CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF1ab/nsp3 : CodonNum = 246

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF1ab/nsp3246Y246YY1064YsyntaCtaT8912891213455-3457
ORF1ab/nsp3246Y246CY1064CnonsyntActGc7957910.9949693455-3457
ORF1ab/nsp3246Y246CY1064CnonsyntACtGT79540.005031453455-3457
ORF1ab/nsp3246Y246HY1064HnonsynTacCac18918913455-3457
ORF1ab/nsp3246Y246NY1064NnonsynTacAac41400.975613455-3457
ORF1ab/nsp3246Y246NY1064NnonsynTaCAaT4110.02439023455-3457
ORF1ab/nsp3246Y246delY1064deldelTAC---303013455-3457
ORF1ab/nsp3246Y246del1Y1064del1deltaCta-9913455-3457
ORF1ab/nsp3246Y246XY1064XnonsyntaCtaA750.7142863455-3457
ORF1ab/nsp3246Y246XY1064XnonsyntaCtaG720.2857143455-3457
ORF1ab/nsp3246Y246SY1064SnonsyntActCc4413455-3457
ORF1ab/nsp3246Y246del2Y1064del2deltACt--1113455-3457
ORF1ab/nsp3246Y246FY1064FnonsyntActTc1113455-3457
ORF1ab/nsp3246Y246DY1064DnonsynTaCGaT1113455-3457
ORF1ab/nsp3246Y246GY1064GnonsynTACGGT1113455-3457
ORF1ab/nsp3246Y246LY1064LnonsynTACCTT1113455-3457

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF1ab/nsp3246Y246YtaCtaT89128912All0.001705
ORF1ab/nsp3246Y246YtaCtaT75627562B.1.617.10.975239
ORF1ab/nsp3246Y246CtActGc791795All0.000151
ORF1ab/nsp3246Y246CtACtGT4795All0.000001
ORF1ab/nsp3246Y246CtActGc311311B.1.1770.004095
ORF1ab/nsp3246Y246YtaCtaT292292B.10.002675
ORF1ab/nsp3246Y246HTacCac189189All0.000036
ORF1ab/nsp3246Y246YtaCtaT179179AY.750.010028
ORF1ab/nsp3246Y246CtActGc178178B.1.617.20.00067
ORF1ab/nsp3246Y246YtaCtaT127127B.1.1.70.000114
ORF1ab/nsp3246Y246YtaCtaT111111B.1.1770.001462
ORF1ab/nsp3246Y246YtaCtaT100100AY.430.000443
ORF1ab/nsp3246Y246HTacCac6565AY.40.000101
ORF1ab/nsp3246Y246YtaCtaT6262AY.40.000096
ORF1ab/nsp3246Y246CtActGc5959B.1.1.70.000053
ORF1ab/nsp3246Y246CtActGc5151AY.1000.002346
ORF1ab/nsp3246Y246CtActGc5050B.1.1.250.028425
ORF1ab/nsp3246Y246YtaCtaT4646B.1.617.20.000173
ORF1ab/nsp3246Y246NTacAac4041All0.000008
ORF1ab/nsp3246Y246NTaCAaT141All0
ORF1ab/nsp3246Y246YtaCtaT4141B.1.177.620.048868
ORF1ab/nsp3246Y246HTacCac3535B.1.1.70.000031
ORF1ab/nsp3246Y246YtaCtaT3131AY.1030.000192
ORF1ab/nsp3246Y246delTAC---3030All0.000006
ORF1ab/nsp3246Y246YtaCtaT2828AY.440.00017
ORF1ab/nsp3246Y246YtaCtaT2626B.1.2140.095238
ORF1ab/nsp3246Y246HTacCac2424B.1.617.20.00009
ORF1ab/nsp3246Y246CtActGc2323AY.30.000229
ORF1ab/nsp3246Y246YtaCtaT2222B.1.3510.000654
ORF1ab/nsp3246Y246YtaCtaT2020AY.290.000315
ORF1ab/nsp3246Y246YtaCtaT1616B0.002045
ORF1ab/nsp3246Y246YtaCtaT1515AY.1130.002136
ORF1ab/nsp3246Y246NTacAac1515B.1.1.3020.03112
ORF1ab/nsp3246Y246YtaCtaT1414AY.740.001619
ORF1ab/nsp3246Y246YtaCtaT1313B.1.10.000236
ORF1ab/nsp3246Y246YtaCtaT1111B.1.177.70.001813
ORF1ab/nsp3246Y246CtActGc1010AY.290.000158
ORF1ab/nsp3246Y246YtaCtaT1010P.10.000158
ORF1ab/nsp3246Y246del1taCta-99All0.000002
ORF1ab/nsp3246Y246YtaCtaT99B.1.177.210.000688
ORF1ab/nsp3246Y246YtaCtaT88B.1.5170.003416
ORF1ab/nsp3246Y246XtaCtaA57All0.000001
ORF1ab/nsp3246Y246XtaCtaG27All0
ORF1ab/nsp3246Y246NTacAac77AY.1070.003262
ORF1ab/nsp3246Y246YtaCtaT77AY.16.10.003289
ORF1ab/nsp3246Y246CtActGc77AY.40.000011
ORF1ab/nsp3246Y246YtaCtaT77B.1.20.000062
ORF1ab/nsp3246Y246CtActGc66AY.200.000233
ORF1ab/nsp3246Y246YtaCtaT66B.1.258.210.046512
ORF1ab/nsp3246Y246CtActGc66B.1.4290.000141
ORF1ab/nsp3246Y246YtaCtaT55AY.1020.000133
ORF1ab/nsp3246Y246YtaCtaT55AY.390.000124
ORF1ab/nsp3246Y246YtaCtaT55AY.4.20.000108
ORF1ab/nsp3246Y246CtActGc55AY.430.000022
ORF1ab/nsp3246Y246YtaCtaT55AY.470.000156
ORF1ab/nsp3246Y246YtaCtaT55AY.75.10.000902
ORF1ab/nsp3246Y246CtActGc55B.10.000046
ORF1ab/nsp3246Y246HTacCac55B.10.000046
ORF1ab/nsp3246Y246del1taCta-55B.1.617.10.000645
ORF1ab/nsp3246Y246YtaCtaT44A0.001548
ORF1ab/nsp3246Y246StActCc44All0.000001
ORF1ab/nsp3246Y246CtActGc44AY.1030.000025
ORF1ab/nsp3246Y246YtaCtaT44AY.1100.000451
ORF1ab/nsp3246Y246YtaCtaT44AY.120.10.001284
ORF1ab/nsp3246Y246HTacCac44AY.440.000024
ORF1ab/nsp3246Y246delTAC---44B.10.000037
ORF1ab/nsp3246Y246YtaCtaT44B.1.177.80.00301
ORF1ab/nsp3246Y246HTacCac44B.1.20.000035
ORF1ab/nsp3246Y246CtActGc44B.1.20.000035
ORF1ab/nsp3246Y246YtaCtaT44B.1.2580.000266
ORF1ab/nsp3246Y246YtaCtaT44B.1.360.000584
ORF1ab/nsp3246Y246HTacCac44B.1.5260.000094
ORF1ab/nsp3246Y246YtaCtaT44B.1.5760.003626
ORF1ab/nsp3246Y246CtACtGT44B.1.617.10.000516
ORF1ab/nsp3246Y246CtActGc44P.10.000063
ORF1ab/nsp3246Y246CtActGc44P.1.120.001936
ORF1ab/nsp3246Y246YtaCtaT33AY.1210.000406
ORF1ab/nsp3246Y246CtActGc33AY.250.000018
ORF1ab/nsp3246Y246HTacCac33AY.250.000018
ORF1ab/nsp3246Y246YtaCtaT33AY.30.00003
ORF1ab/nsp3246Y246YtaCtaT33AY.320.001597
ORF1ab/nsp3246Y246YtaCtaT33AY.420.000121
ORF1ab/nsp3246Y246HTacCac33AY.430.000013
ORF1ab/nsp3246Y246CtActGc33AY.440.000018
ORF1ab/nsp3246Y246YtaCtaT33AY.450.000365
ORF1ab/nsp3246Y246CtActGc33AY.470.000093
ORF1ab/nsp3246Y246HTacCac33B.1.10.000054
ORF1ab/nsp3246Y246CtActGc33B.1.1.3060.001315
ORF1ab/nsp3246Y246YtaCtaT33B.1.1.3260.005282
ORF1ab/nsp3246Y246delTAC---33B.1.1.330.001263
ORF1ab/nsp3246Y246CtActGc33B.1.1.5190.000119
ORF1ab/nsp3246Y246HTacCac33B.1.1390.002199
ORF1ab/nsp3246Y246YtaCtaT33B.1.1570.008955
ORF1ab/nsp3246Y246NTacAac33B.1.1770.00004
ORF1ab/nsp3246Y246HTacCac33B.1.4270.000151
ORF1ab/nsp3246Y246NTacAac33B.1.617.20.000011
ORF1ab/nsp3246Y246CtActGc33P.1.140.000143
ORF1ab/nsp3246Y246CtActGc33P.1.70.000958
ORF1ab/nsp3246Y246NTacAac22A.23.10.001408
ORF1ab/nsp3246Y246YtaCtaT22AY.1000.000092
ORF1ab/nsp3246Y246HTacCac22AY.1030.000012
ORF1ab/nsp3246Y246YtaCtaT22AY.220.004184
ORF1ab/nsp3246Y246YtaCtaT22AY.240.000862
ORF1ab/nsp3246Y246YtaCtaT22AY.250.000012
ORF1ab/nsp3246Y246YtaCtaT22AY.260.000057
ORF1ab/nsp3246Y246StActCc22AY.560.00321
ORF1ab/nsp3246Y246YtaCtaT22AY.680.000547
ORF1ab/nsp3246Y246CtActGc22AY.9.20.000073
ORF1ab/nsp3246Y246YtaCtaT22AY.99.20.000184
ORF1ab/nsp3246Y246delTAC---22B.1.10.000036
ORF1ab/nsp3246Y246NTacAac22B.1.10.000036
ORF1ab/nsp3246Y246HTacCac22B.1.1.280.000622
ORF1ab/nsp3246Y246YtaCtaT22B.1.1.280.000622
ORF1ab/nsp3246Y246CtActGc22B.1.1.630.000772
ORF1ab/nsp3246Y246CtActGc22B.1.1600.000062
ORF1ab/nsp3246Y246HTacCac22B.1.3110.000549
ORF1ab/nsp3246Y246HTacCac22B.1.3510.000059
ORF1ab/nsp3246Y246YtaCtaT22B.1.36.160.002849
ORF1ab/nsp3246Y246CtActGc22B.1.3960.001411
ORF1ab/nsp3246Y246YtaCtaT22B.1.4270.000101
ORF1ab/nsp3246Y246YtaCtaT22B.1.5260.000047
ORF1ab/nsp3246Y246delTAC---22N.60.014184
ORF1ab/nsp3246Y246delTAC---22P.1.150.000465
ORF1ab/nsp3246Y246YtaCtaT22R.10.00018
ORF1ab/nsp3246Y246XtaCtaA110.055556
ORF1ab/nsp3246Y246YtaCtaT11A.2.50.000499
ORF1ab/nsp3246Y246YtaCtaT11A.23.10.000704
ORF1ab/nsp3246Y246XtaCtaA11A.270.001656
ORF1ab/nsp3246Y246FtActTc11All0
ORF1ab/nsp3246Y246del2tACt--11All0
ORF1ab/nsp3246Y246DTaCGaT11All0
ORF1ab/nsp3246Y246GTACGGT11All0
ORF1ab/nsp3246Y246LTACCTT11All0
ORF1ab/nsp3246Y246YtaCtaT11AW.10.003049
ORF1ab/nsp3246Y246delTAC---11AY.1000.000046
ORF1ab/nsp3246Y246CtActGc11AY.1010.00049
ORF1ab/nsp3246Y246HTacCac11AY.1020.000027
ORF1ab/nsp3246Y246CtActGc11AY.1020.000027
ORF1ab/nsp3246Y246DTaCGaT11AY.1030.000006
ORF1ab/nsp3246Y246YtaCtaT11AY.1090.00074
ORF1ab/nsp3246Y246delTAC---11AY.110.001339
ORF1ab/nsp3246Y246CtActGc11AY.1170.000085
ORF1ab/nsp3246Y246YtaCtaT11AY.1190.000035
ORF1ab/nsp3246Y246YtaCtaT11AY.1200.000037
ORF1ab/nsp3246Y246delTAC---11AY.1200.000037
ORF1ab/nsp3246Y246HTacCac11AY.130.000161
ORF1ab/nsp3246Y246YtaCtaT11AY.130.000161
ORF1ab/nsp3246Y246YtaCtaT11AY.160.00038
ORF1ab/nsp3246Y246YtaCtaT11AY.200.000039
ORF1ab/nsp3246Y246HTacCac11AY.200.000039
ORF1ab/nsp3246Y246HTacCac11AY.230.00007
ORF1ab/nsp3246Y246CtActGc11AY.260.000028
ORF1ab/nsp3246Y246YtaCtaT11AY.270.000065
ORF1ab/nsp3246Y246CtActGc11AY.270.000065
ORF1ab/nsp3246Y246YtaCtaT11AY.29.10.000221
ORF1ab/nsp3246Y246HTacCac11AY.30.00001
ORF1ab/nsp3246Y246CtActGc11AY.3.10.000085
ORF1ab/nsp3246Y246YtaCtaT11AY.3.10.000085
ORF1ab/nsp3246Y246HTacCac11AY.3.10.000085
ORF1ab/nsp3246Y246CtActGc11AY.330.000067
ORF1ab/nsp3246Y246YtaCtaT11AY.340.000097
ORF1ab/nsp3246Y246HTacCac11AY.340.000097
ORF1ab/nsp3246Y246YtaCtaT11AY.350.000233
ORF1ab/nsp3246Y246HTacCac11AY.350.000233
ORF1ab/nsp3246Y246del1taCta-11AY.350.000233
ORF1ab/nsp3246Y246HTacCac11AY.390.000025
ORF1ab/nsp3246Y246StActCc11AY.39.10.00004
ORF1ab/nsp3246Y246NTacAac11AY.40.000002
ORF1ab/nsp3246Y246HTacCac11AY.4.10.000737
ORF1ab/nsp3246Y246CtActGc11AY.4.20.000022
ORF1ab/nsp3246Y246YtaCtaT11AY.4.30.000842
ORF1ab/nsp3246Y246HTacCac11AY.460.000104
ORF1ab/nsp3246Y246YtaCtaT11AY.46.40.000165
ORF1ab/nsp3246Y246YtaCtaT11AY.480.000465
ORF1ab/nsp3246Y246YtaCtaT11AY.490.003195
ORF1ab/nsp3246Y246NTacAac11AY.5.40.000277
ORF1ab/nsp3246Y246YtaCtaT11AY.520.000814
ORF1ab/nsp3246Y246HTacCac11AY.540.000095
ORF1ab/nsp3246Y246YtaCtaT11AY.610.000105
ORF1ab/nsp3246Y246CtActGc11AY.620.000436
ORF1ab/nsp3246Y246delTAC---11AY.620.000436
ORF1ab/nsp3246Y246HTacCac11AY.670.000464
ORF1ab/nsp3246Y246YtaCtaT11AY.670.000464
ORF1ab/nsp3246Y246YtaCtaT11AY.710.000475
ORF1ab/nsp3246Y246CtActGc11AY.750.000056
ORF1ab/nsp3246Y246YtaCtaT11AY.760.004831
ORF1ab/nsp3246Y246CtActGc11AY.810.001992
ORF1ab/nsp3246Y246YtaCtaT11AY.840.000437
ORF1ab/nsp3246Y246StActCc11AY.850.000427
ORF1ab/nsp3246Y246delTAC---11AY.90.000068
ORF1ab/nsp3246Y246HTacCac11AY.90.000068
ORF1ab/nsp3246Y246CtActGc11AY.90.000068
ORF1ab/nsp3246Y246YtaCtaT11AY.9.20.000037
ORF1ab/nsp3246Y246HTacCac11AY.9.20.000037
ORF1ab/nsp3246Y246YtaCtaT11AY.920.000287
ORF1ab/nsp3246Y246CtActGc11AY.980.000079
ORF1ab/nsp3246Y246XtaCtaG11AY.980.000079
ORF1ab/nsp3246Y246CtActGc11AY.99.20.000092
ORF1ab/nsp3246Y246delTAC---11B0.000128
ORF1ab/nsp3246Y246NTacAac11B.10.000009
ORF1ab/nsp3246Y246del2tACt--11B.10.000009
ORF1ab/nsp3246Y246FtActTc11B.10.000009
ORF1ab/nsp3246Y246XtaCtaA11B.10.000009
ORF1ab/nsp3246Y246del1taCta-11B.10.000009
ORF1ab/nsp3246Y246delTAC---11B.1.1.1390.022727
ORF1ab/nsp3246Y246YtaCtaT11B.1.1.1700.001247
ORF1ab/nsp3246Y246CtActGc11B.1.1.1760.000439
ORF1ab/nsp3246Y246YtaCtaT11B.1.1.2220.000204
ORF1ab/nsp3246Y246YtaCtaT11B.1.1.2250.007194
ORF1ab/nsp3246Y246CtActGc11B.1.1.280.000311
ORF1ab/nsp3246Y246YtaCtaT11B.1.1.3060.000438
ORF1ab/nsp3246Y246YtaCtaT11B.1.1.3180.000302
ORF1ab/nsp3246Y246CtActGc11B.1.1.330.000421
ORF1ab/nsp3246Y246delTAC---11B.1.1.3480.000796
ORF1ab/nsp3246Y246CtActGc11B.1.1.4090.002833
ORF1ab/nsp3246Y246YtaCtaT11B.1.1.4290.004608
ORF1ab/nsp3246Y246CtActGc11B.1.1.5060.037037
ORF1ab/nsp3246Y246GTACGGT11B.1.1.70.000001
ORF1ab/nsp3246Y246XtaCtaG11B.1.1.70.000001
ORF1ab/nsp3246Y246LTACCTT11B.1.1.70.000001
ORF1ab/nsp3246Y246NTaCAaT11B.1.1.70.000001
ORF1ab/nsp3246Y246CtActGc11B.1.1570.002985
ORF1ab/nsp3246Y246HTacCac11B.1.1600.000031
ORF1ab/nsp3246Y246YtaCtaT11B.1.1600.000031
ORF1ab/nsp3246Y246CtActGc11B.1.177.210.000076
ORF1ab/nsp3246Y246YtaCtaT11B.1.177.230.003236
ORF1ab/nsp3246Y246CtActGc11B.1.177.270.009434
ORF1ab/nsp3246Y246HTacCac11B.1.177.440.000519
ORF1ab/nsp3246Y246HTacCac11B.1.177.600.000218
ORF1ab/nsp3246Y246YtaCtaT11B.1.177.730.000566
ORF1ab/nsp3246Y246YtaCtaT11B.1.177.860.000183
ORF1ab/nsp3246Y246del1taCta-11B.1.20.000009
ORF1ab/nsp3246Y246NTacAac11B.1.20.000009
ORF1ab/nsp3246Y246del1taCta-11B.1.2470.014925
ORF1ab/nsp3246Y246NTacAac11B.1.2580.000067
ORF1ab/nsp3246Y246delTAC---11B.1.258.170.000104
ORF1ab/nsp3246Y246NTacAac11B.1.3320.003497
ORF1ab/nsp3246Y246NTacAac11B.1.3510.00003
ORF1ab/nsp3246Y246CtActGc11B.1.3510.00003
ORF1ab/nsp3246Y246HTacCac11B.1.360.000146
ORF1ab/nsp3246Y246HTacCac11B.1.36.160.001425
ORF1ab/nsp3246Y246CtActGc11B.1.36.290.000517
ORF1ab/nsp3246Y246YtaCtaT11B.1.36.290.000517
ORF1ab/nsp3246Y246YtaCtaT11B.1.3670.000792
ORF1ab/nsp3246Y246YtaCtaT11B.1.3690.000285
ORF1ab/nsp3246Y246YtaCtaT11B.1.3960.000706
ORF1ab/nsp3246Y246YtaCtaT11B.1.400.10.015152
ORF1ab/nsp3246Y246YtaCtaT11B.1.4290.000024
ORF1ab/nsp3246Y246HTacCac11B.1.4290.000024
ORF1ab/nsp3246Y246delTAC---11B.1.4290.000024
ORF1ab/nsp3246Y246XtaCtaA11B.1.466.20.000391
ORF1ab/nsp3246Y246CtActGc11B.1.4740.001901
ORF1ab/nsp3246Y246HTacCac11B.1.4990.00105
ORF1ab/nsp3246Y246CtActGc11B.1.5250.000113
ORF1ab/nsp3246Y246NTacAac11B.1.5250.000113
ORF1ab/nsp3246Y246YtaCtaT11B.1.5370.02
ORF1ab/nsp3246Y246YtaCtaT11B.1.5600.00463
ORF1ab/nsp3246Y246HTacCac11B.1.5640.000426
ORF1ab/nsp3246Y246XtaCtaA11B.1.5690.014493
ORF1ab/nsp3246Y246CtActGc11B.1.5760.000907
ORF1ab/nsp3246Y246CtActGc11B.1.5880.00091
ORF1ab/nsp3246Y246CtActGc11B.1.5960.000087
ORF1ab/nsp3246Y246HTacCac11B.1.5960.000087
ORF1ab/nsp3246Y246delTAC---11B.1.617.20.000004
ORF1ab/nsp3246Y246CtActGc11B.1.6180.004032
ORF1ab/nsp3246Y246CtActGc11B.1.6210.000089
ORF1ab/nsp3246Y246YtaCtaT11B.1.6210.000089
ORF1ab/nsp3246Y246delTAC---11B.1.6300.005236
ORF1ab/nsp3246Y246CtActGc11B.400.000364
ORF1ab/nsp3246Y246delTAC---11B.420.033333
ORF1ab/nsp3246Y246YtaCtaT11B.610.005747
ORF1ab/nsp3246Y246delTAC---11C.170.055556
ORF1ab/nsp3246Y246YtaCtaT11C.350.000774
ORF1ab/nsp3246Y246CtActGc11C.370.000116
ORF1ab/nsp3246Y246CtActGc11D.20.000075
ORF1ab/nsp3246Y246YtaCtaT11D.20.000075
ORF1ab/nsp3246Y246YtaCtaT11D.50.004975
ORF1ab/nsp3246Y246delTAC---11P.10.000016
ORF1ab/nsp3246Y246HTacCac11P.10.000016
ORF1ab/nsp3246Y246YtaCtaT11P.1.140.000048
ORF1ab/nsp3246Y246CtActGc11P.1.170.000162
ORF1ab/nsp3246Y246YtaCtaT11P.1.70.000319
ORF1ab/nsp3246Y246delTAC---11Q.80.000165
ORF1ab/nsp3246Y246delTAC---11R.10.00009