CoV-GLUE | Mutations | Mutation
Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):
ORF | CodonNum | Mut | ORF1abMut | MutType | RefCodon | MutCodon | AACount | CodonCount | CodonProp | Genome Position |
ORF1ab/nsp3 | 231 | A231V | A1049V | nonsyn | gCt | gTt | 8184 | 8183 | 0.999878 | 3410-3412 |
ORF1ab/nsp3 | 231 | A231V | A1049V | nonsyn | gCT | gTA | 8184 | 1 | 0.00012219 | 3410-3412 |
ORF1ab/nsp3 | 231 | A231S | A1049S | nonsyn | Gct | Tct | 400 | 399 | 0.9975 | 3410-3412 |
ORF1ab/nsp3 | 231 | A231S | A1049S | nonsyn | GcT | TcC | 400 | 1 | 0.0025 | 3410-3412 |
ORF1ab/nsp3 | 231 | A231A | A1049A | syn | gcT | gcA | 243 | 144 | 0.592593 | 3410-3412 |
ORF1ab/nsp3 | 231 | A231A | A1049A | syn | gcT | gcC | 243 | 97 | 0.399177 | 3410-3412 |
ORF1ab/nsp3 | 231 | A231A | A1049A | syn | gcT | gcG | 243 | 2 | 0.00823045 | 3410-3412 |
ORF1ab/nsp3 | 231 | A231T | A1049T | nonsyn | Gct | Act | 83 | 83 | 1 | 3410-3412 |
ORF1ab/nsp3 | 231 | A231del | A1049del | del | GCT | --- | 24 | 24 | 1 | 3410-3412 |
ORF1ab/nsp3 | 231 | A231P | A1049P | nonsyn | Gct | Cct | 4 | 4 | 1 | 3410-3412 |
ORF1ab/nsp3 | 231 | A231del1 | A1049del1 | del | gcT | gc- | 4 | 2 | 0.5 | 3410-3412 |
ORF1ab/nsp3 | 231 | A231del1 | A1049del1 | del | Gct | -ct | 4 | 1 | 0.25 | 3410-3412 |
ORF1ab/nsp3 | 231 | A231del1 | A1049del1 | del | gCt | g-t | 4 | 1 | 0.25 | 3410-3412 |
ORF1ab/nsp3 | 231 | A231G | A1049G | nonsyn | gCt | gGt | 3 | 3 | 1 | 3410-3412 |
ORF1ab/nsp3 | 231 | A231D | A1049D | nonsyn | gCt | gAt | 3 | 3 | 1 | 3410-3412 |
ORF1ab/nsp3 | 231 | A231F | A1049F | nonsyn | GCt | TTt | 1 | 1 | 1 | 3410-3412 |
Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):
ORF | CodonNum | Mut | RefCodon | MutCodon | CodonCount | AACount | Lineage | LineageCodonProp |
ORF1ab/nsp3 | 231 | A231V | gCt | gTt | 8183 | 8184 | All | 0.001565 |
ORF1ab/nsp3 | 231 | A231V | gCT | gTA | 1 | 8184 | All | 0 |
ORF1ab/nsp3 | 231 | A231V | gCt | gTt | 1504 | 1504 | B.1.1.7 | 0.001346 |
ORF1ab/nsp3 | 231 | A231V | gCt | gTt | 984 | 984 | B.1.1.316 | 0.910268 |
ORF1ab/nsp3 | 231 | A231V | gCt | gTt | 711 | 711 | AY.4 | 0.001107 |
ORF1ab/nsp3 | 231 | A231V | gCt | gTt | 696 | 696 | B.1.595 | 0.181628 |
ORF1ab/nsp3 | 231 | A231V | gCt | gTt | 455 | 455 | B.1.617.2 | 0.001713 |
ORF1ab/nsp3 | 231 | A231S | Gct | Tct | 399 | 400 | All | 0.000076 |
ORF1ab/nsp3 | 231 | A231S | GcT | TcC | 1 | 400 | All | 0 |
ORF1ab/nsp3 | 231 | A231V | gCt | gTt | 258 | 258 | B.1 | 0.002363 |
ORF1ab/nsp3 | 231 | A231A | gcT | gcA | 144 | 243 | All | 0.000028 |
ORF1ab/nsp3 | 231 | A231A | gcT | gcC | 97 | 243 | All | 0.000019 |
ORF1ab/nsp3 | 231 | A231A | gcT | gcG | 2 | 243 | All | 0 |
ORF1ab/nsp3 | 231 | A231V | gCt | gTt | 216 | 216 | AY.85 | 0.092268 |
ORF1ab/nsp3 | 231 | A231V | gCt | gTt | 191 | 191 | B.1.2 | 0.001682 |
ORF1ab/nsp3 | 231 | A231S | Gct | Tct | 173 | 173 | AY.3 | 0.001721 |
ORF1ab/nsp3 | 231 | A231V | gCt | gTt | 148 | 148 | AY.103 | 0.000919 |
ORF1ab/nsp3 | 231 | A231V | gCt | gTt | 146 | 146 | B.1.1 | 0.002649 |
ORF1ab/nsp3 | 231 | A231V | gCt | gTt | 130 | 130 | B.1.1.225 | 0.935252 |
ORF1ab/nsp3 | 231 | A231V | gCt | gTt | 123 | 123 | B.1.526 | 0.002891 |
ORF1ab/nsp3 | 231 | A231V | gCt | gTt | 118 | 118 | P.1 | 0.001859 |
ORF1ab/nsp3 | 231 | A231V | gCt | gTt | 115 | 115 | B.1.177 | 0.001514 |
ORF1ab/nsp3 | 231 | A231V | gCt | gTt | 107 | 107 | AY.14 | 0.009417 |
ORF1ab/nsp3 | 231 | A231V | gCt | gTt | 99 | 99 | B.1.517 | 0.042272 |
ORF1ab/nsp3 | 231 | A231V | gCt | gTt | 94 | 94 | B.1.258 | 0.006255 |
ORF1ab/nsp3 | 231 | A231V | gCt | gTt | 91 | 91 | AY.102 | 0.002413 |
ORF1ab/nsp3 | 231 | A231V | gCt | gTt | 86 | 86 | B.1.234 | 0.011347 |
ORF1ab/nsp3 | 231 | A231T | Gct | Act | 83 | 83 | All | 0.000016 |
ORF1ab/nsp3 | 231 | A231V | gCt | gTt | 79 | 79 | AY.43 | 0.00035 |
ORF1ab/nsp3 | 231 | A231V | gCt | gTt | 75 | 75 | AY.5 | 0.001549 |
ORF1ab/nsp3 | 231 | A231V | gCt | gTt | 70 | 70 | AY.44 | 0.000426 |
ORF1ab/nsp3 | 231 | A231V | gCt | gTt | 69 | 69 | R.2 | 1 |
ORF1ab/nsp3 | 231 | A231V | gCt | gTt | 65 | 65 | AY.25 | 0.000391 |
ORF1ab/nsp3 | 231 | A231V | gCt | gTt | 64 | 64 | AY.23 | 0.004464 |
ORF1ab/nsp3 | 231 | A231A | gcT | gcA | 59 | 59 | B.1.2 | 0.00052 |
ORF1ab/nsp3 | 231 | A231V | gCt | gTt | 57 | 57 | B.1.240 | 0.012287 |
ORF1ab/nsp3 | 231 | A231V | gCt | gTt | 57 | 57 | B.1.256 | 0.982759 |
ORF1ab/nsp3 | 231 | A231V | gCt | gTt | 42 | 42 | AY.26 | 0.001189 |
ORF1ab/nsp3 | 231 | A231V | gCt | gTt | 37 | 37 | AY.3 | 0.000368 |
ORF1ab/nsp3 | 231 | A231V | gCt | gTt | 37 | 37 | AY.33 | 0.002471 |
ORF1ab/nsp3 | 231 | A231V | gCt | gTt | 36 | 36 | AY.39 | 0.00089 |
ORF1ab/nsp3 | 231 | A231V | gCt | gTt | 35 | 35 | B.1.160 | 0.001092 |
ORF1ab/nsp3 | 231 | A231V | gCt | gTt | 35 | 35 | B.1.243 | 0.002435 |
ORF1ab/nsp3 | 231 | A231V | gCt | gTt | 33 | 33 | B.1.351 | 0.000981 |
ORF1ab/nsp3 | 231 | A231V | gCt | gTt | 33 | 33 | B.1.429 | 0.000776 |
ORF1ab/nsp3 | 231 | A231V | gCt | gTt | 32 | 32 | AY.100 | 0.001472 |
ORF1ab/nsp3 | 231 | A231S | Gct | Tct | 32 | 32 | B.1.617.2 | 0.00012 |
ORF1ab/nsp3 | 231 | A231V | gCt | gTt | 31 | 31 | B.1.177.4 | 0.006543 |
ORF1ab/nsp3 | 231 | A231V | gCt | gTt | 29 | 29 | B.1.177.81 | 0.00549 |
ORF1ab/nsp3 | 231 | A231V | gCt | gTt | 28 | 28 | AY.98 | 0.002212 |
ORF1ab/nsp3 | 231 | A231V | gCt | gTt | 27 | 27 | AY.47 | 0.00084 |
ORF1ab/nsp3 | 231 | A231del | GCT | --- | 24 | 24 | All | 0.000005 |
ORF1ab/nsp3 | 231 | A231V | gCt | gTt | 24 | 24 | B.1.378 | 0.164384 |
ORF1ab/nsp3 | 231 | A231V | gCt | gTt | 22 | 22 | AY.20 | 0.000855 |
ORF1ab/nsp3 | 231 | A231V | gCt | gTt | 21 | 21 | AY.113 | 0.00299 |
ORF1ab/nsp3 | 231 | A231V | gCt | gTt | 21 | 21 | AY.4.2 | 0.000455 |
ORF1ab/nsp3 | 231 | A231V | gCt | gTt | 20 | 20 | AY.29 | 0.000315 |
ORF1ab/nsp3 | 231 | A231T | Gct | Act | 20 | 20 | B.1.1.7 | 0.000018 |
ORF1ab/nsp3 | 231 | A231V | gCt | gTt | 20 | 20 | B.1.210 | 0.042644 |
ORF1ab/nsp3 | 231 | A231V | gCt | gTt | 20 | 20 | B.1.596 | 0.001743 |
ORF1ab/nsp3 | 231 | A231V | gCt | gTt | 20 | 20 | B.1.609 | 0.009588 |
ORF1ab/nsp3 | 231 | A231V | gCt | gTt | 19 | 19 | AY.119 | 0.000671 |
ORF1ab/nsp3 | 231 | A231V | gCt | gTt | 19 | 19 | AY.4.5 | 0.002042 |
ORF1ab/nsp3 | 231 | A231V | gCt | gTt | 19 | 19 | B.1.409 | 0.014844 |
ORF1ab/nsp3 | 231 | A231V | gCt | gTt | 19 | 19 | C.36.3 | 0.010777 |
ORF1ab/nsp3 | 231 | A231V | gCt | gTt | 17 | 17 | B.1.177.54 | 0.010309 |
ORF1ab/nsp3 | 231 | A231V | gCt | gTt | 17 | 17 | B.1.221 | 0.001208 |
ORF1ab/nsp3 | 231 | A231S | Gct | Tct | 16 | 16 | B.1 | 0.000147 |
ORF1ab/nsp3 | 231 | A231A | gcT | gcA | 16 | 16 | B.1.221 | 0.001137 |
ORF1ab/nsp3 | 231 | A231S | Gct | Tct | 16 | 16 | B.1.564.1 | 0.025237 |
ORF1ab/nsp3 | 231 | A231V | gCt | gTt | 16 | 16 | P.1.7 | 0.005109 |
ORF1ab/nsp3 | 231 | A231S | Gct | Tct | 15 | 15 | AY.39 | 0.000371 |
ORF1ab/nsp3 | 231 | A231S | Gct | Tct | 15 | 15 | AY.4 | 0.000023 |
ORF1ab/nsp3 | 231 | A231V | gCt | gTt | 15 | 15 | AY.75 | 0.00084 |
ORF1ab/nsp3 | 231 | A231V | gCt | gTt | 15 | 15 | AY.98.1 | 0.000726 |
ORF1ab/nsp3 | 231 | A231A | gcT | gcA | 8 | 15 | B.1.1.7 | 0.000007 |
ORF1ab/nsp3 | 231 | A231A | gcT | gcC | 7 | 15 | B.1.1.7 | 0.000006 |
ORF1ab/nsp3 | 231 | A231V | gCt | gTt | 14 | 14 | AY.45 | 0.001704 |
ORF1ab/nsp3 | 231 | A231V | gCt | gTt | 14 | 14 | B.1.1.317 | 0.005764 |
ORF1ab/nsp3 | 231 | A231V | gCt | gTt | 14 | 14 | B.1.1.519 | 0.000556 |
ORF1ab/nsp3 | 231 | A231V | gCt | gTt | 14 | 14 | B.1.427 | 0.000707 |
ORF1ab/nsp3 | 231 | A231V | gCt | gTt | 14 | 14 | P.1.14 | 0.000669 |
ORF1ab/nsp3 | 231 | A231S | Gct | Tct | 13 | 13 | AY.43 | 0.000058 |
ORF1ab/nsp3 | 231 | A231V | gCt | gTt | 13 | 13 | C.37 | 0.001509 |
ORF1ab/nsp3 | 231 | A231V | gCt | gTt | 13 | 13 | D.2 | 0.000976 |
ORF1ab/nsp3 | 231 | A231A | gcT | gcA | 11 | 12 | AY.102 | 0.000292 |
ORF1ab/nsp3 | 231 | A231A | gcT | gcC | 1 | 12 | AY.102 | 0.000027 |
ORF1ab/nsp3 | 231 | A231A | gcT | gcC | 11 | 12 | AY.103 | 0.000068 |
ORF1ab/nsp3 | 231 | A231A | gcT | gcA | 1 | 12 | AY.103 | 0.000006 |
ORF1ab/nsp3 | 231 | A231V | gCt | gTt | 12 | 12 | AY.106 | 0.004019 |
ORF1ab/nsp3 | 231 | A231V | gCt | gTt | 12 | 12 | AY.7.1 | 0.001352 |
ORF1ab/nsp3 | 231 | A231A | gcT | gcA | 7 | 12 | B.1.617.2 | 0.000026 |
ORF1ab/nsp3 | 231 | A231A | gcT | gcC | 5 | 12 | B.1.617.2 | 0.000019 |
ORF1ab/nsp3 | 231 | A231V | gCt | gTt | 12 | 12 | Q.8 | 0.001979 |
ORF1ab/nsp3 | 231 | A231S | Gct | Tct | 11 | 11 | AY.103 | 0.000068 |
ORF1ab/nsp3 | 231 | A231S | Gct | Tct | 11 | 11 | B.1.1.519 | 0.000437 |
ORF1ab/nsp3 | 231 | A231V | gCt | gTt | 10 | 10 | AD.2 | 0.00219 |
ORF1ab/nsp3 | 231 | A231V | gCt | gTt | 10 | 10 | AY.118 | 0.000626 |
ORF1ab/nsp3 | 231 | A231T | Gct | Act | 10 | 10 | AY.20 | 0.000389 |
ORF1ab/nsp3 | 231 | A231A | gcT | gcC | 8 | 10 | AY.4 | 0.000012 |
ORF1ab/nsp3 | 231 | A231A | gcT | gcA | 2 | 10 | AY.4 | 0.000003 |
ORF1ab/nsp3 | 231 | A231V | gCt | gTt | 10 | 10 | B.1.1.435 | 0.344828 |
ORF1ab/nsp3 | 231 | A231A | gcT | gcC | 10 | 10 | B.1.429 | 0.000235 |
ORF1ab/nsp3 | 231 | A231S | Gct | Tct | 9 | 9 | AY.113 | 0.001282 |
ORF1ab/nsp3 | 231 | A231V | gCt | gTt | 9 | 9 | AY.120 | 0.000335 |
ORF1ab/nsp3 | 231 | A231V | gCt | gTt | 9 | 9 | AY.41 | 0.002646 |
ORF1ab/nsp3 | 231 | A231A | gcT | gcC | 9 | 9 | AY.44 | 0.000055 |
ORF1ab/nsp3 | 231 | A231V | gCt | gTt | 9 | 9 | AY.9.2 | 0.000331 |
ORF1ab/nsp3 | 231 | A231A | gcT | gcA | 6 | 9 | B.1 | 0.000055 |
ORF1ab/nsp3 | 231 | A231A | gcT | gcC | 2 | 9 | B.1 | 0.000018 |
ORF1ab/nsp3 | 231 | A231A | gcT | gcG | 1 | 9 | B.1 | 0.000009 |
ORF1ab/nsp3 | 231 | A231A | gcT | gcC | 9 | 9 | B.1.1.214 | 0.000499 |
ORF1ab/nsp3 | 231 | A231V | gCt | gTt | 9 | 9 | B.1.1.33 | 0.003788 |
ORF1ab/nsp3 | 231 | A231V | gCt | gTt | 9 | 9 | B.1.236 | 0.01848 |
ORF1ab/nsp3 | 231 | A231A | gcT | gcC | 9 | 9 | B.1.369 | 0.002567 |
ORF1ab/nsp3 | 231 | A231V | gCt | gTt | 9 | 9 | B.1.588 | 0.008189 |
ORF1ab/nsp3 | 231 | A231V | gCt | gTt | 9 | 9 | V.1 | 0.204545 |
ORF1ab/nsp3 | 231 | A231V | gCt | gTt | 8 | 8 | AY.42 | 0.000322 |
ORF1ab/nsp3 | 231 | A231S | Gct | Tct | 8 | 8 | AY.44 | 0.000049 |
ORF1ab/nsp3 | 231 | A231V | gCt | gTt | 8 | 8 | AY.46 | 0.000833 |
ORF1ab/nsp3 | 231 | A231S | Gct | Tct | 8 | 8 | B.1.1.7 | 0.000007 |
ORF1ab/nsp3 | 231 | A231S | Gct | Tct | 7 | 7 | AY.20 | 0.000272 |
ORF1ab/nsp3 | 231 | A231V | gCt | gTt | 7 | 7 | B.1.311 | 0.001922 |
ORF1ab/nsp3 | 231 | A231V | gCt | gTt | 6 | 6 | AY.39.1 | 0.000238 |
ORF1ab/nsp3 | 231 | A231V | gCt | gTt | 6 | 6 | AY.6 | 0.000247 |
ORF1ab/nsp3 | 231 | A231V | gCt | gTt | 6 | 6 | B.1.177.60 | 0.001311 |
ORF1ab/nsp3 | 231 | A231V | gCt | gTt | 6 | 6 | B.1.525 | 0.000679 |
ORF1ab/nsp3 | 231 | A231V | gCt | gTt | 6 | 6 | B.1.564 | 0.002555 |
ORF1ab/nsp3 | 231 | A231V | gCt | gTt | 6 | 6 | B.1.617.1 | 0.000774 |
ORF1ab/nsp3 | 231 | A231V | gCt | gTt | 6 | 6 | Q.1 | 0.000758 |
ORF1ab/nsp3 | 231 | A231V | gCt | gTt | 5 | 5 | AY.117 | 0.000423 |
ORF1ab/nsp3 | 231 | A231V | gCt | gTt | 5 | 5 | AY.16 | 0.001898 |
ORF1ab/nsp3 | 231 | A231A | gcT | gcA | 4 | 5 | AY.29 | 0.000063 |
ORF1ab/nsp3 | 231 | A231A | gcT | gcC | 1 | 5 | AY.29 | 0.000016 |
ORF1ab/nsp3 | 231 | A231T | Gct | Act | 5 | 5 | AY.4 | 0.000008 |
ORF1ab/nsp3 | 231 | A231A | gcT | gcC | 3 | 5 | AY.43 | 0.000013 |
ORF1ab/nsp3 | 231 | A231A | gcT | gcA | 2 | 5 | AY.43 | 0.000009 |
ORF1ab/nsp3 | 231 | A231V | gCt | gTt | 5 | 5 | AY.46.2 | 0.003177 |
ORF1ab/nsp3 | 231 | A231V | gCt | gTt | 5 | 5 | AY.54 | 0.000477 |
ORF1ab/nsp3 | 231 | A231S | Gct | Tct | 5 | 5 | B.1.1.176 | 0.002197 |
ORF1ab/nsp3 | 231 | A231V | gCt | gTt | 5 | 5 | B.1.1.222 | 0.00102 |
ORF1ab/nsp3 | 231 | A231S | Gct | Tct | 5 | 5 | B.1.36.17 | 0.00247 |
ORF1ab/nsp3 | 231 | A231V | gCt | gTt | 5 | 5 | B.1.369 | 0.001426 |
ORF1ab/nsp3 | 231 | A231V | gCt | gTt | 5 | 5 | B.1.438.1 | 0.000536 |
ORF1ab/nsp3 | 231 | A231V | gCt | gTt | 5 | 5 | B.1.564.1 | 0.007886 |
ORF1ab/nsp3 | 231 | A231T | Gct | Act | 5 | 5 | P.1 | 0.000079 |
ORF1ab/nsp3 | 231 | A231V | gCt | gTt | 4 | 4 | A.23.1 | 0.002817 |
ORF1ab/nsp3 | 231 | A231P | Gct | Cct | 4 | 4 | All | 0.000001 |
ORF1ab/nsp3 | 231 | A231del1 | gcT | gc- | 2 | 4 | All | 0 |
ORF1ab/nsp3 | 231 | A231del1 | Gct | -ct | 1 | 4 | All | 0 |
ORF1ab/nsp3 | 231 | A231del1 | gCt | g-t | 1 | 4 | All | 0 |
ORF1ab/nsp3 | 231 | A231S | Gct | Tct | 4 | 4 | AY.100 | 0.000184 |
ORF1ab/nsp3 | 231 | A231S | Gct | Tct | 4 | 4 | AY.117 | 0.000338 |
ORF1ab/nsp3 | 231 | A231V | gCt | gTt | 4 | 4 | AY.36 | 0.000593 |
ORF1ab/nsp3 | 231 | A231V | gCt | gTt | 4 | 4 | AY.46.4 | 0.000658 |
ORF1ab/nsp3 | 231 | A231T | Gct | Act | 4 | 4 | AY.47 | 0.000124 |
ORF1ab/nsp3 | 231 | A231A | gcT | gcC | 4 | 4 | AY.5 | 0.000083 |
ORF1ab/nsp3 | 231 | A231V | gCt | gTt | 4 | 4 | AY.61 | 0.000419 |
ORF1ab/nsp3 | 231 | A231T | Gct | Act | 4 | 4 | B.1.1.376 | 0.02381 |
ORF1ab/nsp3 | 231 | A231V | gCt | gTt | 4 | 4 | B.1.36 | 0.000584 |
ORF1ab/nsp3 | 231 | A231V | gCt | gTt | 4 | 4 | B.1.36.8 | 0.004 |
ORF1ab/nsp3 | 231 | A231V | gCt | gTt | 4 | 4 | B.1.577 | 0.002749 |
ORF1ab/nsp3 | 231 | A231V | gCt | gTt | 4 | 4 | B.1.621 | 0.000354 |
ORF1ab/nsp3 | 231 | A231V | gCt | gTt | 3 | 3 | A.2.5.1 | 0.014423 |
ORF1ab/nsp3 | 231 | A231D | gCt | gAt | 3 | 3 | All | 0.000001 |
ORF1ab/nsp3 | 231 | A231G | gCt | gGt | 3 | 3 | All | 0.000001 |
ORF1ab/nsp3 | 231 | A231V | gCt | gTt | 3 | 3 | AY.116 | 0.00086 |
ORF1ab/nsp3 | 231 | A231V | gCt | gTt | 3 | 3 | AY.13 | 0.000483 |
ORF1ab/nsp3 | 231 | A231V | gCt | gTt | 3 | 3 | AY.4.2.1 | 0.000447 |
ORF1ab/nsp3 | 231 | A231S | Gct | Tct | 3 | 3 | AY.54 | 0.000286 |
ORF1ab/nsp3 | 231 | A231V | gCt | gTt | 3 | 3 | AY.74 | 0.000347 |
ORF1ab/nsp3 | 231 | A231S | Gct | Tct | 3 | 3 | AY.9.2 | 0.00011 |
ORF1ab/nsp3 | 231 | A231V | gCt | gTt | 3 | 3 | AY.99.2 | 0.000276 |
ORF1ab/nsp3 | 231 | A231del | GCT | --- | 3 | 3 | B.1 | 0.000027 |
ORF1ab/nsp3 | 231 | A231V | gCt | gTt | 3 | 3 | B.1.1.214 | 0.000166 |
ORF1ab/nsp3 | 231 | A231V | gCt | gTt | 3 | 3 | B.1.1.318 | 0.000905 |
ORF1ab/nsp3 | 231 | A231del | GCT | --- | 3 | 3 | B.1.1.33 | 0.001263 |
ORF1ab/nsp3 | 231 | A231V | gCt | gTt | 3 | 3 | B.1.1.43 | 0.044776 |
ORF1ab/nsp3 | 231 | A231T | Gct | Act | 3 | 3 | B.1.1.519 | 0.000119 |
ORF1ab/nsp3 | 231 | A231V | gCt | gTt | 3 | 3 | B.1.139 | 0.002199 |
ORF1ab/nsp3 | 231 | A231V | gCt | gTt | 3 | 3 | B.1.177.24 | 0.003886 |
ORF1ab/nsp3 | 231 | A231V | gCt | gTt | 3 | 3 | B.1.177.77 | 0.002179 |
ORF1ab/nsp3 | 231 | A231V | gCt | gTt | 3 | 3 | B.1.177.86 | 0.00055 |
ORF1ab/nsp3 | 231 | A231T | Gct | Act | 3 | 3 | B.1.2 | 0.000026 |
ORF1ab/nsp3 | 231 | A231V | gCt | gTt | 3 | 3 | B.1.258.17 | 0.000312 |
ORF1ab/nsp3 | 231 | A231V | gCt | gTt | 3 | 3 | B.1.36.29 | 0.001552 |
ORF1ab/nsp3 | 231 | A231V | gCt | gTt | 3 | 3 | B.1.396 | 0.002117 |
ORF1ab/nsp3 | 231 | A231T | Gct | Act | 3 | 3 | B.1.427 | 0.000151 |
ORF1ab/nsp3 | 231 | A231V | gCt | gTt | 3 | 3 | B.1.466.2 | 0.001174 |
ORF1ab/nsp3 | 231 | A231V | gCt | gTt | 3 | 3 | B.1.556 | 0.022556 |
ORF1ab/nsp3 | 231 | A231V | gCt | gTt | 3 | 3 | B.1.637 | 0.000219 |
ORF1ab/nsp3 | 231 | A231V | gCt | gTt | 3 | 3 | B.41 | 0.024 |
ORF1ab/nsp3 | 231 | A231S | Gct | Tct | 3 | 3 | D.2 | 0.000225 |
ORF1ab/nsp3 | 231 | A231V | gCt | gTt | 3 | 3 | N.5 | 0.0053 |
ORF1ab/nsp3 | 231 | A231V | gCt | gTt | 3 | 3 | P.1.12 | 0.001452 |
ORF1ab/nsp3 | 231 | A231V | gCt | gTt | 3 | 3 | P.1.15 | 0.000697 |
ORF1ab/nsp3 | 231 | A231V | gCt | gTt | 3 | 3 | P.3 | 0.004785 |
ORF1ab/nsp3 | 231 | A231V | gCt | gTt | 3 | 3 | R.1 | 0.00027 |
ORF1ab/nsp3 | 231 | A231V | gCt | gTt | 2 | 2 | A.2.5 | 0.000998 |
ORF1ab/nsp3 | 231 | A231V | gCt | gTt | 2 | 2 | AY.104 | 0.003968 |
ORF1ab/nsp3 | 231 | A231S | Gct | Tct | 2 | 2 | AY.106 | 0.00067 |
ORF1ab/nsp3 | 231 | A231A | gcT | gcA | 2 | 2 | AY.118 | 0.000125 |
ORF1ab/nsp3 | 231 | A231V | gCt | gTt | 2 | 2 | AY.16.1 | 0.00094 |
ORF1ab/nsp3 | 231 | A231T | Gct | Act | 2 | 2 | AY.23 | 0.000139 |
ORF1ab/nsp3 | 231 | A231S | Gct | Tct | 2 | 2 | AY.26 | 0.000057 |
ORF1ab/nsp3 | 231 | A231S | Gct | Tct | 2 | 2 | AY.3.1 | 0.000171 |
ORF1ab/nsp3 | 231 | A231V | gCt | gTt | 2 | 2 | AY.30 | 0.000791 |
ORF1ab/nsp3 | 231 | A231V | gCt | gTt | 2 | 2 | AY.34 | 0.000194 |
ORF1ab/nsp3 | 231 | A231V | gCt | gTt | 2 | 2 | AY.34.1 | 0.00102 |
ORF1ab/nsp3 | 231 | A231A | gcT | gcC | 1 | 2 | AY.39 | 0.000025 |
ORF1ab/nsp3 | 231 | A231A | gcT | gcA | 1 | 2 | AY.39 | 0.000025 |
ORF1ab/nsp3 | 231 | A231T | Gct | Act | 2 | 2 | AY.44 | 0.000012 |
ORF1ab/nsp3 | 231 | A231A | gcT | gcA | 1 | 2 | AY.68 | 0.000274 |
ORF1ab/nsp3 | 231 | A231A | gcT | gcC | 1 | 2 | AY.68 | 0.000274 |
ORF1ab/nsp3 | 231 | A231V | gCt | gTt | 2 | 2 | AY.69 | 0.000373 |
ORF1ab/nsp3 | 231 | A231S | Gct | Tct | 2 | 2 | AY.70 | 0.000417 |
ORF1ab/nsp3 | 231 | A231V | gCt | gTt | 2 | 2 | AY.71 | 0.00095 |
ORF1ab/nsp3 | 231 | A231V | gCt | gTt | 2 | 2 | AY.84 | 0.000875 |
ORF1ab/nsp3 | 231 | A231V | gCt | gTt | 2 | 2 | AY.86 | 0.00166 |
ORF1ab/nsp3 | 231 | A231V | gCt | gTt | 2 | 2 | AY.92 | 0.000575 |
ORF1ab/nsp3 | 231 | A231S | Gct | Tct | 2 | 2 | AY.98 | 0.000158 |
ORF1ab/nsp3 | 231 | A231A | gcT | gcA | 2 | 2 | AY.99 | 0.002099 |
ORF1ab/nsp3 | 231 | A231V | gCt | gTt | 2 | 2 | B | 0.000256 |
ORF1ab/nsp3 | 231 | A231del1 | Gct | -ct | 1 | 2 | B.1 | 0.000009 |
ORF1ab/nsp3 | 231 | A231del1 | gcT | gc- | 1 | 2 | B.1 | 0.000009 |
ORF1ab/nsp3 | 231 | A231del | GCT | --- | 2 | 2 | B.1.1 | 0.000036 |
ORF1ab/nsp3 | 231 | A231A | gcT | gcA | 2 | 2 | B.1.1 | 0.000036 |
ORF1ab/nsp3 | 231 | A231V | gCt | gTt | 2 | 2 | B.1.1.159 | 0.009346 |
ORF1ab/nsp3 | 231 | A231V | gCt | gTt | 2 | 2 | B.1.1.192 | 0.004619 |
ORF1ab/nsp3 | 231 | A231V | gCt | gTt | 2 | 2 | B.1.1.198 | 0.002937 |
ORF1ab/nsp3 | 231 | A231V | gCt | gTt | 2 | 2 | B.1.1.210 | 0.011429 |
ORF1ab/nsp3 | 231 | A231V | gCt | gTt | 2 | 2 | B.1.1.231 | 0.006192 |
ORF1ab/nsp3 | 231 | A231V | gCT | gTA | 1 | 2 | B.1.1.240 | 0.004695 |
ORF1ab/nsp3 | 231 | A231V | gCt | gTt | 1 | 2 | B.1.1.240 | 0.004695 |
ORF1ab/nsp3 | 231 | A231V | gCt | gTt | 2 | 2 | B.1.1.265 | 0.006309 |
ORF1ab/nsp3 | 231 | A231V | gCt | gTt | 2 | 2 | B.1.1.322 | 0.017544 |
ORF1ab/nsp3 | 231 | A231del | GCT | --- | 2 | 2 | B.1.1.348 | 0.001592 |
ORF1ab/nsp3 | 231 | A231V | gCt | gTt | 2 | 2 | B.1.1.409 | 0.005666 |
ORF1ab/nsp3 | 231 | A231V | gCt | gTt | 2 | 2 | B.1.1.416 | 0.00181 |
ORF1ab/nsp3 | 231 | A231V | gCt | gTt | 2 | 2 | B.1.1.434 | 0.000697 |
ORF1ab/nsp3 | 231 | A231del | GCT | --- | 2 | 2 | B.1.1.7 | 0.000002 |
ORF1ab/nsp3 | 231 | A231V | gCt | gTt | 2 | 2 | B.1.1.70 | 0.000682 |
ORF1ab/nsp3 | 231 | A231V | gCt | gTt | 2 | 2 | B.1.1.71 | 0.012121 |
ORF1ab/nsp3 | 231 | A231V | gCt | gTt | 2 | 2 | B.1.110.3 | 0.001437 |
ORF1ab/nsp3 | 231 | A231V | gCt | gTt | 2 | 2 | B.1.131 | 0.017544 |
ORF1ab/nsp3 | 231 | A231S | Gct | Tct | 2 | 2 | B.1.177 | 0.000026 |
ORF1ab/nsp3 | 231 | A231V | gCt | gTt | 2 | 2 | B.1.177.2 | 0.009091 |
ORF1ab/nsp3 | 231 | A231V | gCt | gTt | 2 | 2 | B.1.177.20 | 0.003035 |
ORF1ab/nsp3 | 231 | A231V | gCt | gTt | 2 | 2 | B.1.177.35 | 0.001382 |
ORF1ab/nsp3 | 231 | A231S | Gct | Tct | 2 | 2 | B.1.177.52 | 0.003515 |
ORF1ab/nsp3 | 231 | A231V | gCt | gTt | 2 | 2 | B.1.232 | 0.001075 |
ORF1ab/nsp3 | 231 | A231V | gCt | gTt | 2 | 2 | B.1.241 | 0.001623 |
ORF1ab/nsp3 | 231 | A231S | Gct | Tct | 2 | 2 | B.1.351 | 0.000059 |
ORF1ab/nsp3 | 231 | A231V | gCt | gTt | 2 | 2 | B.1.351.2 | 0.000605 |
ORF1ab/nsp3 | 231 | A231A | gcT | gcA | 2 | 2 | B.1.36.17 | 0.000988 |
ORF1ab/nsp3 | 231 | A231V | gCt | gTt | 2 | 2 | B.1.398 | 0.005952 |
ORF1ab/nsp3 | 231 | A231V | gCt | gTt | 2 | 2 | B.1.400 | 0.000858 |
ORF1ab/nsp3 | 231 | A231S | Gct | Tct | 2 | 2 | B.1.409 | 0.001563 |
ORF1ab/nsp3 | 231 | A231V | gCt | gTt | 2 | 2 | B.1.426 | 0.002018 |
ORF1ab/nsp3 | 231 | A231V | gCt | gTt | 2 | 2 | B.1.544 | 0.012048 |
ORF1ab/nsp3 | 231 | A231V | gCt | gTt | 2 | 2 | B.1.575 | 0.000607 |
ORF1ab/nsp3 | 231 | A231V | gCt | gTt | 2 | 2 | B.1.576 | 0.001813 |
ORF1ab/nsp3 | 231 | A231A | gcT | gcA | 2 | 2 | B.1.596 | 0.000174 |
ORF1ab/nsp3 | 231 | A231T | Gct | Act | 2 | 2 | B.1.617.2 | 0.000008 |
ORF1ab/nsp3 | 231 | A231T | Gct | Act | 2 | 2 | B.1.621 | 0.000177 |
ORF1ab/nsp3 | 231 | A231A | gcT | gcC | 2 | 2 | C.37 | 0.000232 |
ORF1ab/nsp3 | 231 | A231del | GCT | --- | 2 | 2 | N.6 | 0.014184 |
ORF1ab/nsp3 | 231 | A231S | Gct | Tct | 2 | 2 | P.1 | 0.000032 |
ORF1ab/nsp3 | 231 | A231V | gCt | gTt | 2 | 2 | P.2 | 0.000373 |
ORF1ab/nsp3 | 231 | A231S | Gct | Tct | 2 | 2 | R.1 | 0.00018 |
ORF1ab/nsp3 | 231 | A231del1 | gCt | g-t | 1 | 1 | A | 0.000387 |
ORF1ab/nsp3 | 231 | A231V | gCt | gTt | 1 | 1 | A | 0.000387 |
ORF1ab/nsp3 | 231 | A231V | gCt | gTt | 1 | 1 | A.1 | 0.000282 |
ORF1ab/nsp3 | 231 | A231A | gcT | gcA | 1 | 1 | A.5 | 0.001923 |
ORF1ab/nsp3 | 231 | A231V | gCt | gTt | 1 | 1 | AA.6 | 0.016129 |
ORF1ab/nsp3 | 231 | A231F | GCt | TTt | 1 | 1 | All | 0 |
ORF1ab/nsp3 | 231 | A231S | Gct | Tct | 1 | 1 | AY.1 | 0.000396 |
ORF1ab/nsp3 | 231 | A231V | gCt | gTt | 1 | 1 | AY.1 | 0.000396 |
ORF1ab/nsp3 | 231 | A231T | Gct | Act | 1 | 1 | AY.103 | 0.000006 |
ORF1ab/nsp3 | 231 | A231del1 | gcT | gc- | 1 | 1 | AY.103 | 0.000006 |
ORF1ab/nsp3 | 231 | A231V | gCt | gTt | 1 | 1 | AY.105 | 0.000643 |
ORF1ab/nsp3 | 231 | A231del | GCT | --- | 1 | 1 | AY.11 | 0.001339 |
ORF1ab/nsp3 | 231 | A231T | Gct | Act | 1 | 1 | AY.114 | 0.000231 |
ORF1ab/nsp3 | 231 | A231V | gCt | gTt | 1 | 1 | AY.115 | 0.005208 |
ORF1ab/nsp3 | 231 | A231A | gcT | gcA | 1 | 1 | AY.119 | 0.000035 |
ORF1ab/nsp3 | 231 | A231V | gCt | gTt | 1 | 1 | AY.12 | 0.000316 |
ORF1ab/nsp3 | 231 | A231A | gcT | gcC | 1 | 1 | AY.12 | 0.000316 |
ORF1ab/nsp3 | 231 | A231del | GCT | --- | 1 | 1 | AY.120 | 0.000037 |
ORF1ab/nsp3 | 231 | A231S | Gct | Tct | 1 | 1 | AY.120 | 0.000037 |
ORF1ab/nsp3 | 231 | A231V | gCt | gTt | 1 | 1 | AY.120.1 | 0.000321 |
ORF1ab/nsp3 | 231 | A231del | GCT | --- | 1 | 1 | AY.120.1 | 0.000321 |
ORF1ab/nsp3 | 231 | A231V | gCt | gTt | 1 | 1 | AY.120.2.1 | 0.000498 |
ORF1ab/nsp3 | 231 | A231G | gCt | gGt | 1 | 1 | AY.16.1 | 0.00047 |
ORF1ab/nsp3 | 231 | A231V | gCt | gTt | 1 | 1 | AY.24 | 0.000431 |
ORF1ab/nsp3 | 231 | A231S | Gct | Tct | 1 | 1 | AY.25 | 0.000006 |
ORF1ab/nsp3 | 231 | A231A | gcT | gcC | 1 | 1 | AY.25 | 0.000006 |
ORF1ab/nsp3 | 231 | A231T | Gct | Act | 1 | 1 | AY.25 | 0.000006 |
ORF1ab/nsp3 | 231 | A231S | Gct | Tct | 1 | 1 | AY.27 | 0.000065 |
ORF1ab/nsp3 | 231 | A231V | gCt | gTt | 1 | 1 | AY.3.1 | 0.000085 |
ORF1ab/nsp3 | 231 | A231A | gcT | gcC | 1 | 1 | AY.33 | 0.000067 |
ORF1ab/nsp3 | 231 | A231T | Gct | Act | 1 | 1 | AY.34.1 | 0.00051 |
ORF1ab/nsp3 | 231 | A231S | Gct | Tct | 1 | 1 | AY.36 | 0.000148 |
ORF1ab/nsp3 | 231 | A231V | gCt | gTt | 1 | 1 | AY.38 | 0.000499 |
ORF1ab/nsp3 | 231 | A231T | Gct | Act | 1 | 1 | AY.39 | 0.000025 |
ORF1ab/nsp3 | 231 | A231V | gCt | gTt | 1 | 1 | AY.39.2 | 0.001541 |
ORF1ab/nsp3 | 231 | A231T | Gct | Act | 1 | 1 | AY.42 | 0.00004 |
ORF1ab/nsp3 | 231 | A231del | GCT | --- | 1 | 1 | AY.43 | 0.000004 |
ORF1ab/nsp3 | 231 | A231A | gcT | gcA | 1 | 1 | AY.45 | 0.000122 |
ORF1ab/nsp3 | 231 | A231A | gcT | gcC | 1 | 1 | AY.46 | 0.000104 |
ORF1ab/nsp3 | 231 | A231S | Gct | Tct | 1 | 1 | AY.46 | 0.000104 |
ORF1ab/nsp3 | 231 | A231V | gCt | gTt | 1 | 1 | AY.46.6 | 0.000072 |
ORF1ab/nsp3 | 231 | A231T | Gct | Act | 1 | 1 | AY.46.6 | 0.000072 |
ORF1ab/nsp3 | 231 | A231V | gCt | gTt | 1 | 1 | AY.52 | 0.000814 |
ORF1ab/nsp3 | 231 | A231V | gCt | gTt | 1 | 1 | AY.53 | 0.000288 |
ORF1ab/nsp3 | 231 | A231V | gCt | gTt | 1 | 1 | AY.55 | 0.000917 |
ORF1ab/nsp3 | 231 | A231T | Gct | Act | 1 | 1 | AY.59 | 0.00053 |
ORF1ab/nsp3 | 231 | A231V | gCt | gTt | 1 | 1 | AY.62 | 0.000436 |
ORF1ab/nsp3 | 231 | A231V | gCt | gTt | 1 | 1 | AY.68 | 0.000274 |
ORF1ab/nsp3 | 231 | A231V | gCt | gTt | 1 | 1 | AY.7 | 0.000196 |
ORF1ab/nsp3 | 231 | A231V | gCt | gTt | 1 | 1 | AY.70 | 0.000209 |
ORF1ab/nsp3 | 231 | A231A | gcT | gcA | 1 | 1 | AY.75 | 0.000056 |
ORF1ab/nsp3 | 231 | A231V | gCt | gTt | 1 | 1 | AY.75.1 | 0.00018 |
ORF1ab/nsp3 | 231 | A231V | gCt | gTt | 1 | 1 | AY.76 | 0.004831 |
ORF1ab/nsp3 | 231 | A231V | gCt | gTt | 1 | 1 | AY.77 | 0.001127 |
ORF1ab/nsp3 | 231 | A231V | gCt | gTt | 1 | 1 | AY.79 | 0.001211 |
ORF1ab/nsp3 | 231 | A231S | Gct | Tct | 1 | 1 | AY.79 | 0.001211 |
ORF1ab/nsp3 | 231 | A231V | gCt | gTt | 1 | 1 | AY.83 | 0.001724 |
ORF1ab/nsp3 | 231 | A231F | GCt | TTt | 1 | 1 | AY.85 | 0.000427 |
ORF1ab/nsp3 | 231 | A231S | Gct | Tct | 1 | 1 | AY.85 | 0.000427 |
ORF1ab/nsp3 | 231 | A231V | gCt | gTt | 1 | 1 | AY.89 | 0.004902 |
ORF1ab/nsp3 | 231 | A231del | GCT | --- | 1 | 1 | AY.9 | 0.000068 |
ORF1ab/nsp3 | 231 | A231A | gcT | gcC | 1 | 1 | AY.9 | 0.000068 |
ORF1ab/nsp3 | 231 | A231V | gCt | gTt | 1 | 1 | AY.9 | 0.000068 |
ORF1ab/nsp3 | 231 | A231V | gCt | gTt | 1 | 1 | AY.90 | 0.000684 |
ORF1ab/nsp3 | 231 | A231A | gcT | gcA | 1 | 1 | AY.92 | 0.000287 |
ORF1ab/nsp3 | 231 | A231V | gCt | gTt | 1 | 1 | AY.95 | 0.000761 |
ORF1ab/nsp3 | 231 | A231S | Gct | Tct | 1 | 1 | AY.98.1 | 0.000048 |
ORF1ab/nsp3 | 231 | A231V | gCt | gTt | 1 | 1 | AY.99.1 | 0.001553 |
ORF1ab/nsp3 | 231 | A231V | gCt | gTt | 1 | 1 | AZ.1 | 0.000867 |
ORF1ab/nsp3 | 231 | A231V | gCt | gTt | 1 | 1 | AZ.5 | 0.003509 |
ORF1ab/nsp3 | 231 | A231A | gcT | gcA | 1 | 1 | B | 0.000128 |
ORF1ab/nsp3 | 231 | A231P | Gct | Cct | 1 | 1 | B.1 | 0.000009 |
ORF1ab/nsp3 | 231 | A231D | gCt | gAt | 1 | 1 | B.1 | 0.000009 |
ORF1ab/nsp3 | 231 | A231T | Gct | Act | 1 | 1 | B.1.1 | 0.000018 |
ORF1ab/nsp3 | 231 | A231S | GcT | TcC | 1 | 1 | B.1.1.139 | 0.022727 |
ORF1ab/nsp3 | 231 | A231A | gcT | gcA | 1 | 1 | B.1.1.141 | 0.002012 |
ORF1ab/nsp3 | 231 | A231A | gcT | gcG | 1 | 1 | B.1.1.15 | 0.013514 |
ORF1ab/nsp3 | 231 | A231V | gCt | gTt | 1 | 1 | B.1.1.153 | 0.001095 |
ORF1ab/nsp3 | 231 | A231V | gCt | gTt | 1 | 1 | B.1.1.158 | 0.012195 |
ORF1ab/nsp3 | 231 | A231V | gCt | gTt | 1 | 1 | B.1.1.170 | 0.001247 |
ORF1ab/nsp3 | 231 | A231V | gCt | gTt | 1 | 1 | B.1.1.172 | 0.018182 |
ORF1ab/nsp3 | 231 | A231G | gCt | gGt | 1 | 1 | B.1.1.174 | 0.003378 |
ORF1ab/nsp3 | 231 | A231V | gCt | gTt | 1 | 1 | B.1.1.216 | 0.00089 |
ORF1ab/nsp3 | 231 | A231T | Gct | Act | 1 | 1 | B.1.1.222 | 0.000204 |
ORF1ab/nsp3 | 231 | A231A | gcT | gcA | 1 | 1 | B.1.1.240 | 0.004695 |
ORF1ab/nsp3 | 231 | A231V | gCt | gTt | 1 | 1 | B.1.1.25 | 0.000569 |
ORF1ab/nsp3 | 231 | A231V | gCt | gTt | 1 | 1 | B.1.1.263 | 0.001558 |
ORF1ab/nsp3 | 231 | A231V | gCt | gTt | 1 | 1 | B.1.1.28 | 0.000311 |
ORF1ab/nsp3 | 231 | A231A | gcT | gcC | 1 | 1 | B.1.1.294 | 0.001266 |
ORF1ab/nsp3 | 231 | A231V | gCt | gTt | 1 | 1 | B.1.1.304 | 0.002809 |
ORF1ab/nsp3 | 231 | A231S | Gct | Tct | 1 | 1 | B.1.1.317 | 0.000412 |
ORF1ab/nsp3 | 231 | A231V | gCt | gTt | 1 | 1 | B.1.1.340 | 0.045455 |
ORF1ab/nsp3 | 231 | A231V | gCt | gTt | 1 | 1 | B.1.1.354 | 0.004386 |
ORF1ab/nsp3 | 231 | A231S | Gct | Tct | 1 | 1 | B.1.1.372 | 0.000689 |
ORF1ab/nsp3 | 231 | A231V | gCt | gTt | 1 | 1 | B.1.1.389 | 0.006061 |
ORF1ab/nsp3 | 231 | A231G | gCt | gGt | 1 | 1 | B.1.1.39 | 0.00051 |
ORF1ab/nsp3 | 231 | A231A | gcT | gcA | 1 | 1 | B.1.1.409 | 0.002833 |
ORF1ab/nsp3 | 231 | A231V | gCt | gTt | 1 | 1 | B.1.1.418 | 0.022727 |
ORF1ab/nsp3 | 231 | A231V | gCt | gTt | 1 | 1 | B.1.1.419 | 0.007407 |
ORF1ab/nsp3 | 231 | A231V | gCt | gTt | 1 | 1 | B.1.1.420 | 0.001006 |
ORF1ab/nsp3 | 231 | A231V | gCt | gTt | 1 | 1 | B.1.1.44 | 0.00241 |
ORF1ab/nsp3 | 231 | A231V | gCt | gTt | 1 | 1 | B.1.1.63 | 0.000386 |
ORF1ab/nsp3 | 231 | A231S | Gct | Tct | 1 | 1 | B.1.1.70 | 0.000341 |
ORF1ab/nsp3 | 231 | A231V | gCt | gTt | 1 | 1 | B.1.115 | 0.021739 |
ORF1ab/nsp3 | 231 | A231V | gCt | gTt | 1 | 1 | B.1.140 | 0.018868 |
ORF1ab/nsp3 | 231 | A231A | gcT | gcC | 1 | 1 | B.1.147 | 0.000756 |
ORF1ab/nsp3 | 231 | A231A | gcT | gcC | 1 | 1 | B.1.157 | 0.002985 |
ORF1ab/nsp3 | 231 | A231T | Gct | Act | 1 | 1 | B.1.160 | 0.000031 |
ORF1ab/nsp3 | 231 | A231S | Gct | Tct | 1 | 1 | B.1.160 | 0.000031 |
ORF1ab/nsp3 | 231 | A231V | gCt | gTt | 1 | 1 | B.1.160.16 | 0.000929 |
ORF1ab/nsp3 | 231 | A231A | gcT | gcC | 1 | 1 | B.1.160.24 | 0.004425 |
ORF1ab/nsp3 | 231 | A231P | Gct | Cct | 1 | 1 | B.1.177 | 0.000013 |
ORF1ab/nsp3 | 231 | A231A | gcT | gcA | 1 | 1 | B.1.177.16 | 0.000664 |
ORF1ab/nsp3 | 231 | A231V | gCt | gTt | 1 | 1 | B.1.177.21 | 0.000076 |
ORF1ab/nsp3 | 231 | A231D | gCt | gAt | 1 | 1 | B.1.177.21 | 0.000076 |
ORF1ab/nsp3 | 231 | A231V | gCt | gTt | 1 | 1 | B.1.177.47 | 0.012987 |
ORF1ab/nsp3 | 231 | A231V | gCt | gTt | 1 | 1 | B.1.177.51 | 0.004566 |
ORF1ab/nsp3 | 231 | A231V | gCt | gTt | 1 | 1 | B.1.177.63 | 0.002703 |
ORF1ab/nsp3 | 231 | A231V | gCt | gTt | 1 | 1 | B.1.177.75 | 0.001041 |
ORF1ab/nsp3 | 231 | A231V | gCt | gTt | 1 | 1 | B.1.177.82 | 0.000477 |
ORF1ab/nsp3 | 231 | A231V | gCt | gTt | 1 | 1 | B.1.177.83 | 0.001481 |
ORF1ab/nsp3 | 231 | A231S | Gct | Tct | 1 | 1 | B.1.2 | 0.000009 |
ORF1ab/nsp3 | 231 | A231V | gCt | gTt | 1 | 1 | B.1.214 | 0.003663 |
ORF1ab/nsp3 | 231 | A231A | gcT | gcA | 1 | 1 | B.1.221.4 | 0.004167 |
ORF1ab/nsp3 | 231 | A231V | gCt | gTt | 1 | 1 | B.1.239 | 0.001221 |
ORF1ab/nsp3 | 231 | A231A | gcT | gcA | 1 | 1 | B.1.239 | 0.001221 |
ORF1ab/nsp3 | 231 | A231A | gcT | gcA | 1 | 1 | B.1.243 | 0.00007 |
ORF1ab/nsp3 | 231 | A231V | gCt | gTt | 1 | 1 | B.1.258.11 | 0.000396 |
ORF1ab/nsp3 | 231 | A231A | gcT | gcA | 1 | 1 | B.1.258.17 | 0.000104 |
ORF1ab/nsp3 | 231 | A231V | gCt | gTt | 1 | 1 | B.1.260 | 0.003344 |
ORF1ab/nsp3 | 231 | A231V | gCt | gTt | 1 | 1 | B.1.270 | 0.005618 |
ORF1ab/nsp3 | 231 | A231V | gCt | gTt | 1 | 1 | B.1.306 | 0.005714 |
ORF1ab/nsp3 | 231 | A231V | gCt | gTt | 1 | 1 | B.1.313 | 0.006579 |
ORF1ab/nsp3 | 231 | A231V | gCt | gTt | 1 | 1 | B.1.349 | 0.000715 |
ORF1ab/nsp3 | 231 | A231T | Gct | Act | 1 | 1 | B.1.351 | 0.00003 |
ORF1ab/nsp3 | 231 | A231V | gCt | gTt | 1 | 1 | B.1.351.3 | 0.000876 |
ORF1ab/nsp3 | 231 | A231A | gcT | gcA | 1 | 1 | B.1.36 | 0.000146 |
ORF1ab/nsp3 | 231 | A231V | gCt | gTt | 1 | 1 | B.1.36.10 | 0.004785 |
ORF1ab/nsp3 | 231 | A231V | gCt | gTt | 1 | 1 | B.1.36.19 | 0.009259 |
ORF1ab/nsp3 | 231 | A231V | gCt | gTt | 1 | 1 | B.1.36.37 | 0.002778 |
ORF1ab/nsp3 | 231 | A231V | gCt | gTt | 1 | 1 | B.1.366 | 0.004878 |
ORF1ab/nsp3 | 231 | A231T | Gct | Act | 1 | 1 | B.1.371 | 0.001122 |
ORF1ab/nsp3 | 231 | A231V | gCt | gTt | 1 | 1 | B.1.371 | 0.001122 |
ORF1ab/nsp3 | 231 | A231V | gCt | gTt | 1 | 1 | B.1.389 | 0.001002 |
ORF1ab/nsp3 | 231 | A231A | gcT | gcC | 1 | 1 | B.1.391 | 0.001127 |
ORF1ab/nsp3 | 231 | A231V | gCt | gTt | 1 | 1 | B.1.408 | 0.00369 |
ORF1ab/nsp3 | 231 | A231T | Gct | Act | 1 | 1 | B.1.413 | 0.004255 |
ORF1ab/nsp3 | 231 | A231V | gCt | gTt | 1 | 1 | B.1.428 | 0.00102 |
ORF1ab/nsp3 | 231 | A231T | Gct | Act | 1 | 1 | B.1.429 | 0.000024 |
ORF1ab/nsp3 | 231 | A231del | GCT | --- | 1 | 1 | B.1.429 | 0.000024 |
ORF1ab/nsp3 | 231 | A231V | gCt | gTt | 1 | 1 | B.1.441 | 0.009615 |
ORF1ab/nsp3 | 231 | A231V | gCt | gTt | 1 | 1 | B.1.468 | 0.005714 |
ORF1ab/nsp3 | 231 | A231V | gCt | gTt | 1 | 1 | B.1.509 | 0.000866 |
ORF1ab/nsp3 | 231 | A231T | Gct | Act | 1 | 1 | B.1.523 | 0.002451 |
ORF1ab/nsp3 | 231 | A231V | gCt | gTt | 1 | 1 | B.1.531 | 0.083333 |
ORF1ab/nsp3 | 231 | A231V | gCt | gTt | 1 | 1 | B.1.540 | 0.009709 |
ORF1ab/nsp3 | 231 | A231V | gCt | gTt | 1 | 1 | B.1.551 | 0.00129 |
ORF1ab/nsp3 | 231 | A231A | gcT | gcC | 1 | 1 | B.1.565 | 0.00081 |
ORF1ab/nsp3 | 231 | A231P | Gct | Cct | 1 | 1 | B.1.567 | 0.003333 |
ORF1ab/nsp3 | 231 | A231V | gCt | gTt | 1 | 1 | B.1.569 | 0.014493 |
ORF1ab/nsp3 | 231 | A231A | gcT | gcA | 1 | 1 | B.1.576 | 0.000907 |
ORF1ab/nsp3 | 231 | A231V | gCt | gTt | 1 | 1 | B.1.587 | 0.001898 |
ORF1ab/nsp3 | 231 | A231V | gCt | gTt | 1 | 1 | B.1.595.1 | 0.005848 |
ORF1ab/nsp3 | 231 | A231V | gCt | gTt | 1 | 1 | B.1.595.4 | 0.007299 |
ORF1ab/nsp3 | 231 | A231D | gCt | gAt | 1 | 1 | B.1.617.2 | 0.000004 |
ORF1ab/nsp3 | 231 | A231del | GCT | --- | 1 | 1 | B.1.617.2 | 0.000004 |
ORF1ab/nsp3 | 231 | A231V | gCt | gTt | 1 | 1 | B.1.619 | 0.000871 |
ORF1ab/nsp3 | 231 | A231V | gCt | gTt | 1 | 1 | B.1.620 | 0.000946 |
ORF1ab/nsp3 | 231 | A231V | gCt | gTt | 1 | 1 | B.1.621.1 | 0.000506 |
ORF1ab/nsp3 | 231 | A231A | gcT | gcC | 1 | 1 | B.1.628 | 0.000352 |
ORF1ab/nsp3 | 231 | A231del | GCT | --- | 1 | 1 | B.1.630 | 0.005236 |
ORF1ab/nsp3 | 231 | A231A | gcT | gcC | 1 | 1 | B.1.634 | 0.003425 |
ORF1ab/nsp3 | 231 | A231V | gCt | gTt | 1 | 1 | B.1.634 | 0.003425 |
ORF1ab/nsp3 | 231 | A231T | Gct | Act | 1 | 1 | B.1.637 | 0.000073 |
ORF1ab/nsp3 | 231 | A231V | gCt | gTt | 1 | 1 | B.1.70 | 0.02439 |
ORF1ab/nsp3 | 231 | A231V | gCt | gTt | 1 | 1 | B.1.94 | 0.027027 |
ORF1ab/nsp3 | 231 | A231S | Gct | Tct | 1 | 1 | B.3 | 0.000831 |
ORF1ab/nsp3 | 231 | A231V | gCt | gTt | 1 | 1 | B.30 | 0.014706 |
ORF1ab/nsp3 | 231 | A231T | Gct | Act | 1 | 1 | B.6 | 0.00091 |
ORF1ab/nsp3 | 231 | A231P | Gct | Cct | 1 | 1 | D.2 | 0.000075 |
ORF1ab/nsp3 | 231 | A231V | gCt | gTt | 1 | 1 | N.3 | 0.005814 |
ORF1ab/nsp3 | 231 | A231del | GCT | --- | 1 | 1 | P.1 | 0.000016 |
ORF1ab/nsp3 | 231 | A231A | gcT | gcC | 1 | 1 | P.1 | 0.000016 |
ORF1ab/nsp3 | 231 | A231V | gCt | gTt | 1 | 1 | P.1.1 | 0.000318 |
ORF1ab/nsp3 | 231 | A231V | gCt | gTt | 1 | 1 | P.1.10 | 0.000269 |
ORF1ab/nsp3 | 231 | A231S | Gct | Tct | 1 | 1 | P.1.14 | 0.000048 |
ORF1ab/nsp3 | 231 | A231V | gCt | gTt | 1 | 1 | P.1.2 | 0.001156 |
ORF1ab/nsp3 | 231 | A231V | gCt | gTt | 1 | 1 | P.1.4 | 0.000977 |
ORF1ab/nsp3 | 231 | A231V | gCt | gTt | 1 | 1 | Q.3 | 0.000145 |
ORF1ab/nsp3 | 231 | A231del | GCT | --- | 1 | 1 | R.1 | 0.00009 |
CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk
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