CoV-GLUE | Mutations | Mutation
Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):
ORF | CodonNum | Mut | ORF1abMut | MutType | RefCodon | MutCodon | AACount | CodonCount | CodonProp | Genome Position |
ORF1ab/nsp3 | 226 | D226D | D1044D | syn | gaC | gaT | 4115 | 4115 | 1 | 3395-3397 |
Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):
ORF | CodonNum | Mut | RefCodon | MutCodon | CodonCount | AACount | Lineage | LineageCodonProp |
ORF1ab/nsp3 | 226 | D226D | gaC | gaT | 4115 | 4115 | All | 0.000787 |
ORF1ab/nsp3 | 226 | D226D | gaC | gaT | 2240 | 2240 | B.1.1.7 | 0.002005 |
ORF1ab/nsp3 | 226 | D226D | gaC | gaT | 1111 | 1111 | B.1.221 | 0.078917 |
ORF1ab/nsp3 | 226 | D226D | gaC | gaT | 172 | 172 | B.1.582 | 0.084396 |
ORF1ab/nsp3 | 226 | D226D | gaC | gaT | 71 | 71 | B.1 | 0.00065 |
ORF1ab/nsp3 | 226 | D226D | gaC | gaT | 58 | 58 | B.1.571 | 0.563107 |
ORF1ab/nsp3 | 226 | D226D | gaC | gaT | 48 | 48 | AY.44 | 0.000292 |
ORF1ab/nsp3 | 226 | D226D | gaC | gaT | 41 | 41 | AY.4 | 0.000064 |
ORF1ab/nsp3 | 226 | D226D | gaC | gaT | 28 | 28 | AY.43 | 0.000124 |
ORF1ab/nsp3 | 226 | D226D | gaC | gaT | 22 | 22 | B.1.243 | 0.001531 |
ORF1ab/nsp3 | 226 | D226D | gaC | gaT | 21 | 21 | AY.5 | 0.000434 |
ORF1ab/nsp3 | 226 | D226D | gaC | gaT | 20 | 20 | AY.33 | 0.001336 |
ORF1ab/nsp3 | 226 | D226D | gaC | gaT | 19 | 19 | B.1.1.291 | 0.014105 |
ORF1ab/nsp3 | 226 | D226D | gaC | gaT | 17 | 17 | B.1.2 | 0.00015 |
ORF1ab/nsp3 | 226 | D226D | gaC | gaT | 17 | 17 | B.1.210 | 0.036247 |
ORF1ab/nsp3 | 226 | D226D | gaC | gaT | 17 | 17 | C.36.3 | 0.009643 |
ORF1ab/nsp3 | 226 | D226D | gaC | gaT | 15 | 15 | B.1.621 | 0.001328 |
ORF1ab/nsp3 | 226 | D226D | gaC | gaT | 12 | 12 | AY.3 | 0.000119 |
ORF1ab/nsp3 | 226 | D226D | gaC | gaT | 11 | 11 | B.1.617.2 | 0.000041 |
ORF1ab/nsp3 | 226 | D226D | gaC | gaT | 10 | 10 | B.1.427 | 0.000505 |
ORF1ab/nsp3 | 226 | D226D | gaC | gaT | 9 | 9 | AY.103 | 0.000056 |
ORF1ab/nsp3 | 226 | D226D | gaC | gaT | 9 | 9 | AY.26 | 0.000255 |
ORF1ab/nsp3 | 226 | D226D | gaC | gaT | 9 | 9 | AY.6 | 0.00037 |
ORF1ab/nsp3 | 226 | D226D | gaC | gaT | 9 | 9 | B.1.1 | 0.000163 |
ORF1ab/nsp3 | 226 | D226D | gaC | gaT | 6 | 6 | AY.42 | 0.000241 |
ORF1ab/nsp3 | 226 | D226D | gaC | gaT | 6 | 6 | B.1.409 | 0.004687 |
ORF1ab/nsp3 | 226 | D226D | gaC | gaT | 6 | 6 | B.1.596 | 0.000523 |
ORF1ab/nsp3 | 226 | D226D | gaC | gaT | 5 | 5 | B.1.177 | 0.000066 |
ORF1ab/nsp3 | 226 | D226D | gaC | gaT | 5 | 5 | B.1.429 | 0.000118 |
ORF1ab/nsp3 | 226 | D226D | gaC | gaT | 5 | 5 | B.1.466.2 | 0.001956 |
ORF1ab/nsp3 | 226 | D226D | gaC | gaT | 4 | 4 | AY.25 | 0.000024 |
ORF1ab/nsp3 | 226 | D226D | gaC | gaT | 4 | 4 | B.1.439 | 0.023669 |
ORF1ab/nsp3 | 226 | D226D | gaC | gaT | 3 | 3 | AY.20 | 0.000117 |
ORF1ab/nsp3 | 226 | D226D | gaC | gaT | 3 | 3 | AY.29 | 0.000047 |
ORF1ab/nsp3 | 226 | D226D | gaC | gaT | 3 | 3 | AY.39 | 0.000074 |
ORF1ab/nsp3 | 226 | D226D | gaC | gaT | 3 | 3 | AY.65 | 0.001599 |
ORF1ab/nsp3 | 226 | D226D | gaC | gaT | 3 | 3 | B.1.1.70 | 0.001023 |
ORF1ab/nsp3 | 226 | D226D | gaC | gaT | 3 | 3 | B.1.160 | 0.000094 |
ORF1ab/nsp3 | 226 | D226D | gaC | gaT | 3 | 3 | B.1.351 | 0.000089 |
ORF1ab/nsp3 | 226 | D226D | gaC | gaT | 2 | 2 | AY.102 | 0.000053 |
ORF1ab/nsp3 | 226 | D226D | gaC | gaT | 2 | 2 | AY.120 | 0.000074 |
ORF1ab/nsp3 | 226 | D226D | gaC | gaT | 2 | 2 | AY.14 | 0.000176 |
ORF1ab/nsp3 | 226 | D226D | gaC | gaT | 2 | 2 | AY.46.6 | 0.000144 |
ORF1ab/nsp3 | 226 | D226D | gaC | gaT | 2 | 2 | B.1.1.519 | 0.000079 |
ORF1ab/nsp3 | 226 | D226D | gaC | gaT | 2 | 2 | B.1.177.81 | 0.000379 |
ORF1ab/nsp3 | 226 | D226D | gaC | gaT | 2 | 2 | B.1.595 | 0.000522 |
ORF1ab/nsp3 | 226 | D226D | gaC | gaT | 2 | 2 | B.1.637 | 0.000146 |
ORF1ab/nsp3 | 226 | D226D | gaC | gaT | 2 | 2 | D.2 | 0.00015 |
ORF1ab/nsp3 | 226 | D226D | gaC | gaT | 2 | 2 | P.1 | 0.000032 |
ORF1ab/nsp3 | 226 | D226D | gaC | gaT | 2 | 2 | P.1.17 | 0.000324 |
ORF1ab/nsp3 | 226 | D226D | gaC | gaT | 1 | 1 | AY.100 | 0.000046 |
ORF1ab/nsp3 | 226 | D226D | gaC | gaT | 1 | 1 | AY.106 | 0.000335 |
ORF1ab/nsp3 | 226 | D226D | gaC | gaT | 1 | 1 | AY.111 | 0.000183 |
ORF1ab/nsp3 | 226 | D226D | gaC | gaT | 1 | 1 | AY.116 | 0.000287 |
ORF1ab/nsp3 | 226 | D226D | gaC | gaT | 1 | 1 | AY.121 | 0.000135 |
ORF1ab/nsp3 | 226 | D226D | gaC | gaT | 1 | 1 | AY.16 | 0.00038 |
ORF1ab/nsp3 | 226 | D226D | gaC | gaT | 1 | 1 | AY.16.1 | 0.00047 |
ORF1ab/nsp3 | 226 | D226D | gaC | gaT | 1 | 1 | AY.39.1 | 0.00004 |
ORF1ab/nsp3 | 226 | D226D | gaC | gaT | 1 | 1 | AY.45 | 0.000122 |
ORF1ab/nsp3 | 226 | D226D | gaC | gaT | 1 | 1 | AY.46.5 | 0.000198 |
ORF1ab/nsp3 | 226 | D226D | gaC | gaT | 1 | 1 | AY.7 | 0.000196 |
ORF1ab/nsp3 | 226 | D226D | gaC | gaT | 1 | 1 | AY.72 | 0.001361 |
ORF1ab/nsp3 | 226 | D226D | gaC | gaT | 1 | 1 | AY.75 | 0.000056 |
ORF1ab/nsp3 | 226 | D226D | gaC | gaT | 1 | 1 | AY.75.1 | 0.00018 |
ORF1ab/nsp3 | 226 | D226D | gaC | gaT | 1 | 1 | AY.9.1 | 0.000084 |
ORF1ab/nsp3 | 226 | D226D | gaC | gaT | 1 | 1 | AY.98 | 0.000079 |
ORF1ab/nsp3 | 226 | D226D | gaC | gaT | 1 | 1 | B.1.1.222 | 0.000204 |
ORF1ab/nsp3 | 226 | D226D | gaC | gaT | 1 | 1 | B.1.1.311 | 0.000358 |
ORF1ab/nsp3 | 226 | D226D | gaC | gaT | 1 | 1 | B.1.1.33 | 0.000421 |
ORF1ab/nsp3 | 226 | D226D | gaC | gaT | 1 | 1 | B.1.1.432 | 0.001266 |
ORF1ab/nsp3 | 226 | D226D | gaC | gaT | 1 | 1 | B.1.1.523 | 0.001563 |
ORF1ab/nsp3 | 226 | D226D | gaC | gaT | 1 | 1 | B.1.177.52 | 0.001757 |
ORF1ab/nsp3 | 226 | D226D | gaC | gaT | 1 | 1 | B.1.177.69 | 0.001484 |
ORF1ab/nsp3 | 226 | D226D | gaC | gaT | 1 | 1 | B.1.221.2 | 0.004016 |
ORF1ab/nsp3 | 226 | D226D | gaC | gaT | 1 | 1 | B.1.240 | 0.000216 |
ORF1ab/nsp3 | 226 | D226D | gaC | gaT | 1 | 1 | B.1.258 | 0.000067 |
ORF1ab/nsp3 | 226 | D226D | gaC | gaT | 1 | 1 | B.1.279 | 0.000514 |
ORF1ab/nsp3 | 226 | D226D | gaC | gaT | 1 | 1 | B.1.293 | 0.0125 |
ORF1ab/nsp3 | 226 | D226D | gaC | gaT | 1 | 1 | B.1.324 | 0.001605 |
ORF1ab/nsp3 | 226 | D226D | gaC | gaT | 1 | 1 | B.1.36.18 | 0.00042 |
ORF1ab/nsp3 | 226 | D226D | gaC | gaT | 1 | 1 | B.1.369 | 0.000285 |
ORF1ab/nsp3 | 226 | D226D | gaC | gaT | 1 | 1 | B.1.438.1 | 0.000107 |
ORF1ab/nsp3 | 226 | D226D | gaC | gaT | 1 | 1 | B.1.501 | 0.007353 |
ORF1ab/nsp3 | 226 | D226D | gaC | gaT | 1 | 1 | B.1.517 | 0.000427 |
ORF1ab/nsp3 | 226 | D226D | gaC | gaT | 1 | 1 | B.1.526 | 0.000024 |
ORF1ab/nsp3 | 226 | D226D | gaC | gaT | 1 | 1 | B.1.567 | 0.003333 |
ORF1ab/nsp3 | 226 | D226D | gaC | gaT | 1 | 1 | B.1.568 | 0.001111 |
ORF1ab/nsp3 | 226 | D226D | gaC | gaT | 1 | 1 | B.1.93 | 0.000934 |
ORF1ab/nsp3 | 226 | D226D | gaC | gaT | 1 | 1 | C.21 | 0.142857 |
ORF1ab/nsp3 | 226 | D226D | gaC | gaT | 1 | 1 | C.37 | 0.000116 |
ORF1ab/nsp3 | 226 | D226D | gaC | gaT | 1 | 1 | P.1.14 | 0.000048 |
ORF1ab/nsp3 | 226 | D226D | gaC | gaT | 1 | 1 | P.1.15 | 0.000232 |
ORF1ab/nsp3 | 226 | D226D | gaC | gaT | 1 | 1 | P.2 | 0.000187 |
ORF1ab/nsp3 | 226 | D226D | gaC | gaT | 1 | 1 | Q.1 | 0.000126 |
ORF1ab/nsp3 | 226 | D226D | gaC | gaT | 1 | 1 | Q.8 | 0.000165 |
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CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk
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