CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF1ab/nsp3 : CodonNum = 235

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF1ab/nsp3235K235RK1053RnonsynaAaaGa2192180.9954343422-3424
ORF1ab/nsp3235K235RK1053RnonsynaAAaGG21910.004566213422-3424
ORF1ab/nsp3235K235TK1053TnonsynaAaaCa1301290.9923083422-3424
ORF1ab/nsp3235K235TK1053TnonsynaAAaCC13010.007692313422-3424
ORF1ab/nsp3235K235EK1053EnonsynAaaGaa10310313422-3424
ORF1ab/nsp3235K235KK1053KsynaaAaaG898913422-3424
ORF1ab/nsp3235K235NK1053NnonsynaaAaaC60550.9166673422-3424
ORF1ab/nsp3235K235NK1053NnonsynaaAaaT6050.08333333422-3424
ORF1ab/nsp3235K235QK1053QnonsynAaaCaa454513422-3424
ORF1ab/nsp3235K235delK1053deldelAAA---212113422-3424
ORF1ab/nsp3235K235IK1053InonsynaAaaTa2213422-3424
ORF1ab/nsp3235K235del1K1053del1delAaa-aa2213422-3424
ORF1ab/nsp3235K235del2K1053del2delAAa--a1113422-3424

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF1ab/nsp3235K235RaAaaGa218219All0.000042
ORF1ab/nsp3235K235RaAAaGG1219All0
ORF1ab/nsp3235K235RaAaaGa136136B.1.466.10.978417
ORF1ab/nsp3235K235TaAaaCa129130All0.000025
ORF1ab/nsp3235K235TaAAaCC1130All0
ORF1ab/nsp3235K235EAaaGaa103103All0.00002
ORF1ab/nsp3235K235TaAaaCa100100B.1.1.70.00009
ORF1ab/nsp3235K235KaaAaaG8989All0.000017
ORF1ab/nsp3235K235NaaAaaC5560All0.000011
ORF1ab/nsp3235K235NaaAaaT560All0.000001
ORF1ab/nsp3235K235EAaaGaa5353B.1.438.10.005685
ORF1ab/nsp3235K235QAaaCaa4545All0.000009
ORF1ab/nsp3235K235RaAaaGa3838B.1.1.70.000034
ORF1ab/nsp3235K235KaaAaaG3232AY.29.10.007056
ORF1ab/nsp3235K235delAAA---2121All0.000004
ORF1ab/nsp3235K235QAaaCaa2020AY.60.000823
ORF1ab/nsp3235K235TaAaaCa1616B.1.617.20.00006
ORF1ab/nsp3235K235EAaaGaa1414B.1.1.70.000013
ORF1ab/nsp3235K235KaaAaaG1414B.1.4930.358974
ORF1ab/nsp3235K235RaAaaGa1010AY.290.000158
ORF1ab/nsp3235K235NaaAaaC1010AY.440.000061
ORF1ab/nsp3235K235EAaaGaa1010AY.46.50.001984
ORF1ab/nsp3235K235KaaAaaG1010B.10.000092
ORF1ab/nsp3235K235NaaAaaC88AY.60.000329
ORF1ab/nsp3235K235QAaaCaa77AY.40.000011
ORF1ab/nsp3235K235EAaaGaa77B.1.617.20.000026
ORF1ab/nsp3235K235RaAaaGa66AY.40.000009
ORF1ab/nsp3235K235NaaAaaC66AY.40.000009
ORF1ab/nsp3235K235KaaAaaG66AY.40.000009
ORF1ab/nsp3235K235RaAaaGa66B.10.000055
ORF1ab/nsp3235K235NaaAaaC56B.1.1.70.000004
ORF1ab/nsp3235K235NaaAaaT16B.1.1.70.000001
ORF1ab/nsp3235K235QAaaCaa55AY.1030.000031
ORF1ab/nsp3235K235RaAaaGa55AY.1030.000031
ORF1ab/nsp3235K235NaaAaaC45B.10.000037
ORF1ab/nsp3235K235NaaAaaT15B.10.000009
ORF1ab/nsp3235K235KaaAaaG55B.1.1.70.000004
ORF1ab/nsp3235K235NaaAaaC55N.50.008834
ORF1ab/nsp3235K235KaaAaaG44AY.390.000099
ORF1ab/nsp3235K235QAaaCaa44B.1.1.70.000004
ORF1ab/nsp3235K235KaaAaaG44B.1.617.20.000015
ORF1ab/nsp3235K235RaAaaGa33AY.320.001597
ORF1ab/nsp3235K235EAaaGaa33AY.40.000005
ORF1ab/nsp3235K235delAAA---33B.10.000027
ORF1ab/nsp3235K235delAAA---33B.1.1.330.001263
ORF1ab/nsp3235K235RaAaaGa33B.1.1770.00004
ORF1ab/nsp3235K235KaaAaaG33C.370.000348
ORF1ab/nsp3235K235del1Aaa-aa22All0
ORF1ab/nsp3235K235IaAaaTa22All0
ORF1ab/nsp3235K235NaaAaaC22AY.1020.000053
ORF1ab/nsp3235K235EAaaGaa22AY.1030.000012
ORF1ab/nsp3235K235NaaAaaC22AY.1110.000366
ORF1ab/nsp3235K235QAaaCaa22AY.1130.000285
ORF1ab/nsp3235K235TaAaaCa22AY.120.000632
ORF1ab/nsp3235K235RaAaaGa22AY.260.000057
ORF1ab/nsp3235K235NaaAaaC22AY.30.00002
ORF1ab/nsp3235K235RaAaaGa22AY.3.10.000171
ORF1ab/nsp3235K235NaaAaaC22AY.390.000049
ORF1ab/nsp3235K235KaaAaaG22AY.440.000012
ORF1ab/nsp3235K235QAaaCaa22AY.50.000041
ORF1ab/nsp3235K235TaAaaCa12AY.850.000427
ORF1ab/nsp3235K235TaAAaCC12AY.850.000427
ORF1ab/nsp3235K235delAAA---22B.1.10.000036
ORF1ab/nsp3235K235TaAaaCa22B.1.1.340.026316
ORF1ab/nsp3235K235delAAA---22B.1.1.3480.001592
ORF1ab/nsp3235K235EAaaGaa22B.1.360.000292
ORF1ab/nsp3235K235RaAaaGa22B.1.4600.035714
ORF1ab/nsp3235K235NaaAaaC22C.90.060606
ORF1ab/nsp3235K235delAAA---22N.60.014184
ORF1ab/nsp3235K235QAaaCaa22P.1.120.000968
ORF1ab/nsp3235K235del2AAa--a11All0
ORF1ab/nsp3235K235KaaAaaG11AY.1030.000006
ORF1ab/nsp3235K235delAAA---11AY.110.001339
ORF1ab/nsp3235K235delAAA---11AY.1200.000037
ORF1ab/nsp3235K235KaaAaaG11AY.140.000088
ORF1ab/nsp3235K235EAaaGaa11AY.250.000006
ORF1ab/nsp3235K235NaaAaaC11AY.29.10.000221
ORF1ab/nsp3235K235EAaaGaa11AY.30.00001
ORF1ab/nsp3235K235TaAaaCa11AY.30.00001
ORF1ab/nsp3235K235NaaAaaT11AY.34.10.00051
ORF1ab/nsp3235K235EAaaGaa11AY.350.000233
ORF1ab/nsp3235K235QAaaCaa11AY.390.000025
ORF1ab/nsp3235K235TaAaaCa11AY.430.000004
ORF1ab/nsp3235K235TaAaaCa11AY.440.000006
ORF1ab/nsp3235K235EAaaGaa11AY.46.60.000072
ORF1ab/nsp3235K235EAaaGaa11AY.480.000465
ORF1ab/nsp3235K235TaAaaCa11AY.510.000909
ORF1ab/nsp3235K235RaAaaGa11AY.550.000917
ORF1ab/nsp3235K235TaAaaCa11AY.570.000656
ORF1ab/nsp3235K235NaaAaaC11AY.610.000105
ORF1ab/nsp3235K235NaaAaaC11AY.850.000427
ORF1ab/nsp3235K235del2AAa--a11AY.90.000068
ORF1ab/nsp3235K235EAaaGaa11AY.980.000079
ORF1ab/nsp3235K235EAaaGaa11B.10.000009
ORF1ab/nsp3235K235IaAaaTa11B.10.000009
ORF1ab/nsp3235K235RaAAaGG11B.1.1.1390.022727
ORF1ab/nsp3235K235KaaAaaG11B.1.1.3260.001761
ORF1ab/nsp3235K235EAaaGaa11B.1.1.4640.001473
ORF1ab/nsp3235K235NaaAaaC11B.1.1.5190.00004
ORF1ab/nsp3235K235RaAaaGa11B.1.1.5260.003546
ORF1ab/nsp3235K235delAAA---11B.1.1.70.000001
ORF1ab/nsp3235K235del1Aaa-aa11B.1.1600.000031
ORF1ab/nsp3235K235KaaAaaG11B.1.1770.000013
ORF1ab/nsp3235K235KaaAaaG11B.1.177.450.000381
ORF1ab/nsp3235K235RaAaaGa11B.1.177.760.002494
ORF1ab/nsp3235K235EAaaGaa11B.1.177.810.000189
ORF1ab/nsp3235K235TaAaaCa11B.1.221.40.004167
ORF1ab/nsp3235K235KaaAaaG11B.1.2340.000132
ORF1ab/nsp3235K235EAaaGaa11B.1.2410.000812
ORF1ab/nsp3235K235KaaAaaG11B.1.2430.00007
ORF1ab/nsp3235K235TaAaaCa11B.1.258.170.000104
ORF1ab/nsp3235K235TaAaaCa11B.1.360.000146
ORF1ab/nsp3235K235NaaAaaC11B.1.3690.000285
ORF1ab/nsp3235K235NaaAaaC11B.1.3890.001002
ORF1ab/nsp3235K235NaaAaaT11B.1.4290.000024
ORF1ab/nsp3235K235delAAA---11B.1.4290.000024
ORF1ab/nsp3235K235RaAaaGa11B.1.4620.007246
ORF1ab/nsp3235K235NaaAaaT11B.1.4790.038462
ORF1ab/nsp3235K235delAAA---11B.1.5250.000113
ORF1ab/nsp3235K235KaaAaaG11B.1.5600.00463
ORF1ab/nsp3235K235del1Aaa-aa11B.1.617.20.000004
ORF1ab/nsp3235K235QAaaCaa11B.1.617.20.000004
ORF1ab/nsp3235K235EAaaGaa11B.1.6210.000089
ORF1ab/nsp3235K235NaaAaaC11B.1.6280.000352
ORF1ab/nsp3235K235delAAA---11B.1.6300.005236
ORF1ab/nsp3235K235delAAA---11C.170.055556
ORF1ab/nsp3235K235RaAaaGa11P.10.000016
ORF1ab/nsp3235K235EAaaGaa11P.10.000016
ORF1ab/nsp3235K235delAAA---11P.10.000016
ORF1ab/nsp3235K235QAaaCaa11P.10.000016
ORF1ab/nsp3235K235IaAaaTa11P.1.140.000048
ORF1ab/nsp3235K235KaaAaaG11Q.40.000455
ORF1ab/nsp3235K235delAAA---11R.10.00009