CoV-GLUEGenomeCountriesLineagesMutationsInsertionsDeletionsUpdated:

CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF1ab/nsp3 : CodonNum = 226 & Codon = gaT

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF1ab/nsp3226D226DD1044DsyngaCgaT4115411513395-3397

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF1ab/nsp3226D226DgaCgaT41154115All0.000787
ORF1ab/nsp3226D226DgaCgaT22402240B.1.1.70.002005
ORF1ab/nsp3226D226DgaCgaT11111111B.1.2210.078917
ORF1ab/nsp3226D226DgaCgaT172172B.1.5820.084396
ORF1ab/nsp3226D226DgaCgaT7171B.10.00065
ORF1ab/nsp3226D226DgaCgaT5858B.1.5710.563107
ORF1ab/nsp3226D226DgaCgaT4848AY.440.000292
ORF1ab/nsp3226D226DgaCgaT4141AY.40.000064
ORF1ab/nsp3226D226DgaCgaT2828AY.430.000124
ORF1ab/nsp3226D226DgaCgaT2222B.1.2430.001531
ORF1ab/nsp3226D226DgaCgaT2121AY.50.000434
ORF1ab/nsp3226D226DgaCgaT2020AY.330.001336
ORF1ab/nsp3226D226DgaCgaT1919B.1.1.2910.014105
ORF1ab/nsp3226D226DgaCgaT1717B.1.20.00015
ORF1ab/nsp3226D226DgaCgaT1717B.1.2100.036247
ORF1ab/nsp3226D226DgaCgaT1717C.36.30.009643
ORF1ab/nsp3226D226DgaCgaT1515B.1.6210.001328
ORF1ab/nsp3226D226DgaCgaT1212AY.30.000119
ORF1ab/nsp3226D226DgaCgaT1111B.1.617.20.000041
ORF1ab/nsp3226D226DgaCgaT1010B.1.4270.000505
ORF1ab/nsp3226D226DgaCgaT99AY.1030.000056
ORF1ab/nsp3226D226DgaCgaT99AY.260.000255
ORF1ab/nsp3226D226DgaCgaT99AY.60.00037
ORF1ab/nsp3226D226DgaCgaT99B.1.10.000163
ORF1ab/nsp3226D226DgaCgaT66AY.420.000241
ORF1ab/nsp3226D226DgaCgaT66B.1.4090.004687
ORF1ab/nsp3226D226DgaCgaT66B.1.5960.000523
ORF1ab/nsp3226D226DgaCgaT55B.1.1770.000066
ORF1ab/nsp3226D226DgaCgaT55B.1.4290.000118
ORF1ab/nsp3226D226DgaCgaT55B.1.466.20.001956
ORF1ab/nsp3226D226DgaCgaT44AY.250.000024
ORF1ab/nsp3226D226DgaCgaT44B.1.4390.023669
ORF1ab/nsp3226D226DgaCgaT33AY.200.000117
ORF1ab/nsp3226D226DgaCgaT33AY.290.000047
ORF1ab/nsp3226D226DgaCgaT33AY.390.000074
ORF1ab/nsp3226D226DgaCgaT33AY.650.001599
ORF1ab/nsp3226D226DgaCgaT33B.1.1.700.001023
ORF1ab/nsp3226D226DgaCgaT33B.1.1600.000094
ORF1ab/nsp3226D226DgaCgaT33B.1.3510.000089
ORF1ab/nsp3226D226DgaCgaT22AY.1020.000053
ORF1ab/nsp3226D226DgaCgaT22AY.1200.000074
ORF1ab/nsp3226D226DgaCgaT22AY.140.000176
ORF1ab/nsp3226D226DgaCgaT22AY.46.60.000144
ORF1ab/nsp3226D226DgaCgaT22B.1.1.5190.000079
ORF1ab/nsp3226D226DgaCgaT22B.1.177.810.000379
ORF1ab/nsp3226D226DgaCgaT22B.1.5950.000522
ORF1ab/nsp3226D226DgaCgaT22B.1.6370.000146
ORF1ab/nsp3226D226DgaCgaT22D.20.00015
ORF1ab/nsp3226D226DgaCgaT22P.10.000032
ORF1ab/nsp3226D226DgaCgaT22P.1.170.000324
ORF1ab/nsp3226D226DgaCgaT11AY.1000.000046
ORF1ab/nsp3226D226DgaCgaT11AY.1060.000335
ORF1ab/nsp3226D226DgaCgaT11AY.1110.000183
ORF1ab/nsp3226D226DgaCgaT11AY.1160.000287
ORF1ab/nsp3226D226DgaCgaT11AY.1210.000135
ORF1ab/nsp3226D226DgaCgaT11AY.160.00038
ORF1ab/nsp3226D226DgaCgaT11AY.16.10.00047
ORF1ab/nsp3226D226DgaCgaT11AY.39.10.00004
ORF1ab/nsp3226D226DgaCgaT11AY.450.000122
ORF1ab/nsp3226D226DgaCgaT11AY.46.50.000198
ORF1ab/nsp3226D226DgaCgaT11AY.70.000196
ORF1ab/nsp3226D226DgaCgaT11AY.720.001361
ORF1ab/nsp3226D226DgaCgaT11AY.750.000056
ORF1ab/nsp3226D226DgaCgaT11AY.75.10.00018
ORF1ab/nsp3226D226DgaCgaT11AY.9.10.000084
ORF1ab/nsp3226D226DgaCgaT11AY.980.000079
ORF1ab/nsp3226D226DgaCgaT11B.1.1.2220.000204
ORF1ab/nsp3226D226DgaCgaT11B.1.1.3110.000358
ORF1ab/nsp3226D226DgaCgaT11B.1.1.330.000421
ORF1ab/nsp3226D226DgaCgaT11B.1.1.4320.001266
ORF1ab/nsp3226D226DgaCgaT11B.1.1.5230.001563
ORF1ab/nsp3226D226DgaCgaT11B.1.177.520.001757
ORF1ab/nsp3226D226DgaCgaT11B.1.177.690.001484
ORF1ab/nsp3226D226DgaCgaT11B.1.221.20.004016
ORF1ab/nsp3226D226DgaCgaT11B.1.2400.000216
ORF1ab/nsp3226D226DgaCgaT11B.1.2580.000067
ORF1ab/nsp3226D226DgaCgaT11B.1.2790.000514
ORF1ab/nsp3226D226DgaCgaT11B.1.2930.0125
ORF1ab/nsp3226D226DgaCgaT11B.1.3240.001605
ORF1ab/nsp3226D226DgaCgaT11B.1.36.180.00042
ORF1ab/nsp3226D226DgaCgaT11B.1.3690.000285
ORF1ab/nsp3226D226DgaCgaT11B.1.438.10.000107
ORF1ab/nsp3226D226DgaCgaT11B.1.5010.007353
ORF1ab/nsp3226D226DgaCgaT11B.1.5170.000427
ORF1ab/nsp3226D226DgaCgaT11B.1.5260.000024
ORF1ab/nsp3226D226DgaCgaT11B.1.5670.003333
ORF1ab/nsp3226D226DgaCgaT11B.1.5680.001111
ORF1ab/nsp3226D226DgaCgaT11B.1.930.000934
ORF1ab/nsp3226D226DgaCgaT11C.210.142857
ORF1ab/nsp3226D226DgaCgaT11C.370.000116
ORF1ab/nsp3226D226DgaCgaT11P.1.140.000048
ORF1ab/nsp3226D226DgaCgaT11P.1.150.000232
ORF1ab/nsp3226D226DgaCgaT11P.20.000187
ORF1ab/nsp3226D226DgaCgaT11Q.10.000126
ORF1ab/nsp3226D226DgaCgaT11Q.80.000165

CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk

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