CoV-GLUEGenomeCountriesLineagesMutationsInsertionsDeletionsUpdated:

CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF1ab/nsp3 : CodonNum = 251 & Codon = ggT

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF1ab/nsp3251G251GG1069GsynggAggT533500.09380863470-3472

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF1ab/nsp3251G251GggAggT50533All0.00001
ORF1ab/nsp3251G251GggAggT579B.1.617.20.000019
ORF1ab/nsp3251G251GggAggT1039B.1.1.70.000009
ORF1ab/nsp3251G251GggAggT318B.10.000027
ORF1ab/nsp3251G251GggAggT511AY.440.00003
ORF1ab/nsp3251G251GggAggT19AY.1030.000006
ORF1ab/nsp3251G251GggAggT39AY.50.000062
ORF1ab/nsp3251G251GggAggT57B.1.10.000091
ORF1ab/nsp3251G251GggAggT16B.1.20.000009
ORF1ab/nsp3251G251GggAggT34B.1.5960.000261
ORF1ab/nsp3251G251GggAggT12AY.1180.000063
ORF1ab/nsp3251G251GggAggT12AY.430.000004
ORF1ab/nsp3251G251GggAggT22B.1.1.5190.000079
ORF1ab/nsp3251G251GggAggT22B.1.5640.000852
ORF1ab/nsp3251G251GggAggT11AY.1140.000231
ORF1ab/nsp3251G251GggAggT11AY.46.60.000072
ORF1ab/nsp3251G251GggAggT11AY.470.000031
ORF1ab/nsp3251G251GggAggT11AY.60.000041
ORF1ab/nsp3251G251GggAggT11B.1.1.3060.000438
ORF1ab/nsp3251G251GggAggT11B.1.177.550.002331
ORF1ab/nsp3251G251GggAggT11B.1.36.280.005747
ORF1ab/nsp3251G251GggAggT11P.1.70.000319

CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk

CoV-GLUE uses sequence data from GISAID. GISAID data provided via this web application is subject to GISAID's Terms and Conditions.