CoV-GLUE | Mutations | Mutation
Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):
ORF | CodonNum | Mut | ORF1abMut | MutType | RefCodon | MutCodon | AACount | CodonCount | CodonProp | Genome Position |
ORF1ab/nsp3 | 246 | Y246Y | Y1064Y | syn | taC | taT | 8912 | 8912 | 1 | 3455-3457 |
ORF1ab/nsp3 | 246 | Y246C | Y1064C | nonsyn | tAc | tGc | 795 | 791 | 0.994969 | 3455-3457 |
ORF1ab/nsp3 | 246 | Y246C | Y1064C | nonsyn | tAC | tGT | 795 | 4 | 0.00503145 | 3455-3457 |
ORF1ab/nsp3 | 246 | Y246H | Y1064H | nonsyn | Tac | Cac | 189 | 189 | 1 | 3455-3457 |
ORF1ab/nsp3 | 246 | Y246N | Y1064N | nonsyn | Tac | Aac | 41 | 40 | 0.97561 | 3455-3457 |
ORF1ab/nsp3 | 246 | Y246N | Y1064N | nonsyn | TaC | AaT | 41 | 1 | 0.0243902 | 3455-3457 |
ORF1ab/nsp3 | 246 | Y246del | Y1064del | del | TAC | --- | 30 | 30 | 1 | 3455-3457 |
ORF1ab/nsp3 | 246 | Y246del1 | Y1064del1 | del | taC | ta- | 9 | 9 | 1 | 3455-3457 |
ORF1ab/nsp3 | 246 | Y246X | Y1064X | nonsyn | taC | taA | 7 | 5 | 0.714286 | 3455-3457 |
ORF1ab/nsp3 | 246 | Y246X | Y1064X | nonsyn | taC | taG | 7 | 2 | 0.285714 | 3455-3457 |
ORF1ab/nsp3 | 246 | Y246S | Y1064S | nonsyn | tAc | tCc | 4 | 4 | 1 | 3455-3457 |
ORF1ab/nsp3 | 246 | Y246del2 | Y1064del2 | del | tAC | t-- | 1 | 1 | 1 | 3455-3457 |
ORF1ab/nsp3 | 246 | Y246F | Y1064F | nonsyn | tAc | tTc | 1 | 1 | 1 | 3455-3457 |
ORF1ab/nsp3 | 246 | Y246D | Y1064D | nonsyn | TaC | GaT | 1 | 1 | 1 | 3455-3457 |
ORF1ab/nsp3 | 246 | Y246G | Y1064G | nonsyn | TAC | GGT | 1 | 1 | 1 | 3455-3457 |
ORF1ab/nsp3 | 246 | Y246L | Y1064L | nonsyn | TAC | CTT | 1 | 1 | 1 | 3455-3457 |
Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):
ORF | CodonNum | Mut | RefCodon | MutCodon | CodonCount | AACount | Lineage | LineageCodonProp |
ORF1ab/nsp3 | 246 | Y246Y | taC | taT | 8912 | 8912 | All | 0.001705 |
ORF1ab/nsp3 | 246 | Y246Y | taC | taT | 7562 | 7562 | B.1.617.1 | 0.975239 |
ORF1ab/nsp3 | 246 | Y246C | tAc | tGc | 791 | 795 | All | 0.000151 |
ORF1ab/nsp3 | 246 | Y246C | tAC | tGT | 4 | 795 | All | 0.000001 |
ORF1ab/nsp3 | 246 | Y246C | tAc | tGc | 311 | 311 | B.1.177 | 0.004095 |
ORF1ab/nsp3 | 246 | Y246Y | taC | taT | 292 | 292 | B.1 | 0.002675 |
ORF1ab/nsp3 | 246 | Y246H | Tac | Cac | 189 | 189 | All | 0.000036 |
ORF1ab/nsp3 | 246 | Y246Y | taC | taT | 179 | 179 | AY.75 | 0.010028 |
ORF1ab/nsp3 | 246 | Y246C | tAc | tGc | 178 | 178 | B.1.617.2 | 0.00067 |
ORF1ab/nsp3 | 246 | Y246Y | taC | taT | 127 | 127 | B.1.1.7 | 0.000114 |
ORF1ab/nsp3 | 246 | Y246Y | taC | taT | 111 | 111 | B.1.177 | 0.001462 |
ORF1ab/nsp3 | 246 | Y246Y | taC | taT | 100 | 100 | AY.43 | 0.000443 |
ORF1ab/nsp3 | 246 | Y246H | Tac | Cac | 65 | 65 | AY.4 | 0.000101 |
ORF1ab/nsp3 | 246 | Y246Y | taC | taT | 62 | 62 | AY.4 | 0.000096 |
ORF1ab/nsp3 | 246 | Y246C | tAc | tGc | 59 | 59 | B.1.1.7 | 0.000053 |
ORF1ab/nsp3 | 246 | Y246C | tAc | tGc | 51 | 51 | AY.100 | 0.002346 |
ORF1ab/nsp3 | 246 | Y246C | tAc | tGc | 50 | 50 | B.1.1.25 | 0.028425 |
ORF1ab/nsp3 | 246 | Y246Y | taC | taT | 46 | 46 | B.1.617.2 | 0.000173 |
ORF1ab/nsp3 | 246 | Y246N | Tac | Aac | 40 | 41 | All | 0.000008 |
ORF1ab/nsp3 | 246 | Y246N | TaC | AaT | 1 | 41 | All | 0 |
ORF1ab/nsp3 | 246 | Y246Y | taC | taT | 41 | 41 | B.1.177.62 | 0.048868 |
ORF1ab/nsp3 | 246 | Y246H | Tac | Cac | 35 | 35 | B.1.1.7 | 0.000031 |
ORF1ab/nsp3 | 246 | Y246Y | taC | taT | 31 | 31 | AY.103 | 0.000192 |
ORF1ab/nsp3 | 246 | Y246del | TAC | --- | 30 | 30 | All | 0.000006 |
ORF1ab/nsp3 | 246 | Y246Y | taC | taT | 28 | 28 | AY.44 | 0.00017 |
ORF1ab/nsp3 | 246 | Y246Y | taC | taT | 26 | 26 | B.1.214 | 0.095238 |
ORF1ab/nsp3 | 246 | Y246H | Tac | Cac | 24 | 24 | B.1.617.2 | 0.00009 |
ORF1ab/nsp3 | 246 | Y246C | tAc | tGc | 23 | 23 | AY.3 | 0.000229 |
ORF1ab/nsp3 | 246 | Y246Y | taC | taT | 22 | 22 | B.1.351 | 0.000654 |
ORF1ab/nsp3 | 246 | Y246Y | taC | taT | 20 | 20 | AY.29 | 0.000315 |
ORF1ab/nsp3 | 246 | Y246Y | taC | taT | 16 | 16 | B | 0.002045 |
ORF1ab/nsp3 | 246 | Y246Y | taC | taT | 15 | 15 | AY.113 | 0.002136 |
ORF1ab/nsp3 | 246 | Y246N | Tac | Aac | 15 | 15 | B.1.1.302 | 0.03112 |
ORF1ab/nsp3 | 246 | Y246Y | taC | taT | 14 | 14 | AY.74 | 0.001619 |
ORF1ab/nsp3 | 246 | Y246Y | taC | taT | 13 | 13 | B.1.1 | 0.000236 |
ORF1ab/nsp3 | 246 | Y246Y | taC | taT | 11 | 11 | B.1.177.7 | 0.001813 |
ORF1ab/nsp3 | 246 | Y246C | tAc | tGc | 10 | 10 | AY.29 | 0.000158 |
ORF1ab/nsp3 | 246 | Y246Y | taC | taT | 10 | 10 | P.1 | 0.000158 |
ORF1ab/nsp3 | 246 | Y246del1 | taC | ta- | 9 | 9 | All | 0.000002 |
ORF1ab/nsp3 | 246 | Y246Y | taC | taT | 9 | 9 | B.1.177.21 | 0.000688 |
ORF1ab/nsp3 | 246 | Y246Y | taC | taT | 8 | 8 | B.1.517 | 0.003416 |
ORF1ab/nsp3 | 246 | Y246X | taC | taA | 5 | 7 | All | 0.000001 |
ORF1ab/nsp3 | 246 | Y246X | taC | taG | 2 | 7 | All | 0 |
ORF1ab/nsp3 | 246 | Y246N | Tac | Aac | 7 | 7 | AY.107 | 0.003262 |
ORF1ab/nsp3 | 246 | Y246Y | taC | taT | 7 | 7 | AY.16.1 | 0.003289 |
ORF1ab/nsp3 | 246 | Y246C | tAc | tGc | 7 | 7 | AY.4 | 0.000011 |
ORF1ab/nsp3 | 246 | Y246Y | taC | taT | 7 | 7 | B.1.2 | 0.000062 |
ORF1ab/nsp3 | 246 | Y246C | tAc | tGc | 6 | 6 | AY.20 | 0.000233 |
ORF1ab/nsp3 | 246 | Y246Y | taC | taT | 6 | 6 | B.1.258.21 | 0.046512 |
ORF1ab/nsp3 | 246 | Y246C | tAc | tGc | 6 | 6 | B.1.429 | 0.000141 |
ORF1ab/nsp3 | 246 | Y246Y | taC | taT | 5 | 5 | AY.102 | 0.000133 |
ORF1ab/nsp3 | 246 | Y246Y | taC | taT | 5 | 5 | AY.39 | 0.000124 |
ORF1ab/nsp3 | 246 | Y246Y | taC | taT | 5 | 5 | AY.4.2 | 0.000108 |
ORF1ab/nsp3 | 246 | Y246C | tAc | tGc | 5 | 5 | AY.43 | 0.000022 |
ORF1ab/nsp3 | 246 | Y246Y | taC | taT | 5 | 5 | AY.47 | 0.000156 |
ORF1ab/nsp3 | 246 | Y246Y | taC | taT | 5 | 5 | AY.75.1 | 0.000902 |
ORF1ab/nsp3 | 246 | Y246C | tAc | tGc | 5 | 5 | B.1 | 0.000046 |
ORF1ab/nsp3 | 246 | Y246H | Tac | Cac | 5 | 5 | B.1 | 0.000046 |
ORF1ab/nsp3 | 246 | Y246del1 | taC | ta- | 5 | 5 | B.1.617.1 | 0.000645 |
ORF1ab/nsp3 | 246 | Y246Y | taC | taT | 4 | 4 | A | 0.001548 |
ORF1ab/nsp3 | 246 | Y246S | tAc | tCc | 4 | 4 | All | 0.000001 |
ORF1ab/nsp3 | 246 | Y246C | tAc | tGc | 4 | 4 | AY.103 | 0.000025 |
ORF1ab/nsp3 | 246 | Y246Y | taC | taT | 4 | 4 | AY.110 | 0.000451 |
ORF1ab/nsp3 | 246 | Y246Y | taC | taT | 4 | 4 | AY.120.1 | 0.001284 |
ORF1ab/nsp3 | 246 | Y246H | Tac | Cac | 4 | 4 | AY.44 | 0.000024 |
ORF1ab/nsp3 | 246 | Y246del | TAC | --- | 4 | 4 | B.1 | 0.000037 |
ORF1ab/nsp3 | 246 | Y246Y | taC | taT | 4 | 4 | B.1.177.8 | 0.00301 |
ORF1ab/nsp3 | 246 | Y246H | Tac | Cac | 4 | 4 | B.1.2 | 0.000035 |
ORF1ab/nsp3 | 246 | Y246C | tAc | tGc | 4 | 4 | B.1.2 | 0.000035 |
ORF1ab/nsp3 | 246 | Y246Y | taC | taT | 4 | 4 | B.1.258 | 0.000266 |
ORF1ab/nsp3 | 246 | Y246Y | taC | taT | 4 | 4 | B.1.36 | 0.000584 |
ORF1ab/nsp3 | 246 | Y246H | Tac | Cac | 4 | 4 | B.1.526 | 0.000094 |
ORF1ab/nsp3 | 246 | Y246Y | taC | taT | 4 | 4 | B.1.576 | 0.003626 |
ORF1ab/nsp3 | 246 | Y246C | tAC | tGT | 4 | 4 | B.1.617.1 | 0.000516 |
ORF1ab/nsp3 | 246 | Y246C | tAc | tGc | 4 | 4 | P.1 | 0.000063 |
ORF1ab/nsp3 | 246 | Y246C | tAc | tGc | 4 | 4 | P.1.12 | 0.001936 |
ORF1ab/nsp3 | 246 | Y246Y | taC | taT | 3 | 3 | AY.121 | 0.000406 |
ORF1ab/nsp3 | 246 | Y246C | tAc | tGc | 3 | 3 | AY.25 | 0.000018 |
ORF1ab/nsp3 | 246 | Y246H | Tac | Cac | 3 | 3 | AY.25 | 0.000018 |
ORF1ab/nsp3 | 246 | Y246Y | taC | taT | 3 | 3 | AY.3 | 0.00003 |
ORF1ab/nsp3 | 246 | Y246Y | taC | taT | 3 | 3 | AY.32 | 0.001597 |
ORF1ab/nsp3 | 246 | Y246Y | taC | taT | 3 | 3 | AY.42 | 0.000121 |
ORF1ab/nsp3 | 246 | Y246H | Tac | Cac | 3 | 3 | AY.43 | 0.000013 |
ORF1ab/nsp3 | 246 | Y246C | tAc | tGc | 3 | 3 | AY.44 | 0.000018 |
ORF1ab/nsp3 | 246 | Y246Y | taC | taT | 3 | 3 | AY.45 | 0.000365 |
ORF1ab/nsp3 | 246 | Y246C | tAc | tGc | 3 | 3 | AY.47 | 0.000093 |
ORF1ab/nsp3 | 246 | Y246H | Tac | Cac | 3 | 3 | B.1.1 | 0.000054 |
ORF1ab/nsp3 | 246 | Y246C | tAc | tGc | 3 | 3 | B.1.1.306 | 0.001315 |
ORF1ab/nsp3 | 246 | Y246Y | taC | taT | 3 | 3 | B.1.1.326 | 0.005282 |
ORF1ab/nsp3 | 246 | Y246del | TAC | --- | 3 | 3 | B.1.1.33 | 0.001263 |
ORF1ab/nsp3 | 246 | Y246C | tAc | tGc | 3 | 3 | B.1.1.519 | 0.000119 |
ORF1ab/nsp3 | 246 | Y246H | Tac | Cac | 3 | 3 | B.1.139 | 0.002199 |
ORF1ab/nsp3 | 246 | Y246Y | taC | taT | 3 | 3 | B.1.157 | 0.008955 |
ORF1ab/nsp3 | 246 | Y246N | Tac | Aac | 3 | 3 | B.1.177 | 0.00004 |
ORF1ab/nsp3 | 246 | Y246H | Tac | Cac | 3 | 3 | B.1.427 | 0.000151 |
ORF1ab/nsp3 | 246 | Y246N | Tac | Aac | 3 | 3 | B.1.617.2 | 0.000011 |
ORF1ab/nsp3 | 246 | Y246C | tAc | tGc | 3 | 3 | P.1.14 | 0.000143 |
ORF1ab/nsp3 | 246 | Y246C | tAc | tGc | 3 | 3 | P.1.7 | 0.000958 |
ORF1ab/nsp3 | 246 | Y246N | Tac | Aac | 2 | 2 | A.23.1 | 0.001408 |
ORF1ab/nsp3 | 246 | Y246Y | taC | taT | 2 | 2 | AY.100 | 0.000092 |
ORF1ab/nsp3 | 246 | Y246H | Tac | Cac | 2 | 2 | AY.103 | 0.000012 |
ORF1ab/nsp3 | 246 | Y246Y | taC | taT | 2 | 2 | AY.22 | 0.004184 |
ORF1ab/nsp3 | 246 | Y246Y | taC | taT | 2 | 2 | AY.24 | 0.000862 |
ORF1ab/nsp3 | 246 | Y246Y | taC | taT | 2 | 2 | AY.25 | 0.000012 |
ORF1ab/nsp3 | 246 | Y246Y | taC | taT | 2 | 2 | AY.26 | 0.000057 |
ORF1ab/nsp3 | 246 | Y246S | tAc | tCc | 2 | 2 | AY.56 | 0.00321 |
ORF1ab/nsp3 | 246 | Y246Y | taC | taT | 2 | 2 | AY.68 | 0.000547 |
ORF1ab/nsp3 | 246 | Y246C | tAc | tGc | 2 | 2 | AY.9.2 | 0.000073 |
ORF1ab/nsp3 | 246 | Y246Y | taC | taT | 2 | 2 | AY.99.2 | 0.000184 |
ORF1ab/nsp3 | 246 | Y246del | TAC | --- | 2 | 2 | B.1.1 | 0.000036 |
ORF1ab/nsp3 | 246 | Y246N | Tac | Aac | 2 | 2 | B.1.1 | 0.000036 |
ORF1ab/nsp3 | 246 | Y246H | Tac | Cac | 2 | 2 | B.1.1.28 | 0.000622 |
ORF1ab/nsp3 | 246 | Y246Y | taC | taT | 2 | 2 | B.1.1.28 | 0.000622 |
ORF1ab/nsp3 | 246 | Y246C | tAc | tGc | 2 | 2 | B.1.1.63 | 0.000772 |
ORF1ab/nsp3 | 246 | Y246C | tAc | tGc | 2 | 2 | B.1.160 | 0.000062 |
ORF1ab/nsp3 | 246 | Y246H | Tac | Cac | 2 | 2 | B.1.311 | 0.000549 |
ORF1ab/nsp3 | 246 | Y246H | Tac | Cac | 2 | 2 | B.1.351 | 0.000059 |
ORF1ab/nsp3 | 246 | Y246Y | taC | taT | 2 | 2 | B.1.36.16 | 0.002849 |
ORF1ab/nsp3 | 246 | Y246C | tAc | tGc | 2 | 2 | B.1.396 | 0.001411 |
ORF1ab/nsp3 | 246 | Y246Y | taC | taT | 2 | 2 | B.1.427 | 0.000101 |
ORF1ab/nsp3 | 246 | Y246Y | taC | taT | 2 | 2 | B.1.526 | 0.000047 |
ORF1ab/nsp3 | 246 | Y246del | TAC | --- | 2 | 2 | N.6 | 0.014184 |
ORF1ab/nsp3 | 246 | Y246del | TAC | --- | 2 | 2 | P.1.15 | 0.000465 |
ORF1ab/nsp3 | 246 | Y246Y | taC | taT | 2 | 2 | R.1 | 0.00018 |
ORF1ab/nsp3 | 246 | Y246X | taC | taA | 1 | 1 | 0.055556 | |
ORF1ab/nsp3 | 246 | Y246Y | taC | taT | 1 | 1 | A.2.5 | 0.000499 |
ORF1ab/nsp3 | 246 | Y246Y | taC | taT | 1 | 1 | A.23.1 | 0.000704 |
ORF1ab/nsp3 | 246 | Y246X | taC | taA | 1 | 1 | A.27 | 0.001656 |
ORF1ab/nsp3 | 246 | Y246F | tAc | tTc | 1 | 1 | All | 0 |
ORF1ab/nsp3 | 246 | Y246del2 | tAC | t-- | 1 | 1 | All | 0 |
ORF1ab/nsp3 | 246 | Y246D | TaC | GaT | 1 | 1 | All | 0 |
ORF1ab/nsp3 | 246 | Y246G | TAC | GGT | 1 | 1 | All | 0 |
ORF1ab/nsp3 | 246 | Y246L | TAC | CTT | 1 | 1 | All | 0 |
ORF1ab/nsp3 | 246 | Y246Y | taC | taT | 1 | 1 | AW.1 | 0.003049 |
ORF1ab/nsp3 | 246 | Y246del | TAC | --- | 1 | 1 | AY.100 | 0.000046 |
ORF1ab/nsp3 | 246 | Y246C | tAc | tGc | 1 | 1 | AY.101 | 0.00049 |
ORF1ab/nsp3 | 246 | Y246H | Tac | Cac | 1 | 1 | AY.102 | 0.000027 |
ORF1ab/nsp3 | 246 | Y246C | tAc | tGc | 1 | 1 | AY.102 | 0.000027 |
ORF1ab/nsp3 | 246 | Y246D | TaC | GaT | 1 | 1 | AY.103 | 0.000006 |
ORF1ab/nsp3 | 246 | Y246Y | taC | taT | 1 | 1 | AY.109 | 0.00074 |
ORF1ab/nsp3 | 246 | Y246del | TAC | --- | 1 | 1 | AY.11 | 0.001339 |
ORF1ab/nsp3 | 246 | Y246C | tAc | tGc | 1 | 1 | AY.117 | 0.000085 |
ORF1ab/nsp3 | 246 | Y246Y | taC | taT | 1 | 1 | AY.119 | 0.000035 |
ORF1ab/nsp3 | 246 | Y246Y | taC | taT | 1 | 1 | AY.120 | 0.000037 |
ORF1ab/nsp3 | 246 | Y246del | TAC | --- | 1 | 1 | AY.120 | 0.000037 |
ORF1ab/nsp3 | 246 | Y246H | Tac | Cac | 1 | 1 | AY.13 | 0.000161 |
ORF1ab/nsp3 | 246 | Y246Y | taC | taT | 1 | 1 | AY.13 | 0.000161 |
ORF1ab/nsp3 | 246 | Y246Y | taC | taT | 1 | 1 | AY.16 | 0.00038 |
ORF1ab/nsp3 | 246 | Y246Y | taC | taT | 1 | 1 | AY.20 | 0.000039 |
ORF1ab/nsp3 | 246 | Y246H | Tac | Cac | 1 | 1 | AY.20 | 0.000039 |
ORF1ab/nsp3 | 246 | Y246H | Tac | Cac | 1 | 1 | AY.23 | 0.00007 |
ORF1ab/nsp3 | 246 | Y246C | tAc | tGc | 1 | 1 | AY.26 | 0.000028 |
ORF1ab/nsp3 | 246 | Y246Y | taC | taT | 1 | 1 | AY.27 | 0.000065 |
ORF1ab/nsp3 | 246 | Y246C | tAc | tGc | 1 | 1 | AY.27 | 0.000065 |
ORF1ab/nsp3 | 246 | Y246Y | taC | taT | 1 | 1 | AY.29.1 | 0.000221 |
ORF1ab/nsp3 | 246 | Y246H | Tac | Cac | 1 | 1 | AY.3 | 0.00001 |
ORF1ab/nsp3 | 246 | Y246C | tAc | tGc | 1 | 1 | AY.3.1 | 0.000085 |
ORF1ab/nsp3 | 246 | Y246Y | taC | taT | 1 | 1 | AY.3.1 | 0.000085 |
ORF1ab/nsp3 | 246 | Y246H | Tac | Cac | 1 | 1 | AY.3.1 | 0.000085 |
ORF1ab/nsp3 | 246 | Y246C | tAc | tGc | 1 | 1 | AY.33 | 0.000067 |
ORF1ab/nsp3 | 246 | Y246Y | taC | taT | 1 | 1 | AY.34 | 0.000097 |
ORF1ab/nsp3 | 246 | Y246H | Tac | Cac | 1 | 1 | AY.34 | 0.000097 |
ORF1ab/nsp3 | 246 | Y246Y | taC | taT | 1 | 1 | AY.35 | 0.000233 |
ORF1ab/nsp3 | 246 | Y246H | Tac | Cac | 1 | 1 | AY.35 | 0.000233 |
ORF1ab/nsp3 | 246 | Y246del1 | taC | ta- | 1 | 1 | AY.35 | 0.000233 |
ORF1ab/nsp3 | 246 | Y246H | Tac | Cac | 1 | 1 | AY.39 | 0.000025 |
ORF1ab/nsp3 | 246 | Y246S | tAc | tCc | 1 | 1 | AY.39.1 | 0.00004 |
ORF1ab/nsp3 | 246 | Y246N | Tac | Aac | 1 | 1 | AY.4 | 0.000002 |
ORF1ab/nsp3 | 246 | Y246H | Tac | Cac | 1 | 1 | AY.4.1 | 0.000737 |
ORF1ab/nsp3 | 246 | Y246C | tAc | tGc | 1 | 1 | AY.4.2 | 0.000022 |
ORF1ab/nsp3 | 246 | Y246Y | taC | taT | 1 | 1 | AY.4.3 | 0.000842 |
ORF1ab/nsp3 | 246 | Y246H | Tac | Cac | 1 | 1 | AY.46 | 0.000104 |
ORF1ab/nsp3 | 246 | Y246Y | taC | taT | 1 | 1 | AY.46.4 | 0.000165 |
ORF1ab/nsp3 | 246 | Y246Y | taC | taT | 1 | 1 | AY.48 | 0.000465 |
ORF1ab/nsp3 | 246 | Y246Y | taC | taT | 1 | 1 | AY.49 | 0.003195 |
ORF1ab/nsp3 | 246 | Y246N | Tac | Aac | 1 | 1 | AY.5.4 | 0.000277 |
ORF1ab/nsp3 | 246 | Y246Y | taC | taT | 1 | 1 | AY.52 | 0.000814 |
ORF1ab/nsp3 | 246 | Y246H | Tac | Cac | 1 | 1 | AY.54 | 0.000095 |
ORF1ab/nsp3 | 246 | Y246Y | taC | taT | 1 | 1 | AY.61 | 0.000105 |
ORF1ab/nsp3 | 246 | Y246C | tAc | tGc | 1 | 1 | AY.62 | 0.000436 |
ORF1ab/nsp3 | 246 | Y246del | TAC | --- | 1 | 1 | AY.62 | 0.000436 |
ORF1ab/nsp3 | 246 | Y246H | Tac | Cac | 1 | 1 | AY.67 | 0.000464 |
ORF1ab/nsp3 | 246 | Y246Y | taC | taT | 1 | 1 | AY.67 | 0.000464 |
ORF1ab/nsp3 | 246 | Y246Y | taC | taT | 1 | 1 | AY.71 | 0.000475 |
ORF1ab/nsp3 | 246 | Y246C | tAc | tGc | 1 | 1 | AY.75 | 0.000056 |
ORF1ab/nsp3 | 246 | Y246Y | taC | taT | 1 | 1 | AY.76 | 0.004831 |
ORF1ab/nsp3 | 246 | Y246C | tAc | tGc | 1 | 1 | AY.81 | 0.001992 |
ORF1ab/nsp3 | 246 | Y246Y | taC | taT | 1 | 1 | AY.84 | 0.000437 |
ORF1ab/nsp3 | 246 | Y246S | tAc | tCc | 1 | 1 | AY.85 | 0.000427 |
ORF1ab/nsp3 | 246 | Y246del | TAC | --- | 1 | 1 | AY.9 | 0.000068 |
ORF1ab/nsp3 | 246 | Y246H | Tac | Cac | 1 | 1 | AY.9 | 0.000068 |
ORF1ab/nsp3 | 246 | Y246C | tAc | tGc | 1 | 1 | AY.9 | 0.000068 |
ORF1ab/nsp3 | 246 | Y246Y | taC | taT | 1 | 1 | AY.9.2 | 0.000037 |
ORF1ab/nsp3 | 246 | Y246H | Tac | Cac | 1 | 1 | AY.9.2 | 0.000037 |
ORF1ab/nsp3 | 246 | Y246Y | taC | taT | 1 | 1 | AY.92 | 0.000287 |
ORF1ab/nsp3 | 246 | Y246C | tAc | tGc | 1 | 1 | AY.98 | 0.000079 |
ORF1ab/nsp3 | 246 | Y246X | taC | taG | 1 | 1 | AY.98 | 0.000079 |
ORF1ab/nsp3 | 246 | Y246C | tAc | tGc | 1 | 1 | AY.99.2 | 0.000092 |
ORF1ab/nsp3 | 246 | Y246del | TAC | --- | 1 | 1 | B | 0.000128 |
ORF1ab/nsp3 | 246 | Y246N | Tac | Aac | 1 | 1 | B.1 | 0.000009 |
ORF1ab/nsp3 | 246 | Y246del2 | tAC | t-- | 1 | 1 | B.1 | 0.000009 |
ORF1ab/nsp3 | 246 | Y246F | tAc | tTc | 1 | 1 | B.1 | 0.000009 |
ORF1ab/nsp3 | 246 | Y246X | taC | taA | 1 | 1 | B.1 | 0.000009 |
ORF1ab/nsp3 | 246 | Y246del1 | taC | ta- | 1 | 1 | B.1 | 0.000009 |
ORF1ab/nsp3 | 246 | Y246del | TAC | --- | 1 | 1 | B.1.1.139 | 0.022727 |
ORF1ab/nsp3 | 246 | Y246Y | taC | taT | 1 | 1 | B.1.1.170 | 0.001247 |
ORF1ab/nsp3 | 246 | Y246C | tAc | tGc | 1 | 1 | B.1.1.176 | 0.000439 |
ORF1ab/nsp3 | 246 | Y246Y | taC | taT | 1 | 1 | B.1.1.222 | 0.000204 |
ORF1ab/nsp3 | 246 | Y246Y | taC | taT | 1 | 1 | B.1.1.225 | 0.007194 |
ORF1ab/nsp3 | 246 | Y246C | tAc | tGc | 1 | 1 | B.1.1.28 | 0.000311 |
ORF1ab/nsp3 | 246 | Y246Y | taC | taT | 1 | 1 | B.1.1.306 | 0.000438 |
ORF1ab/nsp3 | 246 | Y246Y | taC | taT | 1 | 1 | B.1.1.318 | 0.000302 |
ORF1ab/nsp3 | 246 | Y246C | tAc | tGc | 1 | 1 | B.1.1.33 | 0.000421 |
ORF1ab/nsp3 | 246 | Y246del | TAC | --- | 1 | 1 | B.1.1.348 | 0.000796 |
ORF1ab/nsp3 | 246 | Y246C | tAc | tGc | 1 | 1 | B.1.1.409 | 0.002833 |
ORF1ab/nsp3 | 246 | Y246Y | taC | taT | 1 | 1 | B.1.1.429 | 0.004608 |
ORF1ab/nsp3 | 246 | Y246C | tAc | tGc | 1 | 1 | B.1.1.506 | 0.037037 |
ORF1ab/nsp3 | 246 | Y246G | TAC | GGT | 1 | 1 | B.1.1.7 | 0.000001 |
ORF1ab/nsp3 | 246 | Y246X | taC | taG | 1 | 1 | B.1.1.7 | 0.000001 |
ORF1ab/nsp3 | 246 | Y246L | TAC | CTT | 1 | 1 | B.1.1.7 | 0.000001 |
ORF1ab/nsp3 | 246 | Y246N | TaC | AaT | 1 | 1 | B.1.1.7 | 0.000001 |
ORF1ab/nsp3 | 246 | Y246C | tAc | tGc | 1 | 1 | B.1.157 | 0.002985 |
ORF1ab/nsp3 | 246 | Y246H | Tac | Cac | 1 | 1 | B.1.160 | 0.000031 |
ORF1ab/nsp3 | 246 | Y246Y | taC | taT | 1 | 1 | B.1.160 | 0.000031 |
ORF1ab/nsp3 | 246 | Y246C | tAc | tGc | 1 | 1 | B.1.177.21 | 0.000076 |
ORF1ab/nsp3 | 246 | Y246Y | taC | taT | 1 | 1 | B.1.177.23 | 0.003236 |
ORF1ab/nsp3 | 246 | Y246C | tAc | tGc | 1 | 1 | B.1.177.27 | 0.009434 |
ORF1ab/nsp3 | 246 | Y246H | Tac | Cac | 1 | 1 | B.1.177.44 | 0.000519 |
ORF1ab/nsp3 | 246 | Y246H | Tac | Cac | 1 | 1 | B.1.177.60 | 0.000218 |
ORF1ab/nsp3 | 246 | Y246Y | taC | taT | 1 | 1 | B.1.177.73 | 0.000566 |
ORF1ab/nsp3 | 246 | Y246Y | taC | taT | 1 | 1 | B.1.177.86 | 0.000183 |
ORF1ab/nsp3 | 246 | Y246del1 | taC | ta- | 1 | 1 | B.1.2 | 0.000009 |
ORF1ab/nsp3 | 246 | Y246N | Tac | Aac | 1 | 1 | B.1.2 | 0.000009 |
ORF1ab/nsp3 | 246 | Y246del1 | taC | ta- | 1 | 1 | B.1.247 | 0.014925 |
ORF1ab/nsp3 | 246 | Y246N | Tac | Aac | 1 | 1 | B.1.258 | 0.000067 |
ORF1ab/nsp3 | 246 | Y246del | TAC | --- | 1 | 1 | B.1.258.17 | 0.000104 |
ORF1ab/nsp3 | 246 | Y246N | Tac | Aac | 1 | 1 | B.1.332 | 0.003497 |
ORF1ab/nsp3 | 246 | Y246N | Tac | Aac | 1 | 1 | B.1.351 | 0.00003 |
ORF1ab/nsp3 | 246 | Y246C | tAc | tGc | 1 | 1 | B.1.351 | 0.00003 |
ORF1ab/nsp3 | 246 | Y246H | Tac | Cac | 1 | 1 | B.1.36 | 0.000146 |
ORF1ab/nsp3 | 246 | Y246H | Tac | Cac | 1 | 1 | B.1.36.16 | 0.001425 |
ORF1ab/nsp3 | 246 | Y246C | tAc | tGc | 1 | 1 | B.1.36.29 | 0.000517 |
ORF1ab/nsp3 | 246 | Y246Y | taC | taT | 1 | 1 | B.1.36.29 | 0.000517 |
ORF1ab/nsp3 | 246 | Y246Y | taC | taT | 1 | 1 | B.1.367 | 0.000792 |
ORF1ab/nsp3 | 246 | Y246Y | taC | taT | 1 | 1 | B.1.369 | 0.000285 |
ORF1ab/nsp3 | 246 | Y246Y | taC | taT | 1 | 1 | B.1.396 | 0.000706 |
ORF1ab/nsp3 | 246 | Y246Y | taC | taT | 1 | 1 | B.1.400.1 | 0.015152 |
ORF1ab/nsp3 | 246 | Y246Y | taC | taT | 1 | 1 | B.1.429 | 0.000024 |
ORF1ab/nsp3 | 246 | Y246H | Tac | Cac | 1 | 1 | B.1.429 | 0.000024 |
ORF1ab/nsp3 | 246 | Y246del | TAC | --- | 1 | 1 | B.1.429 | 0.000024 |
ORF1ab/nsp3 | 246 | Y246X | taC | taA | 1 | 1 | B.1.466.2 | 0.000391 |
ORF1ab/nsp3 | 246 | Y246C | tAc | tGc | 1 | 1 | B.1.474 | 0.001901 |
ORF1ab/nsp3 | 246 | Y246H | Tac | Cac | 1 | 1 | B.1.499 | 0.00105 |
ORF1ab/nsp3 | 246 | Y246C | tAc | tGc | 1 | 1 | B.1.525 | 0.000113 |
ORF1ab/nsp3 | 246 | Y246N | Tac | Aac | 1 | 1 | B.1.525 | 0.000113 |
ORF1ab/nsp3 | 246 | Y246Y | taC | taT | 1 | 1 | B.1.537 | 0.02 |
ORF1ab/nsp3 | 246 | Y246Y | taC | taT | 1 | 1 | B.1.560 | 0.00463 |
ORF1ab/nsp3 | 246 | Y246H | Tac | Cac | 1 | 1 | B.1.564 | 0.000426 |
ORF1ab/nsp3 | 246 | Y246X | taC | taA | 1 | 1 | B.1.569 | 0.014493 |
ORF1ab/nsp3 | 246 | Y246C | tAc | tGc | 1 | 1 | B.1.576 | 0.000907 |
ORF1ab/nsp3 | 246 | Y246C | tAc | tGc | 1 | 1 | B.1.588 | 0.00091 |
ORF1ab/nsp3 | 246 | Y246C | tAc | tGc | 1 | 1 | B.1.596 | 0.000087 |
ORF1ab/nsp3 | 246 | Y246H | Tac | Cac | 1 | 1 | B.1.596 | 0.000087 |
ORF1ab/nsp3 | 246 | Y246del | TAC | --- | 1 | 1 | B.1.617.2 | 0.000004 |
ORF1ab/nsp3 | 246 | Y246C | tAc | tGc | 1 | 1 | B.1.618 | 0.004032 |
ORF1ab/nsp3 | 246 | Y246C | tAc | tGc | 1 | 1 | B.1.621 | 0.000089 |
ORF1ab/nsp3 | 246 | Y246Y | taC | taT | 1 | 1 | B.1.621 | 0.000089 |
ORF1ab/nsp3 | 246 | Y246del | TAC | --- | 1 | 1 | B.1.630 | 0.005236 |
ORF1ab/nsp3 | 246 | Y246C | tAc | tGc | 1 | 1 | B.40 | 0.000364 |
ORF1ab/nsp3 | 246 | Y246del | TAC | --- | 1 | 1 | B.42 | 0.033333 |
ORF1ab/nsp3 | 246 | Y246Y | taC | taT | 1 | 1 | B.61 | 0.005747 |
ORF1ab/nsp3 | 246 | Y246del | TAC | --- | 1 | 1 | C.17 | 0.055556 |
ORF1ab/nsp3 | 246 | Y246Y | taC | taT | 1 | 1 | C.35 | 0.000774 |
ORF1ab/nsp3 | 246 | Y246C | tAc | tGc | 1 | 1 | C.37 | 0.000116 |
ORF1ab/nsp3 | 246 | Y246C | tAc | tGc | 1 | 1 | D.2 | 0.000075 |
ORF1ab/nsp3 | 246 | Y246Y | taC | taT | 1 | 1 | D.2 | 0.000075 |
ORF1ab/nsp3 | 246 | Y246Y | taC | taT | 1 | 1 | D.5 | 0.004975 |
ORF1ab/nsp3 | 246 | Y246del | TAC | --- | 1 | 1 | P.1 | 0.000016 |
ORF1ab/nsp3 | 246 | Y246H | Tac | Cac | 1 | 1 | P.1 | 0.000016 |
ORF1ab/nsp3 | 246 | Y246Y | taC | taT | 1 | 1 | P.1.14 | 0.000048 |
ORF1ab/nsp3 | 246 | Y246C | tAc | tGc | 1 | 1 | P.1.17 | 0.000162 |
ORF1ab/nsp3 | 246 | Y246Y | taC | taT | 1 | 1 | P.1.7 | 0.000319 |
ORF1ab/nsp3 | 246 | Y246del | TAC | --- | 1 | 1 | Q.8 | 0.000165 |
ORF1ab/nsp3 | 246 | Y246del | TAC | --- | 1 | 1 | R.1 | 0.00009 |
CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk
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