CoV-GLUE | Mutations | Mutation
Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):
ORF | CodonNum | Mut | ORF1abMut | MutType | RefCodon | MutCodon | AACount | CodonCount | CodonProp | Genome Position |
ORF1ab/nsp3 | 264 | A264V | A1082V | nonsyn | gCc | gTc | 1605 | 1605 | 1 | 3509-3511 |
ORF1ab/nsp3 | 264 | A264A | A1082A | syn | gcC | gcT | 1344 | 1202 | 0.894345 | 3509-3511 |
ORF1ab/nsp3 | 264 | A264A | A1082A | syn | gcC | gcA | 1344 | 133 | 0.0989583 | 3509-3511 |
ORF1ab/nsp3 | 264 | A264A | A1082A | syn | gcC | gcG | 1344 | 9 | 0.00669643 | 3509-3511 |
ORF1ab/nsp3 | 264 | A264T | A1082T | nonsyn | Gcc | Acc | 632 | 621 | 0.982595 | 3509-3511 |
ORF1ab/nsp3 | 264 | A264T | A1082T | nonsyn | GcC | AcA | 632 | 5 | 0.00791139 | 3509-3511 |
ORF1ab/nsp3 | 264 | A264T | A1082T | nonsyn | GcC | AcT | 632 | 3 | 0.00474684 | 3509-3511 |
ORF1ab/nsp3 | 264 | A264T | A1082T | nonsyn | GcC | AcG | 632 | 3 | 0.00474684 | 3509-3511 |
ORF1ab/nsp3 | 264 | A264D | A1082D | nonsyn | gCc | gAc | 130 | 127 | 0.976923 | 3509-3511 |
ORF1ab/nsp3 | 264 | A264D | A1082D | nonsyn | gCC | gAT | 130 | 3 | 0.0230769 | 3509-3511 |
ORF1ab/nsp3 | 264 | A264del | A1082del | del | GCC | --- | 67 | 67 | 1 | 3509-3511 |
ORF1ab/nsp3 | 264 | A264S | A1082S | nonsyn | Gcc | Tcc | 44 | 28 | 0.636364 | 3509-3511 |
ORF1ab/nsp3 | 264 | A264S | A1082S | nonsyn | GCc | AGc | 44 | 13 | 0.295455 | 3509-3511 |
ORF1ab/nsp3 | 264 | A264S | A1082S | nonsyn | GCC | AGT | 44 | 3 | 0.0681818 | 3509-3511 |
ORF1ab/nsp3 | 264 | A264G | A1082G | nonsyn | gCc | gGc | 26 | 16 | 0.615385 | 3509-3511 |
ORF1ab/nsp3 | 264 | A264G | A1082G | nonsyn | gCC | gGG | 26 | 4 | 0.153846 | 3509-3511 |
ORF1ab/nsp3 | 264 | A264G | A1082G | nonsyn | gCC | gGT | 26 | 3 | 0.115385 | 3509-3511 |
ORF1ab/nsp3 | 264 | A264G | A1082G | nonsyn | gCC | gGA | 26 | 3 | 0.115385 | 3509-3511 |
ORF1ab/nsp3 | 264 | A264N | A1082N | nonsyn | GCc | AAc | 18 | 15 | 0.833333 | 3509-3511 |
ORF1ab/nsp3 | 264 | A264N | A1082N | nonsyn | GCC | AAT | 18 | 3 | 0.166667 | 3509-3511 |
ORF1ab/nsp3 | 264 | A264E | A1082E | nonsyn | gCC | gAA | 11 | 6 | 0.545455 | 3509-3511 |
ORF1ab/nsp3 | 264 | A264E | A1082E | nonsyn | gCC | gAG | 11 | 5 | 0.454545 | 3509-3511 |
ORF1ab/nsp3 | 264 | A264del1 | A1082del1 | del | gcC | gc- | 9 | 7 | 0.777778 | 3509-3511 |
ORF1ab/nsp3 | 264 | A264K | A1082K | nonsyn | GCC | AAG | 9 | 5 | 0.555556 | 3509-3511 |
ORF1ab/nsp3 | 264 | A264K | A1082K | nonsyn | GCC | AAA | 9 | 4 | 0.444444 | 3509-3511 |
ORF1ab/nsp3 | 264 | A264R | A1082R | nonsyn | GCC | AGG | 9 | 4 | 0.444444 | 3509-3511 |
ORF1ab/nsp3 | 264 | A264R | A1082R | nonsyn | GCC | AGA | 9 | 3 | 0.333333 | 3509-3511 |
ORF1ab/nsp3 | 264 | A264del1 | A1082del1 | del | gCc | g-c | 9 | 2 | 0.222222 | 3509-3511 |
ORF1ab/nsp3 | 264 | A264R | A1082R | nonsyn | GCC | CGA | 9 | 1 | 0.111111 | 3509-3511 |
ORF1ab/nsp3 | 264 | A264R | A1082R | nonsyn | GCc | CGc | 9 | 1 | 0.111111 | 3509-3511 |
ORF1ab/nsp3 | 264 | A264del2 | A1082del2 | del | gCC | g-- | 3 | 3 | 1 | 3509-3511 |
ORF1ab/nsp3 | 264 | A264P | A1082P | nonsyn | Gcc | Ccc | 3 | 2 | 0.666667 | 3509-3511 |
ORF1ab/nsp3 | 264 | A264P | A1082P | nonsyn | GcC | CcA | 3 | 1 | 0.333333 | 3509-3511 |
ORF1ab/nsp3 | 264 | A264C | A1082C | nonsyn | GCc | TGc | 2 | 2 | 1 | 3509-3511 |
ORF1ab/nsp3 | 264 | A264H | A1082H | nonsyn | GCc | CAc | 1 | 1 | 1 | 3509-3511 |
ORF1ab/nsp3 | 264 | A264Q | A1082Q | nonsyn | GCC | CAA | 1 | 1 | 1 | 3509-3511 |
ORF1ab/nsp3 | 264 | A264Y | A1082Y | nonsyn | GCC | TAT | 1 | 1 | 1 | 3509-3511 |
ORF1ab/nsp3 | 264 | A264X | A1082X | nonsyn | GCC | TAA | 1 | 1 | 1 | 3509-3511 |
Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):
ORF | CodonNum | Mut | RefCodon | MutCodon | CodonCount | AACount | Lineage | LineageCodonProp |
ORF1ab/nsp3 | 264 | A264V | gCc | gTc | 1605 | 1605 | All | 0.000307 |
ORF1ab/nsp3 | 264 | A264A | gcC | gcT | 1202 | 1344 | All | 0.00023 |
ORF1ab/nsp3 | 264 | A264A | gcC | gcA | 133 | 1344 | All | 0.000025 |
ORF1ab/nsp3 | 264 | A264A | gcC | gcG | 9 | 1344 | All | 0.000002 |
ORF1ab/nsp3 | 264 | A264T | Gcc | Acc | 621 | 632 | All | 0.000119 |
ORF1ab/nsp3 | 264 | A264T | GcC | AcA | 5 | 632 | All | 0.000001 |
ORF1ab/nsp3 | 264 | A264T | GcC | AcT | 3 | 632 | All | 0.000001 |
ORF1ab/nsp3 | 264 | A264T | GcC | AcG | 3 | 632 | All | 0.000001 |
ORF1ab/nsp3 | 264 | A264V | gCc | gTc | 553 | 553 | B.1.561 | 0.219532 |
ORF1ab/nsp3 | 264 | A264A | gcC | gcT | 295 | 388 | B.1.1.7 | 0.000264 |
ORF1ab/nsp3 | 264 | A264A | gcC | gcA | 93 | 388 | B.1.1.7 | 0.000083 |
ORF1ab/nsp3 | 264 | A264T | Gcc | Acc | 217 | 217 | AY.4.2 | 0.004706 |
ORF1ab/nsp3 | 264 | A264V | gCc | gTc | 201 | 201 | B.1.1.7 | 0.00018 |
ORF1ab/nsp3 | 264 | A264V | gCc | gTc | 191 | 191 | AY.4 | 0.000297 |
ORF1ab/nsp3 | 264 | A264T | Gcc | Acc | 184 | 184 | B.1.177.85 | 1 |
ORF1ab/nsp3 | 264 | A264V | gCc | gTc | 174 | 174 | B.1.429 | 0.004094 |
ORF1ab/nsp3 | 264 | A264A | gcC | gcT | 153 | 153 | B.1.637 | 0.01118 |
ORF1ab/nsp3 | 264 | A264D | gCc | gAc | 127 | 130 | All | 0.000024 |
ORF1ab/nsp3 | 264 | A264D | gCC | gAT | 3 | 130 | All | 0.000001 |
ORF1ab/nsp3 | 264 | A264A | gcC | gcT | 80 | 81 | AY.5 | 0.001652 |
ORF1ab/nsp3 | 264 | A264A | gcC | gcG | 1 | 81 | AY.5 | 0.000021 |
ORF1ab/nsp3 | 264 | A264A | gcC | gcT | 71 | 72 | AY.103 | 0.000441 |
ORF1ab/nsp3 | 264 | A264A | gcC | gcA | 1 | 72 | AY.103 | 0.000006 |
ORF1ab/nsp3 | 264 | A264del | GCC | --- | 67 | 67 | All | 0.000013 |
ORF1ab/nsp3 | 264 | A264T | Gcc | Acc | 55 | 55 | B.1.1.7 | 0.000049 |
ORF1ab/nsp3 | 264 | A264A | gcC | gcT | 51 | 52 | AY.44 | 0.00031 |
ORF1ab/nsp3 | 264 | A264A | gcC | gcA | 1 | 52 | AY.44 | 0.000006 |
ORF1ab/nsp3 | 264 | A264A | gcC | gcT | 47 | 50 | AY.3 | 0.000467 |
ORF1ab/nsp3 | 264 | A264A | gcC | gcA | 3 | 50 | AY.3 | 0.00003 |
ORF1ab/nsp3 | 264 | A264V | gCc | gTc | 50 | 50 | B.1.351 | 0.001486 |
ORF1ab/nsp3 | 264 | A264A | gcC | gcT | 48 | 48 | AY.113 | 0.006835 |
ORF1ab/nsp3 | 264 | A264T | Gcc | Acc | 47 | 47 | B.1.348 | 0.854545 |
ORF1ab/nsp3 | 264 | A264S | Gcc | Tcc | 28 | 44 | All | 0.000005 |
ORF1ab/nsp3 | 264 | A264S | GCc | AGc | 13 | 44 | All | 0.000002 |
ORF1ab/nsp3 | 264 | A264S | GCC | AGT | 3 | 44 | All | 0.000001 |
ORF1ab/nsp3 | 264 | A264V | gCc | gTc | 40 | 40 | AY.25 | 0.000241 |
ORF1ab/nsp3 | 264 | A264V | gCc | gTc | 39 | 39 | AY.26 | 0.001104 |
ORF1ab/nsp3 | 264 | A264V | gCc | gTc | 38 | 38 | B.1.617.2 | 0.000143 |
ORF1ab/nsp3 | 264 | A264V | gCc | gTc | 36 | 36 | AY.3 | 0.000358 |
ORF1ab/nsp3 | 264 | A264A | gcC | gcT | 32 | 33 | AY.4 | 0.00005 |
ORF1ab/nsp3 | 264 | A264A | gcC | gcA | 1 | 33 | AY.4 | 0.000002 |
ORF1ab/nsp3 | 264 | A264A | gcC | gcT | 33 | 33 | C.37 | 0.00383 |
ORF1ab/nsp3 | 264 | A264A | gcC | gcT | 30 | 31 | B.1.617.2 | 0.000113 |
ORF1ab/nsp3 | 264 | A264A | gcC | gcG | 1 | 31 | B.1.617.2 | 0.000004 |
ORF1ab/nsp3 | 264 | A264G | gCc | gGc | 16 | 26 | All | 0.000003 |
ORF1ab/nsp3 | 264 | A264G | gCC | gGG | 4 | 26 | All | 0.000001 |
ORF1ab/nsp3 | 264 | A264G | gCC | gGA | 3 | 26 | All | 0.000001 |
ORF1ab/nsp3 | 264 | A264G | gCC | gGT | 3 | 26 | All | 0.000001 |
ORF1ab/nsp3 | 264 | A264A | gcC | gcT | 26 | 26 | P.1.15 | 0.006041 |
ORF1ab/nsp3 | 264 | A264D | gCc | gAc | 25 | 25 | B.1.1.7 | 0.000022 |
ORF1ab/nsp3 | 264 | A264del | GCC | --- | 25 | 25 | B.1.1.7 | 0.000022 |
ORF1ab/nsp3 | 264 | A264A | gcC | gcT | 18 | 24 | B.1 | 0.000165 |
ORF1ab/nsp3 | 264 | A264A | gcC | gcA | 5 | 24 | B.1 | 0.000046 |
ORF1ab/nsp3 | 264 | A264A | gcC | gcG | 1 | 24 | B.1 | 0.000009 |
ORF1ab/nsp3 | 264 | A264A | gcC | gcT | 17 | 24 | B.1.2 | 0.00015 |
ORF1ab/nsp3 | 264 | A264A | gcC | gcA | 7 | 24 | B.1.2 | 0.000062 |
ORF1ab/nsp3 | 264 | A264A | gcC | gcT | 19 | 23 | AY.43 | 0.000084 |
ORF1ab/nsp3 | 264 | A264A | gcC | gcA | 4 | 23 | AY.43 | 0.000018 |
ORF1ab/nsp3 | 264 | A264A | gcC | gcT | 22 | 22 | B.1.77 | 1 |
ORF1ab/nsp3 | 264 | A264D | gCc | gAc | 20 | 20 | AY.102 | 0.00053 |
ORF1ab/nsp3 | 264 | A264N | GCc | AAc | 15 | 18 | All | 0.000003 |
ORF1ab/nsp3 | 264 | A264N | GCC | AAT | 3 | 18 | All | 0.000001 |
ORF1ab/nsp3 | 264 | A264A | gcC | gcT | 17 | 18 | AY.25 | 0.000102 |
ORF1ab/nsp3 | 264 | A264A | gcC | gcA | 1 | 18 | AY.25 | 0.000006 |
ORF1ab/nsp3 | 264 | A264D | gCc | gAc | 18 | 18 | B.1.617.2 | 0.000068 |
ORF1ab/nsp3 | 264 | A264V | gCc | gTc | 17 | 17 | AY.44 | 0.000103 |
ORF1ab/nsp3 | 264 | A264V | gCc | gTc | 17 | 17 | AY.98 | 0.001343 |
ORF1ab/nsp3 | 264 | A264V | gCc | gTc | 17 | 17 | B.1 | 0.000156 |
ORF1ab/nsp3 | 264 | A264V | gCc | gTc | 17 | 17 | B.1.1.222 | 0.003468 |
ORF1ab/nsp3 | 264 | A264T | Gcc | Acc | 12 | 15 | B.1 | 0.00011 |
ORF1ab/nsp3 | 264 | A264T | GcC | AcG | 1 | 15 | B.1 | 0.000009 |
ORF1ab/nsp3 | 264 | A264T | GcC | AcA | 1 | 15 | B.1 | 0.000009 |
ORF1ab/nsp3 | 264 | A264T | GcC | AcT | 1 | 15 | B.1 | 0.000009 |
ORF1ab/nsp3 | 264 | A264V | gCc | gTc | 15 | 15 | B.1.369 | 0.004278 |
ORF1ab/nsp3 | 264 | A264A | gcC | gcT | 13 | 14 | B.1.1 | 0.000236 |
ORF1ab/nsp3 | 264 | A264A | gcC | gcG | 1 | 14 | B.1.1 | 0.000018 |
ORF1ab/nsp3 | 264 | A264A | gcC | gcT | 14 | 14 | P.1.14 | 0.000669 |
ORF1ab/nsp3 | 264 | A264A | gcC | gcT | 13 | 13 | B.1.177.7 | 0.002143 |
ORF1ab/nsp3 | 264 | A264V | gCc | gTc | 12 | 12 | AY.4.2 | 0.00026 |
ORF1ab/nsp3 | 264 | A264T | Gcc | Acc | 12 | 12 | AY.43 | 0.000053 |
ORF1ab/nsp3 | 264 | A264T | Gcc | Acc | 12 | 12 | B.1.637 | 0.000877 |
ORF1ab/nsp3 | 264 | A264E | gCC | gAA | 6 | 11 | All | 0.000001 |
ORF1ab/nsp3 | 264 | A264E | gCC | gAG | 5 | 11 | All | 0.000001 |
ORF1ab/nsp3 | 264 | A264V | gCc | gTc | 11 | 11 | AY.102 | 0.000292 |
ORF1ab/nsp3 | 264 | A264A | gcC | gcT | 11 | 11 | AY.119 | 0.000388 |
ORF1ab/nsp3 | 264 | A264D | gCc | gAc | 10 | 11 | B.1 | 0.000092 |
ORF1ab/nsp3 | 264 | A264D | gCC | gAT | 1 | 11 | B.1 | 0.000009 |
ORF1ab/nsp3 | 264 | A264V | gCc | gTc | 10 | 10 | AY.39 | 0.000247 |
ORF1ab/nsp3 | 264 | A264V | gCc | gTc | 10 | 10 | AY.43 | 0.000044 |
ORF1ab/nsp3 | 264 | A264T | Gcc | Acc | 9 | 10 | B.1.617.2 | 0.000034 |
ORF1ab/nsp3 | 264 | A264T | GcC | AcA | 1 | 10 | B.1.617.2 | 0.000004 |
ORF1ab/nsp3 | 264 | A264del1 | gcC | gc- | 7 | 9 | All | 0.000001 |
ORF1ab/nsp3 | 264 | A264K | GCC | AAG | 5 | 9 | All | 0.000001 |
ORF1ab/nsp3 | 264 | A264R | GCC | AGG | 4 | 9 | All | 0.000001 |
ORF1ab/nsp3 | 264 | A264K | GCC | AAA | 4 | 9 | All | 0.000001 |
ORF1ab/nsp3 | 264 | A264R | GCC | AGA | 3 | 9 | All | 0.000001 |
ORF1ab/nsp3 | 264 | A264del1 | gCc | g-c | 2 | 9 | All | 0 |
ORF1ab/nsp3 | 264 | A264R | GCC | CGA | 1 | 9 | All | 0 |
ORF1ab/nsp3 | 264 | A264R | GCc | CGc | 1 | 9 | All | 0 |
ORF1ab/nsp3 | 264 | A264N | GCc | AAc | 8 | 9 | B.1 | 0.000073 |
ORF1ab/nsp3 | 264 | A264N | GCC | AAT | 1 | 9 | B.1 | 0.000009 |
ORF1ab/nsp3 | 264 | A264V | gCc | gTc | 9 | 9 | B.1.2 | 0.000079 |
ORF1ab/nsp3 | 264 | A264A | gcC | gcT | 9 | 9 | B.1.596 | 0.000784 |
ORF1ab/nsp3 | 264 | A264A | gcC | gcT | 6 | 9 | P.1 | 0.000095 |
ORF1ab/nsp3 | 264 | A264A | gcC | gcG | 2 | 9 | P.1 | 0.000032 |
ORF1ab/nsp3 | 264 | A264A | gcC | gcA | 1 | 9 | P.1 | 0.000016 |
ORF1ab/nsp3 | 264 | A264G | gCc | gGc | 5 | 8 | B.1 | 0.000046 |
ORF1ab/nsp3 | 264 | A264G | gCC | gGT | 1 | 8 | B.1 | 0.000009 |
ORF1ab/nsp3 | 264 | A264G | gCC | gGG | 1 | 8 | B.1 | 0.000009 |
ORF1ab/nsp3 | 264 | A264G | gCC | gGA | 1 | 8 | B.1 | 0.000009 |
ORF1ab/nsp3 | 264 | A264T | Gcc | Acc | 6 | 8 | B.1.1 | 0.000109 |
ORF1ab/nsp3 | 264 | A264T | GcC | AcT | 1 | 8 | B.1.1 | 0.000018 |
ORF1ab/nsp3 | 264 | A264T | GcC | AcG | 1 | 8 | B.1.1 | 0.000018 |
ORF1ab/nsp3 | 264 | A264V | gCc | gTc | 7 | 7 | AY.103 | 0.000043 |
ORF1ab/nsp3 | 264 | A264A | gcC | gcT | 7 | 7 | AY.117 | 0.000592 |
ORF1ab/nsp3 | 264 | A264A | gcC | gcT | 7 | 7 | AY.118 | 0.000439 |
ORF1ab/nsp3 | 264 | A264A | gcC | gcT | 7 | 7 | AY.12 | 0.002212 |
ORF1ab/nsp3 | 264 | A264V | gCc | gTc | 7 | 7 | AY.30 | 0.00277 |
ORF1ab/nsp3 | 264 | A264D | gCc | gAc | 7 | 7 | AY.4 | 0.000011 |
ORF1ab/nsp3 | 264 | A264A | gcC | gcT | 5 | 7 | AY.45 | 0.000608 |
ORF1ab/nsp3 | 264 | A264A | gcC | gcA | 2 | 7 | AY.45 | 0.000243 |
ORF1ab/nsp3 | 264 | A264V | gCc | gTc | 7 | 7 | AY.63 | 0.002708 |
ORF1ab/nsp3 | 264 | A264V | gCc | gTc | 7 | 7 | AY.77 | 0.007892 |
ORF1ab/nsp3 | 264 | A264S | GCc | AGc | 4 | 7 | B.1 | 0.000037 |
ORF1ab/nsp3 | 264 | A264S | Gcc | Tcc | 2 | 7 | B.1 | 0.000018 |
ORF1ab/nsp3 | 264 | A264S | GCC | AGT | 1 | 7 | B.1 | 0.000009 |
ORF1ab/nsp3 | 264 | A264A | gcC | gcT | 6 | 6 | AY.100 | 0.000276 |
ORF1ab/nsp3 | 264 | A264T | Gcc | Acc | 6 | 6 | AY.117 | 0.000507 |
ORF1ab/nsp3 | 264 | A264T | Gcc | Acc | 6 | 6 | AY.4 | 0.000009 |
ORF1ab/nsp3 | 264 | A264T | Gcc | Acc | 6 | 6 | AY.44 | 0.000037 |
ORF1ab/nsp3 | 264 | A264del | GCC | --- | 6 | 6 | B.1 | 0.000055 |
ORF1ab/nsp3 | 264 | A264G | gCc | gGc | 4 | 6 | B.1.1 | 0.000073 |
ORF1ab/nsp3 | 264 | A264G | gCC | gGG | 1 | 6 | B.1.1 | 0.000018 |
ORF1ab/nsp3 | 264 | A264G | gCC | gGT | 1 | 6 | B.1.1 | 0.000018 |
ORF1ab/nsp3 | 264 | A264A | gcC | gcT | 6 | 6 | B.1.177 | 0.000079 |
ORF1ab/nsp3 | 264 | A264T | Gcc | Acc | 6 | 6 | B.1.221 | 0.000426 |
ORF1ab/nsp3 | 264 | A264A | gcC | gcT | 6 | 6 | B.1.243 | 0.000418 |
ORF1ab/nsp3 | 264 | A264A | gcC | gcT | 6 | 6 | B.1.429 | 0.000141 |
ORF1ab/nsp3 | 264 | A264A | gcC | gcT | 6 | 6 | B.1.628 | 0.002114 |
ORF1ab/nsp3 | 264 | A264V | gCc | gTc | 5 | 5 | A.23.1 | 0.003521 |
ORF1ab/nsp3 | 264 | A264A | gcC | gcT | 5 | 5 | AY.102 | 0.000133 |
ORF1ab/nsp3 | 264 | A264A | gcC | gcT | 5 | 5 | AY.14 | 0.00044 |
ORF1ab/nsp3 | 264 | A264V | gCc | gTc | 5 | 5 | AY.20 | 0.000194 |
ORF1ab/nsp3 | 264 | A264A | gcC | gcA | 3 | 5 | AY.4.2 | 0.000065 |
ORF1ab/nsp3 | 264 | A264A | gcC | gcT | 2 | 5 | AY.4.2 | 0.000043 |
ORF1ab/nsp3 | 264 | A264A | gcC | gcT | 5 | 5 | AY.75.1 | 0.000902 |
ORF1ab/nsp3 | 264 | A264D | gCc | gAc | 4 | 5 | B.1.1 | 0.000073 |
ORF1ab/nsp3 | 264 | A264S | GCc | AGc | 3 | 5 | B.1.1 | 0.000054 |
ORF1ab/nsp3 | 264 | A264S | GCC | AGT | 1 | 5 | B.1.1 | 0.000018 |
ORF1ab/nsp3 | 264 | A264S | Gcc | Tcc | 1 | 5 | B.1.1 | 0.000018 |
ORF1ab/nsp3 | 264 | A264D | gCC | gAT | 1 | 5 | B.1.1 | 0.000018 |
ORF1ab/nsp3 | 264 | A264V | gCc | gTc | 5 | 5 | B.1.1.302 | 0.010373 |
ORF1ab/nsp3 | 264 | A264del | GCC | --- | 5 | 5 | B.1.621 | 0.000443 |
ORF1ab/nsp3 | 264 | A264V | gCc | gTc | 5 | 5 | B.1.621 | 0.000443 |
ORF1ab/nsp3 | 264 | A264S | Gcc | Tcc | 4 | 4 | AY.102 | 0.000106 |
ORF1ab/nsp3 | 264 | A264D | gCc | gAc | 4 | 4 | AY.103 | 0.000025 |
ORF1ab/nsp3 | 264 | A264A | gcC | gcA | 2 | 4 | AY.29 | 0.000032 |
ORF1ab/nsp3 | 264 | A264A | gcC | gcT | 1 | 4 | AY.29 | 0.000016 |
ORF1ab/nsp3 | 264 | A264A | gcC | gcG | 1 | 4 | AY.29 | 0.000016 |
ORF1ab/nsp3 | 264 | A264D | gCc | gAc | 4 | 4 | AY.43 | 0.000018 |
ORF1ab/nsp3 | 264 | A264V | gCc | gTc | 4 | 4 | AY.47 | 0.000124 |
ORF1ab/nsp3 | 264 | A264V | gCc | gTc | 4 | 4 | AY.53 | 0.00115 |
ORF1ab/nsp3 | 264 | A264A | gcC | gcT | 4 | 4 | AY.99.2 | 0.000369 |
ORF1ab/nsp3 | 264 | A264R | GCC | CGA | 1 | 4 | B.1 | 0.000009 |
ORF1ab/nsp3 | 264 | A264R | GCC | AGA | 1 | 4 | B.1 | 0.000009 |
ORF1ab/nsp3 | 264 | A264R | GCc | CGc | 1 | 4 | B.1 | 0.000009 |
ORF1ab/nsp3 | 264 | A264R | GCC | AGG | 1 | 4 | B.1 | 0.000009 |
ORF1ab/nsp3 | 264 | A264N | GCc | AAc | 3 | 4 | B.1.1 | 0.000054 |
ORF1ab/nsp3 | 264 | A264N | GCC | AAT | 1 | 4 | B.1.1 | 0.000018 |
ORF1ab/nsp3 | 264 | A264T | Gcc | Acc | 2 | 4 | B.1.1.409 | 0.005666 |
ORF1ab/nsp3 | 264 | A264G | gCc | gGc | 2 | 4 | B.1.1.409 | 0.005666 |
ORF1ab/nsp3 | 264 | A264G | gCC | gGA | 1 | 4 | B.1.1.409 | 0.002833 |
ORF1ab/nsp3 | 264 | A264T | GcC | AcA | 1 | 4 | B.1.1.409 | 0.002833 |
ORF1ab/nsp3 | 264 | A264G | gCC | gGG | 1 | 4 | B.1.1.409 | 0.002833 |
ORF1ab/nsp3 | 264 | A264T | GcC | AcG | 1 | 4 | B.1.1.409 | 0.002833 |
ORF1ab/nsp3 | 264 | A264V | gCc | gTc | 4 | 4 | B.1.160 | 0.000125 |
ORF1ab/nsp3 | 264 | A264V | gCc | gTc | 4 | 4 | B.1.177 | 0.000053 |
ORF1ab/nsp3 | 264 | A264V | gCc | gTc | 4 | 4 | B.1.36 | 0.000584 |
ORF1ab/nsp3 | 264 | A264A | gcC | gcT | 4 | 4 | B.1.427 | 0.000202 |
ORF1ab/nsp3 | 264 | A264A | gcC | gcT | 4 | 4 | B.1.621 | 0.000354 |
ORF1ab/nsp3 | 264 | A264T | Gcc | Acc | 3 | 4 | P.1 | 0.000047 |
ORF1ab/nsp3 | 264 | A264T | GcC | AcA | 1 | 4 | P.1 | 0.000016 |
ORF1ab/nsp3 | 264 | A264del2 | gCC | g-- | 3 | 3 | All | 0.000001 |
ORF1ab/nsp3 | 264 | A264P | Gcc | Ccc | 2 | 3 | All | 0 |
ORF1ab/nsp3 | 264 | A264P | GcC | CcA | 1 | 3 | All | 0 |
ORF1ab/nsp3 | 264 | A264A | gcC | gcT | 3 | 3 | AY.120 | 0.000112 |
ORF1ab/nsp3 | 264 | A264A | gcC | gcT | 3 | 3 | AY.16 | 0.001139 |
ORF1ab/nsp3 | 264 | A264A | gcC | gcT | 3 | 3 | AY.26 | 0.000085 |
ORF1ab/nsp3 | 264 | A264D | gCc | gAc | 3 | 3 | AY.39 | 0.000074 |
ORF1ab/nsp3 | 264 | A264D | gCc | gAc | 3 | 3 | AY.44 | 0.000018 |
ORF1ab/nsp3 | 264 | A264V | gCc | gTc | 3 | 3 | AY.56 | 0.004815 |
ORF1ab/nsp3 | 264 | A264V | gCc | gTc | 3 | 3 | AY.92 | 0.000862 |
ORF1ab/nsp3 | 264 | A264K | GCC | AAG | 2 | 3 | B.1 | 0.000018 |
ORF1ab/nsp3 | 264 | A264K | GCC | AAA | 1 | 3 | B.1 | 0.000009 |
ORF1ab/nsp3 | 264 | A264V | gCc | gTc | 3 | 3 | B.1.1 | 0.000054 |
ORF1ab/nsp3 | 264 | A264del | GCC | --- | 3 | 3 | B.1.1 | 0.000054 |
ORF1ab/nsp3 | 264 | A264V | gCc | gTc | 3 | 3 | B.1.1.33 | 0.001263 |
ORF1ab/nsp3 | 264 | A264V | gCc | gTc | 3 | 3 | B.1.1.519 | 0.000119 |
ORF1ab/nsp3 | 264 | A264A | gcC | gcT | 3 | 3 | B.1.351 | 0.000089 |
ORF1ab/nsp3 | 264 | A264A | gcC | gcT | 3 | 3 | B.1.409 | 0.002344 |
ORF1ab/nsp3 | 264 | A264T | Gcc | Acc | 3 | 3 | B.1.416 | 0.003807 |
ORF1ab/nsp3 | 264 | A264A | gcC | gcT | 3 | 3 | B.1.525 | 0.000339 |
ORF1ab/nsp3 | 264 | A264A | gcC | gcT | 3 | 3 | B.1.526 | 0.000071 |
ORF1ab/nsp3 | 264 | A264A | gcC | gcT | 3 | 3 | B.1.617.1 | 0.000387 |
ORF1ab/nsp3 | 264 | A264del | GCC | --- | 3 | 3 | B.1.617.2 | 0.000011 |
ORF1ab/nsp3 | 264 | A264V | gCc | gTc | 3 | 3 | C.37 | 0.000348 |
ORF1ab/nsp3 | 264 | A264S | Gcc | Tcc | 3 | 3 | D.2 | 0.000225 |
ORF1ab/nsp3 | 264 | A264D | gCc | gAc | 3 | 3 | P.1 | 0.000047 |
ORF1ab/nsp3 | 264 | A264E | gCC | gAG | 2 | 3 | P.1 | 0.000032 |
ORF1ab/nsp3 | 264 | A264E | gCC | gAA | 1 | 3 | P.1 | 0.000016 |
ORF1ab/nsp3 | 264 | A264del | GCC | --- | 3 | 3 | P.1.15 | 0.000697 |
ORF1ab/nsp3 | 264 | A264A | gcC | gcA | 3 | 3 | Q.8 | 0.000495 |
ORF1ab/nsp3 | 264 | A264C | GCc | TGc | 2 | 2 | All | 0 |
ORF1ab/nsp3 | 264 | A264D | gCc | gAc | 2 | 2 | AY.100 | 0.000092 |
ORF1ab/nsp3 | 264 | A264A | gcC | gcT | 2 | 2 | AY.114 | 0.000462 |
ORF1ab/nsp3 | 264 | A264D | gCc | gAc | 2 | 2 | AY.118 | 0.000125 |
ORF1ab/nsp3 | 264 | A264T | Gcc | Acc | 2 | 2 | AY.118 | 0.000125 |
ORF1ab/nsp3 | 264 | A264V | gCc | gTc | 2 | 2 | AY.119 | 0.000071 |
ORF1ab/nsp3 | 264 | A264V | gCc | gTc | 2 | 2 | AY.2 | 0.000712 |
ORF1ab/nsp3 | 264 | A264A | gcC | gcT | 2 | 2 | AY.20 | 0.000078 |
ORF1ab/nsp3 | 264 | A264T | Gcc | Acc | 2 | 2 | AY.23 | 0.000139 |
ORF1ab/nsp3 | 264 | A264D | gCc | gAc | 2 | 2 | AY.3 | 0.00002 |
ORF1ab/nsp3 | 264 | A264T | Gcc | Acc | 2 | 2 | AY.32 | 0.001065 |
ORF1ab/nsp3 | 264 | A264T | Gcc | Acc | 2 | 2 | AY.45 | 0.000243 |
ORF1ab/nsp3 | 264 | A264A | gcC | gcT | 2 | 2 | AY.46.4 | 0.000329 |
ORF1ab/nsp3 | 264 | A264T | Gcc | Acc | 2 | 2 | AY.5 | 0.000041 |
ORF1ab/nsp3 | 264 | A264V | gCc | gTc | 2 | 2 | AY.5 | 0.000041 |
ORF1ab/nsp3 | 264 | A264A | gcC | gcT | 2 | 2 | AY.53 | 0.000575 |
ORF1ab/nsp3 | 264 | A264A | gcC | gcT | 2 | 2 | AY.6 | 0.000082 |
ORF1ab/nsp3 | 264 | A264V | gCc | gTc | 2 | 2 | AY.61 | 0.00021 |
ORF1ab/nsp3 | 264 | A264A | gcC | gcT | 2 | 2 | AY.80 | 0.002257 |
ORF1ab/nsp3 | 264 | A264del | GCC | --- | 2 | 2 | AY.9 | 0.000135 |
ORF1ab/nsp3 | 264 | A264V | gCc | gTc | 2 | 2 | AY.9.2 | 0.000073 |
ORF1ab/nsp3 | 264 | A264T | Gcc | Acc | 2 | 2 | AY.98.1 | 0.000097 |
ORF1ab/nsp3 | 264 | A264V | gCc | gTc | 2 | 2 | AY.98.1 | 0.000097 |
ORF1ab/nsp3 | 264 | A264del | GCC | --- | 2 | 2 | AZ.2 | 0.001642 |
ORF1ab/nsp3 | 264 | A264P | Gcc | Ccc | 1 | 2 | B.1 | 0.000009 |
ORF1ab/nsp3 | 264 | A264E | gCC | gAG | 1 | 2 | B.1 | 0.000009 |
ORF1ab/nsp3 | 264 | A264P | GcC | CcA | 1 | 2 | B.1 | 0.000009 |
ORF1ab/nsp3 | 264 | A264E | gCC | gAA | 1 | 2 | B.1 | 0.000009 |
ORF1ab/nsp3 | 264 | A264A | gcC | gcT | 2 | 2 | B.1.1.1 | 0.000653 |
ORF1ab/nsp3 | 264 | A264S | GCc | AGc | 2 | 2 | B.1.1.409 | 0.005666 |
ORF1ab/nsp3 | 264 | A264A | gcC | gcA | 1 | 2 | B.1.1.409 | 0.002833 |
ORF1ab/nsp3 | 264 | A264A | gcC | gcG | 1 | 2 | B.1.1.409 | 0.002833 |
ORF1ab/nsp3 | 264 | A264E | gCC | gAG | 1 | 2 | B.1.1.409 | 0.002833 |
ORF1ab/nsp3 | 264 | A264R | GCC | AGG | 1 | 2 | B.1.1.409 | 0.002833 |
ORF1ab/nsp3 | 264 | A264E | gCC | gAA | 1 | 2 | B.1.1.409 | 0.002833 |
ORF1ab/nsp3 | 264 | A264K | GCC | AAG | 1 | 2 | B.1.1.409 | 0.002833 |
ORF1ab/nsp3 | 264 | A264R | GCC | AGA | 1 | 2 | B.1.1.409 | 0.002833 |
ORF1ab/nsp3 | 264 | A264K | GCC | AAA | 1 | 2 | B.1.1.409 | 0.002833 |
ORF1ab/nsp3 | 264 | A264T | Gcc | Acc | 1 | 2 | B.1.139 | 0.000733 |
ORF1ab/nsp3 | 264 | A264G | gCC | gGA | 1 | 2 | B.1.139 | 0.000733 |
ORF1ab/nsp3 | 264 | A264T | GcC | AcA | 1 | 2 | B.1.139 | 0.000733 |
ORF1ab/nsp3 | 264 | A264G | gCc | gGc | 1 | 2 | B.1.139 | 0.000733 |
ORF1ab/nsp3 | 264 | A264T | Gcc | Acc | 2 | 2 | B.1.177 | 0.000026 |
ORF1ab/nsp3 | 264 | A264V | gCc | gTc | 2 | 2 | B.1.177.86 | 0.000367 |
ORF1ab/nsp3 | 264 | A264S | Gcc | Tcc | 2 | 2 | B.1.2 | 0.000018 |
ORF1ab/nsp3 | 264 | A264T | Gcc | Acc | 2 | 2 | B.1.258.17 | 0.000208 |
ORF1ab/nsp3 | 264 | A264V | gCc | gTc | 2 | 2 | B.1.258.17 | 0.000208 |
ORF1ab/nsp3 | 264 | A264A | gcC | gcT | 2 | 2 | B.1.36 | 0.000292 |
ORF1ab/nsp3 | 264 | A264A | gcC | gcT | 2 | 2 | B.1.415.1 | 0.015152 |
ORF1ab/nsp3 | 264 | A264D | gCc | gAc | 2 | 2 | B.1.561 | 0.000794 |
ORF1ab/nsp3 | 264 | A264G | gCc | gGc | 1 | 2 | B.1.627 | 0.00202 |
ORF1ab/nsp3 | 264 | A264S | GCC | AGT | 1 | 2 | B.1.627 | 0.00202 |
ORF1ab/nsp3 | 264 | A264G | gCC | gGT | 1 | 2 | B.1.627 | 0.00202 |
ORF1ab/nsp3 | 264 | A264S | GCc | AGc | 1 | 2 | B.1.627 | 0.00202 |
ORF1ab/nsp3 | 264 | A264T | GcC | AcT | 1 | 2 | B.1.627 | 0.00202 |
ORF1ab/nsp3 | 264 | A264T | Gcc | Acc | 1 | 2 | B.1.627 | 0.00202 |
ORF1ab/nsp3 | 264 | A264del | GCC | --- | 2 | 2 | C.37 | 0.000232 |
ORF1ab/nsp3 | 264 | A264A | gcC | gcT | 2 | 2 | D.2 | 0.00015 |
ORF1ab/nsp3 | 264 | A264A | gcC | gcT | 2 | 2 | N.3 | 0.011628 |
ORF1ab/nsp3 | 264 | A264del | GCC | --- | 2 | 2 | N.6 | 0.014184 |
ORF1ab/nsp3 | 264 | A264V | gCc | gTc | 2 | 2 | P.1 | 0.000032 |
ORF1ab/nsp3 | 264 | A264del | GCC | --- | 2 | 2 | P.1 | 0.000032 |
ORF1ab/nsp3 | 264 | A264N | GCc | AAc | 2 | 2 | P.1 | 0.000032 |
ORF1ab/nsp3 | 264 | A264G | gCc | gGc | 1 | 2 | P.1 | 0.000016 |
ORF1ab/nsp3 | 264 | A264K | GCC | AAA | 1 | 2 | P.1 | 0.000016 |
ORF1ab/nsp3 | 264 | A264K | GCC | AAG | 1 | 2 | P.1 | 0.000016 |
ORF1ab/nsp3 | 264 | A264G | gCC | gGG | 1 | 2 | P.1 | 0.000016 |
ORF1ab/nsp3 | 264 | A264del1 | gcC | gc- | 2 | 2 | P.1.15 | 0.000465 |
ORF1ab/nsp3 | 264 | A264A | gcC | gcT | 2 | 2 | R.1 | 0.00018 |
ORF1ab/nsp3 | 264 | A264D | gCc | gAc | 2 | 2 | R.1 | 0.00018 |
ORF1ab/nsp3 | 264 | A264Q | GCC | CAA | 1 | 1 | All | 0 |
ORF1ab/nsp3 | 264 | A264Y | GCC | TAT | 1 | 1 | All | 0 |
ORF1ab/nsp3 | 264 | A264X | GCC | TAA | 1 | 1 | All | 0 |
ORF1ab/nsp3 | 264 | A264H | GCc | CAc | 1 | 1 | All | 0 |
ORF1ab/nsp3 | 264 | A264del2 | gCC | g-- | 1 | 1 | AY.100 | 0.000046 |
ORF1ab/nsp3 | 264 | A264del | GCC | --- | 1 | 1 | AY.100 | 0.000046 |
ORF1ab/nsp3 | 264 | A264del | GCC | --- | 1 | 1 | AY.103 | 0.000006 |
ORF1ab/nsp3 | 264 | A264G | gCc | gGc | 1 | 1 | AY.103 | 0.000006 |
ORF1ab/nsp3 | 264 | A264S | Gcc | Tcc | 1 | 1 | AY.103 | 0.000006 |
ORF1ab/nsp3 | 264 | A264A | gcC | gcT | 1 | 1 | AY.104 | 0.001984 |
ORF1ab/nsp3 | 264 | A264V | gCc | gTc | 1 | 1 | AY.107 | 0.000466 |
ORF1ab/nsp3 | 264 | A264V | gCc | gTc | 1 | 1 | AY.108 | 0.001103 |
ORF1ab/nsp3 | 264 | A264del | GCC | --- | 1 | 1 | AY.11 | 0.001339 |
ORF1ab/nsp3 | 264 | A264D | gCc | gAc | 1 | 1 | AY.111 | 0.000183 |
ORF1ab/nsp3 | 264 | A264T | Gcc | Acc | 1 | 1 | AY.111 | 0.000183 |
ORF1ab/nsp3 | 264 | A264V | gCc | gTc | 1 | 1 | AY.117 | 0.000085 |
ORF1ab/nsp3 | 264 | A264V | gCc | gTc | 1 | 1 | AY.118 | 0.000063 |
ORF1ab/nsp3 | 264 | A264T | Gcc | Acc | 1 | 1 | AY.12 | 0.000316 |
ORF1ab/nsp3 | 264 | A264V | gCc | gTc | 1 | 1 | AY.120 | 0.000037 |
ORF1ab/nsp3 | 264 | A264A | gcC | gcA | 1 | 1 | AY.120.1 | 0.000321 |
ORF1ab/nsp3 | 264 | A264A | gcC | gcT | 1 | 1 | AY.13 | 0.000161 |
ORF1ab/nsp3 | 264 | A264V | gCc | gTc | 1 | 1 | AY.14 | 0.000088 |
ORF1ab/nsp3 | 264 | A264del | GCC | --- | 1 | 1 | AY.20 | 0.000039 |
ORF1ab/nsp3 | 264 | A264V | gCc | gTc | 1 | 1 | AY.23 | 0.00007 |
ORF1ab/nsp3 | 264 | A264S | Gcc | Tcc | 1 | 1 | AY.23 | 0.00007 |
ORF1ab/nsp3 | 264 | A264del | GCC | --- | 1 | 1 | AY.24 | 0.000431 |
ORF1ab/nsp3 | 264 | A264del | GCC | --- | 1 | 1 | AY.25 | 0.000006 |
ORF1ab/nsp3 | 264 | A264S | Gcc | Tcc | 1 | 1 | AY.25 | 0.000006 |
ORF1ab/nsp3 | 264 | A264D | gCc | gAc | 1 | 1 | AY.25 | 0.000006 |
ORF1ab/nsp3 | 264 | A264T | Gcc | Acc | 1 | 1 | AY.25 | 0.000006 |
ORF1ab/nsp3 | 264 | A264del2 | gCC | g-- | 1 | 1 | AY.25 | 0.000006 |
ORF1ab/nsp3 | 264 | A264V | gCc | gTc | 1 | 1 | AY.27 | 0.000065 |
ORF1ab/nsp3 | 264 | A264E | gCC | gAA | 1 | 1 | AY.3 | 0.00001 |
ORF1ab/nsp3 | 264 | A264D | gCc | gAc | 1 | 1 | AY.32 | 0.000532 |
ORF1ab/nsp3 | 264 | A264V | gCc | gTc | 1 | 1 | AY.33 | 0.000067 |
ORF1ab/nsp3 | 264 | A264A | gcC | gcT | 1 | 1 | AY.33 | 0.000067 |
ORF1ab/nsp3 | 264 | A264S | Gcc | Tcc | 1 | 1 | AY.34 | 0.000097 |
ORF1ab/nsp3 | 264 | A264A | gcC | gcT | 1 | 1 | AY.34 | 0.000097 |
ORF1ab/nsp3 | 264 | A264del | GCC | --- | 1 | 1 | AY.34.1 | 0.00051 |
ORF1ab/nsp3 | 264 | A264D | gCc | gAc | 1 | 1 | AY.36 | 0.000148 |
ORF1ab/nsp3 | 264 | A264V | gCc | gTc | 1 | 1 | AY.36 | 0.000148 |
ORF1ab/nsp3 | 264 | A264A | gcC | gcT | 1 | 1 | AY.38 | 0.000499 |
ORF1ab/nsp3 | 264 | A264D | gCc | gAc | 1 | 1 | AY.38 | 0.000499 |
ORF1ab/nsp3 | 264 | A264T | Gcc | Acc | 1 | 1 | AY.39 | 0.000025 |
ORF1ab/nsp3 | 264 | A264A | gcC | gcT | 1 | 1 | AY.39 | 0.000025 |
ORF1ab/nsp3 | 264 | A264V | gCc | gTc | 1 | 1 | AY.39.1 | 0.00004 |
ORF1ab/nsp3 | 264 | A264S | Gcc | Tcc | 1 | 1 | AY.4.2 | 0.000022 |
ORF1ab/nsp3 | 264 | A264A | gcC | gcT | 1 | 1 | AY.4.5 | 0.000107 |
ORF1ab/nsp3 | 264 | A264D | gCc | gAc | 1 | 1 | AY.42 | 0.00004 |
ORF1ab/nsp3 | 264 | A264V | gCc | gTc | 1 | 1 | AY.42 | 0.00004 |
ORF1ab/nsp3 | 264 | A264S | Gcc | Tcc | 1 | 1 | AY.43 | 0.000004 |
ORF1ab/nsp3 | 264 | A264S | Gcc | Tcc | 1 | 1 | AY.44 | 0.000006 |
ORF1ab/nsp3 | 264 | A264del | GCC | --- | 1 | 1 | AY.45 | 0.000122 |
ORF1ab/nsp3 | 264 | A264S | Gcc | Tcc | 1 | 1 | AY.46 | 0.000104 |
ORF1ab/nsp3 | 264 | A264A | gcC | gcT | 1 | 1 | AY.46 | 0.000104 |
ORF1ab/nsp3 | 264 | A264D | gCc | gAc | 1 | 1 | AY.46 | 0.000104 |
ORF1ab/nsp3 | 264 | A264A | gcC | gcT | 1 | 1 | AY.47 | 0.000031 |
ORF1ab/nsp3 | 264 | A264T | Gcc | Acc | 1 | 1 | AY.47 | 0.000031 |
ORF1ab/nsp3 | 264 | A264A | gcC | gcT | 1 | 1 | AY.54 | 0.000095 |
ORF1ab/nsp3 | 264 | A264A | gcC | gcT | 1 | 1 | AY.59 | 0.00053 |
ORF1ab/nsp3 | 264 | A264V | gCc | gTc | 1 | 1 | AY.6 | 0.000041 |
ORF1ab/nsp3 | 264 | A264A | gcC | gcG | 1 | 1 | AY.61 | 0.000105 |
ORF1ab/nsp3 | 264 | A264V | gCc | gTc | 1 | 1 | AY.67 | 0.000464 |
ORF1ab/nsp3 | 264 | A264del1 | gcC | gc- | 1 | 1 | AY.68 | 0.000274 |
ORF1ab/nsp3 | 264 | A264S | Gcc | Tcc | 1 | 1 | AY.7.1 | 0.000113 |
ORF1ab/nsp3 | 264 | A264V | gCc | gTc | 1 | 1 | AY.75.1 | 0.00018 |
ORF1ab/nsp3 | 264 | A264T | Gcc | Acc | 1 | 1 | AY.8 | 0.000606 |
ORF1ab/nsp3 | 264 | A264V | gCc | gTc | 1 | 1 | AY.82 | 0.001357 |
ORF1ab/nsp3 | 264 | A264D | gCc | gAc | 1 | 1 | AY.84 | 0.000437 |
ORF1ab/nsp3 | 264 | A264T | Gcc | Acc | 1 | 1 | AY.84 | 0.000437 |
ORF1ab/nsp3 | 264 | A264A | gcC | gcA | 1 | 1 | AY.85 | 0.000427 |
ORF1ab/nsp3 | 264 | A264A | gcC | gcT | 1 | 1 | AY.9 | 0.000068 |
ORF1ab/nsp3 | 264 | A264V | gCc | gTc | 1 | 1 | AY.9 | 0.000068 |
ORF1ab/nsp3 | 264 | A264D | gCc | gAc | 1 | 1 | AY.9.2 | 0.000037 |
ORF1ab/nsp3 | 264 | A264A | gcC | gcT | 1 | 1 | AY.92 | 0.000287 |
ORF1ab/nsp3 | 264 | A264A | gcC | gcT | 1 | 1 | AY.97 | 0.001701 |
ORF1ab/nsp3 | 264 | A264A | gcC | gcT | 1 | 1 | AY.98.1 | 0.000048 |
ORF1ab/nsp3 | 264 | A264S | Gcc | Tcc | 1 | 1 | AY.98.1 | 0.000048 |
ORF1ab/nsp3 | 264 | A264A | gcC | gcT | 1 | 1 | AY.99 | 0.001049 |
ORF1ab/nsp3 | 264 | A264T | Gcc | Acc | 1 | 1 | AY.99.2 | 0.000092 |
ORF1ab/nsp3 | 264 | A264A | gcC | gcT | 1 | 1 | AZ.6 | 0.008403 |
ORF1ab/nsp3 | 264 | A264del1 | gCc | g-c | 1 | 1 | B | 0.000128 |
ORF1ab/nsp3 | 264 | A264del1 | gcC | gc- | 1 | 1 | B.1 | 0.000009 |
ORF1ab/nsp3 | 264 | A264C | GCc | TGc | 1 | 1 | B.1 | 0.000009 |
ORF1ab/nsp3 | 264 | A264Q | GCC | CAA | 1 | 1 | B.1 | 0.000009 |
ORF1ab/nsp3 | 264 | A264H | GCc | CAc | 1 | 1 | B.1 | 0.000009 |
ORF1ab/nsp3 | 264 | A264E | gCC | gAG | 1 | 1 | B.1.1 | 0.000018 |
ORF1ab/nsp3 | 264 | A264C | GCc | TGc | 1 | 1 | B.1.1 | 0.000018 |
ORF1ab/nsp3 | 264 | A264del1 | gcC | gc- | 1 | 1 | B.1.1 | 0.000018 |
ORF1ab/nsp3 | 264 | A264R | GCC | AGG | 1 | 1 | B.1.1 | 0.000018 |
ORF1ab/nsp3 | 264 | A264K | GCC | AAG | 1 | 1 | B.1.1 | 0.000018 |
ORF1ab/nsp3 | 264 | A264V | gCc | gTc | 1 | 1 | B.1.1.1 | 0.000327 |
ORF1ab/nsp3 | 264 | A264V | gCc | gTc | 1 | 1 | B.1.1.161 | 0.003534 |
ORF1ab/nsp3 | 264 | A264A | gcC | gcT | 1 | 1 | B.1.1.221 | 0.010101 |
ORF1ab/nsp3 | 264 | A264A | gcC | gcT | 1 | 1 | B.1.1.222 | 0.000204 |
ORF1ab/nsp3 | 264 | A264A | gcC | gcT | 1 | 1 | B.1.1.229 | 0.005747 |
ORF1ab/nsp3 | 264 | A264T | Gcc | Acc | 1 | 1 | B.1.1.25 | 0.000569 |
ORF1ab/nsp3 | 264 | A264A | gcC | gcT | 1 | 1 | B.1.1.285 | 0.006536 |
ORF1ab/nsp3 | 264 | A264A | gcC | gcT | 1 | 1 | B.1.1.294 | 0.001266 |
ORF1ab/nsp3 | 264 | A264V | gCc | gTc | 1 | 1 | B.1.1.318 | 0.000302 |
ORF1ab/nsp3 | 264 | A264del | GCC | --- | 1 | 1 | B.1.1.33 | 0.000421 |
ORF1ab/nsp3 | 264 | A264A | gcC | gcA | 1 | 1 | B.1.1.335 | 0.012987 |
ORF1ab/nsp3 | 264 | A264del | GCC | --- | 1 | 1 | B.1.1.348 | 0.000796 |
ORF1ab/nsp3 | 264 | A264D | gCc | gAc | 1 | 1 | B.1.1.381 | 0.04 |
ORF1ab/nsp3 | 264 | A264N | GCc | AAc | 1 | 1 | B.1.1.409 | 0.002833 |
ORF1ab/nsp3 | 264 | A264D | gCc | gAc | 1 | 1 | B.1.1.409 | 0.002833 |
ORF1ab/nsp3 | 264 | A264V | gCc | gTc | 1 | 1 | B.1.1.434 | 0.000349 |
ORF1ab/nsp3 | 264 | A264V | gCc | gTc | 1 | 1 | B.1.1.464 | 0.001473 |
ORF1ab/nsp3 | 264 | A264V | gCc | gTc | 1 | 1 | B.1.1.51 | 0.001718 |
ORF1ab/nsp3 | 264 | A264A | gcC | gcT | 1 | 1 | B.1.1.524 | 0.020833 |
ORF1ab/nsp3 | 264 | A264S | Gcc | Tcc | 1 | 1 | B.1.1.7 | 0.000001 |
ORF1ab/nsp3 | 264 | A264D | gCc | gAc | 1 | 1 | B.1.139 | 0.000733 |
ORF1ab/nsp3 | 264 | A264S | GCc | AGc | 1 | 1 | B.1.139 | 0.000733 |
ORF1ab/nsp3 | 264 | A264K | GCC | AAA | 1 | 1 | B.1.139 | 0.000733 |
ORF1ab/nsp3 | 264 | A264R | GCC | AGA | 1 | 1 | B.1.139 | 0.000733 |
ORF1ab/nsp3 | 264 | A264N | GCc | AAc | 1 | 1 | B.1.139 | 0.000733 |
ORF1ab/nsp3 | 264 | A264E | gCC | gAA | 1 | 1 | B.1.139 | 0.000733 |
ORF1ab/nsp3 | 264 | A264A | gcC | gcA | 1 | 1 | B.1.139 | 0.000733 |
ORF1ab/nsp3 | 264 | A264A | gcC | gcT | 1 | 1 | B.1.147 | 0.000756 |
ORF1ab/nsp3 | 264 | A264A | gcC | gcT | 1 | 1 | B.1.160 | 0.000031 |
ORF1ab/nsp3 | 264 | A264V | gCc | gTc | 1 | 1 | B.1.177.15 | 0.000631 |
ORF1ab/nsp3 | 264 | A264V | gCc | gTc | 1 | 1 | B.1.177.18 | 0.00116 |
ORF1ab/nsp3 | 264 | A264V | gCc | gTc | 1 | 1 | B.1.177.33 | 0.001645 |
ORF1ab/nsp3 | 264 | A264A | gcC | gcT | 1 | 1 | B.1.177.73 | 0.000566 |
ORF1ab/nsp3 | 264 | A264T | Gcc | Acc | 1 | 1 | B.1.177.73 | 0.000566 |
ORF1ab/nsp3 | 264 | A264A | gcC | gcT | 1 | 1 | B.1.177.81 | 0.000189 |
ORF1ab/nsp3 | 264 | A264T | Gcc | Acc | 1 | 1 | B.1.2 | 0.000009 |
ORF1ab/nsp3 | 264 | A264S | GCc | AGc | 1 | 1 | B.1.221 | 0.000071 |
ORF1ab/nsp3 | 264 | A264G | gCc | gGc | 1 | 1 | B.1.221 | 0.000071 |
ORF1ab/nsp3 | 264 | A264V | gCc | gTc | 1 | 1 | B.1.221 | 0.000071 |
ORF1ab/nsp3 | 264 | A264S | Gcc | Tcc | 1 | 1 | B.1.23 | 0.006061 |
ORF1ab/nsp3 | 264 | A264A | gcC | gcT | 1 | 1 | B.1.234 | 0.000132 |
ORF1ab/nsp3 | 264 | A264A | gcC | gcT | 1 | 1 | B.1.240 | 0.000216 |
ORF1ab/nsp3 | 264 | A264V | gCc | gTc | 1 | 1 | B.1.241 | 0.000812 |
ORF1ab/nsp3 | 264 | A264S | Gcc | Tcc | 1 | 1 | B.1.243 | 0.00007 |
ORF1ab/nsp3 | 264 | A264A | gcC | gcT | 1 | 1 | B.1.258 | 0.000067 |
ORF1ab/nsp3 | 264 | A264V | gCc | gTc | 1 | 1 | B.1.258.11 | 0.000396 |
ORF1ab/nsp3 | 264 | A264V | gCc | gTc | 1 | 1 | B.1.258.3 | 0.001675 |
ORF1ab/nsp3 | 264 | A264A | gcC | gcT | 1 | 1 | B.1.298 | 0.002114 |
ORF1ab/nsp3 | 264 | A264D | gCc | gAc | 1 | 1 | B.1.36 | 0.000146 |
ORF1ab/nsp3 | 264 | A264V | gCc | gTc | 1 | 1 | B.1.36.17 | 0.000494 |
ORF1ab/nsp3 | 264 | A264A | gcC | gcT | 1 | 1 | B.1.36.25 | 0.002208 |
ORF1ab/nsp3 | 264 | A264V | gCc | gTc | 1 | 1 | B.1.36.29 | 0.000517 |
ORF1ab/nsp3 | 264 | A264A | gcC | gcT | 1 | 1 | B.1.36.38 | 0.001642 |
ORF1ab/nsp3 | 264 | A264V | gCc | gTc | 1 | 1 | B.1.367 | 0.000792 |
ORF1ab/nsp3 | 264 | A264S | Gcc | Tcc | 1 | 1 | B.1.369 | 0.000285 |
ORF1ab/nsp3 | 264 | A264D | gCC | gAT | 1 | 1 | B.1.375 | 0.00082 |
ORF1ab/nsp3 | 264 | A264E | gCC | gAA | 1 | 1 | B.1.375 | 0.00082 |
ORF1ab/nsp3 | 264 | A264Y | GCC | TAT | 1 | 1 | B.1.375 | 0.00082 |
ORF1ab/nsp3 | 264 | A264X | GCC | TAA | 1 | 1 | B.1.375 | 0.00082 |
ORF1ab/nsp3 | 264 | A264V | gCc | gTc | 1 | 1 | B.1.420 | 0.010417 |
ORF1ab/nsp3 | 264 | A264V | gCc | gTc | 1 | 1 | B.1.427 | 0.00005 |
ORF1ab/nsp3 | 264 | A264del | GCC | --- | 1 | 1 | B.1.429 | 0.000024 |
ORF1ab/nsp3 | 264 | A264A | gcC | gcT | 1 | 1 | B.1.456 | 0.003268 |
ORF1ab/nsp3 | 264 | A264T | Gcc | Acc | 1 | 1 | B.1.503 | 0.002488 |
ORF1ab/nsp3 | 264 | A264V | gCc | gTc | 1 | 1 | B.1.525 | 0.000113 |
ORF1ab/nsp3 | 264 | A264D | gCc | gAc | 1 | 1 | B.1.526 | 0.000024 |
ORF1ab/nsp3 | 264 | A264V | gCc | gTc | 1 | 1 | B.1.576 | 0.000907 |
ORF1ab/nsp3 | 264 | A264N | GCC | AAT | 1 | 1 | B.1.577 | 0.000687 |
ORF1ab/nsp3 | 264 | A264V | gCc | gTc | 1 | 1 | B.1.582 | 0.000491 |
ORF1ab/nsp3 | 264 | A264V | gCc | gTc | 1 | 1 | B.1.595 | 0.000261 |
ORF1ab/nsp3 | 264 | A264del1 | gCc | g-c | 1 | 1 | B.1.609 | 0.000479 |
ORF1ab/nsp3 | 264 | A264V | gCc | gTc | 1 | 1 | B.1.610 | 0.003546 |
ORF1ab/nsp3 | 264 | A264P | Gcc | Ccc | 1 | 1 | B.1.617.2 | 0.000004 |
ORF1ab/nsp3 | 264 | A264del1 | gcC | gc- | 1 | 1 | B.1.621 | 0.000089 |
ORF1ab/nsp3 | 264 | A264A | gcC | gcT | 1 | 1 | B.1.621.1 | 0.000506 |
ORF1ab/nsp3 | 264 | A264A | gcC | gcT | 1 | 1 | B.1.623 | 0.000536 |
ORF1ab/nsp3 | 264 | A264A | gcC | gcT | 1 | 1 | B.1.627 | 0.00202 |
ORF1ab/nsp3 | 264 | A264A | gcC | gcT | 1 | 1 | B.3 | 0.000831 |
ORF1ab/nsp3 | 264 | A264A | gcC | gcT | 1 | 1 | B.40 | 0.000364 |
ORF1ab/nsp3 | 264 | A264D | gCc | gAc | 1 | 1 | B.6.4 | 0.045455 |
ORF1ab/nsp3 | 264 | A264S | Gcc | Tcc | 1 | 1 | B.6.6 | 0.000889 |
ORF1ab/nsp3 | 264 | A264A | gcC | gcT | 1 | 1 | B.61 | 0.005747 |
ORF1ab/nsp3 | 264 | A264A | gcC | gcT | 1 | 1 | C.36.3 | 0.000567 |
ORF1ab/nsp3 | 264 | A264del1 | gcC | gc- | 1 | 1 | C.37 | 0.000116 |
ORF1ab/nsp3 | 264 | A264S | Gcc | Tcc | 1 | 1 | C.37 | 0.000116 |
ORF1ab/nsp3 | 264 | A264D | gCc | gAc | 1 | 1 | D.2 | 0.000075 |
ORF1ab/nsp3 | 264 | A264T | Gcc | Acc | 1 | 1 | D.2 | 0.000075 |
ORF1ab/nsp3 | 264 | A264T | Gcc | Acc | 1 | 1 | N.5 | 0.001767 |
ORF1ab/nsp3 | 264 | A264del2 | gCC | g-- | 1 | 1 | P.1 | 0.000016 |
ORF1ab/nsp3 | 264 | A264S | GCc | AGc | 1 | 1 | P.1 | 0.000016 |
ORF1ab/nsp3 | 264 | A264R | GCC | AGG | 1 | 1 | P.1 | 0.000016 |
ORF1ab/nsp3 | 264 | A264del | GCC | --- | 1 | 1 | P.1.1 | 0.000318 |
ORF1ab/nsp3 | 264 | A264V | gCc | gTc | 1 | 1 | P.1.15 | 0.000232 |
ORF1ab/nsp3 | 264 | A264A | gcC | gcA | 1 | 1 | P.1.16 | 0.000374 |
ORF1ab/nsp3 | 264 | A264T | Gcc | Acc | 1 | 1 | P.1.17 | 0.000162 |
ORF1ab/nsp3 | 264 | A264A | gcC | gcT | 1 | 1 | P.1.6 | 0.001946 |
ORF1ab/nsp3 | 264 | A264T | Gcc | Acc | 1 | 1 | P.1.7 | 0.000319 |
ORF1ab/nsp3 | 264 | A264V | gCc | gTc | 1 | 1 | P.2 | 0.000187 |
ORF1ab/nsp3 | 264 | A264V | gCc | gTc | 1 | 1 | Q.4 | 0.000455 |
ORF1ab/nsp3 | 264 | A264T | Gcc | Acc | 1 | 1 | Q.8 | 0.000165 |
ORF1ab/nsp3 | 264 | A264V | gCc | gTc | 1 | 1 | Q.8 | 0.000165 |
ORF1ab/nsp3 | 264 | A264A | gcC | gcT | 1 | 1 | W.3 | 0.005263 |
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CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk
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