CoV-GLUE | Mutations | Mutation
Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):
ORF | CodonNum | Mut | ORF1abMut | MutType | RefCodon | MutCodon | AACount | CodonCount | CodonProp | Genome Position |
ORF1ab/nsp3 | 238 | V238V | V1056V | syn | gtG | gtT | 6496 | 6082 | 0.936268 | 3431-3433 |
Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):
ORF | CodonNum | Mut | RefCodon | MutCodon | CodonCount | AACount | Lineage | LineageCodonProp |
ORF1ab/nsp3 | 238 | V238V | gtG | gtT | 6082 | 6496 | All | 0.001163 |
ORF1ab/nsp3 | 238 | V238V | gtG | gtT | 3500 | 3500 | AY.39 | 0.08649 |
ORF1ab/nsp3 | 238 | V238V | gtG | gtT | 1372 | 1384 | B.1.617.2 | 0.005166 |
ORF1ab/nsp3 | 238 | V238V | gtG | gtT | 108 | 214 | B.1.1.7 | 0.000097 |
ORF1ab/nsp3 | 238 | V238V | gtG | gtT | 152 | 163 | AY.4 | 0.000237 |
ORF1ab/nsp3 | 238 | V238V | gtG | gtT | 159 | 160 | AY.35 | 0.037054 |
ORF1ab/nsp3 | 238 | V238V | gtG | gtT | 14 | 118 | P.1 | 0.000221 |
ORF1ab/nsp3 | 238 | V238V | gtG | gtT | 116 | 116 | AY.119 | 0.004096 |
ORF1ab/nsp3 | 238 | V238V | gtG | gtT | 35 | 71 | AY.25 | 0.000211 |
ORF1ab/nsp3 | 238 | V238V | gtG | gtT | 46 | 47 | AY.44 | 0.00028 |
ORF1ab/nsp3 | 238 | V238V | gtG | gtT | 41 | 41 | AY.100 | 0.001886 |
ORF1ab/nsp3 | 238 | V238V | gtG | gtT | 41 | 41 | AY.121 | 0.005548 |
ORF1ab/nsp3 | 238 | V238V | gtG | gtT | 40 | 41 | AY.43 | 0.000177 |
ORF1ab/nsp3 | 238 | V238V | gtG | gtT | 28 | 31 | AY.3 | 0.000278 |
ORF1ab/nsp3 | 238 | V238V | gtG | gtT | 15 | 23 | AY.23 | 0.001046 |
ORF1ab/nsp3 | 238 | V238V | gtG | gtT | 23 | 23 | B.1.36.22 | 0.027778 |
ORF1ab/nsp3 | 238 | V238V | gtG | gtT | 22 | 22 | AY.48 | 0.010233 |
ORF1ab/nsp3 | 238 | V238V | gtG | gtT | 15 | 21 | B.1.1 | 0.000272 |
ORF1ab/nsp3 | 238 | V238V | gtG | gtT | 18 | 18 | AY.16.1 | 0.008459 |
ORF1ab/nsp3 | 238 | V238V | gtG | gtT | 14 | 16 | AY.39.1 | 0.000555 |
ORF1ab/nsp3 | 238 | V238V | gtG | gtT | 15 | 16 | B.1.177 | 0.000198 |
ORF1ab/nsp3 | 238 | V238V | gtG | gtT | 14 | 15 | AY.103 | 0.000087 |
ORF1ab/nsp3 | 238 | V238V | gtG | gtT | 8 | 15 | B.1 | 0.000073 |
ORF1ab/nsp3 | 238 | V238V | gtG | gtT | 14 | 14 | B.1.177.81 | 0.002651 |
ORF1ab/nsp3 | 238 | V238V | gtG | gtT | 10 | 12 | AY.102 | 0.000265 |
ORF1ab/nsp3 | 238 | V238V | gtG | gtT | 12 | 12 | AY.98 | 0.000948 |
ORF1ab/nsp3 | 238 | V238V | gtG | gtT | 11 | 11 | AY.7.2 | 0.006152 |
ORF1ab/nsp3 | 238 | V238V | gtG | gtT | 11 | 11 | B.1.240 | 0.002371 |
ORF1ab/nsp3 | 238 | V238V | gtG | gtT | 10 | 10 | AY.117 | 0.000845 |
ORF1ab/nsp3 | 238 | V238V | gtG | gtT | 6 | 10 | AY.47 | 0.000187 |
ORF1ab/nsp3 | 238 | V238V | gtG | gtT | 9 | 9 | AY.118 | 0.000564 |
ORF1ab/nsp3 | 238 | V238V | gtG | gtT | 9 | 9 | AY.16 | 0.003417 |
ORF1ab/nsp3 | 238 | V238V | gtG | gtT | 4 | 9 | B.1.2 | 0.000035 |
ORF1ab/nsp3 | 238 | V238V | gtG | gtT | 8 | 8 | B.1.1.525 | 0.043716 |
ORF1ab/nsp3 | 238 | V238V | gtG | gtT | 7 | 7 | AY.53 | 0.002013 |
ORF1ab/nsp3 | 238 | V238V | gtG | gtT | 4 | 7 | B.1.243 | 0.000278 |
ORF1ab/nsp3 | 238 | V238V | gtG | gtT | 7 | 7 | C.37 | 0.000812 |
ORF1ab/nsp3 | 238 | V238V | gtG | gtT | 6 | 6 | B.1.177.55 | 0.013986 |
ORF1ab/nsp3 | 238 | V238V | gtG | gtT | 6 | 6 | B.1.258 | 0.000399 |
ORF1ab/nsp3 | 238 | V238V | gtG | gtT | 3 | 6 | B.1.351 | 0.000089 |
ORF1ab/nsp3 | 238 | V238V | gtG | gtT | 6 | 6 | P.2 | 0.00112 |
ORF1ab/nsp3 | 238 | V238V | gtG | gtT | 5 | 5 | AY.108 | 0.005513 |
ORF1ab/nsp3 | 238 | V238V | gtG | gtT | 5 | 5 | AY.61 | 0.000524 |
ORF1ab/nsp3 | 238 | V238V | gtG | gtT | 5 | 5 | AY.9 | 0.000338 |
ORF1ab/nsp3 | 238 | V238V | gtG | gtT | 2 | 4 | AY.27 | 0.000129 |
ORF1ab/nsp3 | 238 | V238V | gtG | gtT | 4 | 4 | AY.45 | 0.000487 |
ORF1ab/nsp3 | 238 | V238V | gtG | gtT | 4 | 4 | AY.46 | 0.000416 |
ORF1ab/nsp3 | 238 | V238V | gtG | gtT | 4 | 4 | AY.9.2 | 0.000147 |
ORF1ab/nsp3 | 238 | V238V | gtG | gtT | 4 | 4 | B | 0.000511 |
ORF1ab/nsp3 | 238 | V238V | gtG | gtT | 4 | 4 | B.1.349 | 0.002859 |
ORF1ab/nsp3 | 238 | V238V | gtG | gtT | 4 | 4 | B.1.429 | 0.000094 |
ORF1ab/nsp3 | 238 | V238V | gtG | gtT | 4 | 4 | B.1.617.1 | 0.000516 |
ORF1ab/nsp3 | 238 | V238V | gtG | gtT | 3 | 3 | AY.20 | 0.000117 |
ORF1ab/nsp3 | 238 | V238V | gtG | gtT | 2 | 3 | AY.4.2 | 0.000043 |
ORF1ab/nsp3 | 238 | V238V | gtG | gtT | 3 | 3 | AY.5.3 | 0.001012 |
ORF1ab/nsp3 | 238 | V238V | gtG | gtT | 3 | 3 | AY.68 | 0.000821 |
ORF1ab/nsp3 | 238 | V238V | gtG | gtT | 3 | 3 | B.1.1.39 | 0.001529 |
ORF1ab/nsp3 | 238 | V238V | gtG | gtT | 3 | 3 | B.1.1.434 | 0.001046 |
ORF1ab/nsp3 | 238 | V238V | gtG | gtT | 2 | 3 | B.1.596 | 0.000174 |
ORF1ab/nsp3 | 238 | V238V | gtG | gtT | 3 | 3 | B.1.621 | 0.000266 |
ORF1ab/nsp3 | 238 | V238V | gtG | gtT | 3 | 3 | B.1.637 | 0.000219 |
ORF1ab/nsp3 | 238 | V238V | gtG | gtT | 1 | 2 | A | 0.000387 |
ORF1ab/nsp3 | 238 | V238V | gtG | gtT | 2 | 2 | AY.110 | 0.000225 |
ORF1ab/nsp3 | 238 | V238V | gtG | gtT | 2 | 2 | AY.19 | 0.002281 |
ORF1ab/nsp3 | 238 | V238V | gtG | gtT | 1 | 2 | AY.29 | 0.000016 |
ORF1ab/nsp3 | 238 | V238V | gtG | gtT | 2 | 2 | AY.39.1.1 | 0.001449 |
ORF1ab/nsp3 | 238 | V238V | gtG | gtT | 2 | 2 | AY.4.5 | 0.000215 |
ORF1ab/nsp3 | 238 | V238V | gtG | gtT | 2 | 2 | AY.42 | 0.00008 |
ORF1ab/nsp3 | 238 | V238V | gtG | gtT | 2 | 2 | AY.5 | 0.000041 |
ORF1ab/nsp3 | 238 | V238V | gtG | gtT | 2 | 2 | AY.66 | 0.002139 |
ORF1ab/nsp3 | 238 | V238V | gtG | gtT | 2 | 2 | AY.75 | 0.000112 |
ORF1ab/nsp3 | 238 | V238V | gtG | gtT | 2 | 2 | AY.77 | 0.002255 |
ORF1ab/nsp3 | 238 | V238V | gtG | gtT | 2 | 2 | AY.84 | 0.000875 |
ORF1ab/nsp3 | 238 | V238V | gtG | gtT | 2 | 2 | B.1.1.1 | 0.000653 |
ORF1ab/nsp3 | 238 | V238V | gtG | gtT | 2 | 2 | B.1.1.464 | 0.002946 |
ORF1ab/nsp3 | 238 | V238V | gtG | gtT | 1 | 2 | B.1.160 | 0.000031 |
ORF1ab/nsp3 | 238 | V238V | gtG | gtT | 2 | 2 | B.1.218 | 0.010309 |
ORF1ab/nsp3 | 238 | V238V | gtG | gtT | 2 | 2 | B.1.311 | 0.000549 |
ORF1ab/nsp3 | 238 | V238V | gtG | gtT | 2 | 2 | B.1.427 | 0.000101 |
ORF1ab/nsp3 | 238 | V238V | gtG | gtT | 2 | 2 | C.22 | 0.142857 |
ORF1ab/nsp3 | 238 | V238V | gtG | gtT | 2 | 2 | P.1.10 | 0.000539 |
ORF1ab/nsp3 | 238 | V238V | gtG | gtT | 2 | 2 | P.1.9 | 0.009615 |
ORF1ab/nsp3 | 238 | V238V | gtG | gtT | 1 | 1 | AY.109 | 0.00074 |
ORF1ab/nsp3 | 238 | V238V | gtG | gtT | 1 | 1 | AY.116 | 0.000287 |
ORF1ab/nsp3 | 238 | V238V | gtG | gtT | 1 | 1 | AY.12 | 0.000316 |
ORF1ab/nsp3 | 238 | V238V | gtG | gtT | 1 | 1 | AY.120 | 0.000037 |
ORF1ab/nsp3 | 238 | V238V | gtG | gtT | 1 | 1 | AY.26 | 0.000028 |
ORF1ab/nsp3 | 238 | V238V | gtG | gtT | 1 | 1 | AY.33 | 0.000067 |
ORF1ab/nsp3 | 238 | V238V | gtG | gtT | 1 | 1 | AY.34 | 0.000097 |
ORF1ab/nsp3 | 238 | V238V | gtG | gtT | 1 | 1 | AY.36 | 0.000148 |
ORF1ab/nsp3 | 238 | V238V | gtG | gtT | 1 | 1 | AY.4.4 | 0.000409 |
ORF1ab/nsp3 | 238 | V238V | gtG | gtT | 1 | 1 | AY.46.5 | 0.000198 |
ORF1ab/nsp3 | 238 | V238V | gtG | gtT | 1 | 1 | AY.46.6 | 0.000072 |
ORF1ab/nsp3 | 238 | V238V | gtG | gtT | 1 | 1 | AY.56 | 0.001605 |
ORF1ab/nsp3 | 238 | V238V | gtG | gtT | 1 | 1 | AY.57 | 0.000656 |
ORF1ab/nsp3 | 238 | V238V | gtG | gtT | 1 | 1 | AY.6 | 0.000041 |
ORF1ab/nsp3 | 238 | V238V | gtG | gtT | 1 | 1 | AY.67 | 0.000464 |
ORF1ab/nsp3 | 238 | V238V | gtG | gtT | 1 | 1 | AY.74 | 0.000116 |
ORF1ab/nsp3 | 238 | V238V | gtG | gtT | 1 | 1 | AY.92 | 0.000287 |
ORF1ab/nsp3 | 238 | V238V | gtG | gtT | 1 | 1 | AY.93 | 0.000273 |
ORF1ab/nsp3 | 238 | V238V | gtG | gtT | 1 | 1 | AY.96 | 0.002075 |
ORF1ab/nsp3 | 238 | V238V | gtG | gtT | 1 | 1 | AY.98.1 | 0.000048 |
ORF1ab/nsp3 | 238 | V238V | gtG | gtT | 1 | 1 | B.1.1.157 | 0.000913 |
ORF1ab/nsp3 | 238 | V238V | gtG | gtT | 1 | 1 | B.1.1.372 | 0.000689 |
ORF1ab/nsp3 | 238 | V238V | gtG | gtT | 1 | 1 | B.1.177.53 | 0.002392 |
ORF1ab/nsp3 | 238 | V238V | gtG | gtT | 1 | 1 | B.1.201 | 0.005682 |
ORF1ab/nsp3 | 238 | V238V | gtG | gtT | 1 | 1 | B.1.258.17 | 0.000104 |
ORF1ab/nsp3 | 238 | V238V | gtG | gtT | 1 | 1 | B.1.260 | 0.003344 |
ORF1ab/nsp3 | 238 | V238V | gtG | gtT | 1 | 1 | B.1.265 | 0.001271 |
ORF1ab/nsp3 | 238 | V238V | gtG | gtT | 1 | 1 | B.1.351.3 | 0.000876 |
ORF1ab/nsp3 | 238 | V238V | gtG | gtT | 1 | 1 | B.1.367 | 0.000792 |
ORF1ab/nsp3 | 238 | V238V | gtG | gtT | 1 | 1 | B.1.369 | 0.000285 |
ORF1ab/nsp3 | 238 | V238V | gtG | gtT | 1 | 1 | B.1.428 | 0.00102 |
ORF1ab/nsp3 | 238 | V238V | gtG | gtT | 1 | 1 | B.1.551 | 0.00129 |
ORF1ab/nsp3 | 238 | V238V | gtG | gtT | 1 | 1 | B.1.609 | 0.000479 |
ORF1ab/nsp3 | 238 | V238V | gtG | gtT | 1 | 1 | Z.1 | 0.00289 |
CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk
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