CoV-GLUE | Mutations | Mutation
Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):
ORF | CodonNum | Mut | ORF1abMut | MutType | RefCodon | MutCodon | AACount | CodonCount | CodonProp | Genome Position |
ORF1ab/nsp3 | 270 | D270N | D1088N | nonsyn | Gat | Aat | 1492 | 1492 | 1 | 3527-3529 |
ORF1ab/nsp3 | 270 | D270D | D1088D | syn | gaT | gaC | 426 | 426 | 1 | 3527-3529 |
ORF1ab/nsp3 | 270 | D270G | D1088G | nonsyn | gAt | gGt | 191 | 191 | 1 | 3527-3529 |
ORF1ab/nsp3 | 270 | D270del | D1088del | del | GAT | --- | 145 | 145 | 1 | 3527-3529 |
ORF1ab/nsp3 | 270 | D270Y | D1088Y | nonsyn | Gat | Tat | 119 | 118 | 0.991597 | 3527-3529 |
ORF1ab/nsp3 | 270 | D270Y | D1088Y | nonsyn | GaT | TaC | 119 | 1 | 0.00840336 | 3527-3529 |
ORF1ab/nsp3 | 270 | D270A | D1088A | nonsyn | gAt | gCt | 108 | 108 | 1 | 3527-3529 |
ORF1ab/nsp3 | 270 | D270E | D1088E | nonsyn | gaT | gaA | 45 | 28 | 0.622222 | 3527-3529 |
ORF1ab/nsp3 | 270 | D270E | D1088E | nonsyn | gaT | gaG | 45 | 17 | 0.377778 | 3527-3529 |
ORF1ab/nsp3 | 270 | D270V | D1088V | nonsyn | gAt | gTt | 44 | 41 | 0.931818 | 3527-3529 |
ORF1ab/nsp3 | 270 | D270V | D1088V | nonsyn | gAT | gTC | 44 | 2 | 0.0454545 | 3527-3529 |
ORF1ab/nsp3 | 270 | D270V | D1088V | nonsyn | gAT | gTG | 44 | 1 | 0.0227273 | 3527-3529 |
ORF1ab/nsp3 | 270 | D270H | D1088H | nonsyn | Gat | Cat | 6 | 6 | 1 | 3527-3529 |
ORF1ab/nsp3 | 270 | D270del2 | D1088del2 | del | gAT | g-- | 6 | 5 | 0.833333 | 3527-3529 |
ORF1ab/nsp3 | 270 | D270del2 | D1088del2 | del | GAt | --t | 6 | 1 | 0.166667 | 3527-3529 |
ORF1ab/nsp3 | 270 | D270del1 | D1088del1 | del | gAt | g-t | 5 | 2 | 0.4 | 3527-3529 |
ORF1ab/nsp3 | 270 | D270del1 | D1088del1 | del | gaT | ga- | 5 | 1 | 0.2 | 3527-3529 |
ORF1ab/nsp3 | 270 | D270del1 | D1088del1 | del | gAT | g-N | 5 | 1 | 0.2 | 3527-3529 |
ORF1ab/nsp3 | 270 | D270del1 | D1088del1 | del | GAT | -NN | 5 | 1 | 0.2 | 3527-3529 |
ORF1ab/nsp3 | 270 | D270C | D1088C | nonsyn | GAt | TGt | 4 | 4 | 1 | 3527-3529 |
ORF1ab/nsp3 | 270 | D270L | D1088L | nonsyn | GAt | CTt | 2 | 2 | 1 | 3527-3529 |
ORF1ab/nsp3 | 270 | D270F | D1088F | nonsyn | GAt | TTt | 2 | 2 | 1 | 3527-3529 |
ORF1ab/nsp3 | 270 | D270K | D1088K | nonsyn | GaT | AaA | 1 | 1 | 1 | 3527-3529 |
ORF1ab/nsp3 | 270 | D270S | D1088S | nonsyn | GAt | TCt | 1 | 1 | 1 | 3527-3529 |
Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):
ORF | CodonNum | Mut | RefCodon | MutCodon | CodonCount | AACount | Lineage | LineageCodonProp |
ORF1ab/nsp3 | 270 | D270N | Gat | Aat | 1492 | 1492 | All | 0.000285 |
ORF1ab/nsp3 | 270 | D270N | Gat | Aat | 1265 | 1265 | B.1.409 | 0.988281 |
ORF1ab/nsp3 | 270 | D270D | gaT | gaC | 426 | 426 | All | 0.000081 |
ORF1ab/nsp3 | 270 | D270G | gAt | gGt | 191 | 191 | All | 0.000037 |
ORF1ab/nsp3 | 270 | D270del | GAT | --- | 145 | 145 | All | 0.000028 |
ORF1ab/nsp3 | 270 | D270Y | Gat | Tat | 118 | 119 | All | 0.000023 |
ORF1ab/nsp3 | 270 | D270Y | GaT | TaC | 1 | 119 | All | 0 |
ORF1ab/nsp3 | 270 | D270A | gAt | gCt | 108 | 108 | All | 0.000021 |
ORF1ab/nsp3 | 270 | D270N | Gat | Aat | 94 | 94 | B.1.1.7 | 0.000084 |
ORF1ab/nsp3 | 270 | D270D | gaT | gaC | 87 | 87 | B.1.1.7 | 0.000078 |
ORF1ab/nsp3 | 270 | D270D | gaT | gaC | 85 | 85 | AY.5 | 0.001755 |
ORF1ab/nsp3 | 270 | D270Y | Gat | Tat | 69 | 70 | B.1.1.7 | 0.000062 |
ORF1ab/nsp3 | 270 | D270Y | GaT | TaC | 1 | 70 | B.1.1.7 | 0.000001 |
ORF1ab/nsp3 | 270 | D270G | gAt | gGt | 69 | 69 | B.1.1.7 | 0.000062 |
ORF1ab/nsp3 | 270 | D270D | gaT | gaC | 46 | 46 | AY.25 | 0.000277 |
ORF1ab/nsp3 | 270 | D270D | gaT | gaC | 46 | 46 | AY.4 | 0.000072 |
ORF1ab/nsp3 | 270 | D270E | gaT | gaA | 28 | 45 | All | 0.000005 |
ORF1ab/nsp3 | 270 | D270E | gaT | gaG | 17 | 45 | All | 0.000003 |
ORF1ab/nsp3 | 270 | D270V | gAt | gTt | 41 | 44 | All | 0.000008 |
ORF1ab/nsp3 | 270 | D270V | gAT | gTC | 2 | 44 | All | 0 |
ORF1ab/nsp3 | 270 | D270V | gAT | gTG | 1 | 44 | All | 0 |
ORF1ab/nsp3 | 270 | D270N | Gat | Aat | 30 | 30 | B.1 | 0.000275 |
ORF1ab/nsp3 | 270 | D270G | gAt | gGt | 25 | 25 | AY.4 | 0.000039 |
ORF1ab/nsp3 | 270 | D270del | GAT | --- | 24 | 24 | B.1.1.7 | 0.000021 |
ORF1ab/nsp3 | 270 | D270E | gaT | gaA | 21 | 21 | B.1.1.7 | 0.000019 |
ORF1ab/nsp3 | 270 | D270V | gAt | gTt | 20 | 20 | B.1.526 | 0.00047 |
ORF1ab/nsp3 | 270 | D270D | gaT | gaC | 19 | 19 | AY.43 | 0.000084 |
ORF1ab/nsp3 | 270 | D270D | gaT | gaC | 19 | 19 | B.1.177.32 | 0.025641 |
ORF1ab/nsp3 | 270 | D270del | GAT | --- | 19 | 19 | P.1.15 | 0.004414 |
ORF1ab/nsp3 | 270 | D270N | Gat | Aat | 16 | 16 | AY.23 | 0.001116 |
ORF1ab/nsp3 | 270 | D270A | gAt | gCt | 16 | 16 | B.1 | 0.000147 |
ORF1ab/nsp3 | 270 | D270A | gAt | gCt | 16 | 16 | B.1.258 | 0.001065 |
ORF1ab/nsp3 | 270 | D270D | gaT | gaC | 15 | 15 | AY.68 | 0.004106 |
ORF1ab/nsp3 | 270 | D270G | gAt | gGt | 14 | 14 | AY.119 | 0.000494 |
ORF1ab/nsp3 | 270 | D270A | gAt | gCt | 14 | 14 | B.1.1.7 | 0.000013 |
ORF1ab/nsp3 | 270 | D270del | GAT | --- | 14 | 14 | P.1 | 0.000221 |
ORF1ab/nsp3 | 270 | D270A | gAt | gCt | 13 | 13 | B.1.177.42 | 0.011628 |
ORF1ab/nsp3 | 270 | D270Y | Gat | Tat | 11 | 11 | AY.103 | 0.000068 |
ORF1ab/nsp3 | 270 | D270del | GAT | --- | 10 | 10 | B.1 | 0.000092 |
ORF1ab/nsp3 | 270 | D270D | gaT | gaC | 10 | 10 | B.1.2 | 0.000088 |
ORF1ab/nsp3 | 270 | D270del | GAT | --- | 10 | 10 | B.1.621 | 0.000885 |
ORF1ab/nsp3 | 270 | D270D | gaT | gaC | 9 | 9 | AY.103 | 0.000056 |
ORF1ab/nsp3 | 270 | D270D | gaT | gaC | 9 | 9 | AY.106 | 0.003014 |
ORF1ab/nsp3 | 270 | D270V | gAt | gTt | 9 | 9 | AY.4 | 0.000014 |
ORF1ab/nsp3 | 270 | D270D | gaT | gaC | 9 | 9 | B.1.617.2 | 0.000034 |
ORF1ab/nsp3 | 270 | D270N | Gat | Aat | 9 | 9 | B.1.617.2 | 0.000034 |
ORF1ab/nsp3 | 270 | D270N | Gat | Aat | 8 | 8 | AY.43 | 0.000035 |
ORF1ab/nsp3 | 270 | D270N | Gat | Aat | 8 | 8 | B.1.177.9 | 0.010652 |
ORF1ab/nsp3 | 270 | D270A | gAt | gCt | 8 | 8 | B.1.617.2 | 0.00003 |
ORF1ab/nsp3 | 270 | D270G | gAt | gGt | 7 | 7 | AY.100 | 0.000322 |
ORF1ab/nsp3 | 270 | D270A | gAt | gCt | 7 | 7 | AY.4 | 0.000011 |
ORF1ab/nsp3 | 270 | D270G | gAt | gGt | 7 | 7 | AY.44 | 0.000043 |
ORF1ab/nsp3 | 270 | D270Y | Gat | Tat | 7 | 7 | AY.5 | 0.000145 |
ORF1ab/nsp3 | 270 | D270A | gAt | gCt | 7 | 7 | B.1.177 | 0.000092 |
ORF1ab/nsp3 | 270 | D270N | Gat | Aat | 7 | 7 | B.1.575.1 | 0.017073 |
ORF1ab/nsp3 | 270 | D270G | gAt | gGt | 7 | 7 | B.1.617.2 | 0.000026 |
ORF1ab/nsp3 | 270 | D270H | Gat | Cat | 6 | 6 | All | 0.000001 |
ORF1ab/nsp3 | 270 | D270del2 | gAT | g-- | 5 | 6 | All | 0.000001 |
ORF1ab/nsp3 | 270 | D270del2 | GAt | --t | 1 | 6 | All | 0 |
ORF1ab/nsp3 | 270 | D270G | gAt | gGt | 6 | 6 | AY.103 | 0.000037 |
ORF1ab/nsp3 | 270 | D270G | gAt | gGt | 6 | 6 | AY.20 | 0.000233 |
ORF1ab/nsp3 | 270 | D270N | Gat | Aat | 6 | 6 | AY.4 | 0.000009 |
ORF1ab/nsp3 | 270 | D270D | gaT | gaC | 6 | 6 | AY.4.2 | 0.00013 |
ORF1ab/nsp3 | 270 | D270D | gaT | gaC | 6 | 6 | AY.52 | 0.004886 |
ORF1ab/nsp3 | 270 | D270N | Gat | Aat | 6 | 6 | B.1.177 | 0.000079 |
ORF1ab/nsp3 | 270 | D270del | GAT | --- | 6 | 6 | B.1.2 | 0.000053 |
ORF1ab/nsp3 | 270 | D270del1 | gAt | g-t | 2 | 5 | All | 0 |
ORF1ab/nsp3 | 270 | D270del1 | gAT | g-N | 1 | 5 | All | 0 |
ORF1ab/nsp3 | 270 | D270del1 | gaT | ga- | 1 | 5 | All | 0 |
ORF1ab/nsp3 | 270 | D270del1 | GAT | -NN | 1 | 5 | All | 0 |
ORF1ab/nsp3 | 270 | D270G | gAt | gGt | 5 | 5 | AY.43 | 0.000022 |
ORF1ab/nsp3 | 270 | D270D | gaT | gaC | 5 | 5 | B.1 | 0.000046 |
ORF1ab/nsp3 | 270 | D270del | GAT | --- | 5 | 5 | B.1.1 | 0.000091 |
ORF1ab/nsp3 | 270 | D270Y | Gat | Tat | 5 | 5 | B.1.1.33 | 0.002104 |
ORF1ab/nsp3 | 270 | D270V | gAt | gTt | 4 | 5 | B.1.617.2 | 0.000015 |
ORF1ab/nsp3 | 270 | D270V | gAT | gTC | 1 | 5 | B.1.617.2 | 0.000004 |
ORF1ab/nsp3 | 270 | D270del | GAT | --- | 5 | 5 | C.37 | 0.00058 |
ORF1ab/nsp3 | 270 | D270C | GAt | TGt | 4 | 4 | All | 0.000001 |
ORF1ab/nsp3 | 270 | D270E | gaT | gaG | 4 | 4 | AY.4 | 0.000006 |
ORF1ab/nsp3 | 270 | D270G | gAt | gGt | 4 | 4 | B.1 | 0.000037 |
ORF1ab/nsp3 | 270 | D270E | gaT | gaG | 4 | 4 | B.1.1.25 | 0.002274 |
ORF1ab/nsp3 | 270 | D270N | Gat | Aat | 4 | 4 | B.1.177.82 | 0.001909 |
ORF1ab/nsp3 | 270 | D270N | Gat | Aat | 4 | 4 | B.1.237 | 0.0199 |
ORF1ab/nsp3 | 270 | D270A | gAt | gCt | 4 | 4 | B.1.243 | 0.000278 |
ORF1ab/nsp3 | 270 | D270Y | Gat | Tat | 4 | 4 | B.1.617.2 | 0.000015 |
ORF1ab/nsp3 | 270 | D270N | Gat | Aat | 4 | 4 | P.1 | 0.000063 |
ORF1ab/nsp3 | 270 | D270del | GAT | --- | 3 | 3 | AY.100 | 0.000138 |
ORF1ab/nsp3 | 270 | D270Y | Gat | Tat | 3 | 3 | AY.3 | 0.00003 |
ORF1ab/nsp3 | 270 | D270D | gaT | gaC | 3 | 3 | AY.39 | 0.000074 |
ORF1ab/nsp3 | 270 | D270del | GAT | --- | 3 | 3 | AY.43 | 0.000013 |
ORF1ab/nsp3 | 270 | D270D | gaT | gaC | 3 | 3 | AY.44 | 0.000018 |
ORF1ab/nsp3 | 270 | D270N | Gat | Aat | 3 | 3 | AY.44 | 0.000018 |
ORF1ab/nsp3 | 270 | D270G | gAt | gGt | 3 | 3 | AY.46.5 | 0.000595 |
ORF1ab/nsp3 | 270 | D270Y | Gat | Tat | 3 | 3 | B.1 | 0.000027 |
ORF1ab/nsp3 | 270 | D270D | gaT | gaC | 3 | 3 | B.1.1 | 0.000054 |
ORF1ab/nsp3 | 270 | D270N | Gat | Aat | 3 | 3 | B.1.1.222 | 0.000612 |
ORF1ab/nsp3 | 270 | D270A | gAt | gCt | 3 | 3 | B.1.2 | 0.000026 |
ORF1ab/nsp3 | 270 | D270G | gAt | gGt | 3 | 3 | B.1.258 | 0.0002 |
ORF1ab/nsp3 | 270 | D270D | gaT | gaC | 3 | 3 | B.1.530 | 0.021429 |
ORF1ab/nsp3 | 270 | D270del | GAT | --- | 3 | 3 | B.1.617.2 | 0.000011 |
ORF1ab/nsp3 | 270 | D270D | gaT | gaC | 2 | 2 | A.2.5 | 0.000998 |
ORF1ab/nsp3 | 270 | D270F | GAt | TTt | 2 | 2 | All | 0 |
ORF1ab/nsp3 | 270 | D270L | GAt | CTt | 2 | 2 | All | 0 |
ORF1ab/nsp3 | 270 | D270N | Gat | Aat | 2 | 2 | AY.102 | 0.000053 |
ORF1ab/nsp3 | 270 | D270G | gAt | gGt | 2 | 2 | AY.102 | 0.000053 |
ORF1ab/nsp3 | 270 | D270V | gAt | gTt | 2 | 2 | AY.103 | 0.000012 |
ORF1ab/nsp3 | 270 | D270D | gaT | gaC | 2 | 2 | AY.120.1 | 0.000642 |
ORF1ab/nsp3 | 270 | D270N | Gat | Aat | 2 | 2 | AY.14 | 0.000176 |
ORF1ab/nsp3 | 270 | D270Y | Gat | Tat | 2 | 2 | AY.14 | 0.000176 |
ORF1ab/nsp3 | 270 | D270G | gAt | gGt | 2 | 2 | AY.25 | 0.000012 |
ORF1ab/nsp3 | 270 | D270del | GAT | --- | 2 | 2 | AY.25 | 0.000012 |
ORF1ab/nsp3 | 270 | D270D | gaT | gaC | 2 | 2 | AY.3 | 0.00002 |
ORF1ab/nsp3 | 270 | D270E | gaT | gaG | 2 | 2 | AY.3 | 0.00002 |
ORF1ab/nsp3 | 270 | D270D | gaT | gaC | 2 | 2 | AY.42 | 0.00008 |
ORF1ab/nsp3 | 270 | D270A | gAt | gCt | 2 | 2 | AY.44 | 0.000012 |
ORF1ab/nsp3 | 270 | D270E | gaT | gaG | 1 | 2 | AY.44 | 0.000006 |
ORF1ab/nsp3 | 270 | D270E | gaT | gaA | 1 | 2 | AY.44 | 0.000006 |
ORF1ab/nsp3 | 270 | D270A | gAt | gCt | 2 | 2 | AY.62 | 0.000871 |
ORF1ab/nsp3 | 270 | D270G | gAt | gGt | 2 | 2 | AY.75.1 | 0.000361 |
ORF1ab/nsp3 | 270 | D270del | GAT | --- | 2 | 2 | AY.9 | 0.000135 |
ORF1ab/nsp3 | 270 | D270G | gAt | gGt | 2 | 2 | AY.9.2 | 0.000073 |
ORF1ab/nsp3 | 270 | D270N | Gat | Aat | 2 | 2 | AY.98.1 | 0.000097 |
ORF1ab/nsp3 | 270 | D270del | GAT | --- | 2 | 2 | AZ.2 | 0.001642 |
ORF1ab/nsp3 | 270 | D270del | GAT | --- | 2 | 2 | B.1.1.174 | 0.006757 |
ORF1ab/nsp3 | 270 | D270E | gaT | gaA | 2 | 2 | B.1.1.214 | 0.000111 |
ORF1ab/nsp3 | 270 | D270D | gaT | gaC | 2 | 2 | B.1.1.318 | 0.000604 |
ORF1ab/nsp3 | 270 | D270del2 | gAT | g-- | 2 | 2 | B.1.1.7 | 0.000002 |
ORF1ab/nsp3 | 270 | D270H | Gat | Cat | 2 | 2 | B.1.1.7 | 0.000002 |
ORF1ab/nsp3 | 270 | D270G | gAt | gGt | 2 | 2 | B.1.177 | 0.000026 |
ORF1ab/nsp3 | 270 | D270D | gaT | gaC | 2 | 2 | B.1.177 | 0.000026 |
ORF1ab/nsp3 | 270 | D270A | gAt | gCt | 2 | 2 | B.1.177.37 | 0.054054 |
ORF1ab/nsp3 | 270 | D270D | gaT | gaC | 2 | 2 | B.1.177.60 | 0.000437 |
ORF1ab/nsp3 | 270 | D270G | gAt | gGt | 2 | 2 | B.1.240 | 0.000431 |
ORF1ab/nsp3 | 270 | D270del | GAT | --- | 2 | 2 | B.1.243 | 0.000139 |
ORF1ab/nsp3 | 270 | D270D | gaT | gaC | 2 | 2 | B.1.258.17 | 0.000208 |
ORF1ab/nsp3 | 270 | D270del | GAT | --- | 2 | 2 | B.1.351 | 0.000059 |
ORF1ab/nsp3 | 270 | D270E | gaT | gaA | 2 | 2 | B.1.351 | 0.000059 |
ORF1ab/nsp3 | 270 | D270N | Gat | Aat | 2 | 2 | B.1.420 | 0.020833 |
ORF1ab/nsp3 | 270 | D270del | GAT | --- | 2 | 2 | B.1.429 | 0.000047 |
ORF1ab/nsp3 | 270 | D270D | gaT | gaC | 2 | 2 | B.1.525 | 0.000226 |
ORF1ab/nsp3 | 270 | D270Y | Gat | Tat | 2 | 2 | B.1.595 | 0.000522 |
ORF1ab/nsp3 | 270 | D270G | gAt | gGt | 2 | 2 | B.1.637 | 0.000146 |
ORF1ab/nsp3 | 270 | D270Y | Gat | Tat | 2 | 2 | D.2 | 0.00015 |
ORF1ab/nsp3 | 270 | D270G | gAt | gGt | 2 | 2 | N.5 | 0.003534 |
ORF1ab/nsp3 | 270 | D270del | GAT | --- | 2 | 2 | N.6 | 0.014184 |
ORF1ab/nsp3 | 270 | D270A | gAt | gCt | 2 | 2 | P.1.1 | 0.000635 |
ORF1ab/nsp3 | 270 | D270del2 | gAT | g-- | 2 | 2 | P.1.15 | 0.000465 |
ORF1ab/nsp3 | 270 | D270del | GAT | --- | 2 | 2 | P.1.7 | 0.000639 |
ORF1ab/nsp3 | 270 | D270N | Gat | Aat | 1 | 1 | A.1 | 0.000282 |
ORF1ab/nsp3 | 270 | D270V | gAt | gTt | 1 | 1 | AD.2 | 0.000219 |
ORF1ab/nsp3 | 270 | D270N | Gat | Aat | 1 | 1 | AE.8 | 0.000489 |
ORF1ab/nsp3 | 270 | D270S | GAt | TCt | 1 | 1 | All | 0 |
ORF1ab/nsp3 | 270 | D270K | GaT | AaA | 1 | 1 | All | 0 |
ORF1ab/nsp3 | 270 | D270D | gaT | gaC | 1 | 1 | AY.100 | 0.000046 |
ORF1ab/nsp3 | 270 | D270D | gaT | gaC | 1 | 1 | AY.102 | 0.000027 |
ORF1ab/nsp3 | 270 | D270del | GAT | --- | 1 | 1 | AY.102 | 0.000027 |
ORF1ab/nsp3 | 270 | D270N | Gat | Aat | 1 | 1 | AY.103 | 0.000006 |
ORF1ab/nsp3 | 270 | D270D | gaT | gaC | 1 | 1 | AY.108 | 0.001103 |
ORF1ab/nsp3 | 270 | D270del | GAT | --- | 1 | 1 | AY.11 | 0.001339 |
ORF1ab/nsp3 | 270 | D270S | GAt | TCt | 1 | 1 | AY.113 | 0.000142 |
ORF1ab/nsp3 | 270 | D270Y | Gat | Tat | 1 | 1 | AY.113 | 0.000142 |
ORF1ab/nsp3 | 270 | D270A | gAt | gCt | 1 | 1 | AY.113 | 0.000142 |
ORF1ab/nsp3 | 270 | D270E | gaT | gaG | 1 | 1 | AY.114 | 0.000231 |
ORF1ab/nsp3 | 270 | D270del | GAT | --- | 1 | 1 | AY.118 | 0.000063 |
ORF1ab/nsp3 | 270 | D270D | gaT | gaC | 1 | 1 | AY.119 | 0.000035 |
ORF1ab/nsp3 | 270 | D270A | gAt | gCt | 1 | 1 | AY.119 | 0.000035 |
ORF1ab/nsp3 | 270 | D270D | gaT | gaC | 1 | 1 | AY.120.2.1 | 0.000498 |
ORF1ab/nsp3 | 270 | D270G | gAt | gGt | 1 | 1 | AY.14 | 0.000088 |
ORF1ab/nsp3 | 270 | D270A | gAt | gCt | 1 | 1 | AY.14 | 0.000088 |
ORF1ab/nsp3 | 270 | D270A | gAt | gCt | 1 | 1 | AY.20 | 0.000039 |
ORF1ab/nsp3 | 270 | D270del | GAT | --- | 1 | 1 | AY.23 | 0.00007 |
ORF1ab/nsp3 | 270 | D270del | GAT | --- | 1 | 1 | AY.24 | 0.000431 |
ORF1ab/nsp3 | 270 | D270N | Gat | Aat | 1 | 1 | AY.25 | 0.000006 |
ORF1ab/nsp3 | 270 | D270del1 | GAT | -NN | 1 | 1 | AY.25 | 0.000006 |
ORF1ab/nsp3 | 270 | D270A | gAt | gCt | 1 | 1 | AY.25 | 0.000006 |
ORF1ab/nsp3 | 270 | D270del | GAT | --- | 1 | 1 | AY.26 | 0.000028 |
ORF1ab/nsp3 | 270 | D270D | gaT | gaC | 1 | 1 | AY.26 | 0.000028 |
ORF1ab/nsp3 | 270 | D270D | gaT | gaC | 1 | 1 | AY.27 | 0.000065 |
ORF1ab/nsp3 | 270 | D270D | gaT | gaC | 1 | 1 | AY.29 | 0.000016 |
ORF1ab/nsp3 | 270 | D270G | gAt | gGt | 1 | 1 | AY.3 | 0.00001 |
ORF1ab/nsp3 | 270 | D270N | Gat | Aat | 1 | 1 | AY.3 | 0.00001 |
ORF1ab/nsp3 | 270 | D270A | gAt | gCt | 1 | 1 | AY.3 | 0.00001 |
ORF1ab/nsp3 | 270 | D270D | gaT | gaC | 1 | 1 | AY.30 | 0.000396 |
ORF1ab/nsp3 | 270 | D270V | gAt | gTt | 1 | 1 | AY.34 | 0.000097 |
ORF1ab/nsp3 | 270 | D270D | gaT | gaC | 1 | 1 | AY.36 | 0.000148 |
ORF1ab/nsp3 | 270 | D270H | Gat | Cat | 1 | 1 | AY.4 | 0.000002 |
ORF1ab/nsp3 | 270 | D270Y | Gat | Tat | 1 | 1 | AY.4 | 0.000002 |
ORF1ab/nsp3 | 270 | D270C | GAt | TGt | 1 | 1 | AY.4 | 0.000002 |
ORF1ab/nsp3 | 270 | D270N | Gat | Aat | 1 | 1 | AY.4.2 | 0.000022 |
ORF1ab/nsp3 | 270 | D270A | gAt | gCt | 1 | 1 | AY.43 | 0.000004 |
ORF1ab/nsp3 | 270 | D270E | gaT | gaA | 1 | 1 | AY.43 | 0.000004 |
ORF1ab/nsp3 | 270 | D270C | GAt | TGt | 1 | 1 | AY.44 | 0.000006 |
ORF1ab/nsp3 | 270 | D270H | Gat | Cat | 1 | 1 | AY.44 | 0.000006 |
ORF1ab/nsp3 | 270 | D270del | GAT | --- | 1 | 1 | AY.45 | 0.000122 |
ORF1ab/nsp3 | 270 | D270D | gaT | gaC | 1 | 1 | AY.46 | 0.000104 |
ORF1ab/nsp3 | 270 | D270Y | Gat | Tat | 1 | 1 | AY.46.3 | 0.000934 |
ORF1ab/nsp3 | 270 | D270V | gAT | gTC | 1 | 1 | AY.46.6 | 0.000072 |
ORF1ab/nsp3 | 270 | D270D | gaT | gaC | 1 | 1 | AY.47 | 0.000031 |
ORF1ab/nsp3 | 270 | D270D | gaT | gaC | 1 | 1 | AY.53 | 0.000288 |
ORF1ab/nsp3 | 270 | D270Y | Gat | Tat | 1 | 1 | AY.54 | 0.000095 |
ORF1ab/nsp3 | 270 | D270del | GAT | --- | 1 | 1 | AY.59 | 0.00053 |
ORF1ab/nsp3 | 270 | D270A | gAt | gCt | 1 | 1 | AY.64 | 0.000595 |
ORF1ab/nsp3 | 270 | D270G | gAt | gGt | 1 | 1 | AY.65 | 0.000533 |
ORF1ab/nsp3 | 270 | D270del2 | gAT | g-- | 1 | 1 | AY.67 | 0.000464 |
ORF1ab/nsp3 | 270 | D270del | GAT | --- | 1 | 1 | AY.68 | 0.000274 |
ORF1ab/nsp3 | 270 | D270D | gaT | gaC | 1 | 1 | AY.7 | 0.000196 |
ORF1ab/nsp3 | 270 | D270G | gAt | gGt | 1 | 1 | AY.7.1 | 0.000113 |
ORF1ab/nsp3 | 270 | D270A | gAt | gCt | 1 | 1 | AY.75.1 | 0.00018 |
ORF1ab/nsp3 | 270 | D270del | GAT | --- | 1 | 1 | AY.84 | 0.000437 |
ORF1ab/nsp3 | 270 | D270A | gAt | gCt | 1 | 1 | AY.9.1 | 0.000084 |
ORF1ab/nsp3 | 270 | D270F | GAt | TTt | 1 | 1 | AY.9.2 | 0.000037 |
ORF1ab/nsp3 | 270 | D270Y | Gat | Tat | 1 | 1 | AY.9.2 | 0.000037 |
ORF1ab/nsp3 | 270 | D270V | gAt | gTt | 1 | 1 | AY.9.2 | 0.000037 |
ORF1ab/nsp3 | 270 | D270C | GAt | TGt | 1 | 1 | AY.9.2 | 0.000037 |
ORF1ab/nsp3 | 270 | D270N | Gat | Aat | 1 | 1 | AY.98 | 0.000079 |
ORF1ab/nsp3 | 270 | D270L | GAt | CTt | 1 | 1 | AY.99 | 0.001049 |
ORF1ab/nsp3 | 270 | D270del1 | gAt | g-t | 1 | 1 | B.1 | 0.000009 |
ORF1ab/nsp3 | 270 | D270G | gAt | gGt | 1 | 1 | B.1.1 | 0.000018 |
ORF1ab/nsp3 | 270 | D270V | gAt | gTt | 1 | 1 | B.1.1 | 0.000018 |
ORF1ab/nsp3 | 270 | D270H | Gat | Cat | 1 | 1 | B.1.1 | 0.000018 |
ORF1ab/nsp3 | 270 | D270G | gAt | gGt | 1 | 1 | B.1.1.214 | 0.000055 |
ORF1ab/nsp3 | 270 | D270E | gaT | gaG | 1 | 1 | B.1.1.222 | 0.000204 |
ORF1ab/nsp3 | 270 | D270D | gaT | gaC | 1 | 1 | B.1.1.231 | 0.003096 |
ORF1ab/nsp3 | 270 | D270V | gAt | gTt | 1 | 1 | B.1.1.269 | 0.001353 |
ORF1ab/nsp3 | 270 | D270del | GAT | --- | 1 | 1 | B.1.1.306 | 0.000438 |
ORF1ab/nsp3 | 270 | D270L | GAt | CTt | 1 | 1 | B.1.1.306 | 0.000438 |
ORF1ab/nsp3 | 270 | D270del | GAT | --- | 1 | 1 | B.1.1.33 | 0.000421 |
ORF1ab/nsp3 | 270 | D270del | GAT | --- | 1 | 1 | B.1.1.348 | 0.000796 |
ORF1ab/nsp3 | 270 | D270D | gaT | gaC | 1 | 1 | B.1.1.374 | 0.002375 |
ORF1ab/nsp3 | 270 | D270N | Gat | Aat | 1 | 1 | B.1.1.375 | 0.011905 |
ORF1ab/nsp3 | 270 | D270D | gaT | gaC | 1 | 1 | B.1.1.378 | 0.007299 |
ORF1ab/nsp3 | 270 | D270del1 | gAt | g-t | 1 | 1 | B.1.1.433 | 0.001425 |
ORF1ab/nsp3 | 270 | D270D | gaT | gaC | 1 | 1 | B.1.1.519 | 0.00004 |
ORF1ab/nsp3 | 270 | D270D | gaT | gaC | 1 | 1 | B.1.1.70 | 0.000341 |
ORF1ab/nsp3 | 270 | D270A | gAt | gCt | 1 | 1 | B.1.111 | 0.001175 |
ORF1ab/nsp3 | 270 | D270N | Gat | Aat | 1 | 1 | B.1.160 | 0.000031 |
ORF1ab/nsp3 | 270 | D270del2 | GAt | --t | 1 | 1 | B.1.160 | 0.000031 |
ORF1ab/nsp3 | 270 | D270del | GAT | --- | 1 | 1 | B.1.177 | 0.000013 |
ORF1ab/nsp3 | 270 | D270E | gaT | gaG | 1 | 1 | B.1.177 | 0.000013 |
ORF1ab/nsp3 | 270 | D270A | gAt | gCt | 1 | 1 | B.1.177.60 | 0.000218 |
ORF1ab/nsp3 | 270 | D270N | Gat | Aat | 1 | 1 | B.1.177.73 | 0.000566 |
ORF1ab/nsp3 | 270 | D270G | gAt | gGt | 1 | 1 | B.1.177.73 | 0.000566 |
ORF1ab/nsp3 | 270 | D270del1 | gAT | g-N | 1 | 1 | B.1.2 | 0.000009 |
ORF1ab/nsp3 | 270 | D270G | gAt | gGt | 1 | 1 | B.1.2 | 0.000009 |
ORF1ab/nsp3 | 270 | D270N | Gat | Aat | 1 | 1 | B.1.2 | 0.000009 |
ORF1ab/nsp3 | 270 | D270del | GAT | --- | 1 | 1 | B.1.218 | 0.005155 |
ORF1ab/nsp3 | 270 | D270V | gAt | gTt | 1 | 1 | B.1.221 | 0.000071 |
ORF1ab/nsp3 | 270 | D270N | Gat | Aat | 1 | 1 | B.1.247 | 0.014925 |
ORF1ab/nsp3 | 270 | D270N | Gat | Aat | 1 | 1 | B.1.344 | 0.008197 |
ORF1ab/nsp3 | 270 | D270Y | Gat | Tat | 1 | 1 | B.1.351 | 0.00003 |
ORF1ab/nsp3 | 270 | D270G | gAt | gGt | 1 | 1 | B.1.351.5 | 0.0006 |
ORF1ab/nsp3 | 270 | D270G | gAt | gGt | 1 | 1 | B.1.36 | 0.000146 |
ORF1ab/nsp3 | 270 | D270del | GAT | --- | 1 | 1 | B.1.36 | 0.000146 |
ORF1ab/nsp3 | 270 | D270N | Gat | Aat | 1 | 1 | B.1.399 | 0.001934 |
ORF1ab/nsp3 | 270 | D270Y | Gat | Tat | 1 | 1 | B.1.408 | 0.00369 |
ORF1ab/nsp3 | 270 | D270D | gaT | gaC | 1 | 1 | B.1.427 | 0.00005 |
ORF1ab/nsp3 | 270 | D270G | gAt | gGt | 1 | 1 | B.1.427 | 0.00005 |
ORF1ab/nsp3 | 270 | D270G | gAt | gGt | 1 | 1 | B.1.429 | 0.000024 |
ORF1ab/nsp3 | 270 | D270D | gaT | gaC | 1 | 1 | B.1.459 | 0.004082 |
ORF1ab/nsp3 | 270 | D270D | gaT | gaC | 1 | 1 | B.1.504 | 0.03125 |
ORF1ab/nsp3 | 270 | D270del | GAT | --- | 1 | 1 | B.1.517 | 0.000427 |
ORF1ab/nsp3 | 270 | D270G | gAt | gGt | 1 | 1 | B.1.525 | 0.000113 |
ORF1ab/nsp3 | 270 | D270G | gAt | gGt | 1 | 1 | B.1.538 | 0.008065 |
ORF1ab/nsp3 | 270 | D270D | gaT | gaC | 1 | 1 | B.1.543 | 0.01 |
ORF1ab/nsp3 | 270 | D270N | Gat | Aat | 1 | 1 | B.1.577 | 0.000687 |
ORF1ab/nsp3 | 270 | D270del | GAT | --- | 1 | 1 | B.1.596 | 0.000087 |
ORF1ab/nsp3 | 270 | D270E | gaT | gaG | 1 | 1 | B.1.617.2 | 0.000004 |
ORF1ab/nsp3 | 270 | D270F | GAt | TTt | 1 | 1 | B.1.617.2 | 0.000004 |
ORF1ab/nsp3 | 270 | D270C | GAt | TGt | 1 | 1 | B.1.617.2 | 0.000004 |
ORF1ab/nsp3 | 270 | D270Y | Gat | Tat | 1 | 1 | B.1.621 | 0.000089 |
ORF1ab/nsp3 | 270 | D270N | Gat | Aat | 1 | 1 | B.1.621.1 | 0.000506 |
ORF1ab/nsp3 | 270 | D270G | gAt | gGt | 1 | 1 | B.1.621.1 | 0.000506 |
ORF1ab/nsp3 | 270 | D270del | GAT | --- | 1 | 1 | B.1.621.1 | 0.000506 |
ORF1ab/nsp3 | 270 | D270del | GAT | --- | 1 | 1 | B.1.627 | 0.00202 |
ORF1ab/nsp3 | 270 | D270G | gAt | gGt | 1 | 1 | C.37 | 0.000116 |
ORF1ab/nsp3 | 270 | D270Y | Gat | Tat | 1 | 1 | C.37 | 0.000116 |
ORF1ab/nsp3 | 270 | D270N | Gat | Aat | 1 | 1 | C.4 | 0.01 |
ORF1ab/nsp3 | 270 | D270del | GAT | --- | 1 | 1 | D.2 | 0.000075 |
ORF1ab/nsp3 | 270 | D270K | GaT | AaA | 1 | 1 | P.1 | 0.000016 |
ORF1ab/nsp3 | 270 | D270D | gaT | gaC | 1 | 1 | P.1 | 0.000016 |
ORF1ab/nsp3 | 270 | D270G | gAt | gGt | 1 | 1 | P.1 | 0.000016 |
ORF1ab/nsp3 | 270 | D270E | gaT | gaA | 1 | 1 | P.1 | 0.000016 |
ORF1ab/nsp3 | 270 | D270H | Gat | Cat | 1 | 1 | P.1.1 | 0.000318 |
ORF1ab/nsp3 | 270 | D270E | gaT | gaG | 1 | 1 | P.1.1 | 0.000318 |
ORF1ab/nsp3 | 270 | D270del | GAT | --- | 1 | 1 | P.1.1 | 0.000318 |
ORF1ab/nsp3 | 270 | D270del | GAT | --- | 1 | 1 | P.1.10 | 0.000269 |
ORF1ab/nsp3 | 270 | D270del | GAT | --- | 1 | 1 | P.1.13 | 0.000898 |
ORF1ab/nsp3 | 270 | D270D | gaT | gaC | 1 | 1 | P.1.14 | 0.000048 |
ORF1ab/nsp3 | 270 | D270G | gAt | gGt | 1 | 1 | P.1.14 | 0.000048 |
ORF1ab/nsp3 | 270 | D270Y | Gat | Tat | 1 | 1 | P.1.14 | 0.000048 |
ORF1ab/nsp3 | 270 | D270del1 | gaT | ga- | 1 | 1 | P.1.15 | 0.000232 |
ORF1ab/nsp3 | 270 | D270E | gaT | gaG | 1 | 1 | P.1.17.1 | 0.000875 |
ORF1ab/nsp3 | 270 | D270V | gAT | gTG | 1 | 1 | P.1.17.1 | 0.000875 |
ORF1ab/nsp3 | 270 | D270del | GAT | --- | 1 | 1 | P.2 | 0.000187 |
ORF1ab/nsp3 | 270 | D270G | gAt | gGt | 1 | 1 | Q.8 | 0.000165 |
CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk
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