CoV-GLUEGenomeCountriesLineagesMutationsInsertionsDeletionsUpdated:

CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF1ab/nsp3 : CodonNum = 271

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF1ab/nsp3271D271GD1089GnonsyngAtgGt4174040.9688253530-3532
ORF1ab/nsp3271D271GD1089GnonsyngATgGA417100.02398083530-3532
ORF1ab/nsp3271D271GD1089GnonsyngATgGC41730.007194243530-3532
ORF1ab/nsp3271D271ND1089NnonsynGatAat21421413530-3532
ORF1ab/nsp3271D271delD1089deldelGAT---15415413530-3532
ORF1ab/nsp3271D271DD1089DsyngaTgaC11211213530-3532
ORF1ab/nsp3271D271YD1089YnonsynGatTat10710713530-3532
ORF1ab/nsp3271D271ED1089EnonsyngaTgaA106720.6792453530-3532
ORF1ab/nsp3271D271ED1089EnonsyngaTgaG106340.3207553530-3532
ORF1ab/nsp3271D271AD1089AnonsyngAtgCt585813530-3532
ORF1ab/nsp3271D271SD1089SnonsynGAtAGt13100.7692313530-3532
ORF1ab/nsp3271D271SD1089SnonsynGAtTCt1330.2307693530-3532
ORF1ab/nsp3271D271RD1089RnonsynGATAGA12100.8333333530-3532
ORF1ab/nsp3271D271RD1089RnonsynGAtCGt1210.08333333530-3532
ORF1ab/nsp3271D271RD1089RnonsynGATCGC1210.08333333530-3532
ORF1ab/nsp3271D271KD1089KnonsynGaTAaA101013530-3532
ORF1ab/nsp3271D271del1D1089del1delgaTga-950.5555563530-3532
ORF1ab/nsp3271D271del1D1089del1delGAT-NN930.3333333530-3532
ORF1ab/nsp3271D271del1D1089del1delGaTAa-910.1111113530-3532
ORF1ab/nsp3271D271VD1089VnonsyngAtgTt540.83530-3532
ORF1ab/nsp3271D271VD1089VnonsyngATgTC510.23530-3532
ORF1ab/nsp3271D271HD1089HnonsynGatCat4413530-3532
ORF1ab/nsp3271D271LD1089LnonsynGATCTC430.753530-3532
ORF1ab/nsp3271D271LD1089LnonsynGAtCTt410.253530-3532
ORF1ab/nsp3271D271del2D1089del2delgATg--320.6666673530-3532
ORF1ab/nsp3271D271del2D1089del2delGAT--N310.3333333530-3532
ORF1ab/nsp3271D271ID1089InonsynGATATA2213530-3532
ORF1ab/nsp3271D271PD1089PnonsynGAtCCt1113530-3532

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF1ab/nsp3271D271GgAtgGt404417All0.000077
ORF1ab/nsp3271D271GgATgGA10417All0.000002
ORF1ab/nsp3271D271GgATgGC3417All0.000001
ORF1ab/nsp3271D271NGatAat214214All0.000041
ORF1ab/nsp3271D271delGAT---154154All0.000029
ORF1ab/nsp3271D271NGatAat115115B.1.1.70.000103
ORF1ab/nsp3271D271DgaTgaC112112All0.000021
ORF1ab/nsp3271D271YGatTat107107All0.00002
ORF1ab/nsp3271D271EgaTgaA72106All0.000014
ORF1ab/nsp3271D271EgaTgaG34106All0.000007
ORF1ab/nsp3271D271GgAtgGt9798B.1.1.70.000087
ORF1ab/nsp3271D271GgATgGC198B.1.1.70.000001
ORF1ab/nsp3271D271GgAtgGt6363AY.40.000098
ORF1ab/nsp3271D271AgAtgCt5858All0.000011
ORF1ab/nsp3271D271GgAtgGt3333AY.30.000328
ORF1ab/nsp3271D271YGatTat2828B.1.20.000247
ORF1ab/nsp3271D271GgAtgGt2828B.1.617.20.000105
ORF1ab/nsp3271D271delGAT---2626B.1.1.70.000023
ORF1ab/nsp3271D271NGatAat2626B.1.4270.001313
ORF1ab/nsp3271D271GgAtgGt1323P.10.000205
ORF1ab/nsp3271D271GgATgGA1023P.10.000158
ORF1ab/nsp3271D271delGAT---2121P.1.150.004879
ORF1ab/nsp3271D271SGAtAGt1013All0.000002
ORF1ab/nsp3271D271SGAtTCt313All0.000001
ORF1ab/nsp3271D271AgAtgCt1313AY.40.00002
ORF1ab/nsp3271D271NGatAat1313AY.430.000058
ORF1ab/nsp3271D271DgaTgaC1313B.1.1.70.000012
ORF1ab/nsp3271D271EgaTgaA713B.1.1.70.000006
ORF1ab/nsp3271D271EgaTgaG613B.1.1.70.000005
ORF1ab/nsp3271D271EgaTgaA1313P.10.000205
ORF1ab/nsp3271D271RGATAGA1012All0.000002
ORF1ab/nsp3271D271RGAtCGt112All0
ORF1ab/nsp3271D271RGATCGC112All0
ORF1ab/nsp3271D271delGAT---1212P.10.000189
ORF1ab/nsp3271D271delGAT---1111B.10.000101
ORF1ab/nsp3271D271KGaTAaA1010All0.000002
ORF1ab/nsp3271D271SGAtAGt1010P.10.000158
ORF1ab/nsp3271D271NGatAat1010P.10.000158
ORF1ab/nsp3271D271KGaTAaA1010P.10.000158
ORF1ab/nsp3271D271RGATAGA1010P.10.000158
ORF1ab/nsp3271D271del1gaTga-59All0.000001
ORF1ab/nsp3271D271del1GAT-NN39All0.000001
ORF1ab/nsp3271D271del1GaTAa-19All0
ORF1ab/nsp3271D271GgAtgGt99AY.46.40.001481
ORF1ab/nsp3271D271YGatTat99B.1.4581
ORF1ab/nsp3271D271AgAtgCt99B.1.617.20.000034
ORF1ab/nsp3271D271delGAT---99B.1.6210.000797
ORF1ab/nsp3271D271GgAtgGt88AY.440.000049
ORF1ab/nsp3271D271NGatAat88AY.440.000049
ORF1ab/nsp3271D271DgaTgaC88B.1.1770.000105
ORF1ab/nsp3271D271DgaTgaC88B.1.617.20.00003
ORF1ab/nsp3271D271DgaTgaC77AY.710.003325
ORF1ab/nsp3271D271NGatAat77B.1.10.000127
ORF1ab/nsp3271D271DgaTgaC77B.1.1.4640.010309
ORF1ab/nsp3271D271GgAtgGt77B.1.2210.000497
ORF1ab/nsp3271D271EgaTgaG77B.1.5260.000165
ORF1ab/nsp3271D271EgaTgaA660.333333
ORF1ab/nsp3271D271YGatTat66AL.10.077922
ORF1ab/nsp3271D271GgAtgGt66AY.1000.000276
ORF1ab/nsp3271D271GgAtgGt66AY.1020.000159
ORF1ab/nsp3271D271YGatTat66AY.1030.000037
ORF1ab/nsp3271D271GgAtgGt66AY.1030.000037
ORF1ab/nsp3271D271GgAtgGt66AY.200.000233
ORF1ab/nsp3271D271DgaTgaC66AY.250.000036
ORF1ab/nsp3271D271GgAtgGt66AY.250.000036
ORF1ab/nsp3271D271GgAtgGt66AY.260.00017
ORF1ab/nsp3271D271DgaTgaC66AY.40.000009
ORF1ab/nsp3271D271DgaTgaC66AY.430.000027
ORF1ab/nsp3271D271EgaTgaA46B.10.000037
ORF1ab/nsp3271D271EgaTgaG26B.10.000018
ORF1ab/nsp3271D271delGAT---66B.1.10.000109
ORF1ab/nsp3271D271AgAtgCt66B.1.1.70.000005
ORF1ab/nsp3271D271GgAtgGt66B.1.2340.000792
ORF1ab/nsp3271D271GgAtgGt66B.1.2400.001293
ORF1ab/nsp3271D271VgAtgTt45All0.000001
ORF1ab/nsp3271D271VgATgTC15All0
ORF1ab/nsp3271D271YGatTat55AY.1020.000133
ORF1ab/nsp3271D271NGatAat55AY.1030.000031
ORF1ab/nsp3271D271GgAtgGt55AY.1130.000712
ORF1ab/nsp3271D271GgAtgGt55AY.390.000124
ORF1ab/nsp3271D271EgaTgaA55AY.430.000022
ORF1ab/nsp3271D271GgAtgGt55AY.430.000022
ORF1ab/nsp3271D271YGatTat55B.1.10.000091
ORF1ab/nsp3271D271delGAT---55B.1.20.000044
ORF1ab/nsp3271D271GgAtgGt55B.1.20.000044
ORF1ab/nsp3271D271EgaTgaA45B.1.3510.000119
ORF1ab/nsp3271D271EgaTgaG15B.1.3510.00003
ORF1ab/nsp3271D271GgAtgGt55B.1.5170.002135
ORF1ab/nsp3271D271delGAT---55C.370.00058
ORF1ab/nsp3271D271HGatCat44All0.000001
ORF1ab/nsp3271D271LGATCTC34All0.000001
ORF1ab/nsp3271D271LGAtCTt14All0
ORF1ab/nsp3271D271GgAtgGt44AY.1170.000338
ORF1ab/nsp3271D271DgaTgaC44AY.230.000279
ORF1ab/nsp3271D271EgaTgaG44AY.250.000024
ORF1ab/nsp3271D271GgAtgGt44AY.290.000063
ORF1ab/nsp3271D271YGatTat44AY.40.000006
ORF1ab/nsp3271D271AgAtgCt44AY.430.000018
ORF1ab/nsp3271D271delGAT---44AY.430.000018
ORF1ab/nsp3271D271GgAtgGt44AY.9.10.000335
ORF1ab/nsp3271D271YGatTat44B.10.000037
ORF1ab/nsp3271D271DgaTgaC44B.1.10.000073
ORF1ab/nsp3271D271EgaTgaG34B.1.1770.00004
ORF1ab/nsp3271D271EgaTgaA14B.1.1770.000013
ORF1ab/nsp3271D271YGatTat44B.1.258.110.001585
ORF1ab/nsp3271D271del2gATg--23All0
ORF1ab/nsp3271D271del2GAT--N13All0
ORF1ab/nsp3271D271delGAT---33AY.1000.000138
ORF1ab/nsp3271D271YGatTat33AY.250.000018
ORF1ab/nsp3271D271DgaTgaC33AY.290.000047
ORF1ab/nsp3271D271DgaTgaC33AY.30.00003
ORF1ab/nsp3271D271YGatTat33AY.430.000013
ORF1ab/nsp3271D271DgaTgaC33AY.50.000062
ORF1ab/nsp3271D271NGatAat33AY.740.000347
ORF1ab/nsp3271D271GgAtgGt23AY.9.20.000073
ORF1ab/nsp3271D271GgATgGC13AY.9.20.000037
ORF1ab/nsp3271D271EgaTgaA33B.1.1.250.001706
ORF1ab/nsp3271D271YGatTat33B.1.1.70.000003
ORF1ab/nsp3271D271NGatAat33B.1.1490.010274
ORF1ab/nsp3271D271EgaTgaA33B.1.1600.000094
ORF1ab/nsp3271D271GgAtgGt33B.1.2580.0002
ORF1ab/nsp3271D271GgAtgGt33B.1.3510.000089
ORF1ab/nsp3271D271delGAT---33B.1.617.20.000011
ORF1ab/nsp3271D271YGatTat33B.1.617.20.000011
ORF1ab/nsp3271D271DgaTgaC33P.10.000047
ORF1ab/nsp3271D271del1gaTga-220.111111
ORF1ab/nsp3271D271IGATATA22All0
ORF1ab/nsp3271D271GgAtgGt22AY.1190.000071
ORF1ab/nsp3271D271GgAtgGt22AY.1200.000074
ORF1ab/nsp3271D271GgAtgGt22AY.120.10.000642
ORF1ab/nsp3271D271GgAtgGt22AY.230.000139
ORF1ab/nsp3271D271delGAT---22AY.250.000012
ORF1ab/nsp3271D271NGatAat22AY.260.000057
ORF1ab/nsp3271D271DgaTgaC22AY.3.10.000171
ORF1ab/nsp3271D271AgAtgCt22AY.390.000049
ORF1ab/nsp3271D271YGatTat22AY.4.20.000043
ORF1ab/nsp3271D271delGAT---22AY.420.00008
ORF1ab/nsp3271D271AgAtgCt22AY.440.000012
ORF1ab/nsp3271D271DgaTgaC22AY.440.000012
ORF1ab/nsp3271D271EgaTgaA22AY.46.50.000397
ORF1ab/nsp3271D271AgAtgCt22AY.490.00639
ORF1ab/nsp3271D271GgAtgGt22AY.50.000041
ORF1ab/nsp3271D271NGatAat22AY.540.000191
ORF1ab/nsp3271D271GgAtgGt22AY.75.10.000361
ORF1ab/nsp3271D271delGAT---22AY.90.000135
ORF1ab/nsp3271D271DgaTgaC22AY.9.20.000073
ORF1ab/nsp3271D271VgATgTC12AY.9.20.000037
ORF1ab/nsp3271D271RGATCGC12AY.9.20.000037
ORF1ab/nsp3271D271VgAtgTt12AY.9.20.000037
ORF1ab/nsp3271D271LGAtCTt12AY.9.20.000037
ORF1ab/nsp3271D271RGAtCGt12AY.9.20.000037
ORF1ab/nsp3271D271LGATCTC12AY.9.20.000037
ORF1ab/nsp3271D271AgAtgCt22AY.980.000158
ORF1ab/nsp3271D271GgAtgGt22AY.98.10.000097
ORF1ab/nsp3271D271delGAT---22AZ.20.001642
ORF1ab/nsp3271D271DgaTgaC22B.10.000018
ORF1ab/nsp3271D271GgAtgGt22B.10.000018
ORF1ab/nsp3271D271EgaTgaA22B.1.10.000036
ORF1ab/nsp3271D271GgATgGC12B.1.10.000018
ORF1ab/nsp3271D271GgAtgGt12B.1.10.000018
ORF1ab/nsp3271D271delGAT---22B.1.1.1740.006757
ORF1ab/nsp3271D271YGatTat22B.1.1.3060.000877
ORF1ab/nsp3271D271GgAtgGt22B.1.1.630.000772
ORF1ab/nsp3271D271EgaTgaA22B.1.1.700.000682
ORF1ab/nsp3271D271GgAtgGt22B.1.1770.000026
ORF1ab/nsp3271D271DgaTgaC22B.1.20.000018
ORF1ab/nsp3271D271del1GAT-NN12B.1.20.000009
ORF1ab/nsp3271D271del1gaTga-12B.1.20.000009
ORF1ab/nsp3271D271EgaTgaA22B.1.2210.000142
ORF1ab/nsp3271D271delGAT---22B.1.2430.000139
ORF1ab/nsp3271D271GgAtgGt22B.1.2430.000139
ORF1ab/nsp3271D271delGAT---22B.1.3510.000059
ORF1ab/nsp3271D271delGAT---22B.1.4290.000047
ORF1ab/nsp3271D271NGatAat22B.1.4290.000047
ORF1ab/nsp3271D271GgAtgGt22B.1.4290.000047
ORF1ab/nsp3271D271AgAtgCt22B.1.4690.00722
ORF1ab/nsp3271D271EgaTgaA12B.1.617.20.000004
ORF1ab/nsp3271D271EgaTgaG12B.1.617.20.000004
ORF1ab/nsp3271D271GgAtgGt22B.60.00182
ORF1ab/nsp3271D271delGAT---22N.60.014184
ORF1ab/nsp3271D271del1gaTga-22P.1.120.000968
ORF1ab/nsp3271D271delGAT---22P.1.70.000639
ORF1ab/nsp3271D271DgaTgaC11A0.000387
ORF1ab/nsp3271D271DgaTgaC11A.10.000282
ORF1ab/nsp3271D271AgAtgCt11A.250.018182
ORF1ab/nsp3271D271NGatAat11AH.30.003802
ORF1ab/nsp3271D271PGAtCCt11All0
ORF1ab/nsp3271D271delGAT---11AY.1020.000027
ORF1ab/nsp3271D271DgaTgaC11AY.1020.000027
ORF1ab/nsp3271D271EgaTgaG11AY.1020.000027
ORF1ab/nsp3271D271AgAtgCt11AY.1020.000027
ORF1ab/nsp3271D271YGatTat11AY.1090.00074
ORF1ab/nsp3271D271NGatAat11AY.1090.00074
ORF1ab/nsp3271D271delGAT---11AY.110.001339
ORF1ab/nsp3271D271SGAtTCt11AY.1130.000142
ORF1ab/nsp3271D271HGatCat11AY.1130.000142
ORF1ab/nsp3271D271YGatTat11AY.1130.000142
ORF1ab/nsp3271D271PGAtCCt11AY.1130.000142
ORF1ab/nsp3271D271delGAT---11AY.1180.000063
ORF1ab/nsp3271D271NGatAat11AY.1190.000035
ORF1ab/nsp3271D271DgaTgaC11AY.1190.000035
ORF1ab/nsp3271D271DgaTgaC11AY.1200.000037
ORF1ab/nsp3271D271NGatAat11AY.1200.000037
ORF1ab/nsp3271D271delGAT---11AY.1210.000135
ORF1ab/nsp3271D271DgaTgaC11AY.1210.000135
ORF1ab/nsp3271D271GgAtgGt11AY.140.000088
ORF1ab/nsp3271D271delGAT---11AY.230.00007
ORF1ab/nsp3271D271delGAT---11AY.240.000431
ORF1ab/nsp3271D271DgaTgaC11AY.260.000028
ORF1ab/nsp3271D271delGAT---11AY.260.000028
ORF1ab/nsp3271D271YGatTat11AY.260.000028
ORF1ab/nsp3271D271GgAtgGt11AY.270.000065
ORF1ab/nsp3271D271NGatAat11AY.270.000065
ORF1ab/nsp3271D271EgaTgaG11AY.290.000016
ORF1ab/nsp3271D271YGatTat11AY.30.00001
ORF1ab/nsp3271D271EgaTgaG11AY.330.000067
ORF1ab/nsp3271D271YGatTat11AY.330.000067
ORF1ab/nsp3271D271GgAtgGt11AY.380.000499
ORF1ab/nsp3271D271DgaTgaC11AY.390.000025
ORF1ab/nsp3271D271YGatTat11AY.390.000025
ORF1ab/nsp3271D271NGatAat11AY.390.000025
ORF1ab/nsp3271D271GgAtgGt11AY.39.10.00004
ORF1ab/nsp3271D271EgaTgaG11AY.40.000002
ORF1ab/nsp3271D271NGatAat11AY.40.000002
ORF1ab/nsp3271D271NGatAat11AY.4.20.000022
ORF1ab/nsp3271D271GgAtgGt11AY.4.50.000107
ORF1ab/nsp3271D271NGatAat11AY.4.50.000107
ORF1ab/nsp3271D271AgAtgCt11AY.400.000964
ORF1ab/nsp3271D271NGatAat11AY.420.00004
ORF1ab/nsp3271D271EgaTgaA11AY.420.00004
ORF1ab/nsp3271D271LGATCTC11AY.440.000006
ORF1ab/nsp3271D271GgAtgGt11AY.450.000122
ORF1ab/nsp3271D271EgaTgaG11AY.450.000122
ORF1ab/nsp3271D271delGAT---11AY.450.000122
ORF1ab/nsp3271D271AgAtgCt11AY.46.40.000165
ORF1ab/nsp3271D271SGAtTCt11AY.46.60.000072
ORF1ab/nsp3271D271YGatTat11AY.50.000021
ORF1ab/nsp3271D271AgAtgCt11AY.50.000021
ORF1ab/nsp3271D271GgAtgGt11AY.5.40.000277
ORF1ab/nsp3271D271GgAtgGt11AY.530.000288
ORF1ab/nsp3271D271HGatCat11AY.540.000095
ORF1ab/nsp3271D271GgAtgGt11AY.540.000095
ORF1ab/nsp3271D271EgaTgaA11AY.590.00053
ORF1ab/nsp3271D271delGAT---11AY.590.00053
ORF1ab/nsp3271D271GgAtgGt11AY.590.00053
ORF1ab/nsp3271D271AgAtgCt11AY.610.000105
ORF1ab/nsp3271D271EgaTgaA11AY.610.000105
ORF1ab/nsp3271D271DgaTgaC11AY.650.000533
ORF1ab/nsp3271D271GgAtgGt11AY.650.000533
ORF1ab/nsp3271D271delGAT---11AY.670.000464
ORF1ab/nsp3271D271YGatTat11AY.680.000274
ORF1ab/nsp3271D271delGAT---11AY.680.000274
ORF1ab/nsp3271D271EgaTgaA11AY.7.20.000559
ORF1ab/nsp3271D271AgAtgCt11AY.740.000116
ORF1ab/nsp3271D271GgAtgGt11AY.750.000056
ORF1ab/nsp3271D271GgAtgGt11AY.770.001127
ORF1ab/nsp3271D271delGAT---11AY.840.000437
ORF1ab/nsp3271D271DgaTgaC11AY.850.000427
ORF1ab/nsp3271D271YGatTat11AY.850.000427
ORF1ab/nsp3271D271GgAtgGt11AY.90.000068
ORF1ab/nsp3271D271YGatTat11AY.90.000068
ORF1ab/nsp3271D271DgaTgaC11AY.98.10.000048
ORF1ab/nsp3271D271IGATATA11AY.990.001049
ORF1ab/nsp3271D271NGatAat11AY.99.20.000092
ORF1ab/nsp3271D271del1GaTAa-11B0.000128
ORF1ab/nsp3271D271NGatAat11B.10.000009
ORF1ab/nsp3271D271AgAtgCt11B.10.000009
ORF1ab/nsp3271D271VgAtgTt11B.10.000009
ORF1ab/nsp3271D271DgaTgaC11B.1.1.10.000327
ORF1ab/nsp3271D271GgAtgGt11B.1.1.100.001115
ORF1ab/nsp3271D271HGatCat11B.1.1.1150.008929
ORF1ab/nsp3271D271GgAtgGt11B.1.1.1710.003676
ORF1ab/nsp3271D271EgaTgaA11B.1.1.1890.001513
ORF1ab/nsp3271D271EgaTgaA11B.1.1.1900.05
ORF1ab/nsp3271D271GgAtgGt11B.1.1.2070.001182
ORF1ab/nsp3271D271YGatTat11B.1.1.2140.000055
ORF1ab/nsp3271D271AgAtgCt11B.1.1.2140.000055
ORF1ab/nsp3271D271GgAtgGt11B.1.1.2180.007692
ORF1ab/nsp3271D271YGatTat11B.1.1.2220.000204
ORF1ab/nsp3271D271GgAtgGt11B.1.1.2400.004695
ORF1ab/nsp3271D271DgaTgaC11B.1.1.2680.014925
ORF1ab/nsp3271D271EgaTgaA11B.1.1.2690.001353
ORF1ab/nsp3271D271IGATATA11B.1.1.3060.000438
ORF1ab/nsp3271D271AgAtgCt11B.1.1.3060.000438
ORF1ab/nsp3271D271delGAT---11B.1.1.3060.000438
ORF1ab/nsp3271D271AgAtgCt11B.1.1.3170.000412
ORF1ab/nsp3271D271delGAT---11B.1.1.330.000421
ORF1ab/nsp3271D271NGatAat11B.1.1.330.000421
ORF1ab/nsp3271D271delGAT---11B.1.1.3480.000796
ORF1ab/nsp3271D271GgAtgGt11B.1.1.3490.010309
ORF1ab/nsp3271D271DgaTgaC11B.1.1.4340.000349
ORF1ab/nsp3271D271EgaTgaA11B.1.1.4450.037037
ORF1ab/nsp3271D271del2gATg--11B.1.1.70.000001
ORF1ab/nsp3271D271delGAT---11B.1.1770.000013
ORF1ab/nsp3271D271AgAtgCt11B.1.177.100.000878
ORF1ab/nsp3271D271EgaTgaA11B.1.177.440.000519
ORF1ab/nsp3271D271NGatAat11B.1.1890.004292
ORF1ab/nsp3271D271NGatAat11B.1.20.000009
ORF1ab/nsp3271D271AgAtgCt11B.1.20.000009
ORF1ab/nsp3271D271del2gATg--11B.1.20.000009
ORF1ab/nsp3271D271EgaTgaG11B.1.20.000009
ORF1ab/nsp3271D271delGAT---11B.1.2180.005155
ORF1ab/nsp3271D271AgAtgCt11B.1.221.40.004167
ORF1ab/nsp3271D271YGatTat11B.1.2340.000132
ORF1ab/nsp3271D271DgaTgaC11B.1.2580.000067
ORF1ab/nsp3271D271AgAtgCt11B.1.258.170.000104
ORF1ab/nsp3271D271DgaTgaC11B.1.3110.000275
ORF1ab/nsp3271D271YGatTat11B.1.3440.008197
ORF1ab/nsp3271D271NGatAat11B.1.3510.00003
ORF1ab/nsp3271D271GgAtgGt11B.1.351.20.000303
ORF1ab/nsp3271D271delGAT---11B.1.360.000146
ORF1ab/nsp3271D271EgaTgaA11B.1.36.220.001208
ORF1ab/nsp3271D271GgAtgGt11B.1.3610.001289
ORF1ab/nsp3271D271GgAtgGt11B.1.3690.000285
ORF1ab/nsp3271D271EgaTgaA11B.1.3750.00082
ORF1ab/nsp3271D271YGatTat11B.1.4270.00005
ORF1ab/nsp3271D271EgaTgaA11B.1.4270.00005
ORF1ab/nsp3271D271DgaTgaC11B.1.4280.00102
ORF1ab/nsp3271D271EgaTgaG11B.1.4290.000024
ORF1ab/nsp3271D271NGatAat11B.1.438.10.000107
ORF1ab/nsp3271D271delGAT---11B.1.5170.000427
ORF1ab/nsp3271D271EgaTgaA11B.1.5240.001406
ORF1ab/nsp3271D271EgaTgaG11B.1.5250.000113
ORF1ab/nsp3271D271GgAtgGt11B.1.5260.000024
ORF1ab/nsp3271D271AgAtgCt11B.1.5260.000024
ORF1ab/nsp3271D271EgaTgaA11B.1.5330.009615
ORF1ab/nsp3271D271DgaTgaC11B.1.5960.000087
ORF1ab/nsp3271D271YGatTat11B.1.5960.000087
ORF1ab/nsp3271D271delGAT---11B.1.5960.000087
ORF1ab/nsp3271D271YGatTat11B.1.6090.000479
ORF1ab/nsp3271D271delGAT---11B.1.617.10.000129
ORF1ab/nsp3271D271SGAtTCt11B.1.617.20.000004
ORF1ab/nsp3271D271LGATCTC11B.1.617.20.000004
ORF1ab/nsp3271D271VgAtgTt11B.1.617.20.000004
ORF1ab/nsp3271D271HGatCat11B.1.617.20.000004
ORF1ab/nsp3271D271delGAT---11B.1.621.10.000506
ORF1ab/nsp3271D271delGAT---11B.1.6270.00202
ORF1ab/nsp3271D271EgaTgaG11B.100.008264
ORF1ab/nsp3271D271DgaTgaC11B.290.003509
ORF1ab/nsp3271D271YGatTat11B.30.000831
ORF1ab/nsp3271D271YGatTat11B.40.002208
ORF1ab/nsp3271D271DgaTgaC11C.36.30.000567
ORF1ab/nsp3271D271YGatTat11D.20.000075
ORF1ab/nsp3271D271delGAT---11D.20.000075
ORF1ab/nsp3271D271EgaTgaA11L.30.003546
ORF1ab/nsp3271D271del1GAT-NN11P.10.000016
ORF1ab/nsp3271D271del2GAT--N11P.10.000016
ORF1ab/nsp3271D271delGAT---11P.1.10.000318
ORF1ab/nsp3271D271GgAtgGt11P.1.10.000318
ORF1ab/nsp3271D271DgaTgaC11P.1.10.000318
ORF1ab/nsp3271D271delGAT---11P.1.100.000269
ORF1ab/nsp3271D271delGAT---11P.1.130.000898
ORF1ab/nsp3271D271del1GAT-NN11P.1.150.000232
ORF1ab/nsp3271D271EgaTgaA11P.1.150.000232
ORF1ab/nsp3271D271EgaTgaG11P.1.70.000319
ORF1ab/nsp3271D271EgaTgaA11P.20.000187
ORF1ab/nsp3271D271delGAT---11P.20.000187
ORF1ab/nsp3271D271VgAtgTt11P.20.000187
ORF1ab/nsp3271D271GgAtgGt11Q.30.000145
ORF1ab/nsp3271D271NGatAat11Q.80.000165
ORF1ab/nsp3271D271delGAT---11Q.80.000165

CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk

CoV-GLUE uses sequence data from GISAID. GISAID data provided via this web application is subject to GISAID's Terms and Conditions.