ORF1ab/nsp3 | 273 | I273del | ATA | --- | 2 | 2 | AY.4 | 0.000003 |
ORF1ab/nsp3 | 273 | I273T | aTa | aCa | 2 | 2 | AY.4.2 | 0.000043 |
ORF1ab/nsp3 | 273 | I273L | Ata | Tta | 2 | 2 | AY.4.2.1 | 0.000298 |
ORF1ab/nsp3 | 273 | I273M | atA | atG | 2 | 2 | AY.42 | 0.00008 |
ORF1ab/nsp3 | 273 | I273del | ATA | --- | 2 | 2 | AY.42 | 0.00008 |
ORF1ab/nsp3 | 273 | I273V | Ata | Gta | 2 | 2 | AY.42 | 0.00008 |
ORF1ab/nsp3 | 273 | I273V | Ata | Gta | 2 | 2 | AY.46 | 0.000208 |
ORF1ab/nsp3 | 273 | I273V | Ata | Gta | 2 | 2 | AY.6 | 0.000082 |
ORF1ab/nsp3 | 273 | I273T | aTa | aCa | 2 | 2 | AY.67 | 0.000929 |
ORF1ab/nsp3 | 273 | I273del | ATA | --- | 2 | 2 | AY.9 | 0.000135 |
ORF1ab/nsp3 | 273 | I273V | Ata | Gta | 2 | 2 | AY.9.2 | 0.000073 |
ORF1ab/nsp3 | 273 | I273V | AtA | GtT | 1 | 2 | B.1.1 | 0.000018 |
ORF1ab/nsp3 | 273 | I273V | Ata | Gta | 1 | 2 | B.1.1 | 0.000018 |
ORF1ab/nsp3 | 273 | I273del | ATA | --- | 2 | 2 | B.1.1.174 | 0.006757 |
ORF1ab/nsp3 | 273 | I273M | atA | atG | 2 | 2 | B.1.1.25 | 0.001137 |
ORF1ab/nsp3 | 273 | I273T | aTa | aCa | 2 | 2 | B.1.1.284 | 0.000215 |
ORF1ab/nsp3 | 273 | I273T | aTa | aCa | 2 | 2 | B.1.1.70 | 0.000682 |
ORF1ab/nsp3 | 273 | I273M | atA | atG | 2 | 2 | B.1.177 | 0.000026 |
ORF1ab/nsp3 | 273 | I273T | aTa | aCa | 2 | 2 | B.1.177.32 | 0.002699 |
ORF1ab/nsp3 | 273 | I273M | atA | atG | 2 | 2 | B.1.177.75 | 0.002081 |
ORF1ab/nsp3 | 273 | I273I | atA | atT | 2 | 2 | B.1.2 | 0.000018 |
ORF1ab/nsp3 | 273 | I273del | ATA | --- | 2 | 2 | B.1.243 | 0.000139 |
ORF1ab/nsp3 | 273 | I273del | ATA | --- | 2 | 2 | B.1.429 | 0.000047 |
ORF1ab/nsp3 | 273 | I273T | aTa | aCa | 2 | 2 | B.1.627 | 0.00404 |
ORF1ab/nsp3 | 273 | I273del1 | atA | at- | 2 | 2 | B.1.627 | 0.00404 |
ORF1ab/nsp3 | 273 | I273del | ATA | --- | 2 | 2 | N.6 | 0.014184 |
ORF1ab/nsp3 | 273 | I273M | atA | atG | 2 | 2 | P.2 | 0.000373 |
ORF1ab/nsp3 | 273 | I273M | atA | atG | 1 | 1 | A | 0.000387 |
ORF1ab/nsp3 | 273 | I273K | aTa | aAa | 1 | 1 | A.2.4 | 0.003367 |
ORF1ab/nsp3 | 273 | I273del2 | ATa | --a | 1 | 1 | All | 0 |
ORF1ab/nsp3 | 273 | I273S | ATa | TCa | 1 | 1 | All | 0 |
ORF1ab/nsp3 | 273 | I273V | Ata | Gta | 1 | 1 | AY.100 | 0.000046 |
ORF1ab/nsp3 | 273 | I273I | atA | atC | 1 | 1 | AY.102 | 0.000027 |
ORF1ab/nsp3 | 273 | I273del | ATA | --- | 1 | 1 | AY.102 | 0.000027 |
ORF1ab/nsp3 | 273 | I273V | Ata | Gta | 1 | 1 | AY.105 | 0.000643 |
ORF1ab/nsp3 | 273 | I273V | Ata | Gta | 1 | 1 | AY.109 | 0.00074 |
ORF1ab/nsp3 | 273 | I273del | ATA | --- | 1 | 1 | AY.11 | 0.001339 |
ORF1ab/nsp3 | 273 | I273M | atA | atG | 1 | 1 | AY.111 | 0.000183 |
ORF1ab/nsp3 | 273 | I273V | Ata | Gta | 1 | 1 | AY.111 | 0.000183 |
ORF1ab/nsp3 | 273 | I273T | aTa | aCa | 1 | 1 | AY.113 | 0.000142 |
ORF1ab/nsp3 | 273 | I273V | Ata | Gta | 1 | 1 | AY.117 | 0.000085 |
ORF1ab/nsp3 | 273 | I273M | atA | atG | 1 | 1 | AY.118 | 0.000063 |
ORF1ab/nsp3 | 273 | I273del | ATA | --- | 1 | 1 | AY.118 | 0.000063 |
ORF1ab/nsp3 | 273 | I273V | Ata | Gta | 1 | 1 | AY.120 | 0.000037 |
ORF1ab/nsp3 | 273 | I273L | Ata | Tta | 1 | 1 | AY.120 | 0.000037 |
ORF1ab/nsp3 | 273 | I273del | ATA | --- | 1 | 1 | AY.121 | 0.000135 |
ORF1ab/nsp3 | 273 | I273V | Ata | Gta | 1 | 1 | AY.23 | 0.00007 |
ORF1ab/nsp3 | 273 | I273del | ATA | --- | 1 | 1 | AY.23 | 0.00007 |
ORF1ab/nsp3 | 273 | I273del | ATA | --- | 1 | 1 | AY.24 | 0.000431 |
ORF1ab/nsp3 | 273 | I273del | ATA | --- | 1 | 1 | AY.25 | 0.000006 |
ORF1ab/nsp3 | 273 | I273M | atA | atG | 1 | 1 | AY.25 | 0.000006 |
ORF1ab/nsp3 | 273 | I273V | Ata | Gta | 1 | 1 | AY.25 | 0.000006 |
ORF1ab/nsp3 | 273 | I273T | aTa | aCa | 1 | 1 | AY.26 | 0.000028 |
ORF1ab/nsp3 | 273 | I273del | ATA | --- | 1 | 1 | AY.26 | 0.000028 |
ORF1ab/nsp3 | 273 | I273T | aTa | aCa | 1 | 1 | AY.29 | 0.000016 |
ORF1ab/nsp3 | 273 | I273V | Ata | Gta | 1 | 1 | AY.3 | 0.00001 |
ORF1ab/nsp3 | 273 | I273V | Ata | Gta | 1 | 1 | AY.36 | 0.000148 |
ORF1ab/nsp3 | 273 | I273L | Ata | Tta | 1 | 1 | AY.4 | 0.000002 |
ORF1ab/nsp3 | 273 | I273L | Ata | Tta | 1 | 1 | AY.4.2 | 0.000022 |
ORF1ab/nsp3 | 273 | I273V | Ata | Gta | 1 | 1 | AY.41 | 0.000294 |
ORF1ab/nsp3 | 273 | I273T | aTa | aCa | 1 | 1 | AY.42 | 0.00004 |
ORF1ab/nsp3 | 273 | I273L | Ata | Tta | 1 | 1 | AY.43 | 0.000004 |
ORF1ab/nsp3 | 273 | I273M | atA | atG | 1 | 1 | AY.43 | 0.000004 |
ORF1ab/nsp3 | 273 | I273I | atA | atT | 1 | 1 | AY.43 | 0.000004 |
ORF1ab/nsp3 | 273 | I273V | Ata | Gta | 1 | 1 | AY.44 | 0.000006 |
ORF1ab/nsp3 | 273 | I273del | ATA | --- | 1 | 1 | AY.45 | 0.000122 |
ORF1ab/nsp3 | 273 | I273V | Ata | Gta | 1 | 1 | AY.45 | 0.000122 |
ORF1ab/nsp3 | 273 | I273K | aTa | aAa | 1 | 1 | AY.46 | 0.000104 |
ORF1ab/nsp3 | 273 | I273T | aTa | aCa | 1 | 1 | AY.46 | 0.000104 |
ORF1ab/nsp3 | 273 | I273V | Ata | Gta | 1 | 1 | AY.46.2 | 0.000635 |
ORF1ab/nsp3 | 273 | I273T | aTa | aCa | 1 | 1 | AY.46.6 | 0.000072 |
ORF1ab/nsp3 | 273 | I273del | ATA | --- | 1 | 1 | AY.59 | 0.00053 |
ORF1ab/nsp3 | 273 | I273V | Ata | Gta | 1 | 1 | AY.59 | 0.00053 |
ORF1ab/nsp3 | 273 | I273del | ATA | --- | 1 | 1 | AY.67 | 0.000464 |
ORF1ab/nsp3 | 273 | I273del | ATA | --- | 1 | 1 | AY.68 | 0.000274 |
ORF1ab/nsp3 | 273 | I273V | Ata | Gta | 1 | 1 | AY.74 | 0.000116 |
ORF1ab/nsp3 | 273 | I273T | aTa | aCa | 1 | 1 | AY.75 | 0.000056 |
ORF1ab/nsp3 | 273 | I273del | ATA | --- | 1 | 1 | AY.84 | 0.000437 |
ORF1ab/nsp3 | 273 | I273T | aTa | aCa | 1 | 1 | AY.9.1 | 0.000084 |
ORF1ab/nsp3 | 273 | I273V | Ata | Gta | 1 | 1 | AY.92 | 0.000287 |
ORF1ab/nsp3 | 273 | I273M | atA | atG | 1 | 1 | AY.98.1 | 0.000048 |
ORF1ab/nsp3 | 273 | I273T | aTa | aCa | 1 | 1 | AY.98.1 | 0.000048 |
ORF1ab/nsp3 | 273 | I273I | atA | atT | 1 | 1 | AY.99 | 0.001049 |
ORF1ab/nsp3 | 273 | I273del1 | atA | at- | 1 | 1 | AY.99 | 0.001049 |
ORF1ab/nsp3 | 273 | I273V | Ata | Gta | 1 | 1 | AZ.2 | 0.000821 |
ORF1ab/nsp3 | 273 | I273del | ATA | --- | 1 | 1 | AZ.2 | 0.000821 |
ORF1ab/nsp3 | 273 | I273T | aTa | aCa | 1 | 1 | B.1 | 0.000009 |
ORF1ab/nsp3 | 273 | I273M | atA | atG | 1 | 1 | B.1.1.170 | 0.001247 |
ORF1ab/nsp3 | 273 | I273L | Ata | Cta | 1 | 1 | B.1.1.222 | 0.000204 |
ORF1ab/nsp3 | 273 | I273V | Ata | Gta | 1 | 1 | B.1.1.28 | 0.000311 |
ORF1ab/nsp3 | 273 | I273M | atA | atG | 1 | 1 | B.1.1.291 | 0.000742 |
ORF1ab/nsp3 | 273 | I273del | ATA | --- | 1 | 1 | B.1.1.306 | 0.000438 |
ORF1ab/nsp3 | 273 | I273I | atA | atC | 1 | 1 | B.1.1.306 | 0.000438 |
ORF1ab/nsp3 | 273 | I273del | ATA | --- | 1 | 1 | B.1.1.33 | 0.000421 |
ORF1ab/nsp3 | 273 | I273del | ATA | --- | 1 | 1 | B.1.1.348 | 0.000796 |
ORF1ab/nsp3 | 273 | I273M | atA | atG | 1 | 1 | B.1.1.39 | 0.00051 |
ORF1ab/nsp3 | 273 | I273T | aTa | aCa | 1 | 1 | B.1.1.462 | 0.008621 |
ORF1ab/nsp3 | 273 | I273del1 | ATA | -NN | 1 | 1 | B.1.1.7 | 0.000001 |
ORF1ab/nsp3 | 273 | I273del | ATA | --- | 1 | 1 | B.1.157 | 0.002985 |
ORF1ab/nsp3 | 273 | I273M | atA | atG | 1 | 1 | B.1.160 | 0.000031 |
ORF1ab/nsp3 | 273 | I273M | atA | atG | 1 | 1 | B.1.160.16 | 0.000929 |
ORF1ab/nsp3 | 273 | I273del | ATA | --- | 1 | 1 | B.1.177 | 0.000013 |
ORF1ab/nsp3 | 273 | I273T | aTa | aCa | 1 | 1 | B.1.177 | 0.000013 |
ORF1ab/nsp3 | 273 | I273X | ATa | TGa | 1 | 1 | B.1.177.73 | 0.000566 |
ORF1ab/nsp3 | 273 | I273E | ATa | GAa | 1 | 1 | B.1.2 | 0.000009 |
ORF1ab/nsp3 | 273 | I273del2 | ATa | --a | 1 | 1 | B.1.2 | 0.000009 |
ORF1ab/nsp3 | 273 | I273L | Ata | Tta | 1 | 1 | B.1.2 | 0.000009 |
ORF1ab/nsp3 | 273 | I273S | ATa | TCa | 1 | 1 | B.1.2 | 0.000009 |
ORF1ab/nsp3 | 273 | I273A | ATa | GCa | 1 | 1 | B.1.2 | 0.000009 |
ORF1ab/nsp3 | 273 | I273K | aTa | aAa | 1 | 1 | B.1.2 | 0.000009 |
ORF1ab/nsp3 | 273 | I273X | ATa | TAa | 1 | 1 | B.1.2 | 0.000009 |
ORF1ab/nsp3 | 273 | I273del | ATA | --- | 1 | 1 | B.1.218 | 0.005155 |
ORF1ab/nsp3 | 273 | I273V | Ata | Gta | 1 | 1 | B.1.221 | 0.000071 |
ORF1ab/nsp3 | 273 | I273del | ATA | --- | 1 | 1 | B.1.223 | 0.002778 |
ORF1ab/nsp3 | 273 | I273V | Ata | Gta | 1 | 1 | B.1.311 | 0.000275 |
ORF1ab/nsp3 | 273 | I273V | Ata | Gta | 1 | 1 | B.1.346 | 0.001311 |
ORF1ab/nsp3 | 273 | I273del | ATA | --- | 1 | 1 | B.1.351 | 0.00003 |
ORF1ab/nsp3 | 273 | I273del | ATA | --- | 1 | 1 | B.1.36 | 0.000146 |
ORF1ab/nsp3 | 273 | I273I | atA | atT | 1 | 1 | B.1.36 | 0.000146 |
ORF1ab/nsp3 | 273 | I273M | atA | atG | 1 | 1 | B.1.36.1 | 0.00114 |
ORF1ab/nsp3 | 273 | I273M | atA | atG | 1 | 1 | B.1.36.29 | 0.000517 |
ORF1ab/nsp3 | 273 | I273M | atA | atG | 1 | 1 | B.1.36.9 | 0.003215 |
ORF1ab/nsp3 | 273 | I273M | atA | atG | 1 | 1 | B.1.399 | 0.001934 |
ORF1ab/nsp3 | 273 | I273V | Ata | Gta | 1 | 1 | B.1.459 | 0.004082 |
ORF1ab/nsp3 | 273 | I273T | aTa | aCa | 1 | 1 | B.1.470 | 0.001404 |
ORF1ab/nsp3 | 273 | I273del | ATA | --- | 1 | 1 | B.1.517 | 0.000427 |
ORF1ab/nsp3 | 273 | I273T | aTa | aCa | 1 | 1 | B.1.575 | 0.000303 |
ORF1ab/nsp3 | 273 | I273M | atA | atG | 1 | 1 | B.1.582 | 0.000491 |
ORF1ab/nsp3 | 273 | I273L | Ata | Tta | 1 | 1 | B.1.596 | 0.000087 |
ORF1ab/nsp3 | 273 | I273T | aTa | aCa | 1 | 1 | B.1.596 | 0.000087 |
ORF1ab/nsp3 | 273 | I273del | ATA | --- | 1 | 1 | B.1.596 | 0.000087 |
ORF1ab/nsp3 | 273 | I273M | atA | atG | 1 | 1 | B.1.606 | 0.006024 |
ORF1ab/nsp3 | 273 | I273del | ATA | --- | 1 | 1 | B.1.617.1 | 0.000129 |
ORF1ab/nsp3 | 273 | I273T | aTa | aCa | 1 | 1 | B.1.621 | 0.000089 |
ORF1ab/nsp3 | 273 | I273del | ATA | --- | 1 | 1 | B.1.621.1 | 0.000506 |
ORF1ab/nsp3 | 273 | I273M | atA | atG | 1 | 1 | B.1.621.1 | 0.000506 |
ORF1ab/nsp3 | 273 | I273V | Ata | Gta | 1 | 1 | B.1.623 | 0.000536 |
ORF1ab/nsp3 | 273 | I273del | ATA | --- | 1 | 1 | B.1.627 | 0.00202 |
ORF1ab/nsp3 | 273 | I273I | atA | atT | 1 | 1 | B.1.636 | 0.006711 |
ORF1ab/nsp3 | 273 | I273V | Ata | Gta | 1 | 1 | C.36 | 0.000911 |
ORF1ab/nsp3 | 273 | I273L | Ata | Cta | 1 | 1 | C.37 | 0.000116 |
ORF1ab/nsp3 | 273 | I273del | ATA | --- | 1 | 1 | D.2 | 0.000075 |
ORF1ab/nsp3 | 273 | I273M | atA | atG | 1 | 1 | P.1 | 0.000016 |
ORF1ab/nsp3 | 273 | I273del | ATA | --- | 1 | 1 | P.1.1 | 0.000318 |
ORF1ab/nsp3 | 273 | I273del | ATA | --- | 1 | 1 | P.1.10 | 0.000269 |
ORF1ab/nsp3 | 273 | I273V | Ata | Gta | 1 | 1 | P.1.12 | 0.000484 |
ORF1ab/nsp3 | 273 | I273del | ATA | --- | 1 | 1 | P.1.13 | 0.000898 |
ORF1ab/nsp3 | 273 | I273M | atA | atG | 1 | 1 | P.1.14 | 0.000048 |
ORF1ab/nsp3 | 273 | I273V | Ata | Gta | 1 | 1 | P.1.14 | 0.000048 |
ORF1ab/nsp3 | 273 | I273V | Ata | Gta | 1 | 1 | P.1.16 | 0.000374 |
ORF1ab/nsp3 | 273 | I273K | aTA | aAG | 1 | 1 | P.1.17 | 0.000162 |
ORF1ab/nsp3 | 273 | I273K | aTa | aAa | 1 | 1 | P.2 | 0.000187 |
ORF1ab/nsp3 | 273 | I273V | Ata | Gta | 1 | 1 | P.2 | 0.000187 |
ORF1ab/nsp3 | 273 | I273del | ATA | --- | 1 | 1 | P.2 | 0.000187 |
ORF1ab/nsp3 | 273 | I273del | ATA | --- | 1 | 1 | Q.8 | 0.000165 |
ORF1ab/nsp3 | 273 | I273T | aTa | aCa | 1 | 1 | Q.8 | 0.000165 |
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CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk
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